RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780232|ref|YP_003064645.1| inorganic pyrophosphatase
[Candidatus Liberibacter asiaticus str. psy62]
(177 letters)
>d1i40a_ b.40.5.1 (A:) Inorganic pyrophosphatase {Escherichia coli
[TaxId: 562]}
Length = 175
Score = 189 bits (481), Expect = 1e-49
Identities = 83/170 (48%), Positives = 113/170 (66%)
Query: 4 LNEISLGSNSPIDVNVFIEISLGGYPIKYEMDKKSGVLVVDRFISTPMLYPGNYGFIPNT 63
L + G + P D+ V IEI PIKYE+DK+SG L VDRF+ST M YP NYG+I +T
Sbjct: 2 LLNVPAGKDLPEDIYVVIEIPANADPIKYEIDKESGALFVDRFMSTAMFYPCNYGYINHT 61
Query: 64 LSDDGDPVDVIMYSSEPILPGSVISTRPIGVMKMEDDGGIDEKILAVPSKNITSLYDSIQ 123
LS DGDPVDV++ + P+ PGSV RP+GV+KM D+ G D K++AVP ++ YD I+
Sbjct: 62 LSLDGDPVDVLVPTPYPLQPGSVTRCRPVGVLKMTDEAGEDAKLVAVPHSKLSKEYDHIK 121
Query: 124 SYEDVPNAYLQKVEHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEAVKR 173
D+P ++ HFF+HYKDLE GKW K++GWE +A I+ + +R
Sbjct: 122 DVNDLPELLKAQIAHFFEHYKDLEKGKWVKVEGWENAEAAKAEIVASFER 171
>d1qeza_ b.40.5.1 (A:) Inorganic pyrophosphatase {Archaeon
Sulfolobus acidocaldarius [TaxId: 2285]}
Length = 170
Score = 182 bits (462), Expect = 2e-47
Identities = 79/168 (47%), Positives = 108/168 (64%), Gaps = 1/168 (0%)
Query: 6 EISLGSNSPIDVNVFIEISLGGYPIKYEMDKKSGVLVVDRFISTPMLYPGNYGFIPNTLS 65
++S G N+P VNV +EI G IKYE D + GV+ VDR + T M YP NYGFIP TL
Sbjct: 1 KLSPGKNAPDVVNVLVEIPQGS-NIKYEYDDEEGVIKVDRVLYTSMNYPFNYGFIPGTLE 59
Query: 66 DDGDPVDVIMYSSEPILPGSVISTRPIGVMKMEDDGGIDEKILAVPSKNITSLYDSIQSY 125
+DGDP+DV++ ++ + PGSVI RPIG++ M+D+ G D KI+AVP + +I+
Sbjct: 60 EDGDPLDVLVITNYQLYPGSVIEVRPIGILYMKDEEGEDAKIVAVPKDKTDPSFSNIKDI 119
Query: 126 EDVPNAYLQKVEHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEAVKR 173
D+P A K+ HFF+HYK+LE GK+ K+ GW A I A+KR
Sbjct: 120 NDLPQATKNKIVHFFEHYKELEPGKYVKISGWGSATEAKNRIQLAIKR 167
>d2prda_ b.40.5.1 (A:) Inorganic pyrophosphatase {Thermus
thermophilus [TaxId: 274]}
Length = 174
Score = 175 bits (445), Expect = 2e-45
Identities = 66/172 (38%), Positives = 103/172 (59%), Gaps = 5/172 (2%)
Query: 4 LNEISLGSNSPIDVNVFIEISLGGYPIKYEMDKKSGVLVVDRFISTPMLYPGNYGFIPNT 63
L + +G +P V++ IE+ G KYE D G + +DR + YPG+YGFIP+T
Sbjct: 3 LKSLPVGDKAPEVVHMVIEVPRGSGN-KYEYDPDLGAIKLDRVLPGAQFYPGDYGFIPST 61
Query: 64 LSDDGDPVDVIMYSSEPILPGSVISTRPIGVMKMEDDGGIDEKILAVPSKNITSLYDSIQ 123
L++DGDP+D ++ S+ P+LPG V+ R +G++ MED+ G D K++ V +++ D IQ
Sbjct: 62 LAEDGDPLDGLVLSTYPLLPGVVVEVRVVGLLLMEDEKGGDAKVIGVVAED--QRLDHIQ 119
Query: 124 SYEDVPNAYLQKVEHFFKHYKDLE--DGKWAKLDGWEGVNSAHKIILEAVKR 173
DVP Q+++HFF+ YK LE GKW K+ GW +A + + + R
Sbjct: 120 DIGDVPEGVKQEIQHFFETYKALEAKKGKWVKVTGWRDRKAALEEVRACIAR 171
>d1twla_ b.40.5.1 (A:) Inorganic pyrophosphatase {Pyrococcus
furiosus [TaxId: 2261]}
Length = 173
Score = 173 bits (439), Expect = 9e-45
Identities = 69/173 (39%), Positives = 107/173 (61%), Gaps = 4/173 (2%)
