RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780231|ref|YP_003064644.1| hypothetical protein
CLIBASIA_00580 [Candidatus Liberibacter asiaticus str. psy62]
         (98 letters)



>1n91_A ORF, hypothetical protein; alpha+beta, northeast structural
           genomics consortium, PSI, protein structure initiative,
           NESG; NMR {Escherichia coli O157} SCOP: d.206.1.1 PDB:
           1yh5_A
          Length = 108

 Score = 65.1 bits (159), Expect = 3e-12
 Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 10/89 (11%)

Query: 6   VRLIPNAKKSGIASLEIPKDTSDTIHMKIKVTATPQKGKANKAMLAMLAKKLALSKSSLR 65
           + + P A +  I  L           +K+ +TA P  G+AN  ++  L K+  ++KS + 
Sbjct: 19  LYIQPKASRDSIVGLH-------GDEVKVAITAPPVDGQANSHLVKFLGKQFRVAKSQVV 71

Query: 66  MLSKQSSPLKIIYIDKDCK---EITELLQ 91
           +   +    K I I    +   E+  L+ 
Sbjct: 72  IEKGELGRHKQIKIINPQQIPPEVAALIN 100


>1jrm_A MTH0637, conserved hypothetical protein MTH637; alpha-beta
          protein, structural genomics, OCSP, NESG; NMR
          {Methanothermobacterthermautotrophicus} SCOP: d.206.1.1
          Length = 104

 Score = 57.8 bits (140), Expect = 6e-10
 Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 9/87 (10%)

Query: 6  VRLIPNAKKSGIASLEIPKDTSDTIHMKIKVTATPQKGKANKAMLAMLAKKLALSKSSLR 65
          + + P + K GI S    +       +++K+ + PQKGKAN+ ++   ++        + 
Sbjct: 18 IEVSPASGKFGIPSYNEWRK-----RIEVKIHSPPQKGKANREIIKEFSETF---GRDVE 69

Query: 66 MLSKQSSPLKIIYIDKDCKE-ITELLQ 91
          ++S Q S  K I I    ++   +L+ 
Sbjct: 70 IVSGQKSRQKTIRIQGMGRDLFLKLVS 96


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 34.6 bits (78), Expect = 0.005
 Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 3/25 (12%)

Query: 55 KKLALSK--SSLRMLSKQSSP-LKI 76
          +K AL K  +SL++ +  S+P L I
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAI 42



 Score = 24.6 bits (52), Expect = 5.6
 Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 5/29 (17%)

Query: 13 KKSGI----ASLEIPKDTSDTIHMKIKVT 37
          +K  +    ASL++  D S    + IK T
Sbjct: 18 EKQALKKLQASLKLYADDSAPA-LAIKAT 45


>3oc2_A Penicillin-binding protein 3; structu genomics, oxford protein
           production facility, OPPF, transpe cell WALL
           biosynthesis; 1.97A {Pseudomonas aeruginosa} PDB:
           3ocl_A* 3ocn_A*
          Length = 564

 Score = 27.9 bits (61), Expect = 0.62
 Identities = 9/47 (19%), Positives = 18/47 (38%)

Query: 36  VTATPQKGKANKAMLAMLAKKLALSKSSLRMLSKQSSPLKIIYIDKD 82
           + A P++    K     LA  L           +Q++  + IY+ + 
Sbjct: 67  LWANPKELMTAKERWPQLAAALGQDTKLFADRIEQNAEREFIYLVRG 113


>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA
          methyltransferase RSRI, DNA binding, DNA modification,
          DNA methylation; HET: MTA; 1.75A {Rhodobacter
          sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A*
          1nw7_A* 1nw8_A
          Length = 319

 Score = 26.0 bits (56), Expect = 2.3
 Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 44 KANKAMLAMLAKKLALSKSSLRMLSKQSSPLKIIYIDKDCKEITELLQNN 93
            ++AM A+       S  S ++ S +    + +Y   DC +    L ++
Sbjct: 9  AGHRAMNALRKSGQKHSSES-QLGSSEIGTTRHVYDVCDCLDTLAKLPDD 57


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl reductase,
            beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
            cerevisiae}
          Length = 2006

