Query gi|254780231|ref|YP_003064644.1| hypothetical protein CLIBASIA_00580 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 98
No_of_seqs 104 out of 559
Neff 5.4
Searched_HMMs 33803
Date Mon May 23 22:15:54 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780231.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1n91_A ORF, hypothetical prot 99.9 1E-23 3.1E-28 162.0 6.3 85 2-93 15-102 (108)
2 >1jrm_A MTH0637, conserved hyp 99.9 1.3E-22 3.8E-27 155.5 5.9 84 2-93 14-98 (104)
3 >1t6a_A Rbstp2229 gene product 75.7 6.5 0.00019 20.3 5.4 38 28-69 29-71 (79)
4 >1t3q_B Quinoline 2-oxidoreduc 74.1 7.2 0.00021 20.0 5.8 46 29-74 13-58 (152)
5 >3hrd_B Nicotinate dehydrogena 71.4 8.3 0.00024 19.6 6.2 47 29-75 14-60 (153)
6 >1v97_A XD, xanthine dehydroge 71.1 7.1 0.00021 20.0 4.4 47 29-75 15-61 (126)
7 >1mow_A Chimera of homing endo 67.4 8.9 0.00026 19.5 4.3 45 28-73 32-78 (116)
8 >2w3s_B Xanthine dehydrogenase 65.5 11 0.00033 18.9 5.0 47 29-75 15-61 (145)
9 >1dpt_A D-dopachrome tautomera 65.2 9.6 0.00028 19.3 4.1 57 4-68 37-99 (104)
10 >1uiz_A MIF, macrophage migrat 62.0 12 0.00036 18.7 4.1 57 4-68 38-99 (104)
11 >3fwt_A Macrophage migration i 60.4 13 0.00038 18.5 4.0 59 4-70 59-122 (125)
12 >1rm6_A 4-hydroxybenzoyl-COA r 59.4 14 0.00042 18.2 6.2 48 29-76 225-272 (365)
13 >1n62_B Carbon monoxide dehydr 58.8 15 0.00043 18.2 5.9 48 29-76 51-98 (188)
14 >3djh_A Macrophage migration i 58.2 15 0.00044 18.1 4.1 57 4-68 37-98 (103)
15 >3fwu_A Macrophage migration i 56.5 14 0.00041 18.3 3.7 57 4-68 59-120 (124)
16 >1ffv_B CUTL, molybdoprotein o 55.3 17 0.0005 17.8 5.9 49 29-77 48-96 (185)
17 >3b64_A Macrophage migration i 52.7 18 0.00055 17.6 6.0 57 4-68 38-99 (103)
18 >2wkb_A Macrophage migration i 49.2 20 0.00059 17.4 3.5 46 28-73 54-104 (125)
19 >2vs7_A I-DMOI, homing endonuc 48.4 22 0.00064 17.2 4.3 45 28-73 32-78 (120)
20 >1szw_A TRNA pseudouridine syn 47.6 20 0.0006 17.3 3.4 43 28-74 62-104 (237)
21 >1dgj_A Aldehyde oxidoreductas 46.7 23 0.00068 17.0 6.2 48 29-76 14-64 (121)
22 >1mww_A Hypothetical protein H 44.0 25 0.00075 16.7 3.5 44 28-71 56-104 (128)
23 >3dhx_A Methionine import ATP- 43.4 25 0.00073 16.8 3.2 59 29-94 21-86 (106)
24 >1hfo_A Migration inhibitory f 39.5 30 0.00088 16.3 6.5 57 4-68 37-98 (103)
25 >2qsw_A Methionine import ATP- 32.4 39 0.0011 15.6 3.1 61 28-95 22-89 (100)
26 >1otf_A 4-oxalocrotonate tauto 30.4 42 0.0012 15.4 3.1 23 47-69 21-43 (62)
27 >2os5_A Acemif; macrophage mig 29.7 43 0.0013 15.4 6.5 57 4-68 38-99 (104)
28 >1fg7_A Histidinol phosphate a 29.0 36 0.0011 15.9 2.2 26 46-71 12-37 (214)
29 >1u2c_A Dystroglycan; IG-like 27.9 46 0.0014 15.2 3.9 44 31-74 18-63 (133)
30 >1z2z_A Probable tRNA pseudour 24.6 54 0.0016 14.8 3.5 55 28-86 46-105 (227)
31 >3i9v_2 NADH-quinone oxidoredu 24.3 43 0.0013 15.4 1.9 19 47-65 22-40 (50)
32 >1xdp_A Polyphosphate kinase; 20.6 65 0.0019 14.3 2.2 30 41-70 159-188 (206)
33 >2wvr_C DNA replication factor 20.0 26 0.00076 16.7 0.0 44 45-93 494-539 (546)
No 1
>>1n91_A ORF, hypothetical protein; alpha+beta, northeast structural genomics consortium, PSI, protein structure initiative, NESG; NMR {Escherichia coli O157} (A:)
Probab=99.89 E-value=1e-23 Score=161.97 Aligned_cols=85 Identities=24% Similarity=0.332 Sum_probs=76.6
Q ss_pred EEEEEEEECCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHEEEEECCCCCEEEEEECC
Q ss_conf 05999994186653023101456667776799999638767978899999999982998444799835577806999829
Q gi|254780231|r 2 CNVIVRLIPNAKKSGIASLEIPKDTSDTIHMKIKVTATPQKGKANKAMLAMLAKKLALSKSSLRMLSKQSSPLKIIYIDK 81 (98)
Q Consensus 2 ~~i~v~V~P~a~~~~I~g~~~~~d~~~~~~lkv~v~ApPv~GkAN~ali~~Lak~l~v~ks~I~I~~G~~sr~K~i~I~~ 81 (98)
+.|.|+|+|||++++|.|++ ++.|+|+|+|||+||+||++|++|||++|+||+|+|+|++|++||.|+++|+|
T Consensus 15 ~~i~i~v~P~a~~~~i~~~~-------~~~l~v~v~app~~GkAN~~li~~Lak~l~v~ks~I~i~~G~tsr~K~i~i~g 87 (108)
T 1n91_A 15 LVLRLYIQPKASRDSIVGLH-------GDEVKVAITAPPVDGQANSHLVKFLGKQFRVAKSQVVIEKGELGRHKQIKIIN 87 (108)
T ss_dssp EEEEEEEECSSSSCEEEEEC-------SSCEEEECCCCSSHHHHHHHHHHHHHHHTCCCTTTEEESSCTTSSEEEEEEES
T ss_pred EEEEEEEEECCCCCCCCCEE-------CCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHEEEEEECCCCCCCEEEEEC
T ss_conf 99999998598635104450-------88799999669978707899999999995997000899863777852899957
Q ss_pred C---HHHHHHHHHHH
Q ss_conf 9---89999999752
Q gi|254780231|r 82 D---CKEITELLQNN 93 (98)
Q Consensus 82 ~---~~~i~~~L~~~ 93 (98)
. .+++.+.|+..
