HHsearch alignment for GI: 254780233 and conserved domain: COG3523
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport].
Probab=91.15 E-value=0.66 Score=25.14 Aligned_cols=110 Identities=20% Similarity=0.228 Sum_probs=61.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEE-EEEEEEEECCEEEEEECCCCC------CC
Q ss_conf 99985468987788999999839614232200000388577987096064-679999989979999728987------54
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITIL-AKVTSIVWNDVRINIVDTPGH------AD 94 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~-a~~~~~~~~~~~iNiiDTPGH------~D 94 (624)
T Consensus 128 y~viG~pgsGKTtal----~~sgl~Fpl~~----------~~~~~~~~~~gT~~cd-wwf~deaVlIDtaGry~~q~s~~ 192 (1188)
T COG3523 128 YMVIGPPGSGKTTAL----LNSGLQFPLAE----------QMGALGLAGPGTRNCD-WWFTDEAVLIDTAGRYITQDSAD 192 (1188)
T ss_pred EEEECCCCCCCCHHH----HCCCCCCCCHH----------HHCCCCCCCCCCCCCC-CCCCCCEEEECCCCCEECCCCCC
T ss_conf 588548889840087----51553666155----------5331222688873357-54255348985875244366750
Q ss_pred CHHHHH-----------HHHHHHCEEEEEEECCC--CCCHHHHH-----------HHHHHHHCCCCEEEEEECCCC
Q ss_conf 079999-----------99874217899997687--88647899-----------999999729978999975436
Q gi|254780233|r 95 FGGEVE-----------RILCMVESVVVLVDAAE--GPMPQTKF-----------VVGKALKIGLRPIVVVNKVDR 146 (624)
Q Consensus 95 F~gEVe-----------r~l~~~DgaiLvVdA~e--Gv~~QT~~-----------vl~~A~~~~l~~IvvINKiDr 146 (624)
T Consensus 193 ~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dl 268 (1188)
T COG3523 193 EVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADL 268 (1188)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 2348889998889997355788863799978999738999999999999999999999841567763899862100