Query gi|254780231|ref|YP_003064644.1| hypothetical protein CLIBASIA_00580 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 98 No_of_seqs 104 out of 559 Neff 5.4 Searched_HMMs 13730 Date Mon May 23 21:39:26 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780231.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1yh5a1 d.206.1.1 (A:1-100) Hy 99.9 1.8E-23 1.3E-27 158.3 7.5 74 2-82 15-88 (100) 2 d1jrma_ d.206.1.1 (A:) Hypothe 99.9 1.8E-23 1.3E-27 158.2 6.2 86 2-95 14-100 (104) 3 d1t6aa_ d.129.8.1 (A:) Rbstp22 69.2 1.5 0.00011 21.8 2.6 37 29-69 77-118 (124) 4 d1uiza_ d.80.1.3 (A:) Micropha 64.7 3.8 0.00028 19.3 4.0 60 4-71 38-102 (115) 5 d1jrob2 d.133.1.1 (B:124-777) 62.1 5.2 0.00038 18.5 5.0 46 29-74 353-398 (654) 6 d1dpta_ d.80.1.3 (A:) D-dopach 61.4 4.7 0.00034 18.8 3.9 58 4-69 37-100 (117) 7 d1b24a1 d.95.2.1 (A:7-99) DNA 59.4 4.7 0.00034 18.8 3.6 58 28-90 26-85 (93) 8 d1v97a5 d.133.1.1 (A:695-1332) 48.9 8.6 0.00063 17.2 4.4 46 29-74 332-377 (638) 9 d2gdga1 d.80.1.3 (A:1-114) Mic 48.2 8.9 0.00064 17.1 6.5 61 4-72 37-102 (114) 10 d3dhxa1 d.58.18.13 (A:2-100) M 44.9 9.2 0.00067 17.0 3.2 52 41-95 28-86 (99) 11 d2qswa1 d.58.18.13 (A:256-345) 42.6 9.8 0.00071 16.9 3.1 59 30-95 14-79 (90) 12 d1szwa_ d.265.1.4 (A:) tRNA ps 42.0 11 0.00081 16.6 3.4 43 28-74 40-82 (341) 13 d1rm6a2 d.133.1.1 (A:134-769) 39.8 12 0.00087 16.4 6.2 46 29-74 336-381 (636) 14 d1hfoa_ d.80.1.3 (A:) Micropha 39.6 12 0.00088 16.3 6.5 61 4-72 37-102 (113) 15 d1n62b2 d.133.1.1 (B:147-809) 34.2 15 0.0011 15.8 5.9 46 29-74 370-415 (663) 16 d1ffvb2 d.133.1.1 (B:147-803) 27.6 19 0.0014 15.1 5.9 46 29-74 364-409 (657) 17 d1mwwa_ d.80.1.4 (A:) Hypothet 25.1 21 0.0016 14.9 3.5 45 27-71 55-104 (120) 18 d1y7ea1 b.49.3.1 (A:101-233) P 24.7 22 0.0016 14.8 2.7 33 32-64 90-126 (133) 19 d1otfa_ d.80.1.1 (A:) 4-oxaloc 23.8 23 0.0016 14.7 3.1 23 46-68 20-42 (59) 20 d1xdpa2 d.322.1.2 (A:107-314) 23.3 21 0.0016 14.9 2.2 30 41-70 158-187 (208) 21 d2qrra1 d.58.18.13 (A:2-98) Me 22.8 24 0.0017 14.6 5.4 60 31-95 19-85 (97) No 1 >d1yh5a1 d.206.1.1 (A:1-100) Hypothetical protein YggU {Escherichia coli, o157 [TaxId: 562]} Probab=99.88 E-value=1.8e-23 Score=158.26 Aligned_cols=74 Identities=24% Similarity=0.341 Sum_probs=69.4 Q ss_pred EEEEEEEECCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHEEEEECCCCCEEEEEECC Q ss_conf 05999994186653023101456667776799999638767978899999999982998444799835577806999829 Q gi|254780231|r 2 CNVIVRLIPNAKKSGIASLEIPKDTSDTIHMKIKVTATPQKGKANKAMLAMLAKKLALSKSSLRMLSKQSSPLKIIYIDK 81 (98) Q Consensus 2 ~~i~v~V~P~a~~~~I~g~~~~~d~~~~~~lkv~v~ApPv~GkAN~ali~~Lak~l~v~ks~I~I~~G~~sr~K~i~I~~ 81 (98) +.|.|+|+|||++++|.|+ ++++|+|+|+|||+||+||+||++|||++|++|||+|+|++|++||+|+++|.