BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780229|ref|YP_003064642.1| hypothetical protein CLIBASIA_00570 [Candidatus Liberibacter asiaticus str. psy62] (1775 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780229|ref|YP_003064642.1| hypothetical protein CLIBASIA_00570 [Candidatus Liberibacter asiaticus str. psy62] Length = 1775 Score = 3662 bits (9496), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1775/1775 (100%), Positives = 1775/1775 (100%) Query: 1 MNNYNIKHVRQCLDDMRRKLLDCSVQNKLLNFRMDQQSVLRIFNTSPNQLYQQIFREEVM 60 MNNYNIKHVRQCLDDMRRKLLDCSVQNKLLNFRMDQQSVLRIFNTSPNQLYQQIFREEVM Sbjct: 1 MNNYNIKHVRQCLDDMRRKLLDCSVQNKLLNFRMDQQSVLRIFNTSPNQLYQQIFREEVM 60 Query: 61 QFMPLPMPTKKQAQAYGFADTGNHHTIDESTWIEKLGLSINYDLPIEYDSDDEKKNYQVL 120 QFMPLPMPTKKQAQAYGFADTGNHHTIDESTWIEKLGLSINYDLPIEYDSDDEKKNYQVL Sbjct: 61 QFMPLPMPTKKQAQAYGFADTGNHHTIDESTWIEKLGLSINYDLPIEYDSDDEKKNYQVL 120 Query: 121 QKVRDLIVEDIKTSNDLVDIREIEKKIEISLQKLTSIIQNYGYADIEDLERAIKENKPLK 180 QKVRDLIVEDIKTSNDLVDIREIEKKIEISLQKLTSIIQNYGYADIEDLERAIKENKPLK Sbjct: 121 QKVRDLIVEDIKTSNDLVDIREIEKKIEISLQKLTSIIQNYGYADIEDLERAIKENKPLK 180 Query: 181 PPHFQNNLSDNQIQTAYFQDKLESILRLINEKSQISIKETGTSILYIVLGFLEWYEIDDY 240 PPHFQNNLSDNQIQTAYFQDKLESILRLINEKSQISIKETGTSILYIVLGFLEWYEIDDY Sbjct: 181 PPHFQNNLSDNQIQTAYFQDKLESILRLINEKSQISIKETGTSILYIVLGFLEWYEIDDY 240 Query: 241 DNPRLAPLFTIPVALEKRSSTSQPGLTQYHLRYTGEEIILNLSLKEKLQSDFGIILPAIA 300 DNPRLAPLFTIPVALEKRSSTSQPGLTQYHLRYTGEEIILNLSLKEKLQSDFGIILPAIA Sbjct: 241 DNPRLAPLFTIPVALEKRSSTSQPGLTQYHLRYTGEEIILNLSLKEKLQSDFGIILPAIA 300 Query: 301 EGMWPEDYFLQIQKIIEESKSHWAVRRYGVLGLLNFSKMLMYLDLDHLRWPEGEDNILNH 360 EGMWPEDYFLQIQKIIEESKSHWAVRRYGVLGLLNFSKMLMYLDLDHLRWPEGEDNILNH Sbjct: 301 EGMWPEDYFLQIQKIIEESKSHWAVRRYGVLGLLNFSKMLMYLDLDHLRWPEGEDNILNH 360 Query: 361 DIIQRLFIAQSCDHDKDNASSNQNIEYKIDEIEDIHQRCPLIDDSDSSQHSAVIDVINGK 420 DIIQRLFIAQSCDHDKDNASSNQNIEYKIDEIEDIHQRCPLIDDSDSSQHSAVIDVINGK Sbjct: 361 DIIQRLFIAQSCDHDKDNASSNQNIEYKIDEIEDIHQRCPLIDDSDSSQHSAVIDVINGK 420 Query: 421 NLIIEGPPGTGKSQTITNIIAAAMLHGKKILFCAQKMAAIEVVRHRLEKAGLGEFCLELH 480 NLIIEGPPGTGKSQTITNIIAAAMLHGKKILFCAQKMAAIEVVRHRLEKAGLGEFCLELH Sbjct: 421 NLIIEGPPGTGKSQTITNIIAAAMLHGKKILFCAQKMAAIEVVRHRLEKAGLGEFCLELH 480 Query: 481 SHKVHKRAILDDLRKRIDNRNIKTVPQEIDVEITRYEELKGQLNQYAQEINQIWKNTELS 540 SHKVHKRAILDDLRKRIDNRNIKTVPQEIDVEITRYEELKGQLNQYAQEINQIWKNTELS Sbjct: 481 SHKVHKRAILDDLRKRIDNRNIKTVPQEIDVEITRYEELKGQLNQYAQEINQIWKNTELS 540 Query: 541 IHQILMGAARYRHNLPLDPVQLHVEGLSGENADRLLRSRLEDQIKAFKDVIVEFHKQAGE 