HHsearch alignment for GI: 254780233 and conserved domain: COG0541
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion].
Probab=96.12 E-value=0.052 Score=32.39 Aligned_cols=129 Identities=26% Similarity=0.311 Sum_probs=70.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCC---HHHHHC------CCEEEEEEE----------E---EE
Q ss_conf 4999854689877889999998396142322000003885---779870------960646799----------9---99
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCN---DLEKER------GITILAKVT----------S---IV 78 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~---~~EreR------GITI~a~~~----------~---~~ 78 (624)
T Consensus 102 vImmvGLQGsGKTTt~~KLA~~lkk--~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ak 179 (451)
T COG0541 102 VILMVGLQGSGKTTTAGKLAKYLKK--KGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKAK 179 (451)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHH--CCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHH
T ss_conf 8999815679748689999999997--49945898505678689999999998609853167788997999999999999
Q ss_pred ECCEEEEEECCCCC--CC--CHHHHHHHHHH--HCEEEEEEECCCCCCHHHHHHHHHHHHCCCCE-EEEEECCCCCCCCH
Q ss_conf 89979999728987--54--07999999874--21789999768788647899999999729978-99997543667402
Q gi|254780233|r 79 WNDVRINIVDTPGH--AD--FGGEVERILCM--VESVVVLVDAAEGPMPQTKFVVGKALKIGLRP-IVVVNKVDRSDARA 151 (624)
Q Consensus 79 ~~~~~iNiiDTPGH--~D--F~gEVer~l~~--~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~-IvvINKiDr~~a~~ 151 (624)
T Consensus 180 ~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G---QdA~~~A~aF~e~l~itGvIlTKlDGd-aRG 255 (451)
T COG0541 180 EEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG---QDAVNTAKAFNEALGITGVILTKLDGD-ARG 255 (451)
T ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCC---HHHHHHHHHHHHHCCCCEEEEECCCCC-CCC
T ss_conf 7499889996887330309999999999855398748998764445---678999999866269864999714678-762
Q ss_pred HHHH
Q ss_conf 5689
Q gi|254780233|r 152 DEVI 155 (624)
Q Consensus 152 ~~v~ 155 (624)
T Consensus 256 GaAL 259 (451)
T COG0541 256 GAAL 259 (451)
T ss_pred HHHH
T ss_conf 2888