BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780229|ref|YP_003064642.1| hypothetical protein
CLIBASIA_00570 [Candidatus Liberibacter asiaticus str. psy62]
         (1775 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780229|ref|YP_003064642.1| hypothetical protein CLIBASIA_00570 [Candidatus Liberibacter
            asiaticus str. psy62]
          Length = 1775

 Score = 3662 bits (9496), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1775/1775 (100%), Positives = 1775/1775 (100%)

Query: 1    MNNYNIKHVRQCLDDMRRKLLDCSVQNKLLNFRMDQQSVLRIFNTSPNQLYQQIFREEVM 60
            MNNYNIKHVRQCLDDMRRKLLDCSVQNKLLNFRMDQQSVLRIFNTSPNQLYQQIFREEVM
Sbjct: 1    MNNYNIKHVRQCLDDMRRKLLDCSVQNKLLNFRMDQQSVLRIFNTSPNQLYQQIFREEVM 60

Query: 61   QFMPLPMPTKKQAQAYGFADTGNHHTIDESTWIEKLGLSINYDLPIEYDSDDEKKNYQVL 120
            QFMPLPMPTKKQAQAYGFADTGNHHTIDESTWIEKLGLSINYDLPIEYDSDDEKKNYQVL
Sbjct: 61   QFMPLPMPTKKQAQAYGFADTGNHHTIDESTWIEKLGLSINYDLPIEYDSDDEKKNYQVL 120

Query: 121  QKVRDLIVEDIKTSNDLVDIREIEKKIEISLQKLTSIIQNYGYADIEDLERAIKENKPLK 180
            QKVRDLIVEDIKTSNDLVDIREIEKKIEISLQKLTSIIQNYGYADIEDLERAIKENKPLK
Sbjct: 121  QKVRDLIVEDIKTSNDLVDIREIEKKIEISLQKLTSIIQNYGYADIEDLERAIKENKPLK 180

Query: 181  PPHFQNNLSDNQIQTAYFQDKLESILRLINEKSQISIKETGTSILYIVLGFLEWYEIDDY 240
            PPHFQNNLSDNQIQTAYFQDKLESILRLINEKSQISIKETGTSILYIVLGFLEWYEIDDY
Sbjct: 181  PPHFQNNLSDNQIQTAYFQDKLESILRLINEKSQISIKETGTSILYIVLGFLEWYEIDDY 240

Query: 241  DNPRLAPLFTIPVALEKRSSTSQPGLTQYHLRYTGEEIILNLSLKEKLQSDFGIILPAIA 300
            DNPRLAPLFTIPVALEKRSSTSQPGLTQYHLRYTGEEIILNLSLKEKLQSDFGIILPAIA
Sbjct: 241  DNPRLAPLFTIPVALEKRSSTSQPGLTQYHLRYTGEEIILNLSLKEKLQSDFGIILPAIA 300

Query: 301  EGMWPEDYFLQIQKIIEESKSHWAVRRYGVLGLLNFSKMLMYLDLDHLRWPEGEDNILNH 360
            EGMWPEDYFLQIQKIIEESKSHWAVRRYGVLGLLNFSKMLMYLDLDHLRWPEGEDNILNH
Sbjct: 301  EGMWPEDYFLQIQKIIEESKSHWAVRRYGVLGLLNFSKMLMYLDLDHLRWPEGEDNILNH 360

Query: 361  DIIQRLFIAQSCDHDKDNASSNQNIEYKIDEIEDIHQRCPLIDDSDSSQHSAVIDVINGK 420
            DIIQRLFIAQSCDHDKDNASSNQNIEYKIDEIEDIHQRCPLIDDSDSSQHSAVIDVINGK
Sbjct: 361  DIIQRLFIAQSCDHDKDNASSNQNIEYKIDEIEDIHQRCPLIDDSDSSQHSAVIDVINGK 420

Query: 421  NLIIEGPPGTGKSQTITNIIAAAMLHGKKILFCAQKMAAIEVVRHRLEKAGLGEFCLELH 480
            NLIIEGPPGTGKSQTITNIIAAAMLHGKKILFCAQKMAAIEVVRHRLEKAGLGEFCLELH
Sbjct: 421  NLIIEGPPGTGKSQTITNIIAAAMLHGKKILFCAQKMAAIEVVRHRLEKAGLGEFCLELH 480

