RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780232|ref|YP_003064645.1| inorganic pyrophosphatase
[Candidatus Liberibacter asiaticus str. psy62]
         (177 letters)



>3lo0_A Inorganic pyrophosphatase; ALS collaborative crystallography,
           emerald biostructures, hydrolase, structural genomics;
           1.95A {Ehrlichia chaffeensis}
          Length = 193

 Score =  233 bits (595), Expect = 2e-62
 Identities = 79/173 (45%), Positives = 115/173 (66%)

Query: 1   MVQLNEISLGSNSPIDVNVFIEISLGGYPIKYEMDKKSGVLVVDRFISTPMLYPGNYGFI 60
            + L+ ++ G N P ++NV IEIS    P+KYE DK+  +  VDRF+ T M YP NYGFI
Sbjct: 21  SMNLDNVTGGDNVPKEINVIIEISQNSCPVKYEFDKEKNLFCVDRFLPTSMYYPCNYGFI 80

Query: 61  PNTLSDDGDPVDVIMYSSEPILPGSVISTRPIGVMKMEDDGGIDEKILAVPSKNITSLYD 120
           P+T + DGDPVDV++ S  P++ G+VI  RP+GV+ M D+ G D KILAVP+  +   Y+
Sbjct: 81  PHTCAGDGDPVDVLVASRFPVMSGAVIRARPVGVLVMHDESGEDVKILAVPTHKVDQYYN 140

Query: 121 SIQSYEDVPNAYLQKVEHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEAVKR 173
           +I+ Y D P ++L  + HFF  YK LE+ K+  ++GW+ V  A K+IL A+ +
Sbjct: 141 NIKDYSDFPVSFLNSISHFFTFYKKLEEDKFVSVEGWKDVTVAEKLILSALIK 193


>3ld3_A Inorganic pyrophosphatase; structural genomics, seattle structural
           genomics center for infectious disease, ssgcid,
           hydrolase; 1.75A {Anaplasma phagocytophilum} PDB: 3lo0_A
          Length = 199

 Score =  224 bits (573), Expect = 7e-60
 Identities = 80/170 (47%), Positives = 117/170 (68%)

Query: 4   LNEISLGSNSPIDVNVFIEISLGGYPIKYEMDKKSGVLVVDRFISTPMLYPGNYGFIPNT 63
           L++I  GSN+P +VNV IE+S   +P+KYE D+K+G L VDRF+ T M YP NYGFIPNT
Sbjct: 24  LDDIGSGSNAPEEVNVVIEVSQDSHPVKYEFDEKNGALWVDRFLPTAMYYPCNYGFIPNT 83

Query: 64  LSDDGDPVDVIMYSSEPILPGSVISTRPIGVMKMEDDGGIDEKILAVPSKNITSLYDSIQ 123
           ++ DGDPVDV++ +  P++PG+VI  RP+GV+ M D+ G D K+LAVP+  +   Y +I 
Sbjct: 84  IAGDGDPVDVLVLARFPVMPGAVICVRPVGVLMMNDEKGEDAKVLAVPATKVDQYYGNIV 143

Query: 124 SYEDVPNAYLQKVEHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEAVKR 173
           +Y D+P+++L  + HFF  YK LE  K+  +  W+   SA ++I  A+  
Sbjct: 144 NYSDLPSSFLDSISHFFSFYKKLEKDKFVSVGCWQDAASAKELIRSAIIA 193


>3fq3_A Inorganic pyrophosphatase:bacterial/archaeal inorganic
           pyrophosphatase; ssgcid, inorganic phosphatase,
           hydrolase; 1.90A {Brucella melitensis biovar
           ABORTUS2308}
          Length = 197

 Score =  218 bits (558), Expect = 4e-58
 Identities = 98/170 (57%), Positives = 133/170 (78%)

Query: 4   LNEISLGSNSPIDVNVFIEISLGGYPIKYEMDKKSGVLVVDRFISTPMLYPGNYGFIPNT 63
           ++ IS+GSN P DVNV IE+ +GG PIKYEMDKK+G L+VDRF+ TPM YPGNYGF+P+T
Sbjct: 24  IDAISIGSNPPEDVNVIIEVPVGGQPIKYEMDKKAGALIVDRFLYTPMTYPGNYGFVPHT 83

