RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780232|ref|YP_003064645.1| inorganic pyrophosphatase [Candidatus Liberibacter asiaticus str. psy62] (177 letters) >3lo0_A Inorganic pyrophosphatase; ALS collaborative crystallography, emerald biostructures, hydrolase, structural genomics; 1.95A {Ehrlichia chaffeensis} Length = 193 Score = 233 bits (595), Expect = 2e-62 Identities = 79/173 (45%), Positives = 115/173 (66%) Query: 1 MVQLNEISLGSNSPIDVNVFIEISLGGYPIKYEMDKKSGVLVVDRFISTPMLYPGNYGFI 60 + L+ ++ G N P ++NV IEIS P+KYE DK+ + VDRF+ T M YP NYGFI Sbjct: 21 SMNLDNVTGGDNVPKEINVIIEISQNSCPVKYEFDKEKNLFCVDRFLPTSMYYPCNYGFI 80 Query: 61 PNTLSDDGDPVDVIMYSSEPILPGSVISTRPIGVMKMEDDGGIDEKILAVPSKNITSLYD 120 P+T + DGDPVDV++ S P++ G+VI RP+GV+ M D+ G D KILAVP+ + Y+ Sbjct: 81 PHTCAGDGDPVDVLVASRFPVMSGAVIRARPVGVLVMHDESGEDVKILAVPTHKVDQYYN 140 Query: 121 SIQSYEDVPNAYLQKVEHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEAVKR 173 +I+ Y D P ++L + HFF YK LE+ K+ ++GW+ V A K+IL A+ + Sbjct: 141 NIKDYSDFPVSFLNSISHFFTFYKKLEEDKFVSVEGWKDVTVAEKLILSALIK 193 >3ld3_A Inorganic pyrophosphatase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.75A {Anaplasma phagocytophilum} PDB: 3lo0_A Length = 199 Score = 224 bits (573), Expect = 7e-60 Identities = 80/170 (47%), Positives = 117/170 (68%) Query: 4 LNEISLGSNSPIDVNVFIEISLGGYPIKYEMDKKSGVLVVDRFISTPMLYPGNYGFIPNT 63 L++I GSN+P +VNV IE+S +P+KYE D+K+G L VDRF+ T M YP NYGFIPNT Sbjct: 24 LDDIGSGSNAPEEVNVVIEVSQDSHPVKYEFDEKNGALWVDRFLPTAMYYPCNYGFIPNT 83 Query: 64 LSDDGDPVDVIMYSSEPILPGSVISTRPIGVMKMEDDGGIDEKILAVPSKNITSLYDSIQ 123 ++ DGDPVDV++ + P++PG+VI RP+GV+ M D+ G D K+LAVP+ + Y +I Sbjct: 84 IAGDGDPVDVLVLARFPVMPGAVICVRPVGVLMMNDEKGEDAKVLAVPATKVDQYYGNIV 143 Query: 124 SYEDVPNAYLQKVEHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEAVKR 173 +Y D+P+++L + HFF YK LE K+ + W+ SA ++I A+ Sbjct: 144 NYSDLPSSFLDSISHFFSFYKKLEKDKFVSVGCWQDAASAKELIRSAIIA 193 >3fq3_A Inorganic pyrophosphatase:bacterial/archaeal inorganic pyrophosphatase; ssgcid, inorganic phosphatase, hydrolase; 1.90A {Brucella melitensis biovar ABORTUS2308} Length = 197 Score = 218 bits (558), Expect = 4e-58 Identities = 98/170 (57%), Positives = 133/170 (78%) Query: 4 LNEISLGSNSPIDVNVFIEISLGGYPIKYEMDKKSGVLVVDRFISTPMLYPGNYGFIPNT 63 ++ IS+GSN P DVNV IE+ +GG PIKYEMDKK+G L+VDRF+ TPM YPGNYGF+P+T Sbjct: 24 IDAISIGSNPPEDVNVIIEVPVGGQPIKYEMDKKAGALIVDRFLYTPMTYPGNYGFVPHT 83 Query: 64 LSDDGDPVDVIMYSSEPILPGSVISTRPIGVMKMEDDGGIDEKILAVPSKNITSLYDSIQ 123 LS+DGDP+DV++ ++ P++PG VI+ RPIGV+ MED+ G DEKI+AVPS ++T Y+ I Sbjct: 84 LSEDGDPIDVLVCNTRPLIPGCVINVRPIGVLVMEDNSGKDEKIIAVPSPHLTRRYEKIH 143 Query: 124 SYEDVPNAYLQKVEHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEAVKR 173 Y D+P L+++ HFF+HYKDLE