Query: 481  SHKVHKRAILDDLRKRIDNRNIKTVPQEIDVEITRYEELKGQLNQYAQEINQIWKNTELS 540
            SHKVHKRAILDDLRKRIDNRNIKTVPQEIDVEITRYEELKGQLNQYAQEINQIWKNTELS
Sbjct: 481  SHKVHKRAILDDLRKRIDNRNIKTVPQEIDVEITRYEELKGQLNQYAQEINQIWKNTELS 540

Query: 541  IHQILMGAARYRHNLPLDPVQLHVEGLSGENADRLLRSRLEDQIKAFKDVIVEFHKQAGE 600
            IHQILMGAARYRHNLPLDPVQLHVEGLSGENADRLLRSRLEDQIKAFKDVIVEFHKQAGE
Sbjct: 541  IHQILMGAARYRHNLPLDPVQLHVEGLSGENADRLLRSRLEDQIKAFKDVIVEFHKQAGE 600

Query: 601  SMELMNHPWYGVHSSDIHILNYNKALSSLENWQSALIKWQKDHEVFLNRYGVQNQRQRLL 660
            SMELMNHPWYGVHSSDIHILNYNKALSSLENWQSALIKWQKDHEVFLNRYGVQNQRQRLL
Sbjct: 601  SMELMNHPWYGVHSSDIHILNYNKALSSLENWQSALIKWQKDHEVFLNRYGVQNQRQRLL 660

Query: 661  YWQGQLLAAVDQVPSLPRVICFKAFKKLEDSSIASIKQWIVDFSHLQDDFNDINIHLDPK 720
            YWQGQLLAAVDQVPSLPRVICFKAFKKLEDSSIASIKQWIVDFSHLQDDFNDINIHLDPK
Sbjct: 661  YWQGQLLAAVDQVPSLPRVICFKAFKKLEDSSIASIKQWIVDFSHLQDDFNDINIHLDPK 720

Query: 721  KLEELKVGKDIPYFPDLSGEFGISAESSFKDIRNTISSLQKMMVSCEKYWESFSGLMQCF 780
            KLEELKVGKDIPYFPDLSGEFGISAESSFKDIRNTISSLQKMMVSCEKYWESFSGLMQCF
Sbjct: 721  KLEELKVGKDIPYFPDLSGEFGISAESSFKDIRNTISSLQKMMVSCEKYWESFSGLMQCF 780

Query: 781  PPVFSQKILPNRQGFENAVLLMELAVELPVSLLRLRDDFFNNSGIDSVLEELFERLDSLK 840
            PPVFSQKILPNRQGFENAVLLMELAVELPVSLLRLRDDFFNNSGIDSVLEELFERLDSLK
Sbjct: 781  PPVFSQKILPNRQGFENAVLLMELAVELPVSLLRLRDDFFNNSGIDSVLEELFERLDSLK 840

Query: 841  ILQESLDDVFNMKKLPDAQVLQDLNKVLHSAGLLSSWWGASCKKAKASLLSLAKNPGISW 900
            ILQESLDDVFNMKKLPDAQVLQDLNKVLHSAGLLSSWWGASCKKAKASLLSLAKNPGISW
Sbjct: 841  ILQESLDDVFNMKKLPDAQVLQDLNKVLHSAGLLSSWWGASCKKAKASLLSLAKNPGISW 900

Query: 901  KKLYAQLPNAYQFAVEKEKLEKRNFGNTLGEHYRGLSTDIVALKNIREWYRKVHQIWKDN 960
            KKLYAQLPNAYQFAVEKEKLEKRNFGNTLGEHYRGLSTDIVALKNIREWYRKVHQIWKDN
Sbjct: 901  KKLYAQLPNAYQFAVEKEKLEKRNFGNTLGEHYRGLSTDIVALKNIREWYRKVHQIWKDN 960

Query: 961  SSLDDALINGFLMLDSQLFKRIQKLHCDELSKKITKVFGRIQELEQFLPKQKELQNRSAL 1020
            SSLDDALINGFLMLDSQLFKRIQKLHCDELSKKITKVFGRIQELEQFLPKQKELQNRSAL
Sbjct: 961  SSLDDALINGFLMLDSQLFKRIQKLHCDELSKKITKVFGRIQELEQFLPKQKELQNRSAL 1020

Query: 1021 FVGEGNVFDSLIQRLSHNFDPWQNWFKEDEILLQEAQEFSAKLHKIREKNIVLAEESLIK 1080
            FVGEGNVFDSLIQRLSHNFDPWQNWFKEDEILLQEAQEFSAKLHKIREKNIVLAEESLIK
Sbjct: 1021 FVGEGNVFDSLIQRLSHNFDPWQNWFKEDEILLQEAQEFSAKLHKIREKNIVLAEESLIK 1080

