HHsearch alignment for GI: 254780233 and conserved domain: COG4108
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=446.43 Aligned_cols=354 Identities=27% Similarity=0.436 Sum_probs=294.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCC------EECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCC
Q ss_conf 24314999854689877889999998396142322000------003885779870960646799999899799997289
Q gi|254780233|r 17 MQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSE------RVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTP 90 (624)
Q Consensus 17 ~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~------~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTP 90 (624)
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AGtVk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTP 89 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTP 89 (528)
T ss_pred HHHCCEEEEECCCCCCCCHHHHHHHHCCHHHHCCEEEECCCCCCCCCHHHHHHHHCCCEEEEEEEEEECCCEEEECCCCC
T ss_conf 64340368856888851188999972303430550122257763422778888756855876578760388488614799
Q ss_pred CCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHH-H-----
Q ss_conf 8754079999998742178999976878864789999999972997899997543667402568999998886-2-----
Q gi|254780233|r 91 GHADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLFS-A----- 164 (624)
Q Consensus 91 GH~DF~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~-~----- 164 (624)
T Consensus 90 GHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i~~~Pit 169 (528)
T COG4108 90 GHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGRDPLELLDEIEEELGIQCAPIT 169 (528)
T ss_pred CCCCCCHHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCEECCC
T ss_conf 86543236789998641046898603586688999999985059846997502365668868999999998577503552
Q ss_pred ---------------------------------------C---------CCCH-HH----CC------------------
Q ss_conf ---------------------------------------2---------6730-11----04------------------
Q gi|254780233|r 165 ---------------------------------------L---------DATD-AQ----LD------------------ 173 (624)
Q Consensus 165 ---------------------------------------l---------~a~d-e~----ld------------------ 173 (624)
T Consensus 170 WPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~EL~~~a~~~Fd~~~fl~G~ 249 (528)
T COG4108 170 WPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREELELVQGAGNEFDLEAFLAGE 249 (528)
T ss_pred CCCCCCCCCCEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCHHHHHCCC
T ss_conf 44568856432235035879984267776544344445788867777624479999999999997413320889885696
Q ss_pred -HHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCCCCCC----------CCHHHCCCCCCCCC---CCCCEEEEEE
Q ss_conf -266887886591646742233486413555321024542233----------20000011110136---7773499999
Q gi|254780233|r 174 -FPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPPVIS----------EGEFKMIGTILEKD---PFLGRIVTGR 239 (624)
Q Consensus 174 -~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~P~~~----------e~pl~~~V~~i~~d---~y~Gria~gR 239 (624)
T Consensus 250 ~TPVFFGSAl~N-----------FGV~~~L~~~~~~AP~P~~r~~~~~~v~p~e~kfsGFVFKIQANMDp~HRDRIAFmR 318 (528)
T COG4108 250 LTPVFFGSALGN-----------FGVDHFLDALVDWAPSPRARQADTREVEPTEDKFSGFVFKIQANMDPKHRDRIAFMR 318 (528)
T ss_pred CCCEEEHHHHHC-----------CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEE
T ss_conf 011570332311-----------588999999996389986544666731688775434899997489943342036786
Q ss_pred ECCCCCCCCCEEEEECCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCC
Q ss_conf 60780515988999605785012114553011036653444112545543222233210122110556521123366665
Q gi|254780233|r 240 IHSGTIKSNQNIKALSPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSIAGLVKATVADTFCDPSIDEPLKAQPIDP 319 (624)
Q Consensus 240 V~sGtlk~Gd~V~vl~~~g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIvaIaGl~~~~iGDTL~~~~~p~~Lp~i~i~~ 319 (624)
T Consensus 319 V~SGkferGMk~~~~r-tg---K~~~ls~~~~f~A~dRe~ve~A~aGDIIGl~nhGt~~IGDT~t~Ge-~~~f~giP~Fa 393 (528)
T COG4108 319 VCSGKFERGMKVTHVR-TG---KDVKLSDALTFMAQDRETVEEAYAGDIIGLHNHGTIQIGDTFTEGE-KLKFTGIPNFA 393 (528)
T ss_pred ECCCCCCCCCEEEEEE-CC---CCEEECCCHHHHHHHHHHHHHCCCCCEEECCCCCCEEECCEECCCC-EEEECCCCCCC
T ss_conf 3056435886533024-48---7256161076764216657542687767146787213266631585-56536899879
Q ss_pred CCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEECCHHHHHHHHHHHHHCCEEEEC
Q ss_conf 421578612686554444321017889999999730283799998599975999963645688887412334803301
Q gi|254780233|r 320 PTVTMTFGVNDSPLAGTEGDKVTSRMIRDRLFKEAEGNIALKIEESSSKDAFFVSGRGELQLAVLIETMRREGFELAV 397 (624)
Q Consensus 320 Ptis~~f~vn~sP~ag~eg~~~ts~~l~~rL~ke~~~dvsL~ve~~~~~~~~~v~GrGeLHL~IliE~mRREG~E~~v 397 (624)
T Consensus 394 PElfrrvrlkd-~~--------K~Kql~Kgl~QL~eEGav-Q~f~p~~~~d~IlGAVG~LQFeV~~~RL~~E-Y~ve~ 460 (528)
T COG4108 394 PELFRRVRLKD-PL--------KQKQLKKGLEQLAEEGAV-QVFKPLDGNDLILGAVGQLQFEVVQARLKNE-YNVEA 460 (528)
T ss_pred HHHHHHHHCCC-HH--------HHHHHHHHHHHHHHCCEE-EEECCCCCCCCEEEEECCHHHHHHHHHHHHH-HCCEE
T ss_conf 99999886178-68--------889999999998655756-9960377888658741001379999998765-18707