HHsearch alignment for GI: 254780233 and conserved domain: COG5256
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=337.02 Aligned_cols=283 Identities=28% Similarity=0.371 Sum_probs=231.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCC------------CCC---CEECCCCHHHHHCCCEEEEEEEEEEECCEEE
Q ss_conf 1499985468987788999999839614232------------200---0003885779870960646799999899799
Q gi|254780233|r 20 RNIAIIAHVDHGKTTLVDELLKQSGVFRDNQ------------RVS---ERVMDCNDLEKERGITILAKVTSIVWNDVRI 84 (624)
Q Consensus 20 RNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~------------~v~---~~vmD~~~~EreRGITI~a~~~~~~~~~~~i 84 (624)
T Consensus 8 ~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~~~ 87 (428)
T COG5256 8 LNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKYNF 87 (428)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCEEEEEEEEEEECCCCEE
T ss_conf 28999837878703445565777379798999999999986197716899985388667866668997778864377058
Q ss_pred EEECCCCCCCCHHHHHHHHHHHCEEEEEEECCCC-------CCHHHHHHHHHHHHCCCC-EEEEEECCCCCC---CCHHH
Q ss_conf 9972898754079999998742178999976878-------864789999999972997-899997543667---40256
Q gi|254780233|r 85 NIVDTPGHADFGGEVERILCMVESVVVLVDAAEG-------PMPQTKFVVGKALKIGLR-PIVVVNKVDRSD---ARADE 153 (624)
Q Consensus 85 NiiDTPGH~DF~gEVer~l~~~DgaiLvVdA~eG-------v~~QT~~vl~~A~~~~l~-~IvvINKiDr~~---a~~~~ 153 (624)
T Consensus 88 tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde~rf~e 167 (428)
T COG5256 88 TIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDEERFEE 167 (428)
T ss_pred EEEECCCHHHHHHHHHCCHHHCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHH
T ss_conf 99607846778987631331336799999888983101436587516789999856975699999715666627999999
Q ss_pred HHHHHHHHHHHCCCCHHHCCHHHHHHHHHCCEECCC-CCCCCCCCCHHHHHHHHCCCCCCCCC-CCHHHCCCCCCCCCCC
Q ss_conf 899999888622673011042668878865916467-42233486413555321024542233-2000001111013677
Q gi|254780233|r 154 VINEVFDLFSALDATDAQLDFPILYGSGRFGWMSDS-SDGSRDQGMVPLLNLIVDHVPPPVIS-EGEFKMIGTILEKDPF 231 (624)
Q Consensus 154 v~~ei~dlf~~l~a~de~ld~Pv~~~Sa~~G~~~~~-~~~~~~~gl~~Lld~Ii~~iP~P~~~-e~pl~~~V~~i~~d~y 231 (624)
T Consensus 168 i~~~v~~l~k~~G~~~~--~v~FIPiSg~~G~Nl~~~s~~~pWY~GpTLleaL-d~~~~p~~~~d~Plr~pI~~v~~i~~ 244 (428)
T COG5256 168 IVSEVSKLLKMVGYNPK--DVPFIPISGFKGDNLTKKSENMPWYKGPTLLEAL-DQLEPPERPLDKPLRLPIQDVYSISG 244 (428)
T ss_pred HHHHHHHHHHHCCCCCC--CCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHH-HCCCCCCCCCCCCEEEEEEEEEEECC
T ss_conf 99999999997199866--7707962244677633267678672487189897-45578987778881768001787168
Q ss_pred CCEEEEEEECCCCCCCCCEEEEECCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCC--CCCC--CCCCCCCEECCCC
Q ss_conf 73499999607805159889996057850121145530110366534441125455432--2223--3210122110556
Q gi|254780233|r 232 LGRIVTGRIHSGTIKSNQNIKALSPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVS--IAGL--VKATVADTFCDPS 307 (624)
Q Consensus 232 ~Gria~gRV~sGtlk~Gd~V~vl~~~g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIva--IaGl--~~~~iGDTL~~~~ 307 (624)
T Consensus 245 ~gtv~vGrVEsG~i~~g~~v~~~p~-~---~~~evksie~~----~~~~~~a~~GD~i~~~vrgv~~~dI~~Gdv~~~~~ 316 (428)
T COG5256 245 IGTVPVGRVESGVIKPGQKVTFMPA-G---VVGEVKSIEMH----HEEISQAEPGDNVGFNVRGVEKNDIRRGDVIGHSD 316 (428)
T ss_pred CCEEEEEEEEEEEECCCCEEEEECC-C---CEEEEEEEEEC----CCCCCCCCCCCEEEEEECCCCHHCCCCCCEECCCC
T ss_conf 8547887886134516987999648-6---12787645612----66544478987688983577543167765740478
Q ss_pred CCCCCC
Q ss_conf 521123
Q gi|254780233|r 308 IDEPLK 313 (624)
Q Consensus 308 ~p~~Lp 313 (624)
T Consensus 317 n~~t~~ 322 (428)
T COG5256 317 NPPTVS 322 (428)
T ss_pred CCCCCC
T ss_conf 886435