600 IHQILMGAARYRHNLPLDPVQLHVEGLSGENADRLLRSRLEDQIKAFKDVIVEFHKQAGE Sbjct: 541 IHQILMGAARYRHNLPLDPVQLHVEGLSGENADRLLRSRLEDQIKAFKDVIVEFHKQAGE 600 Query: 601 SMELMNHPWYGVHSSDIHILNYNKALSSLENWQSALIKWQKDHEVFLNRYGVQNQRQRLL 660 SMELMNHPWYGVHSSDIHILNYNKALSSLENWQSALIKWQKDHEVFLNRYGVQNQRQRLL Sbjct: 601 SMELMNHPWYGVHSSDIHILNYNKALSSLENWQSALIKWQKDHEVFLNRYGVQNQRQRLL 660 Query: 661 YWQGQLLAAVDQVPSLPRVICFKAFKKLEDSSIASIKQWIVDFSHLQDDFNDINIHLDPK 720 YWQGQLLAAVDQVPSLPRVICFKAFKKLEDSSIASIKQWIVDFSHLQDDFNDINIHLDPK Sbjct: 661 YWQGQLLAAVDQVPSLPRVICFKAFKKLEDSSIASIKQWIVDFSHLQDDFNDINIHLDPK 720 Query: 721 KLEELKVGKDIPYFPDLSGEFGISAESSFKDIRNTISSLQKMMVSCEKYWESFSGLMQCF 780 KLEELKVGKDIPYFPDLSGEFGISAESSFKDIRNTISSLQKMMVSCEKYWESFSGLMQCF Sbjct: 721 KLEELKVGKDIPYFPDLSGEFGISAESSFKDIRNTISSLQKMMVSCEKYWESFSGLMQCF 780 Query: 781 PPVFSQKILPNRQGFENAVLLMELAVELPVSLLRLRDDFFNNSGIDSVLEELFERLDSLK 840 PPVFSQKILPNRQGFENAVLLMELAVELPVSLLRLRDDFFNNSGIDSVLEELFERLDSLK Sbjct: 781 PPVFSQKILPNRQGFENAVLLMELAVELPVSLLRLRDDFFNNSGIDSVLEELFERLDSLK 840 Query: 841 ILQESLDDVFNMKKLPDAQVLQDLNKVLHSAGLLSSWWGASCKKAKASLLSLAKNPGISW 900 ILQESLDDVFNMKKLPDAQVLQDLNKVLHSAGLLSSWWGASCKKAKASLLSLAKNPGISW Sbjct: 841 ILQESLDDVFNMKKLPDAQVLQDLNKVLHSAGLLSSWWGASCKKAKASLLSLAKNPGISW 900 Query: 901 KKLYAQLPNAYQFAVEKEKLEKRNFGNTLGEHYRGLSTDIVALKNIREWYRKVHQIWKDN 960 KKLYAQLPNAYQFAVEKEKLEKRNFGNTLGEHYRGLSTDIVALKNIREWYRKVHQIWKDN Sbjct: 901 KKLYAQLPNAYQFAVEKEKLEKRNFGNTLGEHYRGLSTDIVALKNIREWYRKVHQIWKDN 960 Query: 961 SSLDDALINGFLMLDSQLFKRIQKLHCDELSKKITKVFGRIQELEQFLPKQKELQNRSAL 1020 SSLDDALINGFLMLDSQLFKRIQKLHCDELSKKITKVFGRIQELEQFLPKQKELQNRSAL Sbjct: 961 SSLDDALINGFLMLDSQLFKRIQKLHCDELSKKITKVFGRIQELEQFLPKQKELQNRSAL 1020 Query: 1021 FVGEGNVFDSLIQRLSHNFDPWQNWFKEDEILLQEAQEFSAKLHKIREKNIVLAEESLIK 1080 FVGEGNVFDSLIQRLSHNFDPWQNWFKEDEILLQEAQEFSAKLHKIREKNIVLAEESLIK Sbjct: 1021 FVGEGNVFDSLIQRLSHNFDPWQNWFKEDEILLQEAQEFSAKLHKIREKNIVLAEESLIK 1080 Query: 1081 KFFGEEIKLSVFDSNTKESNKSLAVINSTLEFAHSIRERVLFDELIQGINHIDDHTIYNS 1140 KFFGEEIKLSVFDSNTKESNKSLAVINSTLEFAHSIRERVLFDELIQGINHIDDHTIYNS Sbjct: 1081 KFFGEEIKLSVFDSNTKESNKSLAVINSTLEFAHSIRERVLFDELIQGINHIDDHTIYNS 1140 Query: 1141 FIKDLKNLRMIWQQQVKTQEDFIEDTQLDMAQWAARCNDELVKLISRNSEAIKKPRWLNG 1200 FIKDLKNLRMIWQQQVKTQEDFIEDTQLDMAQWAARCNDELVKLISRNSEAIKKPRWLNG Sbjct: 1141 FIKDLKNLRMIWQQQVKTQEDFIEDTQLDMAQWAARCNDELVKLISRNSEAIKKPRWLNG 1200 Query: 1201 WVNLMHMVQDMQDKGLKEIQAAIFNNSLDVKYLESSLLAAIYHQLSQEILTEKPHLMHYS 1260 