RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780232|ref|YP_003064645.1| inorganic pyrophosphatase [Candidatus Liberibacter asiaticus str. psy62] (177 letters) >d1i40a_ b.40.5.1 (A:) Inorganic pyrophosphatase {Escherichia coli [TaxId: 562]} Length = 175 Score = 189 bits (481), Expect = 1e-49 Identities = 83/170 (48%), Positives = 113/170 (66%) Query: 4 LNEISLGSNSPIDVNVFIEISLGGYPIKYEMDKKSGVLVVDRFISTPMLYPGNYGFIPNT 63 L + G + P D+ V IEI PIKYE+DK+SG L VDRF+ST M YP NYG+I +T Sbjct: 2 LLNVPAGKDLPEDIYVVIEIPANADPIKYEIDKESGALFVDRFMSTAMFYPCNYGYINHT 61 Query: 64 LSDDGDPVDVIMYSSEPILPGSVISTRPIGVMKMEDDGGIDEKILAVPSKNITSLYDSIQ 123 LS DGDPVDV++ + P+ PGSV RP+GV+KM D+ G D K++AVP ++ YD I+ Sbjct: 62 LSLDGDPVDVLVPTPYPLQPGSVTRCRPVGVLKMTDEAGEDAKLVAVPHSKLSKEYDHIK 121 Query: 124 SYEDVPNAYLQKVEHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEAVKR 173 D+P ++ HFF+HYKDLE GKW K++GWE +A I+ + +R Sbjct: 122 DVNDLPELLKAQIAHFFEHYKDLEKGKWVKVEGWENAEAAKAEIVASFER 171 >d1qeza_ b.40.5.1 (A:) Inorganic pyrophosphatase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 170 Score = 182 bits (462), Expect = 2e-47 Identities = 79/168 (47%), Positives = 108/168 (64%), Gaps = 1/168 (0%) Query: 6 EISLGSNSPIDVNVFIEISLGGYPIKYEMDKKSGVLVVDRFISTPMLYPGNYGFIPNTLS 65 ++S G N+P VNV +EI G IKYE D + GV+ VDR + T M YP NYGFIP TL Sbjct: 1 KLSPGKNAPDVVNVLVEIPQGS-NIKYEYDDEEGVIKVDRVLYTSMNYPFNYGFIPGTLE 59 Query: 66 DDGDPVDVIMYSSEPILPGSVISTRPIGVMKMEDDGGIDEKILAVPSKNITSLYDSIQSY 125 +DGDP+DV++ ++ + PGSVI RPIG++ M+D+ G D KI+AVP + +I+ Sbjct: 60 EDGDPLDVLVITNYQLYPGSVIEVRPIGILYMKDEEGEDAKIVAVPKDKTDPSFSNIKDI 119 Query: 126 EDVPNAYLQKVEHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEAVKR 173 D+P A K+ HFF+HYK+LE GK+ K+ GW A I A+KR Sbjct: 120 NDLPQATKNKIVHFFEHYKELEPGKYVKISGWGSATEAKNRIQLAIKR 167 >d2prda_ b.40.5.1 (A:) Inorganic pyrophosphatase {Thermus thermophilus [TaxId: 274]} Length = 174 Score = 175 bits (445), Expect = 2e-45 Identities = 66/172 (38%), Positives = 103/172 (59%), Gaps = 5/172 (2%) Query: 4 LNEISLGSNSPIDVNVFIEISLGGYPIKYEMDKKSGVLVVDRFISTPMLYPGNYGFIPNT 63 L + +G +P V++ IE+ G KYE D G + +DR + YPG+YGFIP+T Sbjct: 3 LKSLPVGDKAPEVVHMVIEVPRGSGN-KYEYDPDLGAIKLDRVLPGAQFYPGDYGFIPST 61 Query: 64 LSDDGDPVDVIMYSSEPILPGSVISTRPIGVMKMEDDGGIDEKILAVPSKNITSLYDSIQ 123 L++DGDP+D ++ S+ P+LPG V+ R +G++ MED+ G D K++ V +++ D IQ Sbjct: 62 LAEDGDPLDGLVLSTYPLLPGVVVEVRVVGLLLMEDEKGGDAKVIGVVAED--QRLDHIQ 119 Query: 124 SYEDVPNAYLQKVEHFFKHYKDLE--DGKWAKLDGWEGVNSAHKIILEAVKR 173 DVP Q+++HFF+ YK LE GKW K+ GW +A + + + R Sbjct: 120 DIGDVPEGVKQEIQHFFETYKALEAKKGKWVKVTGWRDRKAALEEVRACIAR 171 >d1twla_ b.40.5.1 (A:) Inorganic pyrophosphatase {Pyrococcus furiosus [TaxId: 2261]} Length = 173 Score = 173 bits (439), Expect = 9e-45 Identities = 69/173 (39%), Positives = 107/173 (61%), Gaps = 4/173 (2%) Query: 5 