HHsearch alignment for GI: 254780229 and conserved domain: smart00382

>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

Probab=96.85  E-value=0.0015  Score=52.05  Aligned_cols=43  Identities=26%  Similarity=0.488  Sum_probs=31.7

Q ss_pred             CCCCEEEECCCCCCCHHHHHHHHHHHHHCCC-EEEEEECCHHHHH
Q ss_conf             4895599428787703899999999996798-2899601058999
Q gi|254780229|r  418 NGKNLIIEGPPGTGKSQTITNIIAAAMLHGK-KILFCAQKMAAIE  461 (1775)
Q Consensus       418 ~g~~~vi~GPPGTGKSQTIaNlIa~~la~Gk-~VLfVaeK~aALd  461 (1775)
T Consensus         1 ~~~~ill~G~~GsGKT-tl~~~la~~~~~~~~~v~~~~~~~~~~~   44 (148)
T smart00382        1 PGEVILIVGPPGSGKT-TLARALARELGPPGGGVIYIDGEDILEE   44 (148)
T ss_pred             CCCEEEEECCCCHHHH-HHHHHHHHHHCCCCCCEEEEEHHHHHHH
T ss_conf             9978999999970299-9999999872668996899875998988