Query: 5 NEISLGSNSPIDVNVFIEISLGGYPIKYEMDKKSGVLVVDRFISTPMLYPGNYGFIPNTL 64
+++ G + P V IEI G KYE+DKK+G+L +DR + +P YP +YG IP T
Sbjct: 4 HDLEPGPDVPEVVYAIIEIPKGS-RNKYELDKKTGLLKLDRVLYSPFFYPVDYGIIPRTW 62
Query: 65 SDDGDPVDVIMYSSEPILPGSVISTRPIGVMKMEDDGGIDEKILAVPSKNITSLYDSIQS 124
+D DP D+++ EP+ P ++I RPIG+ KM D G D K+LAVP ++ + +
Sbjct: 63 YEDDDPFDIMVIMREPVYPLTIIEARPIGLFKMIDSGDKDYKVLAVPVED--PYFKDWKD 120
Query: 125 YEDVPNAYLQKVEHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEAVKRGIKE 177
+DVP A+L ++ HFFK YK+L+ GK ++GWEG +A + IL A++ ++
Sbjct: 121 IDDVPKAFLDEIAHFFKRYKELQ-GKEIIVEGWEGAEAAKREILRAIEMYKEK 172
>d1e9ga_ b.40.5.1 (A:) Inorganic pyrophosphatase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 284
Score = 136 bits (344), Expect = 8e-34
Identities = 46/198 (23%), Positives = 73/198 (36%), Gaps = 31/198 (15%)
Query: 5 NEISLGSNSPID-VNVFIEISLGGYPIKYEMDK-----------KSGVLVVDRFISTPML 52
++I L ++ + N+ +EI K E+ K K G L R
Sbjct: 30 HDIPLYADKENNIFNMVVEIPRWTN-AKLEITKEETLNPIIQDTKKGKLRFVRNCFPHHG 88
Query: 53 YPGNYGFIPNTLSD------------DGDPVDVIMYSSEPILPGSVISTRPIGVMKMEDD 100
Y NYG P T D D DP+DV+ G V + +G+M + D+
Sbjct: 89 YIHNYGAFPQTWEDPNVSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDE 148
Query: 101 GGIDEKILAVPSKN-ITSLYDSIQSYEDVPNAYLQKVEHFFKHYKDLEDGKWAKLDGWEG 159
G D K++A+ + + + I+ E L+ +F+ YK + GK + G
Sbjct: 149 GETDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRATNEWFRIYKIPD-GKPENQFAFSG 207
Query: 160 ----VNSAHKIILEAVKR 173
A II E
Sbjct: 208 EAKNKKYALDIIKETHDS 225
>gi|3308969|dbj|BAA31557.1|(36-183:257) macrophage-colony
stimulating factor alpha [Bos taurus]
gi|33114043|gb|AAP94638.1| colony-stimulating factor-1
splice variant [Bos taurus] E=5e-72 s/c=1.84 id=87%
cov=101%
Length = 148
Score = 29.4 bits (66), Expect = 0.16
Identities = 7/34 (20%), Positives = 17/34 (50%)
Query: 122 IQSYEDVPNAYLQKVEHFFKHYKDLEDGKWAKLD 155
++++ + P L+K+++ F K+L W
Sbjct: 100 VRTFHETPLQLLEKIKNVFNETKNLLKKDWNIFS 133
>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId:
562]}
Length = 210
Score = 28.7 bits (63), Expect = 0.25
Identities = 7/59 (11%), Positives = 17/59 (28%), Gaps = 1/59 (1%)
Query: 119 YDSIQSYEDVPNAYLQKVEHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEAVKRGIKE 177
+ E + + + +D +D + + + I V +KE
Sbjct: 152 RGELDRIEQESFDFFNRTRARYLELAA-QDKSIHTIDATQPLEAVMDAIRTTVTHWVKE 209
>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 152
Score = 28.0 bits (62), Expect = 0.52
Identities = 6/39 (15%), Positives = 12/39 (30%)
Query: 109 AVPSKNITSLYDSIQSYEDVPNAYLQKVEHFFKHYKDLE 147
+VP + L+ IQ + ++ L
Sbjct: 1 SVPEAVVNWLFKVIQPIYNDGRTTFHDSLALLDNFHSLR 39
>d1z45a1 b.30.5.4 (A:358-699) Galactose mutarotase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 27.5 bits (60), Expect = 0.72
Identities = 6/26 (23%), Positives = 15/26 (57%)
