RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780232|ref|YP_003064645.1| inorganic pyrophosphatase [Candidatus Liberibacter asiaticus str. psy62] (177 letters) >gnl|CDD|144352 pfam00719, Pyrophosphatase, Inorganic pyrophosphatase. Length = 156 Score = 217 bits (556), Expect = 1e-57 Identities = 84/156 (53%), Positives = 108/156 (69%), Gaps = 3/156 (1%) Query: 18 NVFIEISLGGYPIKYEMDKKSGVLVVDRFISTPMLYPGNYGFIPNTLSDDGDPVDVIMYS 77 NV IEI G +KYE+DK+SG+L VDR + T M YP NYGFIP TL DGDP+DV++ Sbjct: 1 NVVIEIPKGSR-VKYEIDKESGLLPVDRVLYTSMGYPFNYGFIPQTLEGDGDPLDVLVLG 59 Query: 78 SEPILPGSVISTRPIGVMKMEDDGGIDEKILAVPSKNITSLYDSIQSYEDVPNAYLQKVE 137 EP+ PGSV+ RPIGV+ M D+G D+KI+AVP YD I+ ED+P L ++E Sbjct: 60 PEPLFPGSVVRVRPIGVLAMIDEGETDDKIIAVPVD--DPRYDDIKDIEDLPPGLLDEIE 117 Query: 138 HFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEAVKR 173 HFF+HYKDLE+GKW K++GW A K I EA++R Sbjct: 118 HFFEHYKDLEEGKWVKVEGWGDAEEAKKEIKEAIER 153 >gnl|CDD|29533 cd00412, pyrophosphatase, Inorganic pyrophosphatase. These enzymes hydrolyze inorganic pyrophosphate (PPi) to two molecules of orthophosphates (Pi). The reaction requires bivalent cations. The enzymes in general exist as homooligomers.. Length = 155 Score = 196 bits (500), Expect = 3e-51 Identities = 79/157 (50%), Positives = 104/157 (66%), Gaps = 3/157 (1%) Query: 16 DVNVFIEISLGGYPIKYEMDKKSGVLVVDRFISTPMLYPGNYGFIPNTLSDDGDPVDVIM 75 VNV IEI G KYE+DK++G + VDRF+ + M YP NYGFIP TL DDGDP+DV++ Sbjct: 2 VVNVVIEIPKGS-NAKYEIDKETGPIKVDRFLYSSMGYPWNYGFIPQTLEDDGDPLDVLV 60 Query: 76 YSSEPILPGSVISTRPIGVMKMEDDGGIDEKILAVPSKNITSLYDSIQSYEDVPNAYLQK 135 EP+ PGSVI RP+GV+KM D+G D K++AVP + Y I DVP L + Sbjct: 61 IGEEPLFPGSVIRVRPLGVLKMIDEGETDWKVIAVPVDDP--RYSHINDISDVPPHLLDE 118 Query: 136 VEHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEAVK 172 ++HFF+HYKDLE K K+ GW+ A KII E+++ Sbjct: 119 IKHFFEHYKDLEGKKEVKVAGWKDKEEALKIIKESIE 155 >gnl|CDD|30570 COG0221, Ppa, Inorganic pyrophosphatase [Energy production and conversion]. Length = 171 Score = 184 bits (468), Expect = 1e-47 Identities = 89/170 (52%), Positives = 119/170 (70%), Gaps = 4/170 (2%) Query: 4 LNEISLGSNSPIDVNVFIEISLGGYPIKYEMDKKSGVLVVDRFISTPMLYPGNYGFIPNT 63 L++I G + D+NV IEI G IKYE+DK++G L+VDR + TPM YP NYGFIPNT Sbjct: 3 LHKIPAGPD-DEDINVVIEIP-KGSNIKYEVDKETGRLLVDRPLKTPMGYPVNYGFIPNT 60 Query: 64 LSDDGDPVDVIMYSSEPILPGSVISTRPIGVMKMEDDGGIDEKILAVPSKNITSLYDSIQ 123 LSDDGDP+DV++ EP+ PG VI RPIGV+KM D+G D+K++AVP + Y+ I+ Sbjct: 61 LSDDGDPLDVLVIGEEPLAPGCVIQARPIGVLKMIDEGEKDDKVIAVPKLDPR--YEHIK 118 Query: 124 SYEDVPNAYLQKVEHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEAVKR 173 D+P L +++HFF+ YKDLE GKW K++GWE A K I EA++R Sbjct: 119 DISDLPEHLLDEIQHFFETYKDLEKGKWVKVEGWEDAEEAKKEIKEAIER 168 >gnl|CDD|36839 KOG1626, KOG1626, KOG1626, Inorganic pyrophosphatase/Nucleosome remodeling factor, subunit NURF38 [Energy production and conversion]. Length = 279 Score = 91.9 bits (228), Expect = 8e-20 Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 14/159 (8%) Query: 5 NEISLGSNSPIDVNVFIEISLGGYPIKYEMDKKSGVLVVDRFISTPMLYPGNYGFIPNTL 64 +++++ P N +EIS + DKK G L R + Y NYG +P T Sbjct: 42 HDLNMVVEIPRWTNAKMEISKKEPFNPIKQDKKKGKLRFVRNLFPYKGYIWNYGALPQTW 101 Query: 65 SD------------DGDPVDVIMYSSEPILPGSVISTRPIGVMKMEDDGGIDEKILAVPS 112 D D DP+DV+ EP+LPG V+ + +G+M + D+G D KI+A+ Sbjct: 102 EDPNHVDPETKAKGDNDPIDVLEIGQEPVLPGCVLQVKVLGLMALIDEGETDWKIIAIDV 161 Query: 113 KN-ITSLYDSIQSYEDVPNAYLQKVEHFFKHYKDLEDGK 150 + + S Y+ I+ E + L+ +F+ YK + DGK Sbjct: 162 NDPLASEYNDIEDVEKLFPGLLEATRRWFRDYK-IPDGK 199 >gnl|CDD|37916 KOG2705, KOG2705, KOG2705, Predicted membrane protein [Function unknown]. Length = 471 Score = 29.2 bits (65), Expect = 0.57 Identities = 20/97 (20%), Positives = 41/97 (42%), Gaps = 11/97 (11%) Query: 82 LPGSVISTRPIGVMKMEDDGGIDEKILAVPSKNITSLYD-----SIQSYEDVPNAYLQKV 136 +P +++ R IG++ DG + L+ P + +T++ D I ++ +L Sbjct: 119 MPHCILTLRFIGLVMDVYDGAKKPEHLS-PDQKLTAISDKPSLLEIAAFSYFFQGFLVGP 