WVNLMHMVQDMQDKGLKEIQAAIFNNSLDVKYLESSLLAAIYHQLSQEILTEKPHLMHYS Sbjct: 1201 WVNLMHMVQDMQDKGLKEIQAAIFNNSLDVKYLESSLLAAIYHQLSQEILTEKPHLMHYS 1260 Query: 1261 AVQFTAKQERFREYDKRLQFLQRQRIASVIGNQKIAQGISGGLKSDYTELSLIRSELGKK 1320 AVQFTAKQERFREYDKRLQFLQRQRIASVIGNQKIAQGISGGLKSDYTELSLIRSELGKK Sbjct: 1261 AVQFTAKQERFREYDKRLQFLQRQRIASVIGNQKIAQGISGGLKSDYTELSLIRSELGKK 1320 Query: 1321 NRNIPIRQLISRAKNSLLQLKPCFMMSPMSVANYLEPKDVKFDLVIMDESSQIKPEDALG 1380 NRNIPIRQLISRAKNSLLQLKPCFMMSPMSVANYLEPKDVKFDLVIMDESSQIKPEDALG Sbjct: 1321 NRNIPIRQLISRAKNSLLQLKPCFMMSPMSVANYLEPKDVKFDLVIMDESSQIKPEDALG 1380 Query: 1381 VIARGKQIVVVGDPKQLPPTRFFDHDNDQEDYDEEVAAVSQTESILDALLPLFSMRRLQW 1440 VIARGKQIVVVGDPKQLPPTRFFDHDNDQEDYDEEVAAVSQTESILDALLPLFSMRRLQW Sbjct: 1381 VIARGKQIVVVGDPKQLPPTRFFDHDNDQEDYDEEVAAVSQTESILDALLPLFSMRRLQW 1440 Query: 1441 HYRSLNENLIACSNYYFYDNSLIVFPSPYTSVDRYGVGFTHVKNGVVVDQGNPEEARVIA 1500 HYRSLNENLIACSNYYFYDNSLIVFPSPYTSVDRYGVGFTHVKNGVVVDQGNPEEARVIA Sbjct: 1441 HYRSLNENLIACSNYYFYDNSLIVFPSPYTSVDRYGVGFTHVKNGVVVDQGNPEEARVIA 1500 Query: 1501 LAVKDHALRYPEESLGVIAMNAKQRDLIESTINKLCRKDSEVEKAISKLRMHADPFFIKN 1560 LAVKDHALRYPEESLGVIAMNAKQRDLIESTINKLCRKDSEVEKAISKLRMHADPFFIKN Sbjct: 1501 LAVKDHALRYPEESLGVIAMNAKQRDLIESTINKLCRKDSEVEKAISKLRMHADPFFIKN 1560 Query: 1561 LENVQGDERDRIFISFTYGPHEPGGRVFQRFGPINSDIGWRRLNVLFTRSRRRIEVFSTM 1620 LENVQGDERDRIFISFTYGPHEPGGRVFQRFGPINSDIGWRRLNVLFTRSRRRIEVFSTM Sbjct: 1561 LENVQGDERDRIFISFTYGPHEPGGRVFQRFGPINSDIGWRRLNVLFTRSRRRIEVFSTM 1620 Query: 1621 RYLDVVVDIDSKLGIRVMRDFLHFAETGYMEHSLKTKTNKQDSDFAVSVVNELEKTGFAC 1680 RYLDVVVDIDSKLGIRVMRDFLHFAETGYMEHSLKTKTNKQDSDFAVSVVNELEKTGFAC Sbjct: 1621 RYLDVVVDIDSKLGIRVMRDFLHFAETGYMEHSLKTKTNKQDSDFAVSVVNELEKTGFAC 1680 Query: 1681 DSQLGDMGFSIDVVVRDPNNPGHYLMGIECDGAMYNSAKSARDRDRLRQEVLERMGWRIR 1740 DSQLGDMGFSIDVVVRDPNNPGHYLMGIECDGAMYNSAKSARDRDRLRQEVLERMGWRIR Sbjct: 1681 DSQLGDMGFSIDVVVRDPNNPGHYLMGIECDGAMYNSAKSARDRDRLRQEVLERMGWRIR 1740 Query: 1741 RIWSVDWFSNPDEVIEPIIRELRELISQKSSSTRE 1775 RIWSVDWFSNPDEVIEPIIRELRELISQKSSSTRE Sbjct: 1741 RIWSVDWFSNPDEVIEPIIRELRELISQKSSSTRE 1775 >gi|254780619|ref|YP_003065032.1| primosome assembly protein PriA [Candidatus Liberibacter asiaticus str. psy62] Length = 731 Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust. Identities = 13/47 (27%), Positives = 26/47 (55%) Query: 423 IIEGPPGTGKSQTITNIIAAAMLHGKKILFCAQKMAAIEVVRHRLEK 469 +I G G+GK++ I+AA + GK++L +++ + R +K Sbjct: 222 LISGVTGSGKTEVYLEIVAAVLHLGKQVLILLPEISLTSAILERFQK 268 >gi|254780173|ref|YP_003064586.1| ABC