+ T Consensus 15 v~i~v~V~P~ak~~~i~~~-------~~~~l~v~v~app~~GkAN~ali~~Lak~l~v~ks~I~I~~G~tSr~K~i~I~~ 87 (100) T d1yh5a1 15 LVLRLYIQPKASRDSIVGL-------HGDEVKVAITAPPVDGQANSHLVKFLGKQFRVAKSQVVIEKGELGRHKQIKIIN 87 (100) T ss_dssp EEEEEECCBSCSSCCCCCC-------CSSCEECCBSSCSCTTTHHHHHHHHHHHHHTCCTTTEEEEECCSSSEEEEEEES T ss_pred EEEEEEEEECCCCCCCCCC-------CCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCEEEEEEC T ss_conf 8999999759751432551-------199899999669977717899999999995997100899864777850899957 Q ss_pred C Q ss_conf 9 Q gi|254780231|r 82 D 82 (98) Q Consensus 82 ~ 82 (98) . T Consensus 88 ~ 88 (100) T d1yh5a1 88 P 88 (100) T ss_dssp C T ss_pred C T ss_conf 5 No 2 >d1jrma_ d.206.1.1 (A:) Hypothetical protein MTH637 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Probab=99.88 E-value=1.8e-23 Score=158.22 Aligned_cols=86 Identities=24% Similarity=0.349 Sum_probs=77.6 Q ss_pred EEEEEEEECCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHEEEEECCCCCEEEEEECC Q ss_conf 05999994186653023101456667776799999638767978899999999982998444799835577806999829 Q gi|254780231|r 2 CNVIVRLIPNAKKSGIASLEIPKDTSDTIHMKIKVTATPQKGKANKAMLAMLAKKLALSKSSLRMLSKQSSPLKIIYIDK 81 (98) Q Consensus 2 ~~i~v~V~P~a~~~~I~g~~~~~d~~~~~~lkv~v~ApPv~GkAN~ali~~Lak~l~v~ks~I~I~~G~~sr~K~i~I~~ 81 (98) +.|.|+|+|||++++|.|++ .|+++|+|+|+|||+||+||+||++|||++|+ |+|+|++|++||+|+++|.| T Consensus 14 v~i~v~V~P~A~~~~i~g~~-----~~~~~l~V~v~app~dGkAN~ali~~Lak~lk---s~I~I~~G~tSR~K~i~I~g 85 (104) T d1jrma_ 14 LLVNIEVSPASGKFGIPSYN-----EWRKRIEVKIHSPPQKGKANREIIKEFSETFG---RDVEIVSGQKSRQKTIRIQG 85 (104) T ss_dssp EEEEEESCCCSSSCCCCCCC-----TTTTCCCCCCCTTCCCCCHHHHHHHHHHHHHS---SEEEECSCGGGSEEEEEEES T ss_pred EEEEEEEEECCCCCEEEEEC-----CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHC---CCEEEEECCCCCCEEEEEEC T ss_conf 99999986099854464160-----77998999995699777689999999999868---98899846877850899908 Q ss_pred -CHHHHHHHHHHHHH Q ss_conf -98999999975230 Q gi|254780231|r 82 -DCKEITELLQNNDS 95 (98) Q Consensus 82 -~~~~i~~~L~~~~s 95 (98) +.+++.++|+...- T Consensus 86 ~~~~~~~~~L~~~lg 100 (104) T d1jrma_ 86 MGRDLFLKLVSEKFG 100 (104) T ss_dssp CCHHHHHHHHHHTSC T ss_pred CCHHHHHHHHHHHHC T ss_conf 999999999999866 No 3 >d1t6aa_ d.129.8.1 (A:) Rbstp2229 protein {Bacillus stearothermophilus [TaxId: 1422]} Probab=69.19 E-value=1.5 Score=21.76 Aligned_cols=37 Identities=35% Similarity=0.460 Sum_probs=24.7 Q ss_pred CCEEEEEEECCC-----CCCHHHHHHHHHHHHHHCCCHHHEEEEEC Q ss_conf 767999996387-----67978899999999982998444799835 Q gi|254780231|r 29 TIHMKIKVTATP-----QKGKANKAMLAMLAKKLALSKSSLRMLSK 69 (98) Q Consensus 29 ~~~lkv~v~ApP-----v~GkAN~ali~~Lak~l~v~ks~I~I~~G 69 (98) ++.--|.|.-|| .+|||| |.|+||||.|. ....+-.