BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780232|ref|YP_003064645.1| inorganic pyrophosphatase
[Candidatus Liberibacter asiaticus str. psy62]
         (177 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780232|ref|YP_003064645.1| inorganic pyrophosphatase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 177

 Score =  356 bits (913), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 177/177 (100%), Positives = 177/177 (100%)

Query: 1   MVQLNEISLGSNSPIDVNVFIEISLGGYPIKYEMDKKSGVLVVDRFISTPMLYPGNYGFI 60
           MVQLNEISLGSNSPIDVNVFIEISLGGYPIKYEMDKKSGVLVVDRFISTPMLYPGNYGFI
Sbjct: 1   MVQLNEISLGSNSPIDVNVFIEISLGGYPIKYEMDKKSGVLVVDRFISTPMLYPGNYGFI 60

Query: 61  PNTLSDDGDPVDVIMYSSEPILPGSVISTRPIGVMKMEDDGGIDEKILAVPSKNITSLYD 120
           PNTLSDDGDPVDVIMYSSEPILPGSVISTRPIGVMKMEDDGGIDEKILAVPSKNITSLYD
Sbjct: 61  PNTLSDDGDPVDVIMYSSEPILPGSVISTRPIGVMKMEDDGGIDEKILAVPSKNITSLYD 120

Query: 121 SIQSYEDVPNAYLQKVEHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEAVKRGIKE 177
           SIQSYEDVPNAYLQKVEHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEAVKRGIKE
Sbjct: 121 SIQSYEDVPNAYLQKVEHFFKHYKDLEDGKWAKLDGWEGVNSAHKIILEAVKRGIKE 177


>gi|254780321|ref|YP_003064734.1| GTP-binding protein LepA [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 606

 Score = 27.7 bits (60), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 14/89 (15%)

Query: 23  ISLGGYPIKYEMDKKSGVLVVDRFISTPMLYPGNYGF------------IPNTLSDDGDP 70
           I L G   KY++++    ++  + I    LYPG  G             + +T++DD  P
Sbjct: 232 IRLMGTNAKYQVERIG--ILTPKMIDIEALYPGEIGVMIASIKEVSHTRVGDTITDDSSP 289

Query: 71  VDVIMYSSEPILPGSVISTRPIGVMKMED 99
               +   +PI P       P+   + E+
Sbjct: 290 TTSALPGFKPIQPVVFCGLFPVDATQFEN 318


>gi|254781028|ref|YP_003065441.1| putative Mg2+ chelatase family protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 87

 Score = 23.5 bits (49), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 10/56 (17%)

Query: 91  PIGVMKMEDDGGIDEKILAVPSKNITSLYDSIQSY----------EDVPNAYLQKV 136
           P+ V  M   G +  +I+ +P K +    + IQS+           ++P+ YLQ +
Sbjct: 17  PVEVQVMVSPGRVGVQIVGLPDKAVIESRERIQSHFIHAGLLFLVNELPSIYLQLI 72


>gi|254780682|ref|YP_003065095.1| hypothetical protein CLIBASIA_02845 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 199

 Score = 22.3 bits (46), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 11/42 (26%), Positives = 21/42 (50%)

Query: 97  MEDDGGIDEKILAVPSKNITSLYDSIQSYEDVPNAYLQKVEH 138
           ++ +  + EK L  P KNI +L D+    +   N  ++ + H
Sbjct: 148 LKPNVCVKEKKLIPPRKNINNLKDTNHRLKIKNNQEIKNIHH 189


>gi|254780605|ref|YP_003065018.1| putative aminopeptidase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 609

 Score = 22.3 bits (46), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 70  PVDVIMYSSEPILPGSVISTRPIGVMKMEDDGGIDEKILAV 110
           P  +   + EP+LPG ++S  P G  +    G   E +L V
Sbjct: 497 PQGISRTNQEPLLPGMILSNEP-GYYRCGAFGIRIENVLCV 536


>gi|254781172|ref|YP_003065585.1| NAD-dependent DNA ligase LigA [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 731

 Score = 21.6 bits (44), Expect = 7.8,   Method: Composition-based stats.
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query: 105 EKILAVPSKNITSLYDSIQSYEDV 128
           E IL     ++T+LYDSI    ++
Sbjct: 525 ENILGFGDVSVTNLYDSINKRRNI 548


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.315    0.138    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 123,992
Number of Sequences: 1233
Number of extensions: 5452
Number of successful extensions: 14
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 12
length of query: 177
length of database: 328,796
effective HSP length: 68
effective length of query: 109
effective length of database: 244,952
effective search space: 26699768
effective search space used: 26699768
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 35 (18.1 bits)