Query: 64  LSDDGDPVDVIMYSSEPILPGSVISTRPIGVMKMEDDGGIDEKILAVPSKNITSLYDSIQ 123
           LS+DGDP+DV++ ++ P++PG VI+ RPIGV+ MED+ G DEKI+AVPS ++T  Y+ I 
Sbjct: 84  LSEDGDPIDVLVCNTRPLIPGCVINVRPIGVLVMEDNSGKDEKIIAVPSPHLTRRYEKIH 143

Query: 124 SYEDVPNAYLQKVEHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEAVKR 173
            Y D+P   L+++ HFF+HYKDLE GKW K+  W   + A K I+EA++R
Sbjct: 144 DYTDMPEITLKQIAHFFEHYKDLEPGKWVKIGDWGDEDYARKFIVEAIER 193


>3d53_A Inorganic pyrophosphatase; seattle structural genomics center for
           infectious disease, ssgcid, cytoplasm, hydrolase,
           magnesium; 2.20A {Rickettsia prowazekii str} PDB:
           3emj_A*
          Length = 173

 Score =  217 bits (554), Expect = 1e-57
 Identities = 84/170 (49%), Positives = 116/170 (68%), Gaps = 1/170 (0%)

Query: 4   LNEISLGSNSPIDVNVFIEISLGGYPIKYEMDKKSGVLVVDRFISTPMLYPGNYGFIPNT 63
           + +I   +N   ++NV IEI +   PIKYE DK+SG L VDRF+ T M YP NYGFIP+T
Sbjct: 4   IKKIKAKAN-NNEINVIIEIPMNSGPIKYEFDKESGALFVDRFMQTTMSYPCNYGFIPDT 62

Query: 64  LSDDGDPVDVIMYSSEPILPGSVISTRPIGVMKMEDDGGIDEKILAVPSKNITSLYDSIQ 123
           LS+DGDPVDV++ +  P++PGSVI  R IGV+ MED+ G+DEKI+AVP+  +   +D I+
Sbjct: 63  LSNDGDPVDVLVVAHHPVVPGSVIKCRAIGVLMMEDESGLDEKIIAVPTSKLDITFDHIK 122

Query: 124 SYEDVPNAYLQKVEHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEAVKR 173
             +D+     +++ HFF+HYKDLE GKW K+ GW     A  +I E + R
Sbjct: 123 ELDDLCEMLKKRIVHFFEHYKDLEKGKWVKVTGWGDKVKAETLIKEGIDR 172


>1qez_A Ppase, S-ppase, protein (inorganic pyrophosphatase);
           thermostability, magnesium, hydrolase; 2.70A {Sulfolobus
           acidocaldarius} SCOP: b.40.5.1
          Length = 173

 Score =  200 bits (509), Expect = 2e-52
 Identities = 79/168 (47%), Positives = 108/168 (64%), Gaps = 1/168 (0%)

Query: 6   EISLGSNSPIDVNVFIEISLGGYPIKYEMDKKSGVLVVDRFISTPMLYPGNYGFIPNTLS 65
           ++S G N+P  VNV +EI  G   IKYE D + GV+ VDR + T M YP NYGFIP TL 
Sbjct: 2   KLSPGKNAPDVVNVLVEIPQGS-NIKYEYDDEEGVIKVDRVLYTSMNYPFNYGFIPGTLE 60

Query: 66  DDGDPVDVIMYSSEPILPGSVISTRPIGVMKMEDDGGIDEKILAVPSKNITSLYDSIQSY 125
           +DGDP+DV++ ++  + PGSVI  RPIG++ M+D+ G D KI+AVP       + +I+  
Sbjct: 61  EDGDPLDVLVITNYQLYPGSVIEVRPIGILYMKDEEGEDAKIVAVPKDKTDPSFSNIKDI 120

Query: 126 EDVPNAYLQKVEHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEAVKR 173
            D+P A   K+ HFF+HYK+LE GK+ K+ GW     A   I  A+KR
Sbjct: 121 NDLPQATKNKIVHFFEHYKELEPGKYVKISGWGSATEAKNRIQLAIKR 168


>3gvf_A Inorganic pyrophosphatase; structural genomics, hydrolase, seattle
           structural genomics center for infectious disease,
           ssgcid; HET: PGE; 1.75A {Burkholderia pseudomallei
           1710B} PDB: 3d63_A* 3eiy_A 3ej0_A* 3ej2_A* 3eiz_A*
          Length = 196

 Score =  199 bits (507), Expect = 3e-52
 Identities = 81/170 (47%), Positives = 115/170 (67%)

Query: 4   LNEISLGSNSPIDVNVFIEISLGGYPIKYEMDKKSGVLVVDRFISTPMLYPGNYGFIPNT 63
            + +  G + P D NV IEI     P+KYE DK  G+LVVDRFI T M YP NYGFIP T
Sbjct: 24  FSNVPAGKDLPQDFNVIIEIPAQSEPVKYEADKALGLLVVDRFIGTGMRYPVNYGFIPQT 83

Query: 64  LSDDGDPVDVIMYSSEPILPGSVISTRPIGVMKMEDDGGIDEKILAVPSKNITSLYDSIQ 123
           LS DGDPVDV++ +  P+L GSV+  R +G++KM D+ G+D K++AVP   +  +  +++
Sbjct: 84  LSGDGDPVDVLVITPFPLLAGSVVRARALGMLKMTDESGVDAKLVAVPHDKVCPMTANLK 143

Query: 124 SYEDVPNAYLQKVEHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEAVKR 173
           S +DVP     +++HFF+ YK LE GKW K++GW+G+++AHK I + V  
Sbjct: 144 SIDDVPAYLKDQIKHFFEQYKALEKGKWVKVEGWDGIDAAHKEITDGVAN 193


>2au7_A Inorganic pyrophosphatase; hydrolase, mutant; 1.05A {Escherichia
           coli} PDB: 1i40_A 1i6t_A 1igp_A 1obw_A 2au6_A 2au8_A
           2au9_A 2auu_A 1mjy_A 1faj_A 1ino_A 1ipw_A 1jfd_A 2eip_A
           1mjz_A 1mjx_A 1mjw_A 3i4q_A*
          Length = 175

 Score =  190 bits (485), Expect = 1e-49
 Identities = 82/170 (48%), Positives = 113/170 (66%)

Query: 4   LNEISLGSNSPIDVNVFIEISLGGYPIKYEMDKKSGVLVVDRFISTPMLYPGNYGFIPNT 63
           L  +  G + P D+ V IEI     PIKYE+DK+SG L VD+F+ST M YP NYG+I +T
Sbjct: 2   LLNVPAGKDLPEDIYVVIEIPANADPIKYEIDKESGALFVDQFMSTAMFYPCNYGYINHT 61

Query: 64  LSDDGDPVDVIMYSSEPILPGSVISTRPIGVMKMEDDGGIDEKILAVPSKNITSLYDSIQ 123
           LS DGDPVDV++ +  P+ PGSV   RP+GV+KM D+ G D K++AVP   ++  YD I+
Sbjct: 62  LSLDGDPVDVLVPTPYPLQPGSVTRCRPVGVLKMTDEAGEDAKLVAVPHSKLSKEYDHIK 121

Query: 124 SYEDVPNAYLQKVEHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEAVKR 173
              D+P     ++ HFF+HYKDLE GKW K++GWE   +A   I+ + +R
Sbjct: 122 DVNDLPELLKAQIAHFFEHYKDLEKGKWVKVEGWENAEAAKAEIVASFER 171


>1sxv_A Inorganic pyrophosphatase; structural genomics, ppase,, hydrolase;
           1.30A {Mycobacterium tuberculosis} PDB: 1wcf_A 2uxs_A
          Length = 172

 Score =  183 bits (465), Expect = 2e-47
 Identities = 65/159 (40%), Positives = 100/159 (62%), Gaps = 3/159 (1%)