T Consensus 88 ~~~~~~~l~~~L~~~ 102 (108)
T 1n91_A 88 PQQIPPEVAALINLE 102 (108)
T ss_dssp CCCCCHHHHCCCCCC
T ss_pred CCCCHHHHHHHHHHH
T ss_conf 553879999998644
No 2
>>1jrm_A MTH0637, conserved hypothetical protein MTH637; alpha-beta protein, structural genomics, OCSP, NESG; NMR {Methanothermobacterthermautotrophicus} (A:)
Probab=99.87 E-value=1.3e-22 Score=155.48 Aligned_cols=84 Identities=25% Similarity=0.374 Sum_probs=77.2
Q ss_pred EEEEEEEECCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHEEEEECCCCCEEEEEECC
Q ss_conf 05999994186653023101456667776799999638767978899999999982998444799835577806999829
Q gi|254780231|r 2 CNVIVRLIPNAKKSGIASLEIPKDTSDTIHMKIKVTATPQKGKANKAMLAMLAKKLALSKSSLRMLSKQSSPLKIIYIDK 81 (98)
Q Consensus 2 ~~i~v~V~P~a~~~~I~g~~~~~d~~~~~~lkv~v~ApPv~GkAN~ali~~Lak~l~v~ks~I~I~~G~~sr~K~i~I~~ 81 (98)
+.|.|+|+|||++++|.|++ .|++.|+|+|+|||+|||||++|++|||++|+ |+|+|++|++||+|+++|++
T Consensus 14 ~~i~i~V~P~a~~~~i~g~~-----~~~~~l~v~v~app~~GkAN~ali~~La~~lk---s~i~iv~G~tsr~K~i~I~~ 85 (104)
T 1jrm_A 14 LLVNIEVSPASGKFGIPSYN-----EWRKRIEVKIHSPPQKGKANREIIKEFSETFG---RDVEIVSGQKSRQKTIRIQG 85 (104)
T ss_dssp EEEEEESCCCSSSCCCCCCC-----TTTTCCCCCCCTTCCCCCHHHHHHHHHHHHHS---SEEEECSCGGGSEEEEEEES
T ss_pred EEEEEEEEECCCCCEEEEEC-----CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHC---CCEEEEECCCCCCCEEEEEC
T ss_conf 99999997489754363051-----77988999995699887689999999999858---99899846877860899907
Q ss_pred -CHHHHHHHHHHH
Q ss_conf -989999999752
Q gi|254780231|r 82 -DCKEITELLQNN 93 (98)
Q Consensus 82 -~~~~i~~~L~~~ 93 (98)
+.+++.++|...
T Consensus 86 ~~~~~l~~~l~~~ 98 (104)
T 1jrm_A 86 MGRDLFLKLVSEK 98 (104)
T ss_dssp CCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHH
T ss_conf 9999999999998
No 3
>>1t6a_A Rbstp2229 gene product; structural genomics, hypothetical protein, PSI, protein structure initiative; HET: MSE; 2.05A {Geobacillus stearothermophilus} (A:48-126)
Probab=75.74 E-value=6.5 Score=20.27 Aligned_cols=38 Identities=34% Similarity=0.428 Sum_probs=25.7
Q ss_pred CCCEEEEEEECCCC-----CCHHHHHHHHHHHHHHCCCHHHEEEEEC
Q ss_conf 77679999963876-----7978899999999982998444799835
Q gi|254780231|r 28 DTIHMKIKVTATPQ-----KGKANKAMLAMLAKKLALSKSSLRMLSK 69 (98)
Q Consensus 28 ~~~~lkv~v~ApPv-----~GkAN~ali~~Lak~l~v~ks~I~I~~G 69 (98)
.++.--|.+.-||. +|||| |.|+||||.|. ....+-.|
T Consensus 29 e~~~sfIqi~LP~~aT~GDKgKAN-EfckflAK~l~---geL~LFNG 71 (79)
T 1t6a_A 29 AGEETFIDIALPPGATHGDKGKAN-EFSKWLAKTLG---GELHLFSG 71 (79)
T ss_dssp ETTEEEEEEECCTTCCHHHHHHHH-HHHHHHHHHHC---EEEECTTS
T ss_pred CCCEEEEEEECCCCCCCCCCHHHH-HHHHHHHHHHH---CEEEEECC
T ss_conf 786046999879998777622276-89999999741---01477537
No 4
>>1t3q_B Quinoline 2-oxidoreductase large subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} (B:482-633)
Probab=74.11 E-value=7.2 Score=20.02 Aligned_cols=46 Identities=9% Similarity=0.117 Sum_probs=39.1
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHEEEEECCCCCE
Q ss_conf 7679999963876797889999999998299844479983557780
Q gi|254780231|r 29 TIHMKIKVTATPQKGKANKAMLAMLAKKLALSKSSLRMLSKQSSPL 74 (98)
Q Consensus 29 ~~~lkv~v~ApPv~GkAN~ali~~Lak~l~v~ks~I~I~~G~~sr~ 74 (98)
++.+.|.+.+....-=.+..+....|+.|++|..+|.+..|-|++-
T Consensus 13 DG~v~v~~~~~d~GQG~~T~~~qivAe~Lgip~d~V~v~~~DT~~p 58 (152)
T 1t3q_B 13 TGKVTVTTSLASSGQGHETTLAQIAADVLGVPASDVVIQAGSTKNT 58 (152)
T ss_dssp TSCEEEEESCCCSSSCHHHHHHHHHHHHHTSCGGGEEEECSBTTSC
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCC
T ss_conf 8971367730334332203566666886189811044563478776
No 5
>>3hrd_B Nicotinate dehydrogenase medium molybdopterin subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri} (B:20-172)
Probab=71.44 E-value=8.3 Score=19.64 Aligned_cols=47 Identities=13% Similarity=0.074 Sum_probs=40.7
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHEEEEECCCCCEE
Q ss_conf 76799999638767978899999999982998444799835577806
Q gi|254780231|r 29 TIHMKIKVTATPQKGKANKAMLAMLAKKLALSKSSLRMLSKQSSPLK 75 (98)
Q Consensus 29 ~~~lkv~v~ApPv~GkAN~ali~~Lak~l~v~ks~I~I~~G~~sr~K 75 (98)
++.+.|.+......-=....+..+.|+.|++|..+|++..|-|.+.-
T Consensus 14 DG~v~v~~g~~e~GqG~~T~~aqivAe~Lgi~~e~V~v~~~DT~~~p 60 (153)
T 3hrd_B 14 DGSANVMFGAADIGQGSGTAMAQIAAEELGLDYEKIHVTWGDTMVTP 60 (153)
T ss_dssp TSCEEEEECCCCSSSCHHHHHHHHHHHHHTCCGGGEEEEESBTTTSC
T ss_pred CCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHHEEEECCCCCCCC
T ss_conf 98099998994788678899999999997899899188624666688
No 6
>>1v97_A XD, xanthine dehydrogenase; molybdopterin, FYX-051, reaction intermediate, oxidoreductase; HET: MTE FAD FYX; 1.94A {Bos taurus} (A:1012-1137)
Probab=71.09 E-value=7.1 Score=20.03 Aligned_cols=47 Identities=11% Similarity=0.113 Sum_probs=39.5
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHEEEEECCCCCEE
Q ss_conf 76799999638767978899999999982998444799835577806
Q gi|254780231|r 29 TIHMKIKVTATPQKGKANKAMLAMLAKKLALSKSSLRMLSKQSSPLK 75 (98)
Q Consensus 29 ~~~lkv~v~ApPv~GkAN~ali~~Lak~l~v~ks~I~I~~G~~sr~K 75 (98)
++.+.|.+......-=....+..+.|+.|++|.++|+++.|-|++..