GKW K+ W + A K I+EA++R Sbjct: 144 DYTDMPEITLKQIAHFFEHYKDLEPGKWVKIGDWGDEDYARKFIVEAIER 193 >3d53_A Inorganic pyrophosphatase; seattle structural genomics center for infectious disease, ssgcid, cytoplasm, hydrolase, magnesium; 2.20A {Rickettsia prowazekii str} PDB: 3emj_A* Length = 173 Score = 217 bits (554), Expect = 1e-57 Identities = 84/170 (49%), Positives = 116/170 (68%), Gaps = 1/170 (0%) Query: 4 LNEISLGSNSPIDVNVFIEISLGGYPIKYEMDKKSGVLVVDRFISTPMLYPGNYGFIPNT 63 + +I +N ++NV IEI + PIKYE DK+SG L VDRF+ T M YP NYGFIP+T Sbjct: 4 IKKIKAKAN-NNEINVIIEIPMNSGPIKYEFDKESGALFVDRFMQTTMSYPCNYGFIPDT 62 Query: 64 LSDDGDPVDVIMYSSEPILPGSVISTRPIGVMKMEDDGGIDEKILAVPSKNITSLYDSIQ 123 LS+DGDPVDV++ + P++PGSVI R IGV+ MED+ G+DEKI+AVP+ + +D I+ Sbjct: 63 LSNDGDPVDVLVVAHHPVVPGSVIKCRAIGVLMMEDESGLDEKIIAVPTSKLDITFDHIK 122 Query: 124 SYEDVPNAYLQKVEHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEAVKR 173 +D+ +++ HFF+HYKDLE GKW K+ GW A +I E + R Sbjct: 123 ELDDLCEMLKKRIVHFFEHYKDLEKGKWVKVTGWGDKVKAETLIKEGIDR 172 >1qez_A Ppase, S-ppase, protein (inorganic pyrophosphatase); thermostability, magnesium, hydrolase; 2.70A {Sulfolobus acidocaldarius} SCOP: b.40.5.1 Length = 173 Score = 200 bits (509), Expect = 2e-52 Identities = 79/168 (47%), Positives = 108/168 (64%), Gaps = 1/168 (0%) Query: 6 EISLGSNSPIDVNVFIEISLGGYPIKYEMDKKSGVLVVDRFISTPMLYPGNYGFIPNTLS 65 ++S G N+P VNV +EI G IKYE D + GV+ VDR + T M YP NYGFIP TL Sbjct: 2 KLSPGKNAPDVVNVLVEIPQGS-NIKYEYDDEEGVIKVDRVLYTSMNYPFNYGFIPGTLE 60 Query: 66 DDGDPVDVIMYSSEPILPGSVISTRPIGVMKMEDDGGIDEKILAVPSKNITSLYDSIQSY 125 +DGDP+DV++ ++ + PGSVI RPIG++ M+D+ G D KI+AVP + +I+ Sbjct: 61 EDGDPLDVLVITNYQLYPGSVIEVRPIGILYMKDEEGEDAKIVAVPKDKTDPSFSNIKDI 120 Query: 126 EDVPNAYLQKVEHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEAVKR 173 D+P A K+ HFF+HYK+LE GK+ K+ GW A I A+KR Sbjct: 121 NDLPQATKNKIVHFFEHYKELEPGKYVKISGWGSATEAKNRIQLAIKR 168 >3gvf_A Inorganic pyrophosphatase; structural genomics, hydrolase, seattle structural genomics center for infectious disease, ssgcid; HET: PGE; 1.75A {Burkholderia pseudomallei 1710B} PDB: 3d63_A* 3eiy_A 3ej0_A* 3ej2_A* 3eiz_A* Length = 196 Score = 199 bits (507), Expect = 3e-52 Identities = 81/170 (47%), Positives = 115/170 (67%) Query: 4 LNEISLGSNSPIDVNVFIEISLGGYPIKYEMDKKSGVLVVDRFISTPMLYPGNYGFIPNT 63 + + G + P D NV IEI P+KYE DK G+LVVDRFI T M YP NYGFIP T Sbjct: 24 FSNVPAGKDLPQDFNVIIEIPAQSEPVKYEADKALGLLVVDRFIGTGMRYPVNYGFIPQT 83 Query: 64 LSDDGDPVDVIMYSSEPILPGSVISTRPIGVMKMEDDGGIDEKILAVPSKNITSLYDSIQ 123 LS DGDPVDV++ + P+L GSV+ R +G++KM D+ G+D K++AVP + + +++ Sbjct: 84 LSGDGDPVDVLVITPFPLLAGSVVRARALGMLKMTDESGVDAKLVAVPHDKVCPMTANLK 143 Query: 124 SYEDVPNAYLQKVEHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEAVKR 173 S +DVP +++HFF+ YK LE GKW K++GW+G+++AHK I + V Sbjct: 144 SIDDVPAYLKDQIKHFFEQYKALEKGKWVKVEGWDGIDAAHKEITDGVAN 193 >2au7_A Inorganic pyrophosphatase; hydrolase, mutant; 1.05A {Escherichia coli} PDB: 1i40_A 1i6t_A 1igp_A 1obw_A 2au6_A 2au8_A 2au9_A 2auu_A 1mjy_A 1faj_A 1ino_A 1ipw_A 1jfd_A 2eip_A 1mjz_A 1mjx_A 1mjw_A 3i4q_A* Length = 175 Score = 190 bits (485), Expect = 1e-49 Identities = 82/170 (48%), Positives = 113/170 (66%) Query: 4 LNEISLGSNSPIDVNVFIEISLGGYPIKYEMDKKSGVLVVDRFISTPMLYPGNYGFIPNT 63 L + G + P D+ V IEI PIKYE+DK+SG L VD+F+ST M YP NYG+I +T Sbjct: 2 LLNVPAGKDLPEDIYVVIEIPANADPIKYEIDKESGALFVDQFMSTAMFYPCNYGYINHT 61 Query: 64 LSDDGDPVDVIMYSSEPILPGSVISTRPIGVMKMEDDGGIDEKILAVPSKNITSLYDSIQ 123 LS DGDPVDV++ + P+ PGSV RP+GV+KM D+ G D K++AVP ++ YD I+ Sbjct: 62 LSLDGDPVDVLVPTPYPLQPGSVTRCRPVGVLKMTDEAGEDAKLVAVPHSKLSKEYDHIK 121 Query: 124 SYEDVPNAYLQKVEHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEAVKR 173 D+P ++ HFF+HYKDLE GKW K++GWE +A I+ + +R Sbjct: 122 DVNDLPELLKAQIAHFFEHYKDLEKGKWVKVEGWENAEAAKAEIVASFER 171 >1sxv_A Inorganic pyrophosphatase; structural genomics, ppase,, hydrolase; 1.30A {Mycobacterium tuberculosis} PDB: 1wcf_A 2uxs_A Length = 172 Score = 183 bits (465), Expect = 2e-47 Identities = 65/159 (40%), Positives = 100/159 (62%), Gaps = 3/159 (1%) Query: 15 IDVNVFIEISLGGYPIKYEMDKKSGVLVVDRFISTPMLYPGNYGFIPNTLSDDGDPVDVI 74 + +V IEI G KYE+D ++G + +DR++ TPM YP +YGFI +TL DDGDP+D + Sbjct: 11 MQFDVTIEIPKGQ-RNKYEVDHETGRVRLDRYLYTPMAYPTDYGFIEDTLGDDGDPLDAL 69 Query: 75 MYSSEPILPGSVISTRPIGVMKMEDDGGIDEKILAVPSKNITSLYDSIQSYEDVPNAYLQ 134 + +P+ PG +++ RP+G+ +M D+ G D+K+L VP+ + +D +Q DVP L Sbjct: 70 VLLPQPVFPGVLVAARPVGMFRMVDEHGGDDKVLCVPAGD--PRWDHVQDIGDVPAFELD 127 Query: 135 KVEHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEAVKR 173 ++HFF HYKDLE GK+ K W A + +V+R Sbjct: 128 AIKHFFVHYKDLEPGKFVKAADWVDRAEAEAEVQRSVER 166 >2bqx_A Inorganic pyrophosphatase; hydrolase; 1.90A {Helicobacter pylori} PDB: 1ygz_A 2bqy_A Length = 173 Score = 178 bits (454), Expect = 5e-46 Identities = 72/170 (42%), Positives = 107/170 (62%), Gaps = 2/170 (1%) Query: 4 LNEISLGSNSPIDVNVFIEISLGGYPIKYEMDKKSGVLVVDRFISTPMLYPGNYGFIPNT 63 L ++ + ++ + V IEIS IKYE+DK+SG L+VDR + YP NYGF+PNT Sbjct: 3 LEKLEVSHDAD-SLCVVIEISKHS-NIKYELDKESGALMVDRVLYGAQNYPANYGFVPNT 60 Query: 64 LSDDGDPVDVIMYSSEPILPGSVISTRPIGVMKMEDDGGIDEKILAVPSKNITSLYDSIQ 123 L DGDPVD ++ S GSV+ R +GV+ MED+ G+DEK++A+P I + ++ Sbjct: 61 LGSDGDPVDALVLSDVAFQAGSVVKARLVGVLNMEDESGMDEKLIALPIDKIDPTHSYVK 120 Query: 124 SYEDVPNAYLQKVEHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEAVKR 173 +D+ L K++HFF+ YKDLE KW K+ G+E SA K++ +A+K Sbjct: 121 DIDDLSKHTLDKIKHFFETYKDLEPNKWVKVKGFENKESAIKVLEKAIKA 170 >3i98_A TH-IPP; pyrophosphatase, beta