Query: 15  IDVNVFIEISLGGYPIKYEMDKKSGVLVVDRFISTPMLYPGNYGFIPNTLSDDGDPVDVI 74
           +  +V IEI  G    KYE+D ++G + +DR++ TPM YP +YGFI +TL DDGDP+D +
Sbjct: 11  MQFDVTIEIPKGQ-RNKYEVDHETGRVRLDRYLYTPMAYPTDYGFIEDTLGDDGDPLDAL 69

Query: 75  MYSSEPILPGSVISTRPIGVMKMEDDGGIDEKILAVPSKNITSLYDSIQSYEDVPNAYLQ 134
           +   +P+ PG +++ RP+G+ +M D+ G D+K+L VP+ +    +D +Q   DVP   L 
Sbjct: 70  VLLPQPVFPGVLVAARPVGMFRMVDEHGGDDKVLCVPAGD--PRWDHVQDIGDVPAFELD 127

Query: 135 KVEHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEAVKR 173
            ++HFF HYKDLE GK+ K   W     A   +  +V+R
Sbjct: 128 AIKHFFVHYKDLEPGKFVKAADWVDRAEAEAEVQRSVER 166


>2bqx_A Inorganic pyrophosphatase; hydrolase; 1.90A {Helicobacter pylori}
           PDB: 1ygz_A 2bqy_A
          Length = 173

 Score =  178 bits (454), Expect = 5e-46
 Identities = 72/170 (42%), Positives = 107/170 (62%), Gaps = 2/170 (1%)

Query: 4   LNEISLGSNSPIDVNVFIEISLGGYPIKYEMDKKSGVLVVDRFISTPMLYPGNYGFIPNT 63
           L ++ +  ++   + V IEIS     IKYE+DK+SG L+VDR +     YP NYGF+PNT
Sbjct: 3   LEKLEVSHDAD-SLCVVIEISKHS-NIKYELDKESGALMVDRVLYGAQNYPANYGFVPNT 60

Query: 64  LSDDGDPVDVIMYSSEPILPGSVISTRPIGVMKMEDDGGIDEKILAVPSKNITSLYDSIQ 123
           L  DGDPVD ++ S      GSV+  R +GV+ MED+ G+DEK++A+P   I   +  ++
Sbjct: 61  LGSDGDPVDALVLSDVAFQAGSVVKARLVGVLNMEDESGMDEKLIALPIDKIDPTHSYVK 120

Query: 124 SYEDVPNAYLQKVEHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEAVKR 173
             +D+    L K++HFF+ YKDLE  KW K+ G+E   SA K++ +A+K 
Sbjct: 121 DIDDLSKHTLDKIKHFFETYKDLEPNKWVKVKGFENKESAIKVLEKAIKA 170


>3i98_A TH-IPP; pyrophosphatase, beta barrel, hydrolase; 1.85A
           {Thermococcus thioreducens} PDB: 1ude_A 1twl_A
          Length = 178

 Score =  174 bits (443), Expect = 8e-45
 Identities = 72/169 (42%), Positives = 105/169 (62%), Gaps = 4/169 (2%)

Query: 5   NEISLGSNSPIDVNVFIEISLGGYPIKYEMDKKSGVLVVDRFISTPMLYPGNYGFIPNTL 64
           +E+  G   P  V   IEI  G    KYE+DKK+G+L +DR + +P  YP +YG IP T 
Sbjct: 5   HELEPGPEVPEVVYALIEIPKGS-RNKYELDKKTGLLKLDRVLYSPFFYPVDYGIIPQTW 63

Query: 65  SDDGDPVDVIMYSSEPILPGSVISTRPIGVMKMEDDGGIDEKILAVPSKNITSLYDSIQS 124
            DDGDP D+++   EP+ P ++I  RPIG+MKMED G  D K+LAVP ++    ++  + 
Sbjct: 64  YDDGDPFDIMVIMREPVYPLTIIEARPIGIMKMEDSGDKDWKVLAVPVED--PYFNDWKD 121

Query: 125 YEDVPNAYLQKVEHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEAVKR 173
             DVP A+L ++ HFF+ YK+L+ GK  K++GW     A + IL A++ 
Sbjct: 122 ISDVPKAFLDEIAHFFQRYKELQ-GKTTKIEGWGNAEEAKREILRAIEM 169


>2prd_A Pyrophosphate phosphohydrolase; 2.00A {Thermus thermophilus HB8}
           SCOP: b.40.5.1
          Length = 174

 Score =  172 bits (437), Expect = 4e-44
 Identities = 66/172 (38%), Positives = 103/172 (59%), Gaps = 5/172 (2%)

Query: 4   LNEISLGSNSPIDVNVFIEISLGGYPIKYEMDKKSGVLVVDRFISTPMLYPGNYGFIPNT 63
           L  + +G  +P  V++ IE+  G    KYE D   G + +DR +     YPG+YGFIP+T
Sbjct: 3   LKSLPVGDKAPEVVHMVIEVPRGS-GNKYEYDPDLGAIKLDRVLPGAQFYPGDYGFIPST 61

Query: 64  LSDDGDPVDVIMYSSEPILPGSVISTRPIGVMKMEDDGGIDEKILAVPSKNITSLYDSIQ 123
           L++DGDP+D ++ S+ P+LPG V+  R +G++ MED+ G D K++ V +++     D IQ
Sbjct: 62  LAEDGDPLDGLVLSTYPLLPGVVVEVRVVGLLLMEDEKGGDAKVIGVVAEDQR--LDHIQ 119

Query: 124 SYEDVPNAYLQKVEHFFKHYKDLE--DGKWAKLDGWEGVNSAHKIILEAVKR 173
              DVP    Q+++HFF+ YK LE   GKW K+ GW    +A + +   + R
Sbjct: 120 DIGDVPEGVKQEIQHFFETYKALEAKKGKWVKVTGWRDRKAALEEVRACIAR 171


>1e9g_A Ppase, inorganic pyrophosphatase; pyrophosphate phosphohydrolase,
           hydrolase, manganese; HET: PO4; 1.15A {Saccharomyces
           cerevisiae} SCOP: b.40.5.1 PDB: 1e6a_A* 1wgi_A 1wgj_A
           2ihp_A* 8prk_A 2ik6_A 2ik2_A 2ik4_A 117e_A 2ik1_A*
           2ik9_A 2ik0_A 2ik7_A 1m38_A 1ypp_A 1huk_A 1huj_A 1pyp_A
          Length = 286

 Score =  158 bits (400), Expect = 8e-40
 Identities = 46/196 (23%), Positives = 72/196 (36%), Gaps = 31/196 (15%)

Query: 7   ISLGSNSPIDV-NVFIEISLGGYPIKYEMDK-----------KSGVLVVDRFISTPMLYP 54
           I L ++   ++ N+ +EI       K E+ K           K G L   R       Y 
Sbjct: 32  IPLYADKENNIFNMVVEIPRWTN-AKLEITKEETLNPIIQDTKKGKLRFVRNCFPHHGYI 90

Query: 55  GNYGFIPNTLSD------------DGDPVDVIMYSSEPILPGSVISTRPIGVMKMEDDGG 102
            NYG  P T  D            D DP+DV+         G V   + +G+M + D+G 
Sbjct: 91  HNYGAFPQTWEDPNVSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDEGE 150

Query: 103 IDEKILAVPSKN-ITSLYDSIQSYEDVPNAYLQKVEHFFKHYKDLEDGKWAKLDGWEG-- 159
            D K++A+   + +    + I+  E      L+    +F+ YK  + GK      + G  
Sbjct: 151 TDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRATNEWFRIYKIPD-GKPENQFAFSGEA 209

Query: 160 --VNSAHKIILEAVKR 173
                A  II E    
Sbjct: 210 KNKKYALDIIKETHDS 225


>3ejj_A Colony stimulating factor-1; growth factor-receptor complex,
           receptor tyrosine kinase, cytokine, 4-helix bundle,
           ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 1hmc_A
          Length = 155