T Consensus 15 dG~v~v~~g~~e~GQG~~T~~~qi~Ae~Lgi~~~~V~v~~~DT~~~p 61 (126)
T 1v97_A 15 DGSVLVSHGGTEMGQGLHTKMVQVASKALKIPISKIYISETSTNTVP 61 (126)
T ss_dssp TSCEEEEESCCCSSSCHHHHHHHHHHHHHTSCGGGEECCCEETTTSC
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHHEEEECCCCCCCC
T ss_conf 98789985775678775789999999996998776899716877788
No 7
>>1mow_A Chimera of homing endonuclease I-DMOI and DNA endonuclease I-CREI; laglidadg, engineering, design, structure, hydrolase/DNA complex; 2.40A {Desulfurococcus mobilis} (A:1-116)
Probab=67.36 E-value=8.9 Score=19.46 Aligned_cols=45 Identities=11% Similarity=0.237 Sum_probs=32.1
Q ss_pred CCCEEEEEEECCCCCCHHH--HHHHHHHHHHHCCCHHHEEEEECCCCC
Q ss_conf 7767999996387679788--999999999829984447998355778
Q gi|254780231|r 28 DTIHMKIKVTATPQKGKAN--KAMLAMLAKKLALSKSSLRMLSKQSSP 73 (98)
Q Consensus 28 ~~~~lkv~v~ApPv~GkAN--~ali~~Lak~l~v~ks~I~I~~G~~sr 73 (98)
.+..++|-++...+.=--| .-+.+||-+.|++ ||.|.|++|.|--
T Consensus 32 ~RtEYRVViTQK~e~~~~~~ia~~~~~Ll~EL~~-kSkvQvi~G~tR~ 78 (116)
T 1mow_A 32 NRSEYRVVITQKSENLIKQFIAPRMQFLIDELNV-KSKIQIVKGDTRY 78 (116)
T ss_dssp TEEEEEEEEEESCHHHHHHHHHHHHHHHHHHHTC-CSCEEEEECSSCE
T ss_pred CCCEEEEEEEEEHHHHHHHHHHHHEEEECCCCCH-HHHHHHHCCCCCC
T ss_conf 8641899999704989997664507875141353-3656674597234
No 8
>>2w3s_B Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 1jrp_B* 2w3r_B* 1jro_B* 2w54_B* 2w55_B* (B:462-606)
Probab=65.50 E-value=11 Score=18.90 Aligned_cols=47 Identities=13% Similarity=0.155 Sum_probs=38.8
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHEEEEECCCCCEE
Q ss_conf 76799999638767978899999999982998444799835577806
Q gi|254780231|r 29 TIHMKIKVTATPQKGKANKAMLAMLAKKLALSKSSLRMLSKQSSPLK 75 (98)
Q Consensus 29 ~~~lkv~v~ApPv~GkAN~ali~~Lak~l~v~ks~I~I~~G~~sr~K 75 (98)
++.+.+.+......--....+....|+.|++|-.+|++..|-|+..-
T Consensus 15 DG~v~v~~g~~e~GQG~~T~~aqi~Ae~LGi~~~~V~v~~~DT~~~p 61 (145)
T 2w3s_B 15 DGSVALNHGGTEMGQGLHAKMVQVAAAVLGIDPVQVRITATDTSKVP 61 (145)
T ss_dssp TSCEEEEESCCCSSSCHHHHHHHHHHHHHTSCGGGEEECCEETTTSC
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
T ss_conf 99779983675677867889999999996899626999827987788
No 9
>>1dpt_A D-dopachrome tautomerase; cytokine, growth factor; 1.54A {Homo sapiens} (A:1-104)
Probab=65.25 E-value=9.6 Score=19.26 Aligned_cols=57 Identities=16% Similarity=0.251 Sum_probs=36.4
Q ss_pred EEEEEECCCCCCEEEEECCCCCCCCCCEEEEEEECCC-----CC-CHHHHHHHHHHHHHHCCCHHHEEEEE
Q ss_conf 9999941866530231014566677767999996387-----67-97889999999998299844479983
Q gi|254780231|r 4 VIVRLIPNAKKSGIASLEIPKDTSDTIHMKIKVTATP-----QK-GKANKAMLAMLAKKLALSKSSLRMLS 68 (98)
Q Consensus 4 i~v~V~P~a~~~~I~g~~~~~d~~~~~~lkv~v~ApP-----v~-GkAN~ali~~Lak~l~v~ks~I~I~~ 68 (98)
|.|.+.|+..-. .. |..+...-+.|++.. ++ -+-.+++++||.+.|+||+.+|-|..
T Consensus 37 imV~v~~~~~m~-fg-------Gs~~P~a~~~i~sig~~~~~e~n~~~s~~i~~~l~~~LgI~~dRiyI~f 99 (104)
T 1dpt_A 37 VNVTVRPGLAMA-LS-------GSTEPCAQLSISSIGVVGTAEDNRSHSAHFFEFLTKELALGQDRILIRF 99 (104)
T ss_dssp CEEEEECSCCCC-BT-------TBCSSCEEEEEEEESSSCSHHHHHHHHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EEEEEECCEEEE-EC-------CCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 999993546689-76-------8889789999999658686677799999999999998297922199999
No 10
>>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} (A:1-104)
Probab=62.03 E-value=12 Score=18.67 Aligned_cols=57 Identities=14% Similarity=0.230 Sum_probs=36.5
Q ss_pred EEEEEECCCCCCEEEEECCCCCCCCCCEEEEEEECCC-CCC----HHHHHHHHHHHHHHCCCHHHEEEEE
Q ss_conf 9999941866530231014566677767999996387-679----7889999999998299844479983
Q gi|254780231|r 4 VIVRLIPNAKKSGIASLEIPKDTSDTIHMKIKVTATP-QKG----KANKAMLAMLAKKLALSKSSLRMLS 68 (98)
Q Consensus 4 i~v~V~P~a~~~~I~g~~~~~d~~~~~~lkv~v~ApP-v~G----kAN~ali~~Lak~l~v~ks~I~I~~ 68 (98)
|.|.+.|+..- .+ .|..+...-+.+++-. .+. +..+++++||.+.|+||+.+|-|..