barrel, hydrolase; 1.85A {Thermococcus thioreducens} PDB: 1ude_A 1twl_A Length = 178 Score = 174 bits (443), Expect = 8e-45 Identities = 72/169 (42%), Positives = 105/169 (62%), Gaps = 4/169 (2%) Query: 5 NEISLGSNSPIDVNVFIEISLGGYPIKYEMDKKSGVLVVDRFISTPMLYPGNYGFIPNTL 64 +E+ G P V IEI G KYE+DKK+G+L +DR + +P YP +YG IP T Sbjct: 5 HELEPGPEVPEVVYALIEIPKGS-RNKYELDKKTGLLKLDRVLYSPFFYPVDYGIIPQTW 63 Query: 65 SDDGDPVDVIMYSSEPILPGSVISTRPIGVMKMEDDGGIDEKILAVPSKNITSLYDSIQS 124 DDGDP D+++ EP+ P ++I RPIG+MKMED G D K+LAVP ++ ++ + Sbjct: 64 YDDGDPFDIMVIMREPVYPLTIIEARPIGIMKMEDSGDKDWKVLAVPVED--PYFNDWKD 121 Query: 125 YEDVPNAYLQKVEHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEAVKR 173 DVP A+L ++ HFF+ YK+L+ GK K++GW A + IL A++ Sbjct: 122 ISDVPKAFLDEIAHFFQRYKELQ-GKTTKIEGWGNAEEAKREILRAIEM 169 >2prd_A Pyrophosphate phosphohydrolase; 2.00A {Thermus thermophilus HB8} SCOP: b.40.5.1 Length = 174 Score = 172 bits (437), Expect = 4e-44 Identities = 66/172 (38%), Positives = 103/172 (59%), Gaps = 5/172 (2%) Query: 4 LNEISLGSNSPIDVNVFIEISLGGYPIKYEMDKKSGVLVVDRFISTPMLYPGNYGFIPNT 63 L + +G +P V++ IE+ G KYE D G + +DR + YPG+YGFIP+T Sbjct: 3 LKSLPVGDKAPEVVHMVIEVPRGS-GNKYEYDPDLGAIKLDRVLPGAQFYPGDYGFIPST 61 Query: 64 LSDDGDPVDVIMYSSEPILPGSVISTRPIGVMKMEDDGGIDEKILAVPSKNITSLYDSIQ 123 L++DGDP+D ++ S+ P+LPG V+ R +G++ MED+ G D K++ V +++ D IQ Sbjct: 62 LAEDGDPLDGLVLSTYPLLPGVVVEVRVVGLLLMEDEKGGDAKVIGVVAEDQR--LDHIQ 119 Query: 124 SYEDVPNAYLQKVEHFFKHYKDLE--DGKWAKLDGWEGVNSAHKIILEAVKR 173 DVP Q+++HFF+ YK LE GKW K+ GW +A + + + R Sbjct: 120 DIGDVPEGVKQEIQHFFETYKALEAKKGKWVKVTGWRDRKAALEEVRACIAR 171 >1e9g_A Ppase, inorganic pyrophosphatase; pyrophosphate phosphohydrolase, hydrolase, manganese; HET: PO4; 1.15A {Saccharomyces cerevisiae} SCOP: b.40.5.1 PDB: 1e6a_A* 1wgi_A 1wgj_A 2ihp_A* 8prk_A 2ik6_A 2ik2_A 2ik4_A 117e_A 2ik1_A* 2ik9_A 2ik0_A 2ik7_A 1m38_A 1ypp_A 1huk_A 1huj_A 1pyp_A Length = 286 Score = 158 bits (400), Expect = 8e-40 Identities = 46/196 (23%), Positives = 72/196 (36%), Gaps = 31/196 (15%) Query: 7 ISLGSNSPIDV-NVFIEISLGGYPIKYEMDK-----------KSGVLVVDRFISTPMLYP 54 I L ++ ++ N+ +EI K E+ K K G L R Y Sbjct: 32 IPLYADKENNIFNMVVEIPRWTN-AKLEITKEETLNPIIQDTKKGKLRFVRNCFPHHGYI 90 Query: 55 GNYGFIPNTLSD------------DGDPVDVIMYSSEPILPGSVISTRPIGVMKMEDDGG 102 NYG P T D D DP+DV+ G V + +G+M + D+G Sbjct: 91 HNYGAFPQTWEDPNVSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDEGE 150 Query: 103 IDEKILAVPSKN-ITSLYDSIQSYEDVPNAYLQKVEHFFKHYKDLEDGKWAKLDGWEG-- 159 D K++A+ + + + I+ E L+ +F+ YK + GK + G Sbjct: 151 TDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRATNEWFRIYKIPD-GKPENQFAFSGEA 209 Query: 160 --VNSAHKIILEAVKR 173 A II E Sbjct: 210 KNKKYALDIIKETHDS 225 >3ejj_A Colony stimulating factor-1; growth