HHsearch alignment for GI: 254780233 and conserved domain: PRK06731
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=95.24 E-value=0.17 Score=29.02 Aligned_cols=138 Identities=18% Similarity=0.215 Sum_probs=69.5
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCC---HHHHHC------CCEEEEEEEE---------E
Q ss_conf 024314999854689877889999998396142322000003885---779870------9606467999---------9
Q gi|254780233|r 16 YMQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCN---DLEKER------GITILAKVTS---------I 77 (624)
Q Consensus 16 ~~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~---~~