BLAST/PSIBLAST alignment of GI: 254780229 and GI: 297624445 at iteration 1
>gi|297624445|ref|YP_003705879.1| transcription elongation factor GreA/GreB domain-containing protein [Truepera radiovictrix DSM 17093] Length = 1819
>gi|297165625|gb|ADI15336.1| transcription elongation factor GreA/GreB domain protein [Truepera radiovictrix DSM 17093] Length = 1819
Score = 757 bits (1954), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 578/1802 (32%), Positives = 886/1802 (49%), Gaps = 187/1802 (10%)
Query: 13 LDDMRRKLLDCSVQNKLLNFRMDQQSV--LRIFNTSPNQLYQQIFREEVMQFMPLPM--- 67
++ +R +LLD N L+ F+ ++ +R+ + +P+ L+ Q+ + F+ LP
Sbjct: 15 IEQLRTRLLDLRSSNPLIAFKHSDRARTHVRVIDAAPDILFNQLIEGRSLTFVALPPLED 74
Query: 68 -PTKKQAQAYGFADTGNHHTIDES--TWIEKLGLSINYDLPIEYDSDDEKKNYQVLQKVR 124
P +++ A+ A DE+ +E LG D E K + + +R
Sbjct: 75 EPADERSDAFVTA-LREAKLSDEAYLAALEALG-----------DDPPEAKLAEAERALR 122
Query: 125 DLIVEDIKTSNDLVDIREIEKKIEISLQKLTSIIQNYGYADIEDLERAIKENKPLKPPHF 184
D + + + + E KK +L + + G DL + + + L P
Sbjct: 123 DRLRKTL-------GLPERPKKERPTL---SDWARENGIDPSYDL--SARHRQALVPTER 170
Query: 185 QNNLSDNQIQTAYFQDKLESILRLINEKSQISIKETGTSILYIVLGFLEWYEIDDYDNPR 244
N +IQT + E L + ++ S++E G + LY V GFLEWYE D D P
Sbjct: 171 LNA----EIQTLLLPEAFERKLGGLLTYARTSLQELGINTLYCVFGFLEWYESDASDRPI 226
Query: 245 LAPLFTIPVALEKRSSTSQPGLTQYHLRYTGEEIILNLSLKEKLQSDFGIILPAIAEGMW 304
L+PL V L++ T Q ++ + GEE ++N++L E+L DF ++LP +
Sbjct: 227 LSPLLLHSVELQR---TLQGSTYRFSISSMGEETVVNVTLNERLGRDFNLLLPPLEGDEG 283
Query: 305 PEDYFLQIQKIIEESKSHWAVRRYGVLGLLNFSKMLMYLDLDHLRWPEGEDNILNHDIIQ 364
PE YF + KII + K W VRR+ +G +F+++ MY DLD +WP + H ++
Sbjct: 284 PEAYFETVTKIIRD-KPRWRVRRFVTVGRFSFARLAMYHDLDPSKWP-SHRPLTAHPAVR 341
Query: 365 RLFIAQSCDHDKDNASSNQNIEYKIDEIEDIHQRCPLIDDSDSSQHSAVIDVINGKNLII 424
L D+D ++ Y D Q LI D+D+SQ SAV+DV+ G NL I
Sbjct: 342 ELLTGT----DRDAPFFSEV--YDTDAPAISRQVPLLITDADASQFSAVVDVMRGTNLAI 395
Query: 425 EGPPGTGKSQTITNIIAAAMLHGKKILFCAQKMAAIEVVRHRLEKAGLGEFCLELHSHKV 484
EGPPGTGKSQTITNIIAAA+ G+++LF A+K+AA+EVV+ RL+ AGLGEFCLELHS K
Sbjct: 396 EGPPGTGKSQTITNIIAAALAKGQRVLFVAEKIAALEVVKKRLDDAGLGEFCLELHSTKA 455
Query: 485 HKRAILDDLRKRIDNRNIKTVPQEIDVEITRYEELKGQLNQYAQEINQIWKNTELSIHQI 544
