HHsearch alignment for GI: 254780233 and conserved domain: PRK00771

>PRK00771 signal recognition particle protein Srp54; Provisional.
Probab=94.53  E-value=0.37  Score=26.79  Aligned_cols=128  Identities=22%  Similarity=0.305  Sum_probs=66.2

Q ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCCCCC-CCCCEECCCC---HHHHH------CCCEEEEEEE----------EE-EEC
Q ss_conf             99985468987788999999839614232-2000003885---77987------0960646799----------99-989
Q gi|254780233|r   22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQ-RVSERVMDCN---DLEKE------RGITILAKVT----------SI-VWN   80 (624)
Q Consensus        22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~-~v~~~vmD~~---~~Ere------RGITI~a~~~----------~~-~~~   80 (624)
T Consensus       100 im~vGlqGsGKTTT~aKLA~~~k---k~g~kv~lvaaDt~RpaA~eQL~~la~~~~v~~~~~~~~~dp~~i~~~a~~~~k  176 (433)
T PRK00771        100 ILLVGLQGSGKTTTAAKLARYFQ---KKGLKVGVICADTWRPGAYEQLKQLCEKINVPFYGDPKEKDAVKIVKEGLEKLK  176 (433)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH---HCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf             99973788978999999999999---779946785067883689999999998638873178899999999999999845


Q ss_pred             CEEEEEECCCCC--CC--CHHHHHHHHHHH--CEEEEEEECCCCCCHHHHHHHHHHHHCCCCE-EEEEECCCCCCCCHHH
Q ss_conf             979999728987--54--079999998742--1789999768788647899999999729978-9999754366740256
Q gi|254780233|r   81 DVRINIVDTPGH--AD--FGGEVERILCMV--ESVVVLVDAAEGPMPQTKFVVGKALKIGLRP-IVVVNKVDRSDARADE  153 (624)
Q Consensus        81 ~~~iNiiDTPGH--~D--F~gEVer~l~~~--DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~-IvvINKiDr~~a~~~~  153 (624)
T Consensus       177 ~~DvviiDTAGRl~~d~~Lm~El~~i~~~~~P~e~llV~Da~~G---Q~a~~~a~~F~~~~~i~gvIlTKlDgd-arGGa  252 (433)
T PRK00771        177 KVDVIIVDTAGRHKLEKDLIEEMKQIKEITKPDEVILVIDATIG---QQASEQAKAFKEAVGIGGIIITKLDGT-AKGGG  252 (433)
T ss_pred             CCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCC---HHHHHHHHHHHHHCCCCEEEEECCCCC-CCCCH
T ss_conf             69889997765210409999999999877579768998654422---678999999987538873799725678-87305


Q ss_pred             HHH
Q ss_conf             899
Q gi|254780233|r  154 VIN  156 (624)
Q Consensus       154 v~~  156 (624)
T Consensus       253 aLS  255 (433)
T PRK00771        253 ALS  255 (433)
T ss_pred             HHH
T ss_conf             421