NEISLGSNSPIDVNVFIEISLGGYPIKYEMDKKSGVLVVDRFISTPMLYPGNYGFIPNTL 64 +++ G + P V IEI G KYE+DKK+G+L +DR + +P YP +YG IP T Sbjct: 4 HDLEPGPDVPEVVYAIIEIPKGS-RNKYELDKKTGLLKLDRVLYSPFFYPVDYGIIPRTW 62 Query: 65 SDDGDPVDVIMYSSEPILPGSVISTRPIGVMKMEDDGGIDEKILAVPSKNITSLYDSIQS 124 +D DP D+++ EP+ P ++I RPIG+ KM D G D K+LAVP ++ + + Sbjct: 63 YEDDDPFDIMVIMREPVYPLTIIEARPIGLFKMIDSGDKDYKVLAVPVED--PYFKDWKD 120 Query: 125 YEDVPNAYLQKVEHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEAVKRGIKE 177 +DVP A+L ++ HFFK YK+L+ GK ++GWEG +A + IL A++ ++ Sbjct: 121 IDDVPKAFLDEIAHFFKRYKELQ-GKEIIVEGWEGAEAAKREILRAIEMYKEK 172 >d1e9ga_ b.40.5.1 (A:) Inorganic pyrophosphatase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 284 Score = 136 bits (344), Expect = 8e-34 Identities = 46/198 (23%), Positives = 73/198 (36%), Gaps = 31/198 (15%) Query: 5 NEISLGSNSPID-VNVFIEISLGGYPIKYEMDK-----------KSGVLVVDRFISTPML 52 ++I L ++ + N+ +EI K E+ K K G L R Sbjct: 30 HDIPLYADKENNIFNMVVEIPRWTN-AKLEITKEETLNPIIQDTKKGKLRFVRNCFPHHG 88 Query: 53 YPGNYGFIPNTLSD------------DGDPVDVIMYSSEPILPGSVISTRPIGVMKMEDD 100 Y NYG P T D D DP+DV+ G V + +G+M + D+ Sbjct: 89 YIHNYGAFPQTWEDPNVSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDE 148 Query: 101 GGIDEKILAVPSKN-ITSLYDSIQSYEDVPNAYLQKVEHFFKHYKDLEDGKWAKLDGWEG 159 G D K++A+ + + + I+ E L+ +F+ YK + GK + G Sbjct: 149 GETDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRATNEWFRIYKIPD-GKPENQFAFSG 207 Query: 160 ----VNSAHKIILEAVKR 173 A II E Sbjct: 208 EAKNKKYALDIIKETHDS 225 >gi|3308969|dbj|BAA31557.1|(36-183:257) macrophage-colony stimulating factor alpha [Bos taurus] gi|33114043|gb|AAP94638.1| colony-stimulating factor-1 splice variant [Bos taurus] E=5e-72 s/c=1.84 id=87% cov=101% Length = 148 Score = 29.4 bits (66), Expect = 0.16 Identities = 7/34 (20%), Positives = 17/34 (50%) Query: 122 IQSYEDVPNAYLQKVEHFFKHYKDLEDGKWAKLD 155 ++++ + P L+K+++ F K+L W Sbjct: 100 VRTFHETPLQLLEKIKNVFNETKNLLKKDWNIFS 133 >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} Length = 210 Score = 28.7 bits (63), Expect = 0.25 Identities = 7/59 (11%), Positives = 17/59 (28%), Gaps = 1/59 (1%) Query: 119 YDSIQSYEDVPNAYLQKVEHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEAVKRGIKE 177 + E + + + +D +D + + + I V +KE Sbjct: 152 RGELDRIEQESFDFFNRTRARYLELAA-QDKSIHTIDATQPLEAVMDAIRTTVTHWVKE 209 >d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 152 Score = 28.0 bits (62), Expect = 0.52 Identities = 6/39 (15%), Positives = 12/39 (30%) Query: 109 AVPSKNITSLYDSIQSYEDVPNAYLQKVEHFFKHYKDLE 147 +VP + L+ IQ + ++ L Sbjct: 1 SVPEAVVNWLFKVIQPIYNDGRTTFHDSLALLDNFHSLR 39 >d1z45a1 b.30.5.4 (A:358-699) Galactose mutarotase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 Score = 27.5 bits (60), Expect = 0.72 Identities = 6/26 (23%), Positives = 15/26 (57%) Query: 108 