RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780230|ref|YP_003064643.1| hypothetical protein
CLIBASIA_00575 [Candidatus Liberibacter asiaticus str. psy62]
         (96 letters)



>1oih_A Putative alkylsulfatase ATSK; non-heme Fe(II) alphaketoglutarate
          dependent dioxygenase, jelly roll, oxidoreductase;
          1.89A {Pseudomonas putida} SCOP: b.82.2.5 PDB: 1oii_A*
          1oij_B* 1vz4_A 1vz5_A 1oik_A* 1oij_A* 1oij_C*
          Length = 301

 Score = 25.2 bits (54), Expect = 3.5
 Identities = 7/41 (17%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 57 IPIRRFTPSLGVEWKRIDLS-PIILLTVIYILQCFLKFLIL 96
          + +      +G E + + LS  +   TV  I    ++  ++
Sbjct: 15 LDVHPVAGRIGAEIRGVKLSPDLDAATVEAIQAALVRHKVI 55


>1otj_A Alpha-ketoglutarate-dependent taurine dioxygenase; jelly roll
          motif, alpha ketoglutarate-dependent dioxygenase,
          oxidoreductase; 1.90A {Escherichia coli} SCOP: b.82.2.5
          PDB: 1gqw_A* 1os7_A* 1gy9_A
          Length = 283

 Score = 24.8 bits (53), Expect = 5.1
 Identities = 7/41 (17%), Positives = 16/41 (39%), Gaps = 1/41 (2%)

Query: 57 IPIRRFTPSLGVEWKRIDLS-PIILLTVIYILQCFLKFLIL 96
          + I    P +G +    DL+ P+       +    L+  ++
Sbjct: 5  LSITPLGPYIGAQISGADLTRPLSDNQFEQLYHAVLRHQVV 45


>3cxn_A Urease accessory protein UREF; helical, nickel, chaperone; HET:
          MSE; 1.55A {Helicobacter pylori} PDB: 2wgl_A*
          Length = 274

 Score = 24.2 bits (52), Expect = 6.5
 Identities = 7/28 (25%), Positives = 11/28 (39%), Gaps = 1/28 (3%)

Query: 43 TARQLLYSFTEPFLIPIRRFTPSLGVEW 70
              L+    +    PI  +T S G+E 
Sbjct: 50 DNEFLILQVNDAVF-PIGSYTHSFGLET 76


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.340    0.155    0.469 

Gapped
Lambda     K      H
   0.267   0.0518    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 853,353
Number of extensions: 35333
Number of successful extensions: 113
Number of sequences better than 10.0: 1
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 6
Length of query: 96
Length of database: 5,693,230
Length adjustment: 62
Effective length of query: 34
Effective length of database: 4,190,102
Effective search space: 142463468
Effective search space used: 142463468
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 50 (23.5 bits)