transporter related protein [Candidatus Liberibacter asiaticus str. psy62] Length = 257 Score = 28.9 bits (63), Expect = 0.80, Method: Compositional matrix adjust. Identities = 12/26 (46%), Positives = 18/26 (69%) Query: 414 IDVINGKNLIIEGPPGTGKSQTITNI 439 ++V+ G+ +II GP G+GKS I I Sbjct: 38 LNVLRGERVIIAGPSGSGKSTLIRCI 63 >gi|254781220|ref|YP_003065633.1| hypothetical protein CLIBASIA_05635 [Candidatus Liberibacter asiaticus str. psy62] Length = 130 Score = 28.5 bits (62), Expect = 0.90, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 6/50 (12%) Query: 160 NYGYADIEDLERAIKENKPLKPPHFQNNLSDNQIQTAYFQDKLESILRLI 209 NY IE LERA+K +K L HF+ D I+T +D +E + R+I Sbjct: 33 NYEVEVIEKLERALKTSKKL--IHFR----DRTIRTHILEDLIEEVNRII 76 >gi|254780684|ref|YP_003065097.1| flagellum-specific ATP synthase [Candidatus Liberibacter asiaticus str. psy62] Length = 438 Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust. Identities = 12/48 (25%), Positives = 26/48 (54%) Query: 1071 IVLAEESLIKKFFGEEIKLSVFDSNTKESNKSLAVINSTLEFAHSIRE 1118 + ++ES I + +++ + + + + L +++S FAHSIRE Sbjct: 221 VATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIRE 268 >gi|254780945|ref|YP_003065358.1| ATP-dependent DNA helicase RecG [Candidatus Liberibacter asiaticus str. psy62] Length = 700 Score = 25.0 bits (53), Expect = 9.7, Method: Compositional matrix adjust. Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 14/75 (18%) Query: 1110 LEFAHSIRERVLFDELIQGINHIDDHTIYNSFIKDL------------KNLRMIWQQQVK 1157 E+ RER+ +DEL+ G I + F K++ K LR I K Sbjct: 218 FEWTSPARERLAYDELLAG--QIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTK 275 Query: 1158 TQEDFIEDTQLDMAQ 1172 +QE I+D DM+Q Sbjct: 276 SQESAIKDILQDMSQ 290 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.319 0.136 0.397 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,158,645 Number of Sequences: 1233 Number of extensions: 50942 Number of successful extensions: 169 Number of sequences better than 100.0: 16 Number of HSP's better than 100.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 9 Number of HSP's that attempted gapping in prelim test: 161 Number of HSP's gapped (non-prelim): 16 length of query: 1775 length of database: 328,796 effective HSP length: 87 effective length of query: 1688 effective length of database: 221,525 effective search space: 373934200 effective search space used: 373934200 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 45 (21.9 bits)