| T Consensus 77 ~e~sfIqi~LP~~AT~GDKgKAN-EfckfLAKkL~---geL~LFNG 118 (124) T d1t6aa_ 77 GEETFIDIALPPGATHGDKGKAN-EFSKWLAKTLG---GELHLFSG 118 (124) T ss_dssp TTEEEEEEECCTTCCHHHHHHHH-HHHHHHHHHHC---EEEECTTS T ss_pred CCEEEEEEECCCCCCCCCCHHHH-HHHHHHHHHHH---CEEEEECC T ss_conf 86146999879998877622276-89999999741---01467546 No 4 >d1uiza_ d.80.1.3 (A:) Microphage migration inhibition factor (MIF) {African clawed frog (Xenopus laevis) [TaxId: 8355]} Probab=64.70 E-value=3.8 Score=19.34 Aligned_cols=60 Identities=12% Similarity=0.157 Sum_probs=38.3 Q ss_pred EEEEEECCCCCCEEEEECCCCCCCCCCEEEEEEECCC-CC----CHHHHHHHHHHHHHHCCCHHHEEEEECCC Q ss_conf 9999941866530231014566677767999996387-67----97889999999998299844479983557 Q gi|254780231|r 4 VIVRLIPNAKKSGIASLEIPKDTSDTIHMKIKVTATP-QK----GKANKAMLAMLAKKLALSKSSLRMLSKQS 71 (98) Q Consensus 4 i~v~V~P~a~~~~I~g~~~~~d~~~~~~lkv~v~ApP-v~----GkAN~ali~~Lak~l~v~ks~I~I~~G~~ 71 (98) |.|.+.|+..-. ..| .......+.|++-- .+ .+..+++++||.+.|+||+.+|-|..-.. T Consensus 38 vmv~v~~~~~m~-fgg-------s~~P~a~~~v~siG~l~~~~n~~~s~~i~~~l~~~LgI~~~Riyi~f~d~ 102 (115) T d1uiza_ 38 IAIHIVPDQIMS-FGD-------STDPCAVCSLCSIGKIGGPQNKSYTKLLCDILTKQLNIPANRVYINYYDL 102 (115) T ss_dssp CEEEEECSCEEE-ETT-------BCSSCEEEEEEESSCCSHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEEC T ss_pred EEEEECCCCEEE-ECC-------CCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEC T ss_conf 999983896079-679-------89968999999976888135599999999999987499956499999978 No 5 >d1jrob2 d.133.1.1 (B:124-777) Xanthine dehydrogenase chain B, C-terminal domain {Rhodobacter capsulatus [TaxId: 1061]} Probab=62.11 E-value=5.2 Score=18.52 Aligned_cols=46 Identities=13% Similarity=0.163 Sum_probs=40.9 Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHEEEEECCCCCE Q ss_conf 7679999963876797889999999998299844479983557780 Q gi|254780231|r 29 TIHMKIKVTATPQKGKANKAMLAMLAKKLALSKSSLRMLSKQSSPL 74 (98) Q Consensus 29 ~~~lkv~v~ApPv~GkAN~ali~~Lak~l~v~ks~I~I~~G~~sr~ 74 (98) ++.+.|+..+.....=.+..+....|+.|++|..+|++..|-|+.. T Consensus 353 DG~v~v~~g~~d~GQG~~T~~aQiaAe~LGi~~e~V~v~~~DT~~~ 398 (654) T d1jrob2 353 DGSVALNHGGTEMGQGLHAKMVQVAAAVLGIDPVQVRITATDTSKV 398 (654) T ss_dssp TSCEEEEESCCCSSSCHHHHHHHHHHHHHTSCGGGEEECCEETTTS T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCC T ss_conf 9988998387678986788899999998589620369994268888 No 6 >d1dpta_ d.80.1.3 (A:) D-dopachrome tautomerase {Human (Homo sapiens) [TaxId: 9606]} Probab=61.42 E-value=4.7 Score=18.79 Aligned_cols=58 Identities=16% Similarity=0.255 Sum_probs=37.5 Q ss_pred EEEEEECCCCCCEEEEECCCCCCCCCCEEEEEEECC-----CCCC-HHHHHHHHHHHHHHCCCHHHEEEEEC Q ss_conf 999994186653023101456667776799999638-----7679-78899999999982998444799835 Q gi|254780231|r 4 VIVRLIPNAKKSGIASLEIPKDTSDTIHMKIKVTAT-----PQKG-KANKAMLAMLAKKLALSKSSLRMLSK 69 (98) Q Consensus 4 i~v~V~P~a~~~~I~g~~~~~d~~~~~~lkv~v~Ap-----Pv~G-kAN~ali~~Lak~l~v~ks~I~I~~G 69 (98) +.|.+.|+..-. ..| ..+.+.-+.|++. |++. +.-+++++||.+.||||+.+|-|..