Query gi|254780230|ref|YP_003064643.1| hypothetical protein CLIBASIA_00575 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 96
No_of_seqs 103 out of 553
Neff 5.6
Searched_HMMs 23785
Date Tue May 24 01:21:16 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780230.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1taf_A TFIID TBP associated fa 18.0 46 0.0019 13.4 5.2 44 21-64 4-47 (68)
2 1c8m_4 HRV16, human rhinovirus 10.6 46 0.0019 13.4 0.0 19 49-67 50-68 (77)
3 1aym_4 HRV16, human rhinovirus 9.3 55 0.0023 13.0 0.0 18 49-66 50-67 (68)
4 2gdl_A Myeloid antimicrobial p 4.2 36 0.0015 14.0 -3.2 12 55-66 10-21 (31)
5 2fyz_B Fusion protein, fusion 3.7 1.8E+02 0.0077 10.2 0.3 11 69-79 6-16 (48)
6 3aa0_A F-actin-capping protein 3.7 1.8E+02 0.0077 10.2 2.0 35 38-75 237-271 (286)
7 1yue_A Head vertex protein GP2 3.6 1.9E+02 0.0079 10.2 0.2 15 53-67 21-35 (427)
8 1ncq_D Coat protein VP4; HRV, 3.4 42 0.0018 13.6 -3.5 17 50-66 51-67 (68)
9 1d4m_4 Protein (coxsackievirus 2.8 46 0.0019 13.4 -3.8 17 50-66 51-67 (68)
10 3ejf_A Non-structural protein 2.8 2.5E+02 0.011 9.5 0.5 12 63-74 128-139 (176)
No 1
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcription factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=18.04 E-value=46 Score=13.42 Aligned_cols=44 Identities=9% Similarity=0.213 Sum_probs=36.1
Q ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999986358878765489999999999997789999998627
Q gi|254780230|r 21 TRIVFSFLYTYDIINPLNFFVQTARQLLYSFTEPFLIPIRRFTP 64 (96)
Q Consensus 21 ~rvIlsW~~~f~~~n~~n~~v~~i~~~l~~lTeP~L~piRr~iP 64 (96)
++++.+-+-..++..-..+.+++..|+.|+.|--+|.--+-+--
T Consensus 4 a~~i~~iL~smGV~~yeprV~~qlLef~yRYtt~VL~DA~~ys~ 47 (68)
T 1taf_A 4 AQVIMSILKELNVQEYEPRVVNQLLEFTFRYVTSILDDAKVYAN 47 (68)
T ss_dssp HHHHHHHHHHTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999986986036899999999999999999999999986
No 2
>1c8m_4 HRV16, human rhinovirus 16 coat protein; antiviral compound, drug, WIN compound, icosahedral virus; HET: W11; 2.80A {Human rhinovirus 16} SCOP: b.121.4.1
Probab=10.57 E-value=46 Score=13.41 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHCCCCC
Q ss_conf 9997789999998627657
Q gi|254780230|r 49 YSFTEPFLIPIRRFTPSLG 67 (96)
Q Consensus 49 ~~lTeP~L~piRr~iPplg 67 (96)
.+.|||+...+.+-+|++-
T Consensus 50 sKFT~Pv~D~~~~~~P~L~ 68 (77)
T 1c8m_4 50 SKFTDPVKDVLEKGIPTLQ 68 (77)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHCCCCCCC
T ss_conf 5541458999970576657
No 3