 Score = 30.6 bits (69), Expect = 0.18
 Identities = 10/41 (24%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 122 IQSYEDVPNAYLQKVEHFFKHYKDLEDGKWAKLDGWEGVNS 162
           ++++ + P   L+K+++FF   K+L +  W         NS
Sbjct: 103 VRTFHETPLQLLEKIKNFFNETKNLLEKDWNIFT-KNCNNS 142


>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, infectious
           diseases, center for structural genomics of infectious
           diseases; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1
           biovar eltor} PDB: 3n2i_A*
          Length = 236

 Score = 30.0 bits (67), Expect = 0.33
 Identities = 7/55 (12%), Positives = 21/55 (38%), Gaps = 5/55 (9%)

Query: 125 YEDVPNAYLQKVEHFFKHYKDL--EDGKWAKLDGWEGVNSAHKIILEAVKRGIKE 177
            E +  ++ ++     + Y +L   D     +D  + +      I  A++  + +
Sbjct: 181 IEKMDISFFERA---RERYLELANSDDSVVMIDAAQSIEQVTADIRRALQDWLSQ 232


>2ccj_A DTMP kinase, thymidylate kinase; transferase, nucleotide
           biosynthesis, TMP-binding, ATP-binding; HET: TMP; 1.7A
           {Staphylococcus aureus} PDB: 2cck_A 2ccg_A*
          Length = 205

 Score = 28.4 bits (62), Expect = 0.93
 Identities = 4/65 (6%), Positives = 24/65 (36%)

Query: 113 KNITSLYDSIQSYEDVPNAYLQKVEHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEAVK 172
           + I          +     + +KV   ++     E  ++  ++  + + +  +   + + 
Sbjct: 140 ERIIKNSRDQNRLDQEDLKFHEKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTII 199

Query: 173 RGIKE 177
           + +++
Sbjct: 200 KYLEK 204


>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase; HET:
           T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB:
           5tmp_A*
          Length = 213

 Score = 28.4 bits (62), Expect = 0.97
 Identities = 7/55 (12%), Positives = 16/55 (29%), Gaps = 1/55 (1%)

Query: 123 QSYEDVPNAYLQKVEHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEAVKRGIKE 177
              E     +  +    +      +D     +D  + + +    I   V   +KE
Sbjct: 157 DRIEQESFDFFNRTRARYLELAA-QDKSIHTIDATQPLEAVMDAIRTTVTHWVKE 210


>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, cytoplasm,
           hydrolase, nucleotide-B protease, serine protease,
           stress response; HET: ADP; 3.40A {Bacillus subtilis}
           PDB: 1x37_A
          Length = 543

 Score = 28.1 bits (62), Expect = 1.0
 Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 4/49 (8%)

Query: 101 GGIDEKILAVPSKNITSL---YDSIQSYEDVPNAYLQKVE-HFFKHYKD 145
           GG+ EK L      +T++    D+ +  ED+P +  + +      H  +
Sbjct: 476 GGLKEKALGAHRAGLTTIIAPKDNEKDIEDIPESVREGLTFILASHLDE 524


>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB
           domain, apoptosis, cytoplasm, DNA-binding, hydrolase,
           metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A
          Length = 390

 Score = 28.3 bits (63), Expect = 1.1
 Identities = 7/57 (12%), Positives = 21/57 (36%), Gaps = 4/57 (7%)

Query: 96  KMEDDGGIDEKILAVPSKNITSLYDSIQSYEDVPNAYLQKVEHFFKHYKDLEDGKWA 152
            ++        ++     +  +L   I   +D    Y + V+H +K +++  +    
Sbjct: 333 PVQGWDHGTTHLINAAKLDEANLPKEINLVDD----YFELVQHEYKKWQENSEQGRR 385


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 27.6 bits (61), Expect = 1.8
 Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 20/62 (32%)

Query: 82  LPGSVISTRPIGVMKMED--DGGIDEKILAVPSK--NITSL-YDSIQSYEDVPNAYLQKV 136
           LP S++          ED  +    E    VPS   +I++L  + +Q Y +  N++L   
Sbjct: 319 LPPSIL----------EDSLENN--E---GVPSPMLSISNLTQEQVQDYVNKTNSHLPAG 363

