RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780231|ref|YP_003064644.1| hypothetical protein CLIBASIA_00580 [Candidatus Liberibacter asiaticus str. psy62] (98 letters) >gnl|CDD|167208 PRK01310, PRK01310, hypothetical protein; Validated. Length = 104 Score = 68.1 bits (167), Expect = 5e-13 Identities = 33/88 (37%), Positives = 54/88 (61%), Gaps = 2/88 (2%) Query: 4 VIVRLIPNAKKSGIASLEIPKDTSDTIHMKIKVTATPQKGKANKAMLAMLAKKLALSKSS 63 + VRL P + I +E D +K++V A P+ G+AN+A++ +LAK L + KSS Sbjct: 14 LAVRLTPRGGRDAIDGIETLADGRA--VLKVRVRAVPEGGEANRALIELLAKALGVPKSS 71 Query: 64 LRMLSKQSSPLKIIYIDKDCKEITELLQ 91 +R+LS +S LK + ID D +++ E L+ Sbjct: 72 VRLLSGATSRLKQLRIDGDPEDLGEALR 99 >gnl|CDD|100624 PRK00647, PRK00647, hypothetical protein; Validated. Length = 96 Score = 47.9 bits (114), Expect = 6e-07 Identities = 27/81 (33%), Positives = 49/81 (60%), Gaps = 7/81 (8%) Query: 6 VRLIPNAKKSGIASLEIPKDTSDTIHMKIKVTATPQKGKANKAMLAMLAKKLALSKSSLR 65 V++ P A+++ I E I +K++VT P+KGKAN A++A+LAK L+L K + Sbjct: 10 VKVTPKARENKIVGFE------GGI-LKVRVTEVPEKGKANDAVIALLAKFLSLPKRDVT 62 Query: 66 MLSKQSSPLKIIYIDKDCKEI 86 +++ ++S K + + + K I Sbjct: 63 LIAGETSRKKKVLLPRSIKAI 83 >gnl|CDD|134567 PRK01530, PRK01530, hypothetical protein; Reviewed. Length = 105 Score = 42.1 bits (99), Expect = 4e-05 Identities = 25/83 (30%), Positives = 49/83 (59%), Gaps = 3/83 (3%) Query: 10 PNAKKSGIASLEIPKDTSDTIHMKIKVTATPQKGKANKAMLAMLAKKLALSKSSLRMLSK 69 PNAK++ I++ I + ++K+ + A P++GKAN+ ++ LAK+ LS+S++ ++ Sbjct: 22 PNAKQNLISNFVIINNIP---YLKLSIKAIPEQGKANEEIINYLAKEWKLSRSNIEIIKG 78 Query: 70 QSSPLKIIYIDKDCKEITELLQN 92 + LK I I ++ L+ N Sbjct: 79 HTHSLKTILIKNINEDYLNLIIN 101 >gnl|CDD|179931 PRK05090, PRK05090, hypothetical protein; Validated. Length = 95 Score = 35.3 bits (82), Expect = 0.004 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 9/77 (11%) Query: 23 PKDTSDTI---H---MKIKVTATPQKGKANKAMLAMLAKKLALSKSSLRMLSKQSSPLKI 76 PK + D I H +K+ +TA P G+AN +L LAK+ ++KS + + + K Sbjct: 19 PKASRDQIVGLHGDELKVAITAPPVDGQANAHLLKFLAKQFRVAKSQVVIEKGELGRHKQ 78 Query: 77 IYIDKDCK---EITELL 90 + I + EI LL Sbjct: 79 VRIINPQQIPPEIAALL 95 >gnl|CDD|129353 TIGR00251, TIGR00251, conserved hypothetical protein TIGR00251. Length = 87 Score = 32.9 bits (75), Expect = 0.019 Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 9/77 (11%) Query: 10 PNAKKSGIASLEIPKDTSDTIHMKIKVTATPQKGKANKAMLAMLAKKLALSKSSLRMLSK 69 P A K I + +++K+ A P +GKAN+ ++ + + ++S Sbjct: 16 PKASKDSIVGYNEWRK-----RVEVKIKAPPVEGKANRELIKFFGEIF---GVDVEIVSG 67 Query: 70 QSSPLKIIYIDKDCKEI 86 + S K I I + ++I Sbjct: 68 ELSRQKTIKI-INPRDI 83 >gnl|CDD|178728 PLN03186, PLN03186, DNA repair protein RAD51 homolog; Provisional. Length = 342 Score = 30.5 bits (69), Expect = 0.097 Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 15/94 (15%) Query: 9 IPNAKKSGIASLEIPKDTSDTIHMKIKVTATPQK----------GKANKAMLAMLAKKLA 58 I + SGIA+L+I K IH + P+K K K + A KL Sbjct: 28 IEQLQASGIAALDIKKLKDAGIHTVESLAYAPKKDLLQIKGISEAKVEK--ILEAASKLV 85 Query: 59 -LSKSSLRMLSKQSSPLKIIYIDKDCKEITELLQ 91 L ++ L Q +II I +E+ ++L+ Sbjct: 86 PLGFTTASQLHAQR--QEIIQITTGSRELDKILE 117 >gnl|CDD|167678 PRK04021, PRK04021, hypothetical protein; Reviewed. Length = 92 Score = 29.8 bits (67), Expect = 0.18 Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 7/56 (12%) Query: 4 VIVRLI--PNAKKSGIASLEIPKDTSDTIHMKIKVTATPQKGKANKAMLAMLAKKL 57 VI+++ P AK++ I ++ + +K+K+ A P KGKANK ++ +K L Sbjct: 9 VILQVYVQPKAKENEIEGVDEWRG-----RLKVKIKAPPVKGKANKELVKFFSKLL 59 >gnl|CDD|131576 TIGR02524, dot_icm_DotB, Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems. Length = 358 Score = 25.0 bits (54), Expect = 4.9 Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 2/76 (2%) Query: 4 VIVRLIPNAKKSGIASLEIPKDTSDTIHMKIKVT-ATPQKGKANKAMLAMLAKKLALSKS 62 + +R IP A+ ++ L++P D I + + T G +LA + ++LA + Sbjct: 105 ITIRAIP-AEPPKLSKLDLPAAIIDAIAPQEGIVFITGATGSGKSTLLAAIIRELAEAPD 163 Query: 63 SLRMLSKQSSPLKIIY 78 S R + +P++ +Y Sbjct: 164 SHRKILTYEAPIEFVY 179 >gnl|CDD|179660 PRK03839, PRK03839, putative kinase; Provisional. Length = 180 Score = 24.7 bits (54), Expect = 5.8 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 2/39 (5%) Query: 32 MKIKVTATPQKGKANKAMLAMLAKKLALSKSSLRMLSKQ 70 M I +T TP GK + L LA+KL L + + Sbjct: 1 MIIAITGTPGVGKTTVSKL--LAEKLGYEYVDLTEFALK 37 >gnl|CDD|148143 pfam06353, DUF1062, Protein of unknown function (DUF1062). This family consists of several hypothetical bacterial proteins of unknown function. Length = 142 Score = 24.2 bits (53), Expect = 8.0 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 3/62 (4%) Query: 11 NAKKSGIASLEIPK--DTSDTIHMKIKVTATPQKGKANKAMLAMLAKKLALSKSSLRMLS 68 A+ EI K T H I++ + + + +LA++L LS+S L+ L Sbjct: 66 RAELDEFPEFEIAKRLLTGIASHAAIEIQLRLEF-PFSLRLDRLLAEELGLSRSRLQRLI 124 Query: 69 KQ 70 Q Sbjct: 125 DQ 126 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.314 0.127 0.335 Gapped Lambda K H 0.267 0.0557 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 1,364,821 Number of extensions: 66919 Number of successful extensions: 159 Number of sequences better than 10.0: 1 Number of HSP's gapped: 159 Number of HSP's successfully gapped: 20 Length of query: 98 Length of database: 5,994,473 Length adjustment: 65 Effective length of query: 33 Effective length of database: 4,589,953 Effective search space: 151468449 Effective search space used: 151468449 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 50 (23.4 bits)