T Consensus 38 imv~i~~~~~m----~f----gGs~~P~a~~~i~sig~~~~~~n~~~s~~i~~~l~~~LgI~~dRiyI~F 99 (104)
T 1uiz_A 38 IAIHIVPDQIM----SF----GDSTDPCAVCSLCSIGKIGGPQNKSYTKLLCDILTKQLNIPANRVYINY 99 (104)
T ss_dssp CEEEEECSCEE----EE----TTBCSSCEEEEEEESSCCSHHHHHHHHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEEECCCCCE----EE----CCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 99997289617----96----6889968999999976889678799999999999997298923299999
No 11
>>3fwt_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.90A {Leishmania major} (A:1-125)
Probab=60.40 E-value=13 Score=18.51 Aligned_cols=59 Identities=8% Similarity=0.080 Sum_probs=34.6
Q ss_pred EEEEEECCCCCCEEEEECCCCCCCCCCEEEEEEECCC-CCCH----HHHHHHHHHHHHHCCCHHHEEEEECC
Q ss_conf 9999941866530231014566677767999996387-6797----88999999999829984447998355
Q gi|254780231|r 4 VIVRLIPNAKKSGIASLEIPKDTSDTIHMKIKVTATP-QKGK----ANKAMLAMLAKKLALSKSSLRMLSKQ 70 (98)
Q Consensus 4 i~v~V~P~a~~~~I~g~~~~~d~~~~~~lkv~v~ApP-v~Gk----AN~ali~~Lak~l~v~ks~I~I~~G~ 70 (98)
|.|.+.++..- ... |..+...-+.+++-. .+.. -.+++++||.+.|+||+.+|-|..=.
T Consensus 59 ImV~v~~~~~m-~fg-------Gs~eP~a~v~i~sig~~~~~~n~~~s~~i~~~l~~~LgI~~dRiyI~F~d 122 (125)
T 3fwt_A 59 VMTAFSDKTPI-SFQ-------GSTAPAAYVRVESWGEYAPSKPKMMTPRIAAAITKECGIPAERIYVFYYS 122 (125)
T ss_dssp CEEEEECSCCC-CBT-------TBCSSCEEEEEEEEECCCTHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred EEEEEECCCEE-EEC-------CCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEC
T ss_conf 99998079517-965-------77996799999995289989999999999999999839895508999980
No 12
>>1rm6_A 4-hydroxybenzoyl-COA reductase alpha subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} (A:28-142,A:191-283,A:453-609)
Probab=59.39 E-value=14 Score=18.24 Aligned_cols=48 Identities=17% Similarity=0.104 Sum_probs=41.9
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHEEEEECCCCCEEE
Q ss_conf 767999996387679788999999999829984447998355778069
Q gi|254780231|r 29 TIHMKIKVTATPQKGKANKAMLAMLAKKLALSKSSLRMLSKQSSPLKI 76 (98)
Q Consensus 29 ~~~lkv~v~ApPv~GkAN~ali~~Lak~l~v~ks~I~I~~G~~sr~K~ 76 (98)
++.+.|++......-=.+..+-...|+.|++|-.+|++..|-|++.-.
T Consensus 225 DG~v~v~~g~~e~GQG~~T~~aqiaAe~Lgi~~d~V~v~~~DT~~~p~ 272 (365)
T 1rm6_A 225 DGGITLLTGAADIGQGSNTMASQVAAEVLGVRLSRIRVISADSALTPK 272 (365)
T ss_dssp TCCEEEEECCCCSSSCHHHHHHHHHHHHHTCCGGGEEEEESBTTTSCC
T ss_pred CCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 962999958755676304467777887508753224310246664302
No 13
>>1n62_B Carbon monoxide dehydrogenase large chain; CODH, copper, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans OM5} (B:1-33,B:499-653)
Probab=58.84 E-value=15 Score=18.18 Aligned_cols=48 Identities=8% Similarity=0.120 Sum_probs=40.9
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHEEEEECCCCCEEE
Q ss_conf 767999996387679788999999999829984447998355778069
Q gi|254780231|r 29 TIHMKIKVTATPQKGKANKAMLAMLAKKLALSKSSLRMLSKQSSPLKI 76 (98)
Q Consensus 29 ~~~lkv~v~ApPv~GkAN~ali~~Lak~l~v~ks~I~I~~G~~sr~K~ 76 (98)
++.+.|.+......-=....+....|+.|++|..+|++..|-|....-
T Consensus 51 DG~V~v~~g~~e~GQG~~T~laQivAe~LGi~~e~V~v~~~DT~~~p~ 98 (188)
T 1n62_B 51 TGSVIARMGTKSQGQGHETTYAQIIATELGIPADDIMIEEGNTDTAPY 98 (188)
T ss_dssp TSCEEEEESCCCSSSCHHHHHHHHHHHHHTCCGGGEEEECCBTTTSCC
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCHHHEEECCCCCCCCCC
T ss_conf 896888634556788720477777699859988998865687787889
No 14
>>3djh_A Macrophage migration inhibitory factor; homotrimer, cytokine, inflammatory response, isomerase, phosphoprotein; 1.25A {Homo sapiens} PDB: 1ca7_A* 1ljt_A* 2ooh_A* 2ooz_A* 3b9s_A* 2oow_A* 3ce4_A 3dji_A* 1gd0_A* 1gcz_A* 3jsf_A* 3jsg_A* 3jtu_A* 3hof_A* 1gif_A 1mif_A 1p1g_A 1cgq_A 2gdg_A 1mfi_A ... (A:1-103)
Probab=58.21 E-value=15 Score=18.11 Aligned_cols=57 Identities=16% Similarity=0.231 Sum_probs=36.6
Q ss_pred EEEEEECCCCCCEEEEECCCCCCCCCCEEEEEEECCC-CCCH----HHHHHHHHHHHHHCCCHHHEEEEE
Q ss_conf 9999941866530231014566677767999996387-6797----889999999998299844479983
Q gi|254780231|r 4 VIVRLIPNAKKSGIASLEIPKDTSDTIHMKIKVTATP-QKGK----ANKAMLAMLAKKLALSKSSLRMLS 68 (98)
Q Consensus 4 i~v~V~P~a~~~~I~g~~~~~d~~~~~~lkv~v~ApP-v~Gk----AN~ali~~Lak~l~v~ks~I~I~~ 68 (98)
|.|.+.|+..- -+ .|..+....+.|++.. .+.. -.+++++||.+.|+||+.+|-|..
