HHsearch alignment for GI: 254780233 and conserved domain: PRK00771
>PRK00771 signal recognition particle protein Srp54; Provisional.
Probab=94.53 E-value=0.37 Score=26.79 Aligned_cols=128 Identities=22% Similarity=0.305 Sum_probs=66.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCC-CCCCEECCCC---HHHHH------CCCEEEEEEE----------EE-EEC
Q ss_conf 99985468987788999999839614232-2000003885---77987------0960646799----------99-989
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQ-RVSERVMDCN---DLEKE------RGITILAKVT----------SI-VWN 80 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~-~v~~~vmD~~---~~Ere------RGITI~a~~~----------~~-~~~ 80 (624)
T Consensus 100 im~vGlqGsGKTTT~aKLA~~~k---k~g~kv~lvaaDt~RpaA~eQL~~la~~~~v~~~~~~~~~dp~~i~~~a~~~~k 176 (433)
T PRK00771 100 ILLVGLQGSGKTTTAAKLARYFQ---KKGLKVGVICADTWRPGAYEQLKQLCEKINVPFYGDPKEKDAVKIVKEGLEKLK 176 (433)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH---HCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 99973788978999999999999---779946785067883689999999998638873178899999999999999845
Q ss_pred CEEEEEECCCCC--CC--CHHHHHHHHHHH--CEEEEEEECCCCCCHHHHHHHHHHHHCCCCE-EEEEECCCCCCCCHHH
Q ss_conf 979999728987--54--079999998742--1789999768788647899999999729978-9999754366740256
Q gi|254780233|r 81 DVRINIVDTPGH--AD--FGGEVERILCMV--ESVVVLVDAAEGPMPQTKFVVGKALKIGLRP-IVVVNKVDRSDARADE 153 (624)
Q Consensus 81 ~~~iNiiDTPGH--~D--F~gEVer~l~~~--DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~-IvvINKiDr~~a~~~~ 153 (624)
T Consensus 177 ~~DvviiDTAGRl~~d~~Lm~El~~i~~~~~P~e~llV~Da~~G---Q~a~~~a~~F~~~~~i~gvIlTKlDgd-arGGa 252 (433)
T PRK00771 177 KVDVIIVDTAGRHKLEKDLIEEMKQIKEITKPDEVILVIDATIG---QQASEQAKAFKEAVGIGGIIITKLDGT-AKGGG 252 (433)
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCC---HHHHHHHHHHHHHCCCCEEEEECCCCC-CCCCH
T ss_conf 69889997765210409999999999877579768998654422---678999999987538873799725678-87305
Q ss_pred HHH
Q ss_conf 899
Q gi|254780233|r 154 VIN 156 (624)
Q Consensus 154 v~~ 156 (624)
T Consensus 253 aLS 255 (433)
T PRK00771 253 ALS 255 (433)
T ss_pred HHH
T ss_conf 421