factor-receptor complex, receptor tyrosine kinase, cytokine, 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 1hmc_A Length = 155 Score = 30.6 bits (69), Expect = 0.18 Identities = 10/41 (24%), Positives = 21/41 (51%), Gaps = 1/41 (2%) Query: 122 IQSYEDVPNAYLQKVEHFFKHYKDLEDGKWAKLDGWEGVNS 162 ++++ + P L+K+++FF K+L + W NS Sbjct: 103 VRTFHETPLQLLEKIKNFFNETKNLLEKDWNIFT-KNCNNS 142 >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, infectious diseases, center for structural genomics of infectious diseases; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* Length = 236 Score = 30.0 bits (67), Expect = 0.33 Identities = 7/55 (12%), Positives = 21/55 (38%), Gaps = 5/55 (9%) Query: 125 YEDVPNAYLQKVEHFFKHYKDL--EDGKWAKLDGWEGVNSAHKIILEAVKRGIKE 177 E + ++ ++ + Y +L D +D + + I A++ + + Sbjct: 181 IEKMDISFFERA---RERYLELANSDDSVVMIDAAQSIEQVTADIRRALQDWLSQ 232 >2ccj_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, ATP-binding; HET: TMP; 1.7A {Staphylococcus aureus} PDB: 2cck_A 2ccg_A* Length = 205 Score = 28.4 bits (62), Expect = 0.93 Identities = 4/65 (6%), Positives = 24/65 (36%) Query: 113 KNITSLYDSIQSYEDVPNAYLQKVEHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEAVK 172 + I + + +KV ++ E ++ ++ + + + + + + Sbjct: 140 ERIIKNSRDQNRLDQEDLKFHEKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTII 199 Query: 173 RGIKE 177 + +++ Sbjct: 200 KYLEK 204 >4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* Length = 213 Score = 28.4 bits (62), Expect = 0.97 Identities = 7/55 (12%), Positives = 16/55 (29%), Gaps = 1/55 (1%) Query: 123 QSYEDVPNAYLQKVEHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEAVKRGIKE 177 E + + + +D +D + + + I V +KE Sbjct: 157 DRIEQESFDFFNRTRARYLELAA-QDKSIHTIDATQPLEAVMDAIRTTVTHWVKE 210 >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, cytoplasm, hydrolase, nucleotide-B protease, serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A Length = 543 Score = 28.1 bits (62), Expect = 1.0 Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 4/49 (8%) Query: 101 GGIDEKILAVPSKNITSL---YDSIQSYEDVPNAYLQKVE-HFFKHYKD 145 GG+ EK L +T++ D+ + ED+P + + + H + Sbjct: 476 GGLKEKALGAHRAGLTTIIAPKDNEKDIEDIPESVREGLTFILASHLDE 524 >3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A Length = 390 Score = 28.3 bits (63), Expect = 1.1 Identities = 7/57 (12%), Positives = 21/57 (36%), Gaps = 4/57 (7%) Query: 96 KMEDDGGIDEKILAVPSKNITSLYDSIQSYEDVPNAYLQKVEHFFKHYKDLEDGKWA 152 ++ ++ + +L I +D Y + V+H +K +++ + Sbjct: 333 PVQGWDHGTTHLINAAKLDEANLPKEINLVDD----YFELVQHEYKKWQENSEQGRR 385 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 27.6 bits (61), Expect = 1.8 Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 20/62 (32%) Query: 82 