HHSEARCH alignment of GI: 254780231 and SCOP domain: d1jrma_

Alignment

Probab=99.88  E-value=1.8e-23  Score=158.22  Aligned_cols=86  Identities=24%  Similarity=0.349  Sum_probs=77.6

Q ss_pred             EEEEEEEECCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHEEEEECCCCCEEEEEECC
Q ss_conf             05999994186653023101456667776799999638767978899999999982998444799835577806999829
Q gi|254780231|r    2 CNVIVRLIPNAKKSGIASLEIPKDTSDTIHMKIKVTATPQKGKANKAMLAMLAKKLALSKSSLRMLSKQSSPLKIIYIDK   81 (98)
Q Consensus         2 ~~i~v~V~P~a~~~~I~g~~~~~d~~~~~~lkv~v~ApPv~GkAN~ali~~Lak~l~v~ks~I~I~~G~~sr~K~i~I~~   81 (98)
                      +.|.|+|+|||++++|.|++     .|+++|+|+|+|||+||+||+||++|||++|+   |+|+|++|++||+|+++|.|
T Consensus        14 v~i~v~V~P~A~~~~i~g~~-----~~~~~l~V~v~app~dGkAN~ali~~Lak~lk---s~I~I~~G~tSR~K~i~I~g   85 (104)
T d1jrma_          14 LLVNIEVSPASGKFGIPSYN-----EWRKRIEVKIHSPPQKGKANREIIKEFSETFG---RDVEIVSGQKSRQKTIRIQG   85 (104)
T ss_dssp             EEEEEESCCCSSSCCCCCCC-----TTTTCCCCCCCTTCCCCCHHHHHHHHHHHHHS---SEEEECSCGGGSEEEEEEES
T ss_pred             EEEEEEEEECCCCCEEEEEC-----CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHC---CCEEEEECCCCCCEEEEEEC
T ss_conf             99999986099854464160-----77998999995699777689999999999868---98899846877850899908


Q ss_pred             -CHHHHHHHHHHHHH
Q ss_conf             -98999999975230
Q gi|254780231|r   82 -DCKEITELLQNNDS   95 (98)
Q Consensus        82 -~~~~i~~~L~~~~s   95 (98)
                       +.+++.++|+...-
T Consensus        86 ~~~~~~~~~L~~~lg  100 (104)
T d1jrma_          86 MGRDLFLKLVSEKFG  100 (104)
T ss_dssp             CCHHHHHHHHHHTSC
T ss_pred             CCHHHHHHHHHHHHC
T ss_conf             999999999999866

SCOP domain information

class: Alpha and beta proteins (a+b)
fold: YggU-like
superfamily: YggU-like
family: YggU-like
domain: Hypothetical protein MTH637
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]