Query: 137 EH 138
           + 
Sbjct: 364 KQ 365



 Score = 26.8 bits (59), Expect = 2.9
 Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 19/65 (29%)

Query: 85  SVISTRPIGVMKMEDDGGIDEKILAVPSKNITSLYDSIQSYEDVPNAYLQKVEHFFKHYK 144
              STRP+  +     G + E +L VP    T+ +           A   + E F K   
Sbjct: 2   DAYSTRPL-TLS---HGSL-EHVLLVP----TASF---------FIASQLQ-EQFNKILP 42

Query: 145 DLEDG 149
           +  +G
Sbjct: 43  EPTEG 47


>1uzx_A VPS23, STP22, vacuolar protein sorting-associated protein VPS23;
           transport protein, transport protein/complex, UEV, E2
           variant, ubquitin, ESCRT-I; HET: MES; 1.85A
           {Saccharomyces cerevisiae} SCOP: d.20.1.2
          Length = 169

 Score = 27.2 bits (60), Expect = 2.3
 Identities = 6/39 (15%), Positives = 13/39 (33%)

Query: 108 LAVPSKNITSLYDSIQSYEDVPNAYLQKVEHFFKHYKDL 146
           ++VP   +  L+  IQ   +              ++  L
Sbjct: 15  ISVPEAVVNWLFKVIQPIYNDGRTTFHDSLALLDNFHSL 53


>1nn5_A Similar to deoxythymidylate kinase (thymidylate kinase); P-loop,
           D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens}
           SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A*
           1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A*
           1e2f_A* 1nn3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A*
           1e9f_A*
          Length = 215

 Score = 26.3 bits (57), Expect = 3.5
 Identities = 9/53 (16%), Positives = 19/53 (35%), Gaps = 2/53 (3%)

Query: 125 YEDVPNAYLQKVEHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEAVKRGIKE 177
           YE+   A+ ++    F          W  +D  + + + H+ I    +  I  
Sbjct: 154 YENG--AFQERALRCFHQLMKDTTLNWKMVDASKSIEAVHEDIRVLSEDAIAT 204


>1f6f_A Placental lactogen; 4-helical bundle, alpha helical bundle, ternary
           complex, FN III domains, beta sheet domains,
           cytokine-receptor complex; 2.30A {Ovis aries} SCOP:
           a.26.1.1
          Length = 199

 Score = 26.0 bits (57), Expect = 4.8
 Identities = 7/32 (21%), Positives = 12/32 (37%)

Query: 118 LYDSIQSYEDVPNAYLQKVEHFFKHYKDLEDG 149
               + + +    A L K +   +  K L DG
Sbjct: 100 AVTELANSKGTSPALLTKAQEIKEKAKVLVDG 131


>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem
          I; photosynthesis, electron transfer, membrane
          proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC
          UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 2o01_3*
          Length = 276

 Score = 25.8 bits (56), Expect = 6.0
 Identities = 9/17 (52%), Positives = 10/17 (58%)

Query: 53 YPGNYGFIPNTLSDDGD 69
           PG+YGF P  LSD   
Sbjct: 73 LPGDYGFDPLGLSDPEG 89


>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide
           biosynthesis, nucleotide-binding, transferase,
           structural genomics, NPPSFA; HET: ADP TYD; 2.10A
           {Thermotoga maritima} PDB: 3hjn_A*
          Length = 197

 Score = 25.7 bits (55), Expect = 6.4
 Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 2/66 (3%)

Query: 111 PSKNITSLYDSIQSYEDVPNAYLQKVEHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEA 170
             +        +  +E     +L++V   +         +   LDG   +   H+ ++  
Sbjct: 131 DVETALKRKGELNRFEK--REFLERVREGYLVLAREHPERIVVLDGKRSIEEIHRDVVRE 188

Query: 171 VKRGIK 176
           VKR  K
Sbjct: 189 VKRRWK 194


>2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel,
           alpha-amylase-family, hydrolase; 2.11A {Bacillus
           subtilis} PDB: 2e8z_A* 2e9b_A*
          Length = 718