Query: 1081 KFFGEEIKLSVFDSNTKESNKSLAVINSTLEFAHSIRERVLFDELIQGINHIDDHTIYNS 1140
            KFFGEEIKLSVFDSNTKESNKSLAVINSTLEFAHSIRERVLFDELIQGINHIDDHTIYNS
Sbjct: 1081 KFFGEEIKLSVFDSNTKESNKSLAVINSTLEFAHSIRERVLFDELIQGINHIDDHTIYNS 1140

Query: 1141 FIKDLKNLRMIWQQQVKTQEDFIEDTQLDMAQWAARCNDELVKLISRNSEAIKKPRWLNG 1200
            FIKDLKNLRMIWQQQVKTQEDFIEDTQLDMAQWAARCNDELVKLISRNSEAIKKPRWLNG
Sbjct: 1141 FIKDLKNLRMIWQQQVKTQEDFIEDTQLDMAQWAARCNDELVKLISRNSEAIKKPRWLNG 1200

Query: 1201 WVNLMHMVQDMQDKGLKEIQAAIFNNSLDVKYLESSLLAAIYHQLSQEILTEKPHLMHYS 1260
            WVNLMHMVQDMQDKGLKEIQAAIFNNSLDVKYLESSLLAAIYHQLSQEILTEKPHLMHYS
Sbjct: 1201 WVNLMHMVQDMQDKGLKEIQAAIFNNSLDVKYLESSLLAAIYHQLSQEILTEKPHLMHYS 1260

Query: 1261 AVQFTAKQERFREYDKRLQFLQRQRIASVIGNQKIAQGISGGLKSDYTELSLIRSELGKK 1320
            AVQFTAKQERFREYDKRLQFLQRQRIASVIGNQKIAQGISGGLKSDYTELSLIRSELGKK
Sbjct: 1261 AVQFTAKQERFREYDKRLQFLQRQRIASVIGNQKIAQGISGGLKSDYTELSLIRSELGKK 1320

Query: 1321 NRNIPIRQLISRAKNSLLQLKPCFMMSPMSVANYLEPKDVKFDLVIMDESSQIKPEDALG 1380
            NRNIPIRQLISRAKNSLLQLKPCFMMSPMSVANYLEPKDVKFDLVIMDESSQIKPEDALG
Sbjct: 1321 NRNIPIRQLISRAKNSLLQLKPCFMMSPMSVANYLEPKDVKFDLVIMDESSQIKPEDALG 1380

Query: 1381 VIARGKQIVVVGDPKQLPPTRFFDHDNDQEDYDEEVAAVSQTESILDALLPLFSMRRLQW 1440
            VIARGKQIVVVGDPKQLPPTRFFDHDNDQEDYDEEVAAVSQTESILDALLPLFSMRRLQW
Sbjct: 1381 VIARGKQIVVVGDPKQLPPTRFFDHDNDQEDYDEEVAAVSQTESILDALLPLFSMRRLQW 1440

Query: 1441 HYRSLNENLIACSNYYFYDNSLIVFPSPYTSVDRYGVGFTHVKNGVVVDQGNPEEARVIA 1500
            HYRSLNENLIACSNYYFYDNSLIVFPSPYTSVDRYGVGFTHVKNGVVVDQGNPEEARVIA
Sbjct: 1441 HYRSLNENLIACSNYYFYDNSLIVFPSPYTSVDRYGVGFTHVKNGVVVDQGNPEEARVIA 1500

Query: 1501 LAVKDHALRYPEESLGVIAMNAKQRDLIESTINKLCRKDSEVEKAISKLRMHADPFFIKN 1560
            LAVKDHALRYPEESLGVIAMNAKQRDLIESTINKLCRKDSEVEKAISKLRMHADPFFIKN
Sbjct: 1501 LAVKDHALRYPEESLGVIAMNAKQRDLIESTINKLCRKDSEVEKAISKLRMHADPFFIKN 1560

Query: 1561 LENVQGDERDRIFISFTYGPHEPGGRVFQRFGPINSDIGWRRLNVLFTRSRRRIEVFSTM 1620
            LENVQGDERDRIFISFTYGPHEPGGRVFQRFGPINSDIGWRRLNVLFTRSRRRIEVFSTM
Sbjct: 1561 LENVQGDERDRIFISFTYGPHEPGGRVFQRFGPINSDIGWRRLNVLFTRSRRRIEVFSTM 1620

