RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780231|ref|YP_003064644.1| hypothetical protein
CLIBASIA_00580 [Candidatus Liberibacter asiaticus str. psy62]
(98 letters)
>gnl|CDD|167208 PRK01310, PRK01310, hypothetical protein; Validated.
Length = 104
Score = 68.1 bits (167), Expect = 5e-13
Identities = 33/88 (37%), Positives = 54/88 (61%), Gaps = 2/88 (2%)
Query: 4 VIVRLIPNAKKSGIASLEIPKDTSDTIHMKIKVTATPQKGKANKAMLAMLAKKLALSKSS 63
+ VRL P + I +E D +K++V A P+ G+AN+A++ +LAK L + KSS
Sbjct: 14 LAVRLTPRGGRDAIDGIETLADGRA--VLKVRVRAVPEGGEANRALIELLAKALGVPKSS 71
Query: 64 LRMLSKQSSPLKIIYIDKDCKEITELLQ 91
+R+LS +S LK + ID D +++ E L+
Sbjct: 72 VRLLSGATSRLKQLRIDGDPEDLGEALR 99
>gnl|CDD|100624 PRK00647, PRK00647, hypothetical protein; Validated.
Length = 96
Score = 47.9 bits (114), Expect = 6e-07
Identities = 27/81 (33%), Positives = 49/81 (60%), Gaps = 7/81 (8%)
Query: 6 VRLIPNAKKSGIASLEIPKDTSDTIHMKIKVTATPQKGKANKAMLAMLAKKLALSKSSLR 65
V++ P A+++ I E I +K++VT P+KGKAN A++A+LAK L+L K +
Sbjct: 10 VKVTPKARENKIVGFE------GGI-LKVRVTEVPEKGKANDAVIALLAKFLSLPKRDVT 62
Query: 66 MLSKQSSPLKIIYIDKDCKEI 86
+++ ++S K + + + K I
Sbjct: 63 LIAGETSRKKKVLLPRSIKAI 83
>gnl|CDD|134567 PRK01530, PRK01530, hypothetical protein; Reviewed.
Length = 105
Score = 42.1 bits (99), Expect = 4e-05
Identities = 25/83 (30%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 10 PNAKKSGIASLEIPKDTSDTIHMKIKVTATPQKGKANKAMLAMLAKKLALSKSSLRMLSK 69
PNAK++ I++ I + ++K+ + A P++GKAN+ ++ LAK+ LS+S++ ++
Sbjct: 22 PNAKQNLISNFVIINNIP---YLKLSIKAIPEQGKANEEIINYLAKEWKLSRSNIEIIKG 78
Query: 70 QSSPLKIIYIDKDCKEITELLQN 92
+ LK I I ++ L+ N
Sbjct: 79 HTHSLKTILIKNINEDYLNLIIN 101
>gnl|CDD|179931 PRK05090, PRK05090, hypothetical protein; Validated.
Length = 95
Score = 35.3 bits (82), Expect = 0.004
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 9/77 (11%)
Query: 23 PKDTSDTI---H---MKIKVTATPQKGKANKAMLAMLAKKLALSKSSLRMLSKQSSPLKI 76
PK + D I H +K+ +TA P G+AN +L LAK+ ++KS + + + K
Sbjct: 19 PKASRDQIVGLHGDELKVAITAPPVDGQANAHLLKFLAKQFRVAKSQVVIEKGELGRHKQ 78
Query: 77 IYIDKDCK---EITELL 90
+ I + EI LL
Sbjct: 79 VRIINPQQIPPEIAALL 95
>gnl|CDD|129353 TIGR00251, TIGR00251, conserved hypothetical protein TIGR00251.
Length = 87
Score = 32.9 bits (75), Expect = 0.019
Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 9/77 (11%)
Query: 10 PNAKKSGIASLEIPKDTSDTIHMKIKVTATPQKGKANKAMLAMLAKKLALSKSSLRMLSK 69
P A K I + +++K+ A P +GKAN+ ++ + + ++S
Sbjct: 16 PKASKDSIVGYNEWRK-----RVEVKIKAPPVEGKANRELIKFFGEIF---GVDVEIVSG 67
Query: 70 QSSPLKIIYIDKDCKEI 86
+ S K I I + ++I
Sbjct: 68 ELSRQKTIKI-INPRDI 83
>gnl|CDD|178728 PLN03186, PLN03186, DNA repair protein RAD51 homolog; Provisional.