- T Consensus 37 vmV~v~~~~~m~-fgG-------s~eP~a~~~l~sig~~~~~e~n~~~s~~i~~~l~~~LgI~~~RiyI~f~ 100 (117) T d1dpta_ 37 VNVTVRPGLAMA-LSG-------STEPCAQLSISSIGVVGTAEDNRSHSAHFFEFLTKELALGQDRILIRFF 100 (117) T ss_dssp CEEEEECSCCCC-BTT-------BCSSCEEEEEEEESSSCSHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEE T ss_pred EEEEEECCCCEE-ECC-------CCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE T ss_conf 999997597569-779-------8996799999982587867788999999999999872979675999999 No 7 >d1b24a1 d.95.2.1 (A:7-99) DNA endonuclease I-dmoI {Archaeon Desulfurococcus mobilis [TaxId: 2274]} Probab=59.43 E-value=4.7 Score=18.80 Aligned_cols=58 Identities=12% Similarity=0.272 Sum_probs=36.5 Q ss_pred CCCEEEEEEECCCCCC-HHHH-HHHHHHHHHHCCCHHHEEEEECCCCCEEEEEECCCHHHHHHHH Q ss_conf 7767999996387679-7889-9999999982998444799835577806999829989999999 Q gi|254780231|r 28 DTIHMKIKVTATPQKG-KANK-AMLAMLAKKLALSKSSLRMLSKQSSPLKIIYIDKDCKEITELL 90 (98) Q Consensus 28 ~~~~lkv~v~ApPv~G-kAN~-ali~~Lak~l~v~ks~I~I~~G~~sr~K~i~I~~~~~~i~~~L 90 (98) .+..++|-++...+.- +-|. -+.++|-+.|++ +|.|.+++|.+--. +++ ++..+-..+ T Consensus 26 ~RtEYRVViTQK~e~~i~~~~a~m~~~Ll~EL~l-kSkvQvi~G~tR~E--vRV--SSK~L~~~F 85 (93) T d1b24a1 26 NRSEYRVVITQKSENLIKQHIAPLMQFLIDELNV-KSKIQIVKGDTRYE--LRV--SSKKLYYYF 85 (93) T ss_dssp TCEEEEEEEEESCHHHHHHTHHHHHHHHHHHTTC-CCCCEEEECSSCEE--EEE--ECHHHHHHH T ss_pred CCEEEEEEEEECCHHHHHHHHHHHHHHHHHHCCC-CCEEEEEECCCEEE--EEE--EHHHHHHHH T ss_conf 9748999998431879999899999999998097-75489971770699--996--078899999 No 8 >d1v97a5 d.133.1.1 (A:695-1332) Xanthine oxidase, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Probab=48.93 E-value=8.6 Score=17.21 Aligned_cols=46 Identities=11% Similarity=0.120 Sum_probs=39.4 Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHEEEEECCCCCE Q ss_conf 7679999963876797889999999998299844479983557780 Q gi|254780231|r 29 TIHMKIKVTATPQKGKANKAMLAMLAKKLALSKSSLRMLSKQSSPL 74 (98) Q Consensus 29 ~~~lkv~v~ApPv~GkAN~ali~~Lak~l~v~ks~I~I~~G~~sr~ 74 (98) ++.+.|+..+.....=.+..+....|+.|++|..+|+++.|-|+.. T Consensus 332 dG~v~v~~g~~d~GqG~~T~~aqi~Ae~LGi~~~~V~v~~~dT~~~ 377 (638) T d1v97a5 332 DGSVLVSHGGTEMGQGLHTKMVQVASKALKIPISKIYISETSTNTV 377 (638) T ss_dssp TSCEEEEESCCCSSSCHHHHHHHHHHHHHTSCGGGEECCCEETTTS T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCHHEEEEEECCCCCC T ss_conf 9974884476554630256798876765255401266420257778 No 9 >d2gdga1 d.80.1.3 (A:1-114) Microphage migration inhibition factor (MIF) {Mouse (Mus musculus) [TaxId: 10090]} Probab=48.17 E-value=8.9 Score=17.14 Aligned_cols=61 Identities=11% Similarity=0.211 Sum_probs=38.8 Q ss_pred EEEEEECCCCCCEEEEECCCCCCCCCCEEEEEEECCC-CCCH----HHHHHHHHHHHHHCCCHHHEEEEECCCC Q ss_conf 9999941866530231014566677767999996387-6797----8899999999982998444799835577 Q gi|254780231|r 4 VIVRLIPNAKKSGIASLEIPKDTSDTIHMKIKVTATP-QKGK----ANKAMLAMLAKKLALSKSSLRMLSKQSS 72 (98) Q Consensus 4 i~v~V~P~a~~~~I~g~~~~~d~~~~~~lkv~v~ApP-v~Gk----AN~ali~~Lak~l~v~ks~I~I~~G~~s 72 (98) +.|.+.|+..-. ..| ..+.+.-+.