K +LD L KR+D ++ P E+D + +LK +L YA+ +N ++H +
Sbjct: 456 KKTEVLDALGKRLDLQHRIPPPAELDEALAELNDLKRRLTAYAEAMNAEVGALRKTVHDL 515
Query: 545 LMGAARYR--HNLPLDPVQLHVEGLSGENADRLLRSRL---EDQIKAFKDVIVEFHKQAG 599
L R++ N P + ++ ++A+ L +++L +D + + E + G
Sbjct: 516 LWFQQRFQAAQNAPSS-----LPDVALQDAEALTQAQLAEAKDTLTLLNRLHAELTQAYG 570
Query: 600 ESMELMNHPWYGVHSSDIHILNYNKALSSLENWQSALIKWQKDHEVFLNRYGVQNQRQ-- 657
+ HP+YGV+++D+ + L++L W S L Q H+ L G+++ +
Sbjct: 571 SAR---THPFYGVNNADLPPFAQAELLAALRQWSSTL---QALHQT-LQTLGLEDADEYT 623
Query: 658 --RLLYWQGQL--LAAVDQVPSLPRVICFKAFKKLEDSSIASIKQWIVDFSHLQDDFNDI 713
R+ + QL L A + +P P ++ A E+ + + +Q ++ F Q + ++
Sbjct: 624 LDRITHLTDQLAGLPAPESLPFEPSLMRVGASAAREEVA-RTFQQRLLSF---QKRYANL 679
Query: 714 NI-HLDPKKLEELKVGKDIPYFPDLSGEFGISAESSFKDIRNTISSLQKMMVSCEKYWES 772
+P L D P LS + AE + D R + L M+ ++
Sbjct: 680 ACASTNPDHL------LDHPAL--LSAAHTLCAELALDDER--VGELPHMVAQARADLDT 729
Query: 773 FS---GLMQ-------CFPPVFSQKILPNRQGFENAVLLMELAVELPVSLLRLRDDFFNN 822
GL+Q PP +L +G AV EL + + L+LR
Sbjct: 730 HGRIRGLVQDLAQTLGVAPPT----VLGELKGLVTAV---ELIGQTTDTTLKLRRPALLE 782
Query: 823 SGIDSVLEELFERLDSLKILQESLDDVFNMKK-LPDAQVLQDLNKVLHSAGLLSSWWGAS 881
G LE L RL +L+ L +F++ + A+ L+ + L AGL S +
Sbjct: 783 EGSSVALERLDARLAALRETHTELKPIFHIPADVGQAEALRQHAQALRGAGLFSCF-NQR 841
Query: 882 CKKAKASLLSLAKNPGISWKKLYAQLPNAYQFAVEKEKL-----EKRNFGNTLGEHY--- 933
++AK + L ++ +LP A E E L E + F N H+
Sbjct: 842 VREAKQAYRGL--------RREDVRLPT-RTMADELEALASHLHELQAFANDPALHHLAG 892
Query: 934 ---RGLSTDIVALKNIREWYRKVHQIWKDNSSLDDALINGFLMLDSQLFKRIQKLHCD-- 988
GL T L + + V + S L AL L S + + L
Sbjct: 893 PFAEGLDTPTADLLAVTRFAEAVRLHLQPTSPLLSALCTQLLKGPSTALEAARLLSASPD 952
Query: 989 --ELSKKITKVFGR-IQELEQFLPKQKELQNRSALFVGEGNVFDSLIQRLSHNFDPWQNW 1045
L + + GR Q L F + +QRL
Sbjct: 953 YAALKRVAQALSGRETQPLTDF-----------------AETLSTRVQRLEALAAELHAL 995
Query: 1046 FKEDEILLQEAQEFSAK---LHKIREKNIVLAEESLIKKFFGEEIKLSVFDSNTKESNKS 1102
+ ++ L + + LH +R + LA ++ + F G D K +
Sbjct: 996 ALDPQLALSSLEPLARDALDLHALRAE---LAAQAASRSFLG------ALDRGVKTDPEM 1046
Query: 1103 LAVINSTLEFAHSIRERVLFDELIQGINHIDDHTIYNSFIKDLKNLRMIWQQQVKTQEDF 1162
LA + +T+E RV EL + Y + L+ LR + Q+ +