T Consensus 37 imv~i~~~~~m----~f----gGs~~P~a~~~i~sig~~~~~~n~~~s~~i~~~l~~~LgI~~~Riyi~F 98 (103)
T 3djh_A 37 IAVHVVPDQLM----AF----GGSSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLAERLRISPDRVYINY 98 (103)
T ss_dssp CEEEEECSCEE----EE----TTBCSSCEEEEEEESSCCSHHHHHHHHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEEEECCCCE----EE----CCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 99999489727----97----3789977999999966889788999999999999997197945399999
No 15
>>3fwu_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.80A {Leishmania major} (A:1-124)
Probab=56.53 E-value=14 Score=18.29 Aligned_cols=57 Identities=12% Similarity=0.092 Sum_probs=33.0
Q ss_pred EEEEEECCCCCCEEEEECCCCCCCCCCEEEEEEECCC-CCCH----HHHHHHHHHHHHHCCCHHHEEEEE
Q ss_conf 9999941866530231014566677767999996387-6797----889999999998299844479983
Q gi|254780231|r 4 VIVRLIPNAKKSGIASLEIPKDTSDTIHMKIKVTATP-QKGK----ANKAMLAMLAKKLALSKSSLRMLS 68 (98)
Q Consensus 4 i~v~V~P~a~~~~I~g~~~~~d~~~~~~lkv~v~ApP-v~Gk----AN~ali~~Lak~l~v~ks~I~I~~ 68 (98)
|.|.+.|+..-. .. |..+...-+.+++-. .+.. --+++++||.+.|+||+.+|-|..
T Consensus 59 imV~i~~~~~m~-fg-------Gs~eP~a~v~i~sig~~~~~~n~~~s~~i~~~l~~~LgI~~dRiyI~F 120 (124)
T 3fwu_A 59 VMMTFHDSTPMH-FF-------GSTDPVACVRVEALGGYGPSEPEKVTSIVTAAITKECGIVADRIFVLY 120 (124)
T ss_dssp CEEEEECSCCCC-BT-------TBCSSCEEEEEECTTCCCTTHHHHHHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEEEECCCCEE-EC-------CCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 899981786479-56-------889973799999961899889999999999999987299944299999
No 16
>>1ffv_B CUTL, molybdoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} (B:1-30,B:493-647)
Probab=55.30 E-value=17 Score=17.82 Aligned_cols=49 Identities=10% Similarity=0.083 Sum_probs=40.9
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHEEEEECCCCCEEEE
Q ss_conf 7679999963876797889999999998299844479983557780699
Q gi|254780231|r 29 TIHMKIKVTATPQKGKANKAMLAMLAKKLALSKSSLRMLSKQSSPLKII 77 (98)
Q Consensus 29 ~~~lkv~v~ApPv~GkAN~ali~~Lak~l~v~ks~I~I~~G~~sr~K~i 77 (98)
++.+.|.+......-=-...+....|+.|++|-.+|++..|-|+..-.=
T Consensus 48 DG~v~v~~g~~e~GQG~~T~laqIaAe~Lgi~~d~V~v~~gDT~~~p~~ 96 (185)
T 1ffv_B 48 TGSAIARMGTITQGQGHQTTYAQIIATELGIPSEVIQVEEGDTSTAPYG 96 (185)
T ss_dssp TSCEEEEESCCCSSSCHHHHHHHHHHHHHTCCGGGEEEECCBTTTSCCC
T ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCC
T ss_conf 8968997345456887400257889998589830789852688877788
No 17
>>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major} (A:1-103)
Probab=52.69 E-value=18 Score=17.57 Aligned_cols=57 Identities=12% Similarity=0.079 Sum_probs=38.4
Q ss_pred EEEEEECCCCCCEEEEECCCCCCCCCCEEEEEEECCC-CCCH----HHHHHHHHHHHHHCCCHHHEEEEE
Q ss_conf 9999941866530231014566677767999996387-6797----889999999998299844479983
Q gi|254780231|r 4 VIVRLIPNAKKSGIASLEIPKDTSDTIHMKIKVTATP-QKGK----ANKAMLAMLAKKLALSKSSLRMLS 68 (98)
Q Consensus 4 i~v~V~P~a~~~~I~g~~~~~d~~~~~~lkv~v~ApP-v~Gk----AN~ali~~Lak~l~v~ks~I~I~~ 68 (98)
|.|.+.|+..-. . .|..+...-+.|++-. .+.. -.+++++||.+.||||+.+|-|..