Length = 342
Score = 30.5 bits (69), Expect = 0.097
Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 15/94 (15%)
Query: 9 IPNAKKSGIASLEIPKDTSDTIHMKIKVTATPQK----------GKANKAMLAMLAKKLA 58
I + SGIA+L+I K IH + P+K K K + A KL
Sbjct: 28 IEQLQASGIAALDIKKLKDAGIHTVESLAYAPKKDLLQIKGISEAKVEK--ILEAASKLV 85
Query: 59 -LSKSSLRMLSKQSSPLKIIYIDKDCKEITELLQ 91
L ++ L Q +II I +E+ ++L+
Sbjct: 86 PLGFTTASQLHAQR--QEIIQITTGSRELDKILE 117
>gnl|CDD|167678 PRK04021, PRK04021, hypothetical protein; Reviewed.
Length = 92
Score = 29.8 bits (67), Expect = 0.18
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 7/56 (12%)
Query: 4 VIVRLI--PNAKKSGIASLEIPKDTSDTIHMKIKVTATPQKGKANKAMLAMLAKKL 57
VI+++ P AK++ I ++ + +K+K+ A P KGKANK ++ +K L
Sbjct: 9 VILQVYVQPKAKENEIEGVDEWRG-----RLKVKIKAPPVKGKANKELVKFFSKLL 59
>gnl|CDD|131576 TIGR02524, dot_icm_DotB, Dot/Icm secretion system ATPase DotB.
Members of this protein family are the DotB component of
Dot/Icm secretion systems, as found in obligate
intracellular pathogens Legionella pneumophila and
Coxiella burnetii. While this system resembles type IV
secretion systems and has been called a form of type IV,
the liturature now seems to favor calling this the
Dot/Icm system. This family is most closely related to
TraJ proteins of plasmid transfer, rather than to
proteins of other type IV secretion systems.
Length = 358
Score = 25.0 bits (54), Expect = 4.9
Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 4 VIVRLIPNAKKSGIASLEIPKDTSDTIHMKIKVT-ATPQKGKANKAMLAMLAKKLALSKS 62
+ +R IP A+ ++ L++P D I + + T G +LA + ++LA +
Sbjct: 105 ITIRAIP-AEPPKLSKLDLPAAIIDAIAPQEGIVFITGATGSGKSTLLAAIIRELAEAPD 163
Query: 63 SLRMLSKQSSPLKIIY 78
S R + +P++ +Y
Sbjct: 164 SHRKILTYEAPIEFVY 179
>gnl|CDD|179660 PRK03839, PRK03839, putative kinase; Provisional.
Length = 180
Score = 24.7 bits (54), Expect = 5.8
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 32 MKIKVTATPQKGKANKAMLAMLAKKLALSKSSLRMLSKQ 70
M I +T TP GK + L LA+KL L + +
Sbjct: 1 MIIAITGTPGVGKTTVSKL--LAEKLGYEYVDLTEFALK 37
>gnl|CDD|148143 pfam06353, DUF1062, Protein of unknown function (DUF1062). This
family consists of several hypothetical bacterial
proteins of unknown function.
Length = 142
Score = 24.2 bits (53), Expect = 8.0
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 11 NAKKSGIASLEIPK--DTSDTIHMKIKVTATPQKGKANKAMLAMLAKKLALSKSSLRMLS 68
A+ EI K T H I++ + + + +LA++L LS+S L+ L
Sbjct: 66 RAELDEFPEFEIAKRLLTGIASHAAIEIQLRLEF-PFSLRLDRLLAEELGLSRSRLQRLI 124
Query: 69 KQ 70
Q
Sbjct: 125 DQ 126
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.314 0.127 0.335
Gapped
Lambda K H
0.267 0.0557 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,364,821
Number of extensions: 66919
Number of successful extensions: 159
Number of sequences better than 10.0: 1
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 20
Length of query: 98
Length of database: 5,994,473
Length adjustment: 65
Effective length of query: 33
Effective length of database: 4,589,953
Effective search space: 151468449
Effective search space used: 151468449
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.4 bits)