 Score = 25.3 bits (55), Expect = 3.2
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 3/33 (9%)

Query: 32   MKIKVTATPQK--GKANKAMLAMLAKKLALSKS 62
            M ++V A P+   G++N  M+A+   ++A S S
Sbjct: 1791 MTMQV-AVPRDELGRSNYGMIAINPGRVAASFS 1822


>1zup_A Hypothetical protein TM1739; structural genomics, PSI, protein
           structure initiative, joint center for structural
           genomics, JCSG; 2.20A {Thermotoga maritima} SCOP:
           c.55.3.11
          Length = 315

 Score = 24.9 bits (54), Expect = 4.6
 Identities = 9/33 (27%), Positives = 12/33 (36%)

Query: 6   VRLIPNAKKSGIASLEIPKDTSDTIHMKIKVTA 38
           V+LI      G+  LE      + I    KV  
Sbjct: 231 VKLIDGEGIRGLVRLETYVKDDNQIPYIRKVFD 263


>2a6y_A EMP47P (FORM1); beta sandwich, carbohydrate binding protein,
          cargo receptor, structural genomics, NPPSFA; 1.42A
          {Saccharomyces cerevisiae} SCOP: b.29.1.13
          Length = 256

 Score = 24.9 bits (54), Expect = 4.8
 Identities = 7/46 (15%), Positives = 13/46 (28%), Gaps = 2/46 (4%)

Query: 6  VRLIPNAKKSGIASLEIPKDTSD--TIHMKIKVTATPQKGKANKAM 49
          + L  N    G   L+   D  D  T+    +      +     + 
Sbjct: 46 IVLTSNQNSKGSLWLKQGFDLKDSFTMEWTFRSVGYSGQTDGGISF 91


>1ee0_A 2-pyrone synthase; polyketide synthase, thiolase fold, transferase;
           HET: CAA; 2.05A {Gerbera hybrid cultivar} SCOP: c.95.1.2
           c.95.1.2 PDB: 1qlv_A
          Length = 402

 Score = 24.3 bits (52), Expect = 6.9
 Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 10/62 (16%)

Query: 4   VIVRLIPNAKKSGIASLEIPKDTSDTIHMKIKVTATPQKGKANKAMLAMLAKKLALSKSS 63
           ++ + I NA +  ++ L I    S    +              +A+L  + +KL L +  
Sbjct: 279 MVAKNIENAAEKALSPLGITDWNSVFWMVH----------PGGRAILDQVERKLNLKEDK 328

Query: 64  LR 65
           LR
Sbjct: 329 LR 330


>2wzl_A Phosphoprotein; viral protein, rabies, virion, chaperone, RNA
          replication, nucleoprotein; 2.10A {Mokola virus}
          Length = 303

 Score = 23.9 bits (52), Expect = 8.1
 Identities = 9/25 (36%), Positives = 17/25 (68%)

Query: 10 PNAKKSGIASLEIPKDTSDTIHMKI 34
          P+  ++GI  LE+ ++T+D I+  I
Sbjct: 8  PSLIRAGIVELEMAEETTDLINRTI 32


>1whr_A Hypothetical KIAA1002 protein; R3H domain, structural genomics,
           riken structural genomics/proteomics initiative, RSGI,
           unknown function; NMR {Homo sapiens} SCOP: d.68.7.1
          Length = 124

 Score = 23.7 bits (51), Expect = 9.4
 Identities = 9/41 (21%), Positives = 15/41 (36%)

Query: 3   NVIVRLIPNAKKSGIASLEIPKDTSDTIHMKIKVTATPQKG 43
            VI+    N +       E  KD  +T   +  + + P  G
Sbjct: 84  AVIINKTSNTRIPEQRFSEHIKDEKNTEFQQRFILSGPSSG 124


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.314    0.127    0.335 

Gapped
Lambda     K      H
   0.267   0.0483    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 703,951
Number of extensions: 25564
Number of successful extensions: 97
Number of sequences better than 10.0: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 17
Length of query: 98
Length of database: 5,693,230
Length adjustment: 64
Effective length of query: 34
Effective length of database: 4,141,614
Effective search space: 140814876
Effective search space used: 140814876
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.6 bits)