RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780230|ref|YP_003064643.1| hypothetical protein
CLIBASIA_00575 [Candidatus Liberibacter asiaticus str. psy62]
         (96 letters)



>d1oiha_ b.82.2.5 (A:) Putative alkylsulfatase AtsK {Pseudomonas
          putida [TaxId: 303]}
          Length = 288

 Score = 25.0 bits (53), Expect = 1.9
 Identities = 7/41 (17%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 57 IPIRRFTPSLGVEWKRIDLS-PIILLTVIYILQCFLKFLIL 96
          + +      +G E + + LS  +   TV  I    ++  ++
Sbjct: 3  LDVHPVAGRIGAEIRGVKLSPDLDAATVEAIQAALVRHKVI 43


>d1otja_ b.82.2.5 (A:) Taurine/alpha-ketoglutarate dioxygenase
          TauD {Escherichia coli [TaxId: 562]}
          Length = 281

 Score = 24.5 bits (52), Expect = 2.1
 Identities = 7/39 (17%), Positives = 15/39 (38%), Gaps = 1/39 (2%)

Query: 59 IRRFTPSLGVEWKRIDLS-PIILLTVIYILQCFLKFLIL 96
          I    P +G +    DL+ P+       +    L+  ++
Sbjct: 6  ITPLGPYIGAQISGADLTRPLSDNQFEQLYHAVLRHQVV 44


>d1d8wa_ c.1.15.2 (A:) L-rhamnose isomerase {Escherichia coli
           [TaxId: 562]}
          Length = 416

 Score = 23.2 bits (50), Expect = 5.9
 Identities = 8/55 (14%), Positives = 18/55 (32%)

Query: 7   ILLLLLELYANIVITRIVFSFLYTYDIINPLNFFVQTARQLLYSFTEPFLIPIRR 61
              +  E+  + +  R+     +    IN +  +V   R +  +     L P   
Sbjct: 303 TQAIASEIVRHDLFDRVHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTAE 357


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.340    0.155    0.469 

Gapped
Lambda     K      H
   0.267   0.0436    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 374,264
Number of extensions: 15921
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 3
Length of query: 96
Length of database: 2,407,596
Length adjustment: 59
Effective length of query: 37
Effective length of database: 1,597,526
Effective search space: 59108462
Effective search space used: 59108462
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 47 (22.6 bits)