|++-- .+.. -.+++++||++.||||..+|-|..-..+ T Consensus 37 vmV~v~~~~~m~-fgG-------s~~P~a~~~l~siG~~~~~~n~~~s~~i~~~l~~~LgI~~~RiyI~f~d~~ 102 (114) T d2gdga1 37 IAVHVVPDQLMT-FSG-------TNDPCALCSLHSIGKIGGAQNRNYSKLLCGLLSDRLHISPDRVYINYYDMN 102 (114) T ss_dssp CEEEEECSCEEE-ETT-------BCSSCEEEEEEESSCCSHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEECC T ss_pred EEEEEECCCCEE-ECC-------CCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECC T ss_conf 899996798727-768-------899779999998068997888999999999999983979565999999788 No 10 >d3dhxa1 d.58.18.13 (A:2-100) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Probab=44.92 E-value=9.2 Score=17.04 Aligned_cols=52 Identities=8% Similarity=0.106 Sum_probs=39.7 Q ss_pred CCCHHHHHHHHHHHHHHCCCHHHEEEEECCCCCEE-------EEEECCCHHHHHHHHHHHHH Q ss_conf 67978899999999982998444799835577806-------99982998999999975230 Q gi|254780231|r 41 QKGKANKAMLAMLAKKLALSKSSLRMLSKQSSPLK-------IIYIDKDCKEITELLQNNDS 95 (98) Q Consensus 41 v~GkAN~ali~~Lak~l~v~ks~I~I~~G~~sr~K-------~i~I~~~~~~i~~~L~~~~s 95 (98) ....|++-++.-|++.|++ ++.|+.|.-.+.. ++.+.|+.+++.+.++...+ T Consensus 28 ~g~~a~~Piis~l~~~~~v---~vnIL~g~i~~i~~~~~G~Lil~l~g~~~~i~~al~~L~~ 86 (99) T d3dhxa1 28 TGQSVDAPLLSETARRFNV---NNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQE 86 (99) T ss_dssp EEECTTCCHHHHHHHHSCC---EEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHH T ss_pred ECCCCCCCHHHHHHHHHCC---CEEEEEEEEEEECCEEEEEEEEEEECCHHHHHHHHHHHHH T ss_conf 0897686199999998599---6699998627808842799999950898999999999998 No 11 >d2qswa1 d.58.18.13 (A:256-345) Methionine import ATP-binding protein MetN2 {Enterococcus faecalis [TaxId: 1351]} Probab=42.60 E-value=9.8 Score=16.88 Aligned_cols=59 Identities=5% Similarity=0.120 Sum_probs=41.9 Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHEEEEECCCCC-------EEEEEECCCHHHHHHHHHHHHH Q ss_conf 67999996387679788999999999829984447998355778-------0699982998999999975230 Q gi|254780231|r 30 IHMKIKVTATPQKGKANKAMLAMLAKKLALSKSSLRMLSKQSSP-------LKIIYIDKDCKEITELLQNNDS 95 (98) Q Consensus 30 ~~lkv~v~ApPv~GkAN~ali~~Lak~l~v~ks~I~I~~G~~sr-------~K~i~I~~~~~~i~~~L~~~~s 95 (98) ..+++.. ....|++.++.-|++.|++ ++.|++|.-.. .=++++.|+++++.+.++...+ T Consensus 14 ~lvrl~f----~g~~a~~Pvis~l~r~~~i---~vnIL~g~i~~i~~~~~G~L~l~l~G~~~~i~~al~~L~~ 79 (90) T d2qswa1 14 KIVRLLF----HGEQAKLPIISHIVQEYQV---EVSIIQGNIQQTKQGAVGSLYIQLLGEEQNILAAIEGLRK 79 (90) T ss_dssp EEEEEEE----ESCSCSSCHHHHHHHHHTC---EEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHH T ss_pred EEEEEEE----CCCCCCCCHHHHHHHHHCC---CEEEEEEEEEEECCCCEEEEEEEEECCHHHHHHHHHHHHH T ss_conf 8999998----4986586499999998599---2899998708708963799999997899999999999998 No 12 >d1szwa_ d.265.1.4 (A:) tRNA pseudouridine synthase TruD {Escherichia coli [TaxId: 562]} Probab=41.97 E-value=11 Score=16.56 Aligned_cols=43 Identities=16% Similarity=0.259 Sum_probs=34.6 Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHEEEEECCCCCE Q ss_conf 77679999963876797889999999998299844479983557780 Q gi|254780231|r 28 DTIHMKIKVTATPQKGKANKAMLAMLAKKLALSKSSLRMLSKQSSPL 74 (98) Q Consensus 28 ~~~~lkv~v~ApPv~GkAN~ali~~Lak~l~v~ks~I~I~~G~~sr~ 74 (98) .