177 Query: 137 EHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEAVKR 173 + Y+ +G+W DG K L ++ R Sbjct: 178 QFTLSKYRSFVNGEWLDSDG-----QPPKSALPSIGR 209 >gnl|CDD|145652 pfam02614, UxaC, Glucuronate isomerase. This is a family of Glucuronate isomerases also known as D-glucuronate isomerase, uronic isomerase, uronate isomerase, or uronic acid isomerase, EC:5.3.1.12. This enzyme catalyses the reactions: D-glucuronate <=> D-fructuronate and D-galacturonate <=> D-tagaturonate. It is not however clear where the experimental evidence for this functional assignment came from and thus this family has no literature reference. Length = 465 Score = 27.6 bits (62), Expect = 2.0 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 14/81 (17%) Query: 69 DPVDVIMY----SSEPILPGSVIST-RPIGVMKMEDDGGID--EKILAVPSKNITSLYDS 121 DP+D + Y + + V+ T RP +K+E++G D EK+ V Sbjct: 154 DPIDDLEYHKALAEDESFSVKVLPTFRPDKALKIENEGFADYVEKLGEVSG-------ID 206 Query: 122 IQSYEDVPNAYLQKVEHFFKH 142 I S++D A ++++ F +H Sbjct: 207 ITSFDDFLEALRKRIDFFHEH 227 >gnl|CDD|145845 pfam02901, PFL, Pyruvate formate lyase. Length = 645 Score = 26.8 bits (60), Expect = 3.2 Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 7/46 (15%) Query: 101 GGIDE---KILAVPSKNITSLYDSIQSYEDVPNAYLQKVEHFFKHY 143 GG DE K + + +TS S+E+V A+ +++++ Y Sbjct: 457 GGRDELTGKQVGPKTGPLTSF----LSFEEVMEAFKKQLDYLADLY 498 >gnl|CDD|38347 KOG3137, KOG3137, KOG3137, Peptide deformylase [Translation, ribosomal structure and biogenesis]. Length = 267 Score = 26.2 bits (57), Expect = 4.8 Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 3/31 (9%) Query: 21 IEISLGGYP---IKYEMDKKSGVLVVDRFIS 48 IS G+P ++E D GVL D+ Sbjct: 214 FSISASGWPARIFQHEYDHLEGVLFFDKMTD 244 >gnl|CDD|88567 cd05127, RasGAP_IQGAP_related, This family represents IQ motif containing GTPase activating protein (IQGAP) which associated with the Ras GTP-binding protein. A primary function of IQGAP proteins is to modulate cytoskeletal architecture. There are three known IQGAP family members: IQGAP1, IQGAP2 and IQGAP3. Human IQGAP1 and IQGAP2 share 62% indentity. IQGAPs are multi-domain molecules having a calponin-homology (CH) domain which binds F-actin, IQGAP-specific repeats, a single WW domain, four IQ motifs that mediate interactions with calmodulin, and a RasGAP related domain that binds active Rho family GTPases. IQGAP is an essential regulator of cytoskeletal function. IQGAP1 negatively regulates Ras family GTPases by stimulating their intrinsic GTPase activity, the protein actually lacks GAP activity. Both IQGAP1 and IQGAP2 specifically bind to Cdc42 and Rac1, but not to RhoA. Despite of their similarities to part of the sequence of RasGAP, neither IQGAP1 nor IQGAP2 interacts with Ras. IQGAP3, only present in mammals, regulates the organization of the cytoskeleton under the regulation of Rac1 and Cdc42 in neuronal cells. The depletion of IQGAP3 is shown to impair neurite or axon outgrowth in neuronal cells with disorganized cytoskeleton.. Length = 325 Score = 25.6 bits (56), Expect = 8.1 Identities = 10/37 (27%), Positives = 20/37 (54%) Query: 31 KYEMDKKSGVLVVDRFISTPMLYPGNYGFIPNTLSDD 67 + E+ K G + RFI+ ++ P N+G + + + D Sbjct: 166 EDEILKVIGNFLYYRFINPAIVSPENFGIVDGSPTPD 202 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.315 0.138 0.403 Gapped Lambda K H 0.267 0.0818 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 2,203,904 Number of extensions: 115671 Number of successful extensions: 226 Number of sequences better than 10.0: 1 Number of HSP's gapped: 221 Number of HSP's successfully gapped: 16 Length of query: 177 Length of database: 6,263,737 Length adjustment: 88 Effective length of query: 89 Effective length of database: 4,362,145 Effective search space: 388230905 Effective search space used: 388230905 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 54 (24.4 bits)