HHsearch alignment for GI: 254780233 and conserved domain: COG0541

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion].
Probab=96.12  E-value=0.052  Score=32.39  Aligned_cols=129  Identities=26%  Similarity=0.311  Sum_probs=70.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCC---HHHHHC------CCEEEEEEE----------E---EE
Q ss_conf             4999854689877889999998396142322000003885---779870------960646799----------9---99
Q gi|254780233|r   21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCN---DLEKER------GITILAKVT----------S---IV   78 (624)
Q Consensus        21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~---~~EreR------GITI~a~~~----------~---~~   78 (624)
T Consensus       102 vImmvGLQGsGKTTt~~KLA~~lkk--~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ak  179 (451)
T COG0541         102 VILMVGLQGSGKTTTAGKLAKYLKK--KGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKAK  179 (451)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHH--CCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHH
T ss_conf             8999815679748689999999997--49945898505678689999999998609853167788997999999999999


Q ss_pred             ECCEEEEEECCCCC--CC--CHHHHHHHHHH--HCEEEEEEECCCCCCHHHHHHHHHHHHCCCCE-EEEEECCCCCCCCH
Q ss_conf             89979999728987--54--07999999874--21789999768788647899999999729978-99997543667402
Q gi|254780233|r   79 WNDVRINIVDTPGH--AD--FGGEVERILCM--VESVVVLVDAAEGPMPQTKFVVGKALKIGLRP-IVVVNKVDRSDARA  151 (624)
Q Consensus        79 ~~~~~iNiiDTPGH--~D--F~gEVer~l~~--~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~-IvvINKiDr~~a~~  151 (624)
T Consensus       180 ~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G---QdA~~~A~aF~e~l~itGvIlTKlDGd-aRG  255 (451)
T COG0541         180 EEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG---QDAVNTAKAFNEALGITGVILTKLDGD-ARG  255 (451)
T ss_pred             HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCC---HHHHHHHHHHHHHCCCCEEEEECCCCC-CCC
T ss_conf             7499889996887330309999999999855398748998764445---678999999866269864999714678-762


Q ss_pred             HHHH
Q ss_conf             5689
Q gi|254780233|r  152 DEVI  155 (624)
Q Consensus       152 ~~v~  155 (624)
T Consensus       256 GaAL  259 (451)
T COG0541         256 GAAL  259 (451)
T ss_pred             HHHH
T ss_conf             2888