Query: 1621 RYLDVVVDIDSKLGIRVMRDFLHFAETGYMEHSLKTKTNKQDSDFAVSVVNELEKTGFAC 1680
            RYLDVVVDIDSKLGIRVMRDFLHFAETGYMEHSLKTKTNKQDSDFAVSVVNELEKTGFAC
Sbjct: 1621 RYLDVVVDIDSKLGIRVMRDFLHFAETGYMEHSLKTKTNKQDSDFAVSVVNELEKTGFAC 1680

Query: 1681 DSQLGDMGFSIDVVVRDPNNPGHYLMGIECDGAMYNSAKSARDRDRLRQEVLERMGWRIR 1740
            DSQLGDMGFSIDVVVRDPNNPGHYLMGIECDGAMYNSAKSARDRDRLRQEVLERMGWRIR
Sbjct: 1681 DSQLGDMGFSIDVVVRDPNNPGHYLMGIECDGAMYNSAKSARDRDRLRQEVLERMGWRIR 1740

Query: 1741 RIWSVDWFSNPDEVIEPIIRELRELISQKSSSTRE 1775
            RIWSVDWFSNPDEVIEPIIRELRELISQKSSSTRE
Sbjct: 1741 RIWSVDWFSNPDEVIEPIIRELRELISQKSSSTRE 1775


>gi|254780619|ref|YP_003065032.1| primosome assembly protein PriA [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 731

 Score = 30.0 bits (66), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 13/47 (27%), Positives = 26/47 (55%)

Query: 423 IIEGPPGTGKSQTITNIIAAAMLHGKKILFCAQKMAAIEVVRHRLEK 469
           +I G  G+GK++    I+AA +  GK++L    +++    +  R +K
Sbjct: 222 LISGVTGSGKTEVYLEIVAAVLHLGKQVLILLPEISLTSAILERFQK 268


>gi|254780173|ref|YP_003064586.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 257

 Score = 28.9 bits (63), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 18/26 (69%)

Query: 414 IDVINGKNLIIEGPPGTGKSQTITNI 439
           ++V+ G+ +II GP G+GKS  I  I
Sbjct: 38  LNVLRGERVIIAGPSGSGKSTLIRCI 63


>gi|254781220|ref|YP_003065633.1| hypothetical protein CLIBASIA_05635 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 130

 Score = 28.5 bits (62), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 6/50 (12%)

Query: 160 NYGYADIEDLERAIKENKPLKPPHFQNNLSDNQIQTAYFQDKLESILRLI 209
           NY    IE LERA+K +K L   HF+    D  I+T   +D +E + R+I
Sbjct: 33  NYEVEVIEKLERALKTSKKL--IHFR----DRTIRTHILEDLIEEVNRII 76


>gi|254780684|ref|YP_003065097.1| flagellum-specific ATP synthase [Candidatus Liberibacter asiaticus
            str. psy62]
          Length = 438

 Score = 25.8 bits (55), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 12/48 (25%), Positives = 26/48 (54%)

Query: 1071 IVLAEESLIKKFFGEEIKLSVFDSNTKESNKSLAVINSTLEFAHSIRE 1118
            +  ++ES I +       +++ +  + + +  L +++S   FAHSIRE
Sbjct: 221  VATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIRE 268


>gi|254780945|ref|YP_003065358.1| ATP-dependent DNA helicase RecG [Candidatus Liberibacter asiaticus
            str. psy62]
          Length = 700

 Score = 25.0 bits (53), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 14/75 (18%)

Query: 1110 LEFAHSIRERVLFDELIQGINHIDDHTIYNSFIKDL------------KNLRMIWQQQVK 1157
             E+    RER+ +DEL+ G   I    +   F K++            K LR I     K
Sbjct: 218  FEWTSPARERLAYDELLAG--QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTK 275

Query: 1158 TQEDFIEDTQLDMAQ 1172
            +QE  I+D   DM+Q
Sbjct: 276  SQESAIKDILQDMSQ 290


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.319    0.136    0.397 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,158,645
Number of Sequences: 1233
Number of extensions: 50942
Number of successful extensions: 169
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 161
Number of HSP's gapped (non-prelim): 16
length of query: 1775
length of database: 328,796
effective HSP length: 87
effective length of query: 1688
effective length of database: 221,525
effective search space: 373934200
effective search space used: 373934200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)