T Consensus 38 imv~v~~~~~m~-f-------gGs~~P~a~~~i~siG~~~~~~n~~~s~~i~~~l~~~LgI~~~RiyI~F 99 (103)
T 3b64_A 38 VMMTFHDSTPMH-F-------FGSTDPVACVRVEALGGYGPSEPEKVTSIVTAAITKECGIVADRIFVLY 99 (103)
T ss_dssp CEEEEECSCCCC-B-------TTBCSSCEEEEEECTTCCCTTHHHHHHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEEEECCCCEE-E-------CCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 999995683179-6-------4889988999999965899788899999999999987399966089999
No 18
>>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 2wkf_A* (A:)
Probab=49.21 E-value=20 Score=17.37 Aligned_cols=46 Identities=9% Similarity=0.129 Sum_probs=30.8
Q ss_pred CCCEEEEEEECCC-----CCCHHHHHHHHHHHHHHCCCHHHEEEEECCCCC
Q ss_conf 7767999996387-----679788999999999829984447998355778
Q gi|254780231|r 28 DTIHMKIKVTATP-----QKGKANKAMLAMLAKKLALSKSSLRMLSKQSSP 73 (98)
Q Consensus 28 ~~~~lkv~v~ApP-----v~GkAN~ali~~Lak~l~v~ks~I~I~~G~~sr 73 (98)
.....-+.++.-. .+-+--++++++|++.||+|+.+|.|..-..++
T Consensus 54 ~~p~~~v~i~~~g~~~~e~k~~~~~~i~~~l~~~lgi~~~~i~I~~~e~~~ 104 (125)
T 2wkb_A 54 NEGYCFVRLTSIGGINRSNNSLLADKITKILSNHLSVKPRRVYIEFRDCSA 104 (125)
T ss_dssp CSSCEEEEEECC-----CTHHHHHHHHHHHHHHHHCCCGGGEEEEEEC---
T ss_pred CCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEECCH
T ss_conf 997599999996077826689999999999998719893349999997789
No 19
>>2vs7_A I-DMOI, homing endonuclease I-DMOI; protein/nucleic acid crystallography; 2.05A {Desulfurococcus mobilis} PDB: 2vs8_A 1b24_A (A:1-120)
Probab=48.44 E-value=22 Score=17.17 Aligned_cols=45 Identities=13% Similarity=0.302 Sum_probs=31.8
Q ss_pred CCCEEEEEEECCCCCC-HHHH-HHHHHHHHHHCCCHHHEEEEECCCCC
Q ss_conf 7767999996387679-7889-99999999829984447998355778
Q gi|254780231|r 28 DTIHMKIKVTATPQKG-KANK-AMLAMLAKKLALSKSSLRMLSKQSSP 73 (98)
Q Consensus 28 ~~~~lkv~v~ApPv~G-kAN~-ali~~Lak~l~v~ks~I~I~~G~~sr 73 (98)
.+..++|-++...+.- +-|. -+.+||-+.|++ ||.|.|++|.|--
T Consensus 32 ~RtEYRVViTQK~e~~i~~~~a~~~~~Ll~EL~~-kSkvQvi~G~tR~ 78 (120)
T 2vs7_A 32 NRSEYRVVITQKSENLIKQHIAPLMQFLIDELNV-KSKIQIVKGDTRY 78 (120)
T ss_dssp SCEEEEEEEEESCHHHHHHTHHHHHHHHHHHTTC-CCCEEEEECSSCE
T ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCC-CCCEEEECCCCEE
T ss_conf 6553189994276767999999999998887376-7644786589708
No 20
>>1szw_A TRNA pseudouridine synthase D; novel fold, RNA modification, TRUD, structural proteomics in europe, spine, structural genomics lyase; 2.00A {Escherichia coli} (A:1-183,A:326-379)
Probab=47.59 E-value=20 Score=17.31 Aligned_cols=43 Identities=16% Similarity=0.274 Sum_probs=34.7
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHEEEEECCCCCE
Q ss_conf 77679999963876797889999999998299844479983557780
Q gi|254780231|r 28 DTIHMKIKVTATPQKGKANKAMLAMLAKKLALSKSSLRMLSKQSSPL 74 (98)
Q Consensus 28 ~~~~lkv~v~ApPv~GkAN~ali~~Lak~l~v~ks~I~I~~G~~sr~ 74 (98)
.|+.+.+.|. -.|.-...+++.||+.++||.++|+. .|.+.|.
T Consensus 62 ~Ge~~~f~l~---K~~~dT~~a~~~LAk~l~i~~~~i~y-AGlKDk~ 104 (237)
T 1szw_A 62 EGEHILVRIL---KNGCNTRFVADALAKFLKIHAREVSF-AGQKDKH 104 (237)
T ss_dssp CSSEEEEEEE---ESSSCHHHHHHHHHHHTTCCGGGEEE-SCCCCTT
T ss_pred CCCEEEEEEE---ECCCCHHHHHHHHHHHHCCCHHHEEE-CCCCCCC
T ss_conf 7578999999---88999999999999984988665415-4156587
No 21
>>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans} (A:630-750)
Probab=46.68 E-value=23 Score=17.00 Aligned_cols=48 Identities=8% Similarity=0.097 Sum_probs=39.7
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHH---CCCHHHEEEEECCCCCEEE
Q ss_conf 76799999638767978899999999982---9984447998355778069
Q gi|254780231|r 29 TIHMKIKVTATPQKGKANKAMLAMLAKKL---ALSKSSLRMLSKQSSPLKI 76 (98)
Q Consensus 29 ~~~lkv~v~ApPv~GkAN~ali~~Lak~l---~v~ks~I~I~~G~~sr~K~ 76 (98)
++.+.|.+.....--=....+..++|+.| ++|..+|++..|-|.+...
T Consensus 14 dG~v~v~~g~~e~GQG~~T~~~qi~Ae~L~~~Gi~~~~I~v~~~DT~~~p~ 64 (121)
T 1dgj_A 14 DGSVTLGNSWEDHGQGADAGSLGTAHEALRPLGITPENIHLVMNDTSKTPN 64 (121)
T ss_dssp TSCEEEEECCCCSSSCHHHHHHHHHHHHTGGGTCCGGGEEEEESBTTTSCC
T ss_pred CCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCHHHEEEEECCCCCCCC
T ss_conf 937999978756678703789999999999849997676997078788899
No 22
>>1mww_A Hypothetical protein HI1388.1; structural genomics, structure 2 function project, S2F, unknown function; HET: GLU; 2.08A {Haemophilus influenzae} (A:)
Probab=43.97 E-value=25 Score=16.75 Aligned_cols=44 Identities=14% Similarity=0.140 Sum_probs=28.6
Q ss_pred CCCEEEEEEECCCC-CCHH----HHHHHHHHHHHHCCCHHHEEEEECCC
Q ss_conf 77679999963876-7978----89999999998299844479983557
Q gi|254780231|r 28 DTIHMKIKVTATPQ-KGKA----NKAMLAMLAKKLALSKSSLRMLSKQS 71 (98)
Q Consensus 28 ~~~~lkv~v~ApPv-~GkA----N~ali~~Lak~l~v~ks~I~I~~G~~ 71 (98)
.....-+.++...- ..+. -+++.++|++.|++|+.+|.|.--+.
T Consensus 56 ~~~~~~v~i~~~~g~~~e~k~~l~~~i~~~l~~~lgi~~~~v~i~~~e~ 104 (128)
T 1mww_A 56 SDDYTVIEINLMAGRMEGTKKRLIKMLFSELEYKLGIRAHDVEITIKEQ 104 (128)
T ss_dssp CTTCEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEEE
T ss_pred CCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCHHHEEEEEEEC
T ss_conf 8987999999668999999999999999999988196952599999985
No 23
>>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, hydrolase, inner membrane, membrane; 2.10A {Escherichia coli K12} (A:)
Probab=43.43 E-value=25 Score=16.82 Aligned_cols=59 Identities=8% Similarity=0.139 Sum_probs=42.6
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHEEEEECCCCCEE-------EEEECCCHHHHHHHHHHHH
Q ss_conf 76799999638767978899999999982998444799835577806-------9998299899999997523
Q gi|254780231|r 29 TIHMKIKVTATPQKGKANKAMLAMLAKKLALSKSSLRMLSKQSSPLK-------IIYIDKDCKEITELLQNND 94 (98)
Q Consensus 29 ~~~lkv~v~ApPv~GkAN~ali~~Lak~l~v~ks~I~I~~G~~sr~K-------~i~I~~~~~~i~~~L~~~~ 94 (98)
+..+++... ...|..-++.-|++.|++ +++|+.|.-...+ ++.+.|+.+++.+.++...