>1aym_4 HRV16, human rhinovirus 16 coat protein; RNA, site-directed mutagenesis, icosahedral virus; HET: MYR DAO; 2.15A {Human rhinovirus SP} SCOP: b.121.4.1 PDB: 1ayn_4* 1d3e_4 1ncr_D* 1nd2_D* 1qju_4* 1qjx_4* 1qjy_4* 1nd3_D* 1fpn_4* 1v9u_4* 3dpr_D* 1r1a_4* 2hwd_4* 2hwe_4* 2hwf_4*
Probab=9.27 E-value=55 Score=13.00 Aligned_cols=18 Identities=28% Similarity=0.438 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHCCCC
Q ss_conf 999778999999862765
Q gi|254780230|r 49 YSFTEPFLIPIRRFTPSL 66 (96)
Q Consensus 49 ~~lTeP~L~piRr~iPpl 66 (96)
.+.|||+..-+.+-+|++
T Consensus 50 sKFT~Pv~Dv~~k~~P~L 67 (68)
T 1aym_4 50 SKFTDPVKDVLEKGIPTL 67 (68)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHCCCCCC
T ss_conf 554145899997027677
No 4
>2gdl_A Myeloid antimicrobial peptide 27; cathelicidin, alpha helix, antimicrobial protein; NMR {Synthetic}
Probab=4.21 E-value=36 Score=13.99 Aligned_cols=12 Identities=58% Similarity=1.046 Sum_probs=7.9
Q ss_pred HHHHHHHHCCCC
Q ss_conf 999999862765
Q gi|254780230|r 55 FLIPIRRFTPSL 66 (96)
Q Consensus 55 ~L~piRr~iPpl 66 (96)
.|+.+||++|-.
T Consensus 10 fl~kirrf~pkv 21 (31)
T 2gdl_A 10 FLRKIRRFRPKV 21 (31)
T ss_dssp SSSSCCCCTTCC
T ss_pred HHHHHHHCCCCE
T ss_conf 999998507746
No 5
>2fyz_B Fusion protein, fusion glycoprotein F0; mumps virus fusion protein core, protein binding; 2.20A {Mumps virus} SCOP: h.3.2.1
Probab=3.74 E-value=1.8e+02 Score=10.22 Aligned_cols=11 Identities=27% Similarity=0.287 Sum_probs=6.5
Q ss_pred CCCCCHHHHHH
Q ss_conf 55320179999
Q gi|254780230|r 69 EWKRIDLSPII 79 (96)
Q Consensus 69 g~~giDlSpiv 79 (96)
|..|+|+|--.
T Consensus 6 grggidistel 16 (48)
T 2fyz_B 6 GRGGIDISTEL 16 (48)
T ss_dssp -----CHHHHH
T ss_pred CCCCEEEHHHH
T ss_conf 87751320268
No 6
>3aa0_A F-actin-capping protein subunit alpha-1; actin capping protein, barbed END regulation, carmil family conformational change; 1.70A {Gallus gallus} PDB: 2kz7_A 1izn_A 3aa1_A* 3aa6_A 3aa7_A* 3aaa_A 3lk2_A 3lk3_A 3lk4_A 2kxp_A
Probab=3.72 E-value=1.8e+02 Score=10.21 Aligned_cols=35 Identities=17% Similarity=0.276 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH
Q ss_conf 48999999999999778999999862765775532017
Q gi|254780230|r 38 NFFVQTARQLLYSFTEPFLIPIRRFTPSLGVEWKRIDL 75 (96)
Q Consensus 38 n~~v~~i~~~l~~lTeP~L~piRr~iPplg~g~~giDl 75 (96)
|.+-..+-+...++-|--+|-.||.+|=.|. -+|-
T Consensus 237 ~~~q~~L~e~f~~lse~tFK~LRR~LPVTR~---Ki~W 271 (286)
T 3aa0_A 237 NEYQTAISENYQTMSDTTFKALRRQLPVTRT---KIDW 271 (286)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHCCSSCTTSS---CCCH
T ss_pred HHHHHHHHHHHHHHCHHHHHHHHCCCCCCCC---CCCC
T ss_conf 9999999999987298789987601886777---3160
No 7