 Score = 25.3 bits (54), Expect = 7.2
 Identities = 24/182 (13%), Positives = 50/182 (27%), Gaps = 27/182 (14%)

Query: 19  VFIEISLGGYPIKYEMDKKSGVLVVDRFISTPMLYPGNYGFI--PNTLSDDGD------P 70
           V +   L GY   + +   S  +      +  +   G  G +  P+ +           P
Sbjct: 153 VTVTGDLHGYEYLFCICNNSEWMETVDQYAKAVTVNGEKGVVLRPDQMKWTAPLKPFSHP 212

Query: 71  VDVIMY-----------SSEPILPGSVISTRPIGVMKMEDDGGIDEKI-----LAVPSKN 114
           VD ++Y           +S  I  G  ++         +   G    +     L V    
Sbjct: 213 VDAVIYETHLRDFSIHENSGMINKGKYLALTE---TDTQTANGSSSGLAYVKELGVTHVE 269

Query: 115 ITSLYDSIQSYEDVPNAYLQKVEHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEAVKRG 174
           +  + D     E+ P        +    +           D         ++I    + G
Sbjct: 270 LLPVNDFAGVDEEKPLDAYNWGYNPLHFFAPEGSYASNPHDPQTRKTELKQMINTLHQHG 329

Query: 175 IK 176
           ++
Sbjct: 330 LR 331


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 25.3 bits (54), Expect = 7.9
 Identities = 8/38 (21%), Positives = 15/38 (39%), Gaps = 15/38 (39%)

Query: 133 LQKVEHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEA 170
           L+K++   K Y D               +SA  + ++A
Sbjct: 22  LKKLQASLKLYAD---------------DSAPALAIKA 44


>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding,
           nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A
           {Thermococcus onnurineus}
          Length = 604

 Score = 25.1 bits (54), Expect = 9.0
 Identities = 7/56 (12%), Positives = 15/56 (26%), Gaps = 19/56 (33%)

Query: 101 GGIDEKILA----------VPSKNITSLYDSIQSYEDVPNAYLQKVE-HFFKHYKD 145
           GG    I A          +P  N   +         +     +K++    +   +
Sbjct: 524 GGATPAIEAAIEAGIKMVIIPKSNEKDV--------FLSKDKAEKIQIFPVETIDE 571


>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, ,
           isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces
           cerevisiae} SCOP: b.30.5.4 c.2.1.2
          Length = 699

 Score = 24.9 bits (54), Expect = 9.5
 Identities = 6/26 (23%), Positives = 15/26 (57%)

Query: 108 LAVPSKNITSLYDSIQSYEDVPNAYL 133
           L V  +++   Y++ + Y +  +AY+
Sbjct: 398 LKVNGQSVVLGYENEEGYLNPDSAYI 423


>1r9d_A Glycerol dehydratase; radical SAM, lyase; 1.80A {Clostridium
           butyricum} SCOP: c.7.1.1 PDB: 1r8w_A 1r9e_A
          Length = 787

 Score = 25.2 bits (55), Expect = 9.8
 Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 9/71 (12%)

Query: 79  EPILPGSVISTRPIG------VMKMEDDGGIDEKILAVPSKNITSLYDSIQSYEDVPNAY 132
           EP  PG               ++++  + G D+     P    T  ++ ++S+++   AY
Sbjct: 435 EPQKPGKTEGWHDSAFFNLARIVELTINSGFDKNKQIGP---KTQNFEEMKSFDEFMKAY 491

Query: 133 LQKVEHFFKHY 143
             ++E+F KH 
Sbjct: 492 KAQMEYFVKHM 502


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.315    0.138    0.403 

Gapped
Lambda     K      H
   0.267   0.0449    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,600,701
Number of extensions: 74658
Number of successful extensions: 206
Number of sequences better than 10.0: 1
Number of HSP's gapped: 194
Number of HSP's successfully gapped: 38
Length of query: 177
Length of database: 5,693,230
Length adjustment: 86
Effective length of query: 91
Effective length of database: 3,608,246
Effective search space: 328350386
Effective search space used: 328350386
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.9 bits)