|+++-+.|.- .|.-+.+++..||+.|+++.++|.. .|.+.|. T Consensus 40 ~G~~~~~~l~K---~~~dT~~ai~~Lar~l~v~~~~i~y-AG~KDk~ 82 (341) T d1szwa_ 40 EGEHILVRILK---NGCNTRFVADALAKFLKIHAREVSF-AGQKDKH 82 (341) T ss_dssp CSSEEEEEEEE---SSSCHHHHHHHHHHHTTCCGGGEEE-SCCCCTT T ss_pred CCCEEEEEEEE---CCCCHHHHHHHHHHHHCCCHHHEEE-CCCCCCC T ss_conf 76789999998---8899999999999983998444315-5356576 No 13 >d1rm6a2 d.133.1.1 (A:134-769) 4-hydroxybenzoyl-CoA reductase alpha subunit HrcA, C-terminal domain {Thauera aromatica [TaxId: 59405]} Probab=39.81 E-value=12 Score=16.36 Aligned_cols=46 Identities=17% Similarity=0.128 Sum_probs=39.9 Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHEEEEECCCCCE Q ss_conf 7679999963876797889999999998299844479983557780 Q gi|254780231|r 29 TIHMKIKVTATPQKGKANKAMLAMLAKKLALSKSSLRMLSKQSSPL 74 (98) Q Consensus 29 ~~~lkv~v~ApPv~GkAN~ali~~Lak~l~v~ks~I~I~~G~~sr~ 74 (98) ++.+.|.........=.+..+....|+.|++|..+|++..|-|+.. T Consensus 336 dG~v~v~~g~~d~GqG~~T~~~QiaAe~LGi~~e~V~v~~~DT~~~ 381 (636) T d1rm6a2 336 DGGITLLTGAADIGQGSNTMASQVAAEVLGVRLSRIRVISADSALT 381 (636) T ss_dssp TCCEEEEECCCCSSSCHHHHHHHHHHHHHTCCGGGEEEEESBTTTS T ss_pred CCCEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCC T ss_conf 9976885154465444431055646777396643232102466645 No 14 >d1hfoa_ d.80.1.3 (A:) Microphage migration inhibition factor (MIF) {Trichinella spiralis [TaxId: 6334]} Probab=39.55 E-value=12 Score=16.33 Aligned_cols=61 Identities=13% Similarity=0.098 Sum_probs=38.5 Q ss_pred EEEEEECCCCCCEEEEECCCCCCCCCCEEEEEEECCC-CCC----HHHHHHHHHHHHHHCCCHHHEEEEECCCC Q ss_conf 9999941866530231014566677767999996387-679----78899999999982998444799835577 Q gi|254780231|r 4 VIVRLIPNAKKSGIASLEIPKDTSDTIHMKIKVTATP-QKG----KANKAMLAMLAKKLALSKSSLRMLSKQSS 72 (98) Q Consensus 4 i~v~V~P~a~~~~I~g~~~~~d~~~~~~lkv~v~ApP-v~G----kAN~ali~~Lak~l~v~ks~I~I~~G~~s 72 (98) |.|.+.|+..-. .. |....+.-+.|++-. .+. +..+++++||.+.|+||+.+|-|..-..+ T Consensus 37 vmV~v~~~~~m~-fg-------Gs~eP~a~~~l~sig~l~~~~n~~~s~~i~~~l~~~LgI~~~RiyI~f~d~~ 102 (113) T d1hfoa_ 37 VAVHINTDQQLS-FG-------GSTNPAAFGTLMSIGGIEPSRNRDHSAKLFDHLNTKLGIPKNRMYIHFVNLN 102 (113) T ss_dssp CEEEEECSCEEE-ET-------TBCSSCEEEEEEESSSCSHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEECC T ss_pred EEEEECCCCCEE-EC-------CCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECC T ss_conf 899981897279-76-------9899679999999358996883899999999999971979364999999788 No 15 >d1n62b2 d.133.1.1 (B:147-809) Carbon monoxide (CO) dehydrogenase molybdoprotein {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]} Probab=34.17 E-value=15 Score=15.82 Aligned_cols=46 Identities=9% Similarity=0.135 Sum_probs=38.6 Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHEEEEECCCCCE Q ss_conf 7679999963876797889999999998299844479983557780 Q gi|254780231|r 29 TIHMKIKVTATPQKGKANKAMLAMLAKKLALSKSSLRMLSKQSSPL 74 (98) Q Consensus 29 ~~~lkv~v~ApPv~GkAN~ali~~Lak~l~v~ks~I~I~~G~~sr~ 74 (98) ++.