>1yue_A Head vertex protein GP24; bacteriophage T4, capsid protein, bacteriophage, virus, HK97, MAD, viral protein; 2.90A {Enterobacteria phage T4}
Probab=3.62 E-value=1.9e+02 Score=10.16 Aligned_cols=15 Identities=33% Similarity=0.434 Sum_probs=10.4
Q ss_pred HHHHHHHHHHCCCCC
Q ss_conf 789999998627657
Q gi|254780230|r 53 EPFLIPIRRFTPSLG 67 (96)
Q Consensus 53 eP~L~piRr~iPplg 67 (96)
+|+|-++||-+|++=
T Consensus 21 ~pVLisLvRampnLI 35 (427)
T 1yue_A 21 RPNLVALTRATTKLI 35 (427)
T ss_dssp CHHHHHHHHHHHHHS
T ss_pred CCEEEEEEHHCCHHH
T ss_conf 533887511120377
No 8
>1ncq_D Coat protein VP4; HRV, pleconaril, icosahedral virus; HET: W11; 2.50A {Human rhinovirus 14} SCOP: b.121.4.1 PDB: 1d3i_4* 1hrv_4* 1hri_4* 1na1_D* 1k5m_D* 1r08_4* 1r09_4* 1rmu_4 1ruc_4* 1rud_4* 1rue_4* 1ruf_4 1rug_4* 1ruh_4* 1rui_4* 1ruj_4 1rvf_4 1vrh_4* 2hwb_4* 2hwc_4* ...
Probab=3.36 E-value=42 Score=13.63 Aligned_cols=17 Identities=35% Similarity=0.468 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHCCCC
Q ss_conf 99778999999862765
Q gi|254780230|r 50 SFTEPFLIPIRRFTPSL 66 (96)
Q Consensus 50 ~lTeP~L~piRr~iPpl 66 (96)
+.|||+..-+.+-+|++
T Consensus 51 KFT~Pv~dv~~~~~p~L 67 (68)
T 1ncq_D 51 KFTEPVKDLMLKGAPAL 67 (68)
T ss_dssp HHHCCBSSCCCTTSCSC
T ss_pred HHHHHHHHHHHCCCCCC
T ss_conf 54144899986237778
No 9
>1d4m_4 Protein (coxsackievirus A9); picornavirus structure, RGD, uncoating, virus-receptor interaction, WIN compound, virus/viral protein; HET: MYR W71; 2.90A {Human coxsackievirus A9} SCOP: b.121.4.1 PDB: 1oop_D* 1cov_4* 1jew_4 1mqt_D* 1ev1_4* 1h8t_D* 1upn_D 2c8i_D
Probab=2.78 E-value=46 Score=13.40 Aligned_cols=17 Identities=35% Similarity=0.483 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCC
Q ss_conf 99778999999862765
Q gi|254780230|r 50 SFTEPFLIPIRRFTPSL 66 (96)
Q Consensus 50 ~lTeP~L~piRr~iPpl 66 (96)
+.|||+...+.+-+|++
T Consensus 51 KFT~Pv~Dv~~~~~PaL 67 (68)
T 1d4m_4 51 KFTEPVKDVMIKSLPAL 67 (68)
T ss_dssp HHHCCBSSCCCSSSCSC
T ss_pred HHHHHHHHHHHCCCCCC
T ss_conf 64145899986247778
No 10
>3ejf_A Non-structural protein 3; IBV, coronavirus, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting; 1.60A {Avian infectious bronchitis virus} PDB: 3eke_A* 3ewo_A 3ewp_A*
Probab=2.77 E-value=2.5e+02 Score=9.49 Aligned_cols=12 Identities=25% Similarity=0.382 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCH
Q ss_conf 276577553201
Q gi|254780230|r 63 TPSLGVEWKRID 74 (96)
Q Consensus 63 iPplg~g~~giD 74 (96)
+|.+|.|..|+|
T Consensus 128 ~PalgtG~~G~p 139 (176)
T 3ejf_A 128 VPVLSLGIFGVD 139 (176)
T ss_dssp EECCCTTSTTCC
T ss_pred ECCCCCCCCCCC
T ss_conf 635257766889
Done!