T Consensus 21 ~~lirl~f~----g~~~~~piis~l~~~~~v---~vnIL~g~i~~i~~~~~G~l~v~l~G~~~~~~~ai~~L~ 86 (106)
T 3dhx_A 21 VPMLRLEFT----GQSVDAPLLSETARRFNV---NNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQ 86 (106)
T ss_dssp EEEEEEEEE----EECTTCCHHHHHHHHSCC---EEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHH
T ss_pred CEEEEEEEC----CCCCCCHHHHHHHHHHCC---CEEEEEEEEEECCCEEEEEEEEEECCCHHHHHHHHHHHH
T ss_conf 359999981----886586499999998699---789999863771880079999996299899999999999
No 24
>>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} (A:1-103)
Probab=39.48 E-value=30 Score=16.33 Aligned_cols=57 Identities=14% Similarity=0.114 Sum_probs=36.1
Q ss_pred EEEEEECCCCCCEEEEECCCCCCCCCCEEEEEEECCC-CCCH----HHHHHHHHHHHHHCCCHHHEEEEE
Q ss_conf 9999941866530231014566677767999996387-6797----889999999998299844479983
Q gi|254780231|r 4 VIVRLIPNAKKSGIASLEIPKDTSDTIHMKIKVTATP-QKGK----ANKAMLAMLAKKLALSKSSLRMLS 68 (98)
Q Consensus 4 i~v~V~P~a~~~~I~g~~~~~d~~~~~~lkv~v~ApP-v~Gk----AN~ali~~Lak~l~v~ks~I~I~~ 68 (98)
|.|.+.|+..- -+. |..+...-+.|++-. .+.. -.+++++||++.|+||+.+|-|..
T Consensus 37 imv~i~~~~~m----~fg----Gs~~P~a~~~i~siG~~~~~~n~~~s~~i~~~l~~~LgI~~driyI~f 98 (103)
T 1hfo_A 37 VAVHINTDQQL----SFG----GSTNPAAFGTLMSIGGIEPSRNRDHSAKLFDHLNTKLGIPKNRMYIHF 98 (103)
T ss_dssp CEEEEECSCEE----EET----TBCSSCEEEEEEESSSCSHHHHHHHHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEEEECCCCE----EEC----CCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 99998179508----977----889967999999923899889999999999999997098944299999
No 25
>>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis V583} (A:)
Probab=32.42 E-value=39 Score=15.65 Aligned_cols=61 Identities=7% Similarity=0.147 Sum_probs=43.4
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHEEEEECCCCCEE-------EEEECCCHHHHHHHHHHHHH
Q ss_conf 776799999638767978899999999982998444799835577806-------99982998999999975230
Q gi|254780231|r 28 DTIHMKIKVTATPQKGKANKAMLAMLAKKLALSKSSLRMLSKQSSPLK-------IIYIDKDCKEITELLQNNDS 95 (98)
Q Consensus 28 ~~~~lkv~v~ApPv~GkAN~ali~~Lak~l~v~ks~I~I~~G~~sr~K-------~i~I~~~~~~i~~~L~~~~s 95 (98)
.+..+++... +..+.+-++.-|++.|++ ++.|+.|.-.... ++.+.|+.+++.+.++...+
T Consensus 22 ~~~li~l~f~----g~~~~~pvis~l~~~~~v---~vnIL~g~i~~i~~~~~G~l~l~l~g~~~~~~~al~~L~~ 89 (100)
T 2qsw_A 22 NGKIVRLLFH----GEQAKLPIISHIVQEYQV---EVSIIQGNIQQTKQGAVGSLYIQLLGEEQNILAAIEGLRK 89 (100)
T ss_dssp SSEEEEEEEE----SCSCSSCHHHHHHHHHTC---EEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHH
T ss_pred CCEEEEEEEC----CCCCCCCHHHHHHHHHCC---CEEEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHHHH
T ss_conf 9889999985----986586599999998499---4899988617728921799999996899999999999998
No 26
>>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} (A:)
Probab=30.41 E-value=42 Score=15.44 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHCCCHHHEEEEEC
Q ss_conf 99999999982998444799835
Q gi|254780231|r 47 KAMLAMLAKKLALSKSSLRMLSK 69 (98)
Q Consensus 47 ~ali~~Lak~l~v~ks~I~I~~G 69 (98)
+++.+.+++.+|+|+.+|.++--
T Consensus 21 ~~it~~~~~~lg~~~~~v~V~i~ 43 (62)
T 1otf_A 21 RQVSEAMANSLDAPLERVRVLIT 43 (62)
T ss_dssp HHHHHHHHHHHTCCGGGCEEEEE
T ss_pred HHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 99999999984959024999999
No 27
>>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode, hookworm; 1.60A {Ancylostoma ceylanicum} (A:1-104)
Probab=29.72 E-value=43 Score=15.37 Aligned_cols=57 Identities=12% Similarity=0.184 Sum_probs=36.9
Q ss_pred EEEEEECCCCCCEEEEECCCCCCCCCCEEEEEEECCC-CCC----HHHHHHHHHHHHHHCCCHHHEEEEE
Q ss_conf 9999941866530231014566677767999996387-679----7889999999998299844479983
Q gi|254780231|r 4 VIVRLIPNAKKSGIASLEIPKDTSDTIHMKIKVTATP-QKG----KANKAMLAMLAKKLALSKSSLRMLS 68 (98)
Q Consensus 4 i~v~V~P~a~~~~I~g~~~~~d~~~~~~lkv~v~ApP-v~G----kAN~ali~~Lak~l~v~ks~I~I~~ 68 (98)
|.|.+.|+..-. .. |..+...-+.|++-- .+. +-.+++++||.++|+||..+|-|..