+.|.+.+....-=.+..+....|+.||+|-.+|.+..|-|... T Consensus 370 DG~v~v~~g~~d~GqG~~T~~~QiaAe~LGip~d~V~v~~~DT~~~ 415 (663) T d1n62b2 370 TGSVIARMGTKSQGQGHETTYAQIIATELGIPADDIMIEEGNTDTA 415 (663) T ss_dssp TSCEEEEESCCCSSSCHHHHHHHHHHHHHTCCGGGEEEECCBTTTS T ss_pred CCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCHHHCCCCCCCCCCC T ss_conf 9978775234456787413568999998399665433324778878 No 16 >d1ffvb2 d.133.1.1 (B:147-803) Carbon monoxide (CO) dehydrogenase molybdoprotein {Hydrogenophaga pseudoflava [TaxId: 47421]} Probab=27.57 E-value=19 Score=15.14 Aligned_cols=46 Identities=11% Similarity=0.130 Sum_probs=39.0 Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHEEEEECCCCCE Q ss_conf 7679999963876797889999999998299844479983557780 Q gi|254780231|r 29 TIHMKIKVTATPQKGKANKAMLAMLAKKLALSKSSLRMLSKQSSPL 74 (98) Q Consensus 29 ~~~lkv~v~ApPv~GkAN~ali~~Lak~l~v~ks~I~I~~G~~sr~ 74 (98) ++.+.|+..+.....=.+..+....|+.|++|..+|.+..|-|+.. T Consensus 364 dG~v~v~~g~~e~GqG~~T~~aQiaAe~LGip~~~V~v~~~DT~~~ 409 (657) T d1ffvb2 364 TGSAIARMGTITQGQGHQTTYAQIIATELGIPSEVIQVEEGDTSTA 409 (657) T ss_dssp TSCEEEEESCCCSSSCHHHHHHHHHHHHHTCCGGGEEEECCBTTTS T ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCHHCCEECCCCCCCC T ss_conf 3641022001234431135688777887188610031026887869 No 17 >d1mwwa_ d.80.1.4 (A:) Hypothetical protein HI1388.1 {Haemophilus influenzae [TaxId: 727]} Probab=25.07 E-value=21 Score=14.87 Aligned_cols=45 Identities=13% Similarity=0.180 Sum_probs=29.8 Q ss_pred CCCCEEEEEEECCC-CCCHHH----HHHHHHHHHHHCCCHHHEEEEECCC Q ss_conf 77767999996387-679788----9999999998299844479983557 Q gi|254780231|r 27 SDTIHMKIKVTATP-QKGKAN----KAMLAMLAKKLALSKSSLRMLSKQS 71 (98) Q Consensus 27 ~~~~~lkv~v~ApP-v~GkAN----~ali~~Lak~l~v~ks~I~I~~G~~ 71 (98) +....+.|.|..-+ ..-..+ +++.+.|++.+++|+.+|.|.--+. T Consensus 55 rs~~~~~I~i~~~~grs~eqK~~l~~~lt~~l~~~lgi~~~~v~I~i~e~ 104 (120) T d1mwwa_ 55 RSDDYTVIEINLMAGRMEGTKKRLIKMLFSELEYKLGIRAHDVEITIKEQ 104 (120) T ss_dssp SCTTCEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEEE T ss_pred CCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEC T ss_conf 88987999999757999999999999999999998595907499999987 No 18 >d1y7ea1 b.49.3.1 (A:101-233) Probable aminopeptidase ApeA {Borrelia burgdorferi [TaxId: 139]} Probab=24.68 E-value=22 Score=14.82 Aligned_cols=33 Identities=24% Similarity=0.469 Sum_probs=22.3 Q ss_pred EEEEEECCC----CCCHHHHHHHHHHHHHHCCCHHHE Q ss_conf 999996387----679788999999999829984447 Q gi|254780231|r 32 MKIKVTATP----QKGKANKAMLAMLAKKLALSKSSL 64 (98) Q Consensus 32 lkv~v~ApP----v~GkAN~ali~~Lak~l~v~ks~I 64 (98) |..