LAVPSKNITSLYDSIQSYEDVPNAYL 133 L V +++ Y++ + Y + +AY+ Sbjct: 41 LKVNGQSVVLGYENEEGYLNPDSAYI 66 >d1r9da_ c.7.1.1 (A:) Glycerol dehydratase DhaB1 {Clostridium butyricum [TaxId: 1492]} Length = 786 Score = 26.0 bits (57), Expect = 1.9 Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 9/71 (12%) Query: 79 EPILPGSVISTRPIG------VMKMEDDGGIDEKILAVPSKNITSLYDSIQSYEDVPNAY 132 EP PG ++++ + G D+ P T ++ ++S+++ AY Sbjct: 434 EPQKPGKTEGWHDSAFFNLARIVELTINSGFDKNKQIGP---KTQNFEEMKSFDEFMKAY 490 Query: 133 LQKVEHFFKHY 143 ++E+F KH Sbjct: 491 KAQMEYFVKHM 501 >d1rw5a1 a.26.1.1 (A:1-199) Prolactin (placental lactogen) {Human (Homo sapiens) [TaxId: 9606]} Length = 199 Score = 25.6 bits (56), Expect = 2.2 Identities = 8/33 (24%), Positives = 14/33 (42%) Query: 117 SLYDSIQSYEDVPNAYLQKVEHFFKHYKDLEDG 149 L ++ ++ P A L K + K L +G Sbjct: 97 HLVTEVRGMQEAPEAILSKAVEIEEQTKRLLEG 129 >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 209 Score = 24.9 bits (53), Expect = 3.7 Identities = 7/47 (14%), Positives = 16/47 (34%) Query: 131 AYLQKVEHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEAVKRGIKE 177 A+ ++ F W +D + + + H+ I + I Sbjct: 152 AFQERALRCFHQLMKDTTLNWKMVDASKSIEAVHEDIRVLSEDAIAT 198 >d1f6fa_ a.26.1.1 (A:) Prolactin (placental lactogen) {Sheep (Ovis aries) [TaxId: 9940]} Length = 197 Score = 24.9 bits (54), Expect = 4.7 Identities = 7/32 (21%), Positives = 12/32 (37%) Query: 118 LYDSIQSYEDVPNAYLQKVEHFFKHYKDLEDG 149 + + + A L K + + K L DG Sbjct: 100 AVTELANSKGTSPALLTKAQEIKEKAKVLVDG 131 >d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]} Length = 173 Score = 24.5 bits (52), Expect = 6.2 Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 3/51 (5%) Query: 11 SNSPIDVNVFIEISLGGYP---IKYEMDKKSGVLVVDRFISTPMLYPGNYG 58 ++SP++ VF ++S+GG +K E+ + F G Sbjct: 1 NSSPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDG 51 >d1h16a_ c.7.1.1 (A:) Pyruvate formate-lyase, PFL {Escherichia coli [TaxId: 562]} Length = 759 Score = 24.0 bits (52), Expect = 7.0 Identities = 9/43 (20%), Positives = 18/43 (41%) Query: 101 GGIDEKILAVPSKNITSLYDSIQSYEDVPNAYLQKVEHFFKHY 143 GG+DEK+ + + +Y++V ++ K Y Sbjct: 448 GGVDEKLKMQVGPKSEPIKGDVLNYDEVMERMDHFMDWLAKQY 490 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.315 0.138 0.403 Gapped Lambda K H 0.267 0.0449 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 692,166 Number of extensions: 32939 Number of successful extensions: 80 Number of sequences better than 10.0: 1 Number of HSP's gapped: 71 Number of HSP's successfully gapped: 18 Length of query: 177 Length of database: 2,407,596 Length adjustment: 80 Effective length of query: 97 Effective length of database: 1,309,196 Effective search space: 126992012 Effective search space used: 126992012 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 50 (23.7 bits)