RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780230|ref|YP_003064643.1| hypothetical protein CLIBASIA_00575 [Candidatus Liberibacter asiaticus str. psy62] (96 letters) >d1oiha_ b.82.2.5 (A:) Putative alkylsulfatase AtsK {Pseudomonas putida [TaxId: 303]} Length = 288 Score = 25.0 bits (53), Expect = 1.9 Identities = 7/41 (17%), Positives = 17/41 (41%), Gaps = 1/41 (2%) Query: 57 IPIRRFTPSLGVEWKRIDLS-PIILLTVIYILQCFLKFLIL 96 + + +G E + + LS + TV I ++ ++ Sbjct: 3 LDVHPVAGRIGAEIRGVKLSPDLDAATVEAIQAALVRHKVI 43 >d1otja_ b.82.2.5 (A:) Taurine/alpha-ketoglutarate dioxygenase TauD {Escherichia coli [TaxId: 562]} Length = 281 Score = 24.5 bits (52), Expect = 2.1 Identities = 7/39 (17%), Positives = 15/39 (38%), Gaps = 1/39 (2%) Query: 59 IRRFTPSLGVEWKRIDLS-PIILLTVIYILQCFLKFLIL 96 I P +G + DL+ P+ + L+ ++ Sbjct: 6 ITPLGPYIGAQISGADLTRPLSDNQFEQLYHAVLRHQVV 44 >d1d8wa_ c.1.15.2 (A:) L-rhamnose isomerase {Escherichia coli [TaxId: 562]} Length = 416 Score = 23.2 bits (50), Expect = 5.9 Identities = 8/55 (14%), Positives = 18/55 (32%) Query: 7 ILLLLLELYANIVITRIVFSFLYTYDIINPLNFFVQTARQLLYSFTEPFLIPIRR 61 + E+ + + R+ + IN + +V R + + L P Sbjct: 303 TQAIASEIVRHDLFDRVHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTAE 357 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.340 0.155 0.469 Gapped Lambda K H 0.267 0.0436 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 374,264 Number of extensions: 15921 Number of successful extensions: 36 Number of sequences better than 10.0: 1 Number of HSP's gapped: 36 Number of HSP's successfully gapped: 3 Length of query: 96 Length of database: 2,407,596 Length adjustment: 59 Effective length of query: 37 Effective length of database: 1,597,526 Effective search space: 59108462 Effective search space used: 59108462 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.8 bits) S2: 47 (22.6 bits)