RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780231|ref|YP_003064644.1| hypothetical protein
CLIBASIA_00580 [Candidatus Liberibacter asiaticus str. psy62]
         (98 letters)



>1n91_A ORF, hypothetical protein; alpha+beta, northeast
          structural genomics consortium, PSI, protein structure
          initiative, NESG; NMR {Escherichia coli O157} (A:)
          Length = 108

 Score = 60.5 bits (147), Expect = 8e-11
 Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 7/86 (8%)

Query: 6  VRLIPNAKKSGIASLEIPKDTSDTIHMKIKVTATPQKGKANKAMLAMLAKKLALSKSSLR 65
          + + P A +  I  L           +K+ +TA P  G+AN  ++  L K+  ++KS + 
Sbjct: 19 LYIQPKASRDSIVGLHGD-------EVKVAITAPPVDGQANSHLVKFLGKQFRVAKSQVV 71

Query: 66 MLSKQSSPLKIIYIDKDCKEITELLQ 91
          +   +    K I I    +   E+  
Sbjct: 72 IEKGELGRHKQIKIINPQQIPPEVAA 97


>1jrm_A MTH0637, conserved hypothetical protein MTH637; alpha-beta
           protein, structural genomics, OCSP, NESG; NMR
           {Methanothermobacterthermautotrophicus} (A:)
          Length = 104

 Score = 55.9 bits (135), Expect = 2e-09
 Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 13/92 (14%)

Query: 6   VRLIPNAKKSGIASLEIPKDTSDTIHMKIKVTATPQKGKANKAMLAMLAKKLALSKSSLR 65
           + + P + K GI S    +       +++K+ + PQKGKAN+ ++   ++        + 
Sbjct: 18  IEVSPASGKFGIPSYNEWRK-----RIEVKIHSPPQKGKANREIIKEFSETF---GRDVE 69

Query: 66  MLSKQSSPLKIIYIDKDCKE-----ITELLQN 92
           ++S Q S  K I I    ++     ++E    
Sbjct: 70  IVSGQKSRQKTIRIQGMGRDLFLKLVSEKFGL 101


>2wzl_A Phosphoprotein; viral protein, rabies, virion, chaperone,
          RNA replication, nucleoprotein; 2.10A {Mokola virus}
          (A:)
          Length = 303

 Score = 24.5 bits (53), Expect = 5.0
 Identities = 9/25 (36%), Positives = 17/25 (68%)

Query: 10 PNAKKSGIASLEIPKDTSDTIHMKI 34
          P+  ++GI  LE+ ++T+D I+  I
Sbjct: 8  PSLIRAGIVELEMAEETTDLINRTI 32


>3ip4_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B;
           multi protein complex, ligase, ATP-binding, nucleotide-
           binding; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_B
           2dqn_B* 2g5h_B 2g5i_B* 2f2a_B (B:1-292)
          Length = 292

 Score = 23.7 bits (51), Expect = 9.8
 Identities = 6/28 (21%), Positives = 13/28 (46%)

Query: 4   VIVRLIPNAKKSGIASLEIPKDTSDTIH 31
           + + +    K+ GI  L + +D   + H
Sbjct: 105 IDIEVDGETKRIGITRLHMEEDAGKSTH 132


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.314    0.127    0.335 

Gapped
Lambda     K      H
   0.267   0.0622    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 592,313
Number of extensions: 19909
Number of successful extensions: 51
Number of sequences better than 10.0: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 7
Length of query: 98
Length of database: 4,956,049
Length adjustment: 57
Effective length of query: 41
Effective length of database: 3,029,164
Effective search space: 124195724
Effective search space used: 124195724
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.3 bits)