-+..-| .+++....++++||+.++|...+| T Consensus 90 L~pi~~~~p~~~~~~~~~k~~ll~lla~e~gi~~~Di 126 (133) T d1y7ea1 90 LKILIGSLPIETKEKNKVKLATLQLIKEKYKIEEEDF 126 (133) T ss_dssp CCEEEECCCCSCSSSCHHHHHHHHHHHHHHCCCTTTT T ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHH T ss_conf 3787655877665420579999999999969899994 No 19 >d1otfa_ d.80.1.1 (A:) 4-oxalocrotonate tautomerase {Pseudomonas sp., DmpI [TaxId: 306]} Probab=23.84 E-value=23 Score=14.73 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=19.3 Q ss_pred HHHHHHHHHHHHCCCHHHEEEEE Q ss_conf 89999999998299844479983 Q gi|254780231|r 46 NKAMLAMLAKKLALSKSSLRMLS 68 (98) Q Consensus 46 N~ali~~Lak~l~v~ks~I~I~~ 68 (98) =+++.+.+++.+++|+.+|.++- T Consensus 20 ~~~it~~~~~~~g~~~~~v~V~i 42 (59) T d1otfa_ 20 IRQVSEAMANSLDAPLERVRVLI 42 (59) T ss_dssp HHHHHHHHHHHHTCCGGGCEEEE T ss_pred HHHHHHHHHHHHCCCCCCEEEEE T ss_conf 99999999998495904299999 No 20 >d1xdpa2 d.322.1.2 (A:107-314) Polyphosphate kinase, PPK {Escherichia coli [TaxId: 562]} Probab=23.33 E-value=21 Score=14.86 Aligned_cols=30 Identities=17% Similarity=0.239 Sum_probs=25.1 Q ss_pred CCCHHHHHHHHHHHHHHCCCHHHEEEEECC Q ss_conf 679788999999999829984447998355 Q gi|254780231|r 41 QKGKANKAMLAMLAKKLALSKSSLRMLSKQ 70 (98) Q Consensus 41 v~GkAN~ali~~Lak~l~v~ks~I~I~~G~ 70 (98) +++..+.++.++|.+.|++.+.++-+.-|. T Consensus 158 ~~~~mp~~~~~~L~~~l~l~~~d~~~~~G~ 187 (208) T d1xdpa2 158 YQRDMPNALVEVLREKLTISRYDSIVPGGR 187 (208) T ss_dssp ECTTCCHHHHHHHHHHTTCCSSSEEEECCS T ss_pred ECCCCCHHHHHHHHHHCCCCCCCEEEECCC T ss_conf 347899999999999829694663741896 No 21 >d2qrra1 d.58.18.13 (A:2-98) Methionine import ATP-binding protein MetN {Vibrio parahaemolyticus [TaxId: 670]} Probab=22.77 E-value=24 Score=14.60 Aligned_cols=60 Identities=5% Similarity=0.109 Sum_probs=42.9 Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHEEEEECCCCCE-------EEEEECCCHHHHHHHHHHHHH Q ss_conf 79999963876797889999999998299844479983557780-------699982998999999975230 Q gi|254780231|r 31 HMKIKVTATPQKGKANKAMLAMLAKKLALSKSSLRMLSKQSSPL-------KIIYIDKDCKEITELLQNNDS 95 (98) Q Consensus 31 ~lkv~v~ApPv~GkAN~ali~~Lak~l~v~ks~I~I~~G~~sr~-------K~i~I~~~~~~i~~~L~~~~s 95 (98) ..-++++= ....|++.++.-|++.|++ ++.|+.|.-... =.+.+.|+.+++.+.++...+ T Consensus 19 ~~llrl~f--~g~~a~~Pvis~l~~~~~i---~vnIL~g~i~~i~~~~~G~Lil~l~G~~~~~~~Al~~L~~ 85 (97) T d2qrra1 19 YPLVRMEF--TGATVDAPLMSQISRKYNI---DVSILSSDLDYAGGVKFGMMVAELFGNEQDDSAAIEYLRE 85 (97) T ss_dssp EEEEEEEE--CTTSCSSCHHHHHHHHSCC---EEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHH T ss_pred CEEEEEEE--ECCCCCCHHHHHHHHHHCC---CEEEEEEEEEEECCEEEEEEEEEEECCHHHHHHHHHHHHH T ss_conf 25999998--1887686399999998799---7299998528858854899999997899999999999998 Done!