T Consensus 38 imv~i~~~~~m~-fg-------Gs~~P~a~~~i~sig~~~~~~n~~~s~~i~~~l~~~LgI~~~RiyI~f 99 (104)
T 2os5_A 38 IAIEVLAGQRIT-HG-------ASRNPVAVIKVESIGALSADDNIRHTQKITQFCQDTLKLPKDKVIITY 99 (104)
T ss_dssp CEEEEECSCCCC-BT-------TBCSSCEEEEEEESSCCCHHHHHHHHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEEEECCEEEE-EC-------CCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCHHHEEEEE
T ss_conf 899973340388-76-------889974799999964899789899999999999987095943299999
No 28
>>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.50A {Escherichia coli} (A:49-262)
Probab=28.98 E-value=36 Score=15.86 Aligned_cols=26 Identities=12% Similarity=0.102 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHCCCHHHEEEEECCC
Q ss_conf 89999999998299844479983557
Q gi|254780231|r 46 NKAMLAMLAKKLALSKSSLRMLSKQS 71 (98)
Q Consensus 46 N~ali~~Lak~l~v~ks~I~I~~G~~ 71 (98)
.+++.+.+++.++++..+|-+..|.+
T Consensus 12 ~~~lr~~la~~~~v~~d~i~it~G~~ 37 (214)
T 1fg7_A 12 PKAVIENYAQYAGVKPEQVLVSRGAD 37 (214)
T ss_dssp CHHHHHHHHHHHTSCGGGEEEESHHH
T ss_pred HHHHHHHHHHHHCCCHHHEEEECCHH
T ss_conf 99999999988784878899958899
No 29
>>1u2c_A Dystroglycan; IG-like domain, S6 like fold, protein binding; 2.30A {Mus musculus} (A:114-246)
Probab=27.92 E-value=46 Score=15.18 Aligned_cols=44 Identities=9% Similarity=0.136 Sum_probs=33.1
Q ss_pred EEEEEEE--CCCCCCHHHHHHHHHHHHHHCCCHHHEEEEECCCCCE
Q ss_conf 7999996--3876797889999999998299844479983557780
Q gi|254780231|r 31 HMKIKVT--ATPQKGKANKAMLAMLAKKLALSKSSLRMLSKQSSPL 74 (98)
Q Consensus 31 ~lkv~v~--ApPv~GkAN~ali~~Lak~l~v~ks~I~I~~G~~sr~ 74 (98)
.+.|-+. ..-...+.--++++-||++|++|++.+++......+.
T Consensus 18 vltiiLdad~~~L~p~~Rv~ll~~lA~f~~ip~~~~~L~p~~~~~l 63 (133)
T 1u2c_A 18 VLTVILDADLTKMTPKQRIDLLNRMQSFSEVELHNMKLVPVVNNRL 63 (133)
T ss_dssp EEEEEESCCGGGSCHHHHHHHHHHHHHHHCSCGGGCEEEECCTTCC
T ss_pred EEEEEECCCHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCE
T ss_conf 7899823887777812222226441001565426863454334431
No 30
>>1z2z_A Probable tRNA pseudouridine synthase D; alpha-beta protein., structural genomics, PSI, protein structure initiative; 2.60A {Methanosarcina mazei} (A:1-172,A:392-446)
Probab=24.60 E-value=54 Score=14.82 Aligned_cols=55 Identities=16% Similarity=0.227 Sum_probs=38.4
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHEEEEECCCCCE----EEEEECC-CHHHH
Q ss_conf 77679999963876797889999999998299844479983557780----6999829-98999
Q gi|254780231|r 28 DTIHMKIKVTATPQKGKANKAMLAMLAKKLALSKSSLRMLSKQSSPL----KIIYIDK-DCKEI 86 (98)
Q Consensus 28 ~~~~lkv~v~ApPv~GkAN~ali~~Lak~l~v~ks~I~I~~G~~sr~----K~i~I~~-~~~~i 86 (98)
.+.++.+.+.= .|--..+++..||+.|+++.++|.. .|.+.|. -.+.|.+ .++++
T Consensus 46 ~g~yl~f~L~K---~n~dT~~ai~~Lak~Lgi~~~~I~~-AG~KDKrAvTtQ~iSI~~~~~~~l 105 (227)
T 1z2z_A 46 EGKYLIVELTK---RDWDTHHLTRTLSRILQVSQKRISV-AGTKDKRALTTQKISIFDTDASEI 105 (227)
T ss_dssp CSSEEEEEEEE---ESCCHHHHHHHHHHHHTCCGGGEEE-SSCCCSSSEEEEEEEEETCCHHHH
T ss_pred CCCEEEEEEEE---CCCCHHHHHHHHHHHCCCCHHHEEE-CCCCCCCCCEEEEEECCCCCHHHH
T ss_conf 87879999998---8889999999999982998777305-444666532243442367997679
No 31
>>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_2* 3iam_2* 3ias_2* (2:22-71)
Probab=24.32 E-value=43 Score=15.35 Aligned_cols=19 Identities=5% Similarity=0.142 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHCCCHHHEE
Q ss_conf 9999999998299844479
Q gi|254780231|r 47 KAMLAMLAKKLALSKSSLR 65 (98)
Q Consensus 47 ~ali~~Lak~l~v~ks~I~ 65 (98)
.+.++.+|+.|++|.++|.
T Consensus 22 ~e~i~~iA~~l~vp~~~v~ 40 (50)
T 3i9v_2 22 PERIEEIARLVGTTPTEVM 40 (50)
T ss_dssp HHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHH
T ss_conf 8999999999795989998
No 32
>>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} (A:105-310)
Probab=20.57 E-value=65 Score=14.33 Aligned_cols=30 Identities=17% Similarity=0.239 Sum_probs=25.0
Q ss_pred CCCHHHHHHHHHHHHHHCCCHHHEEEEECC
Q ss_conf 679788999999999829984447998355
Q gi|254780231|r 41 QKGKANKAMLAMLAKKLALSKSSLRMLSKQ 70 (98)
Q Consensus 41 v~GkAN~ali~~Lak~l~v~ks~I~I~~G~ 70 (98)
.+...+.++.++|.+.|++.+.++-...|-
T Consensus 159 ~~~~mp~~l~~~L~~~l~l~~~dv~~~~gp 188 (206)
T 1xdp_A 159 YQRDMPNALVEVLREKLTISRYDSIVPGGR 188 (206)
T ss_dssp ECTTCCHHHHHHHHHHTTCCSSSEEEECCS
T ss_pred ECCCCCHHHHHHHHHHCCCCHHHHEEECCC
T ss_conf 336788899999999709985772010464
No 33
>>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* (C:)
Probab=20.01 E-value=26 Score=16.73 Aligned_cols=44 Identities=23% Similarity=0.253 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHCCCHHHEEEEECCCCCEEEEEECC--CHHHHHHHHHHH
Q ss_conf 8899999999982998444799835577806999829--989999999752
Q gi|254780231|r 45 ANKAMLAMLAKKLALSKSSLRMLSKQSSPLKIIYIDK--DCKEITELLQNN 93 (98)
Q Consensus 45 AN~ali~~Lak~l~v~ks~I~I~~G~~sr~K~i~I~~--~~~~i~~~L~~~ 93 (98)
--+++|++|++.+. .-|+|+ ..++.+.|+|+. +.++|.++|+..
T Consensus 494 e~~~~l~~l~~~~p---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (546)
T 2wvr_C 494 EMEKHLLLLSELLP---DWLSLH--RIRTDTYVKLDKAADLAHITARLAHQ 539 (546)
T ss_dssp ---------------------------------------------------
T ss_pred HHHHHHHHHHHHCC---CCEEEE--EECCCEEEEEECCCCHHHHHHHHHHH
T ss_conf 99999999998687---206998--62794589960217999999999999
Done!