HHsearch alignment for GI: 254780229 and conserved domain: smart00763

>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.09  E-value=0.0053  Score=46.28  Aligned_cols=25  Identities=28%  Similarity=0.511  Sum_probs=22.0

Q ss_pred             CCEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf             95599428787703899999999996
Q gi|254780229|r  420 KNLIIEGPPGTGKSQTITNIIAAAML  445 (1775)
Q Consensus       420 ~~~vi~GPPGTGKSQTIaNlIa~~la  445 (1775)
T Consensus        79 ~IllL~GPvGsGKS-tl~~~Lk~~lE  103 (361)
T smart00763       79 QILYLLGPVGGGKS-SLVECLKRGLE  103 (361)
T ss_pred             EEEEEECCCCCCHH-HHHHHHHHHHH
T ss_conf             69999889988779-99999999999