Sbjct: 1047 LASLLTTVE-------RVRALELPAALKTRLFTDAYRAEATRLRELRAVLVAQLHDEARA 1099
Query: 1163 IEDT----QLDMAQWAARCNDEL--VKLISRNSEAIKKPRWLNGWVNLMHMVQDMQDKGL 1216
E QL+ + R EL I R A L+GWV ++ + + L
Sbjct: 1100 AERANDLAQLEETTFFGRALPELPLAAAIRRLEAAGAASEALDGWVQ--YLRAHRRARAL 1157
Query: 1217 KEIQAAIFNNSLDVKYLESSLLAAIYHQLSQEILTEKPHLMHYSAVQFTAKQERFREYDK 1276
+QA + ++ D+ ++ A+ L++ P L S + +ERF E D+
Sbjct: 1158 -HLQAFLPSSQRDLADPAAAFEYAVARALTKIAYDRFPVLSDVSGERHMQLRERFAELDR 1216
Query: 1277 RLQFLQRQRIASVIGNQKIAQGISGGLKSDYTELSLIRSELGKKNRNIPIRQLISRAKNS 1336
R LQR+++A+ + ++ + G+ G K YTE +LI E KK R+I +R L+SRA +
Sbjct: 1217 RTLELQRRKLAAELAHKPVTWGVGAGPKKSYTERALIEHERSKKKRHIALRNLLSRAGTA 1276
Query: 1337 LLQLKPCFMMSPMSVANYLEPKDVKFDLVIMDESSQIKPEDALGVIARGKQIVVVGDPKQ 1396
+ +LKPCFMMSP+S+ +YL P ++FDL+I+DE+SQ+KPEDA+G +AR +Q+VVVGD KQ
Sbjct: 1277 IQELKPCFMMSPLSIGHYLPPGSLEFDLIIIDEASQMKPEDAIGAVARAEQLVVVGDTKQ 1336
Query: 1397 LPPTRFFDHDNDQEDYDEEVAAVSQTESILDALLPLF-SMRRLQWHYRSLNENLIACSNY 1455
LPPT FF+ + DEE + ESILD L ++ RRL WHYRS +E+LIA SN
Sbjct: 1337 LPPTTFFERSDTP---DEEDEETVEAESILDLALAVYRPARRLLWHYRSRHEDLIAFSNR 1393
Query: 1456 YFYDNSLIVFPSPYTSVDRYGVGFTHVKNGVVVDQGNPEEARVIALAVKDHALRY----P 1511
+FYDNSLIVFPSP YGV T V Q R AV + ALR+ P
Sbjct: 1394 HFYDNSLIVFPSPVRDARTYGVTSTFVGGTY---QAQVRVNRKEITAVTEAALRFMQEHP 1450
Query: 1512 EESLGVIAMNAKQRDLIESTINKLCRKDSEVEKAISKLRMHADPFFIKNLENVQGDERDR 1571
+ SLG++A+N QRD +E +++ KD ++ + + +PFF+KNLENVQGDERD
Sbjct: 1451 QRSLGIVALNQAQRDALEEELDRAIAKDRAAQRYLERWEGSLEPFFVKNLENVQGDERDV 1510
Query: 1572 IFISFTYGPHEPGGRVFQRFGPINSDIGWRRLNVLFTRSRRRIEVFSTMRYLDVVVDIDS 1631
IFIS YGP + G V QRFGPINS G RRLNVLFTR++ ++ VF++++ D+ V +S
Sbjct: 1511 IFISTVYGP-DARGTVAQRFGPINSAGGHRRLNVLFTRAKCQVRVFTSLKPGDIRVTPES 1569
Query: 1632 KLGIRVMRDFLHFAETGYMEHSLKTKTNKQDSDFAVSVVNELEKTGFACDSQLGDMGFSI 1691
+ G+R +RD+L +A TG +E T + DSDF V V+ L + G+ Q+G G+ +
Sbjct: 1570 RQGVRALRDYLEYAATGRLETGTPTG-REPDSDFEVMVMACLRRAGYEATPQVGVAGYFV 1628
Query: 1692 DVVVRDPNNPGHYLMGIECDGAMYNSAKSARDRDRLRQEVLERMGWRIRRIWSVDWFSNP 1751
D+ V P+ G YL IECDGA Y+S+K+ARDRDRLRQEVLER+GW + RIWS DWFSNP
Sbjct: 1629 DLAVHHPHAAGSYLAAIECDGATYHSSKAARDRDRLRQEVLERLGWHVYRIWSTDWFSNP 1688
Query: 1752 DE 1753
D+
Sbjct: 1689 DK 1690