Query: 108 LAVPSKNITSLYDSIQSYEDVPNAYL 133
L V +++ Y++ + Y + +AY+
Sbjct: 41 LKVNGQSVVLGYENEEGYLNPDSAYI 66
>d1r9da_ c.7.1.1 (A:) Glycerol dehydratase DhaB1 {Clostridium
butyricum [TaxId: 1492]}
Length = 786
Score = 26.0 bits (57), Expect = 1.9
Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 9/71 (12%)
Query: 79 EPILPGSVISTRPIG------VMKMEDDGGIDEKILAVPSKNITSLYDSIQSYEDVPNAY 132
EP PG ++++ + G D+ P T ++ ++S+++ AY
Sbjct: 434 EPQKPGKTEGWHDSAFFNLARIVELTINSGFDKNKQIGP---KTQNFEEMKSFDEFMKAY 490
Query: 133 LQKVEHFFKHY 143
++E+F KH
Sbjct: 491 KAQMEYFVKHM 501
>d1rw5a1 a.26.1.1 (A:1-199) Prolactin (placental lactogen) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 199
Score = 25.6 bits (56), Expect = 2.2
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 117 SLYDSIQSYEDVPNAYLQKVEHFFKHYKDLEDG 149
L ++ ++ P A L K + K L +G
Sbjct: 97 HLVTEVRGMQEAPEAILSKAVEIEEQTKRLLEG 129
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 209
Score = 24.9 bits (53), Expect = 3.7
Identities = 7/47 (14%), Positives = 16/47 (34%)
Query: 131 AYLQKVEHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEAVKRGIKE 177
A+ ++ F W +D + + + H+ I + I
Sbjct: 152 AFQERALRCFHQLMKDTTLNWKMVDASKSIEAVHEDIRVLSEDAIAT 198
>d1f6fa_ a.26.1.1 (A:) Prolactin (placental lactogen) {Sheep (Ovis
aries) [TaxId: 9940]}
Length = 197
Score = 24.9 bits (54), Expect = 4.7
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 118 LYDSIQSYEDVPNAYLQKVEHFFKHYKDLEDG 149
+ + + A L K + + K L DG
Sbjct: 100 AVTELANSKGTSPALLTKAQEIKEKAKVLVDG 131
>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo
sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20
[TaxId: 9606]}
Length = 173
Score = 24.5 bits (52), Expect = 6.2
Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Query: 11 SNSPIDVNVFIEISLGGYP---IKYEMDKKSGVLVVDRFISTPMLYPGNYG 58
++SP++ VF ++S+GG +K E+ + F G
Sbjct: 1 NSSPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDG 51
>d1h16a_ c.7.1.1 (A:) Pyruvate formate-lyase, PFL {Escherichia coli
[TaxId: 562]}
Length = 759
Score = 24.0 bits (52), Expect = 7.0
Identities = 9/43 (20%), Positives = 18/43 (41%)
Query: 101 GGIDEKILAVPSKNITSLYDSIQSYEDVPNAYLQKVEHFFKHY 143
GG+DEK+ + + +Y++V ++ K Y
Sbjct: 448 GGVDEKLKMQVGPKSEPIKGDVLNYDEVMERMDHFMDWLAKQY 490
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.138 0.403
Gapped
Lambda K H
0.267 0.0449 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 692,166
Number of extensions: 32939
Number of successful extensions: 80
Number of sequences better than 10.0: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 18
Length of query: 177
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 97
Effective length of database: 1,309,196
Effective search space: 126992012
Effective search space used: 126992012
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.7 bits)