LPGSVISTRPIGVMKMED--DGGIDEKILAVPSK--NITSL-YDSIQSYEDVPNAYLQKV 136 LP S++ ED + E VPS +I++L + +Q Y + N++L Sbjct: 319 LPPSIL----------EDSLENN--E---GVPSPMLSISNLTQEQVQDYVNKTNSHLPAG 363 Query: 137 EH 138 + Sbjct: 364 KQ 365 Score = 26.8 bits (59), Expect = 2.9 Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 19/65 (29%) Query: 85 SVISTRPIGVMKMEDDGGIDEKILAVPSKNITSLYDSIQSYEDVPNAYLQKVEHFFKHYK 144 STRP+ + G + E +L VP T+ + A + E F K Sbjct: 2 DAYSTRPL-TLS---HGSL-EHVLLVP----TASF---------FIASQLQ-EQFNKILP 42 Query: 145 DLEDG 149 + +G Sbjct: 43 EPTEG 47 >1uzx_A VPS23, STP22, vacuolar protein sorting-associated protein VPS23; transport protein, transport protein/complex, UEV, E2 variant, ubquitin, ESCRT-I; HET: MES; 1.85A {Saccharomyces cerevisiae} SCOP: d.20.1.2 Length = 169 Score = 27.2 bits (60), Expect = 2.3 Identities = 6/39 (15%), Positives = 13/39 (33%) Query: 108 LAVPSKNITSLYDSIQSYEDVPNAYLQKVEHFFKHYKDL 146 ++VP + L+ IQ + ++ L Sbjct: 15 ISVPEAVVNWLFKVIQPIYNDGRTTFHDSLALLDNFHSL 53 >1nn5_A Similar to deoxythymidylate kinase (thymidylate kinase); P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* Length = 215 Score = 26.3 bits (57), Expect = 3.5 Identities = 9/53 (16%), Positives = 19/53 (35%), Gaps = 2/53 (3%) Query: 125 YEDVPNAYLQKVEHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEAVKRGIKE 177 YE+ A+ ++ F W +D + + + H+ I + I Sbjct: 154 YENG--AFQERALRCFHQLMKDTTLNWKMVDASKSIEAVHEDIRVLSEDAIAT 204 >1f6f_A Placental lactogen; 4-helical bundle, alpha helical bundle, ternary complex, FN III domains, beta sheet domains, cytokine-receptor complex; 2.30A {Ovis aries} SCOP: a.26.1.1 Length = 199 Score = 26.0 bits (57), Expect = 4.8 Identities = 7/32 (21%), Positives = 12/32 (37%) Query: 118 LYDSIQSYEDVPNAYLQKVEHFFKHYKDLEDG 149 + + + A L K + + K L DG Sbjct: 100 AVTELANSKGTSPALLTKAQEIKEKAKVLVDG 131 >2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 2o01_3* Length = 276 Score = 25.8 bits (56), Expect = 6.0 Identities = 9/17 (52%), Positives = 10/17 (58%) Query: 53 YPGNYGFIPNTLSDDGD 69 PG+YGF P LSD Sbjct: 73 LPGDYGFDPLGLSDPEG 89 >2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A* Length = 197 Score = 25.7 bits (55), Expect = 6.4 Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 2/66 (3%) Query: 111 PSKNITSLYDSIQSYEDVPNAYLQKVEHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEA 170 + + +E +L++V + + LDG + H+ ++ Sbjct: 131 DVETALKRKGELNRFEK--REFLERVREGYLVLAREHPERIVVLDGKRSIEEIHRDVVRE 188 Query: 171 VKRGIK 176 VKR K Sbjct: 189 VKRRWK 194 >2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, hydrolase; 2.11A {Bacillus subtilis} PDB: 2e8z_A* 2e9b_A* Length = 718 Score = 25.3 bits (54), Expect = 7.2 Identities = 24/182 (13%), Positives = 50/182 (27%), Gaps = 27/182 (14%) Query: 19 VFIEISLGGYPIKYEMDKKSGVLVVDRFISTPMLYPGNYGFI--PNTLSDDGD------P 70 V + L GY + + S + + + G G + P+ + P Sbjct: 153 VTVTGDLHGYEYLFCICNNSEWMETVDQYAKAVTVNGEKGVVLRPDQMKWTAPLKPFSHP 212 Query: 71 VDVIMY-----------SSEPILPGSVISTRPIGVMKMEDDGGIDEKI-----LAVPSKN 114 VD ++Y +S I G ++ + G + L V Sbjct: 213 VDAVIYETHLRDFSIHENSGMINKGKYLALTE---TDTQTANGSSSGLAYVKELGVTHVE 269 Query: 115 ITSLYDSIQSYEDVPNAYLQKVEHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEAVKRG 174 + + D E+ P + + D ++I + G Sbjct: 270 LLPVNDFAGVDEEKPLDAYNWGYNPLHFFAPEGSYASNPHDPQTRKTELKQMINTLHQHG 329 Query: 175 IK 176 ++ Sbjct: 330 LR 331 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 25.3 bits (54), Expect = 7.9 Identities = 8/38 (21%), Positives = 15/38 (39%), Gaps = 15/38 (39%) Query: 133 LQKVEHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEA 170 L+K++ K Y D +SA + ++A Sbjct: 22 LKKLQASLKLYAD---------------DSAPALAIKA 44 >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} Length = 604 Score = 25.1 bits (54), Expect = 9.0 Identities = 7/56 (12%), Positives = 15/56 (26%), Gaps = 19/56 (33%) Query: 101 GGIDEKILA----------VPSKNITSLYDSIQSYEDVPNAYLQKVE-HFFKHYKD 145 GG I A +P N + + +K++ + + Sbjct: 524 GGATPAIEAAIEAGIKMVIIPKSNEKDV--------FLSKDKAEKIQIFPVETIDE 571 >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, , isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 Length = 699 Score = 24.9 bits (54), Expect = 9.5 Identities = 6/26 (23%), Positives = 15/26 (57%) Query: 108 LAVPSKNITSLYDSIQSYEDVPNAYL 133 L V +++ Y++ + Y + +AY+ Sbjct: 398 LKVNGQSVVLGYENEEGYLNPDSAYI 423 >1r9d_A Glycerol dehydratase; radical SAM, lyase; 1.80A {Clostridium butyricum} SCOP: c.7.1.1 PDB: 1r8w_A 1r9e_A Length = 787 Score = 25.2 bits (55), Expect = 9.8 Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 9/71 (12%) Query: 79 EPILPGSVISTRPIG------VMKMEDDGGIDEKILAVPSKNITSLYDSIQSYEDVPNAY 132 EP PG ++++ + G D+ P T ++ ++S+++ AY Sbjct: 435 EPQKPGKTEGWHDSAFFNLARIVELTINSGFDKNKQIGP---KTQNFEEMKSFDEFMKAY 491 Query: 133 LQKVEHFFKHY 143 ++E+F KH Sbjct: 492 KAQMEYFVKHM 502 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.315 0.138 0.403 Gapped Lambda K H 0.267 0.0449 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,600,701 Number of extensions: 74658 Number of successful extensions: 206 Number of sequences better than 10.0: 1 Number of HSP's gapped: 194 Number of HSP's successfully gapped: 38 Length of query: 177 Length of database: 5,693,230 Length adjustment: 86 Effective length of query: 91 Effective length of database: 3,608,246 Effective search space: 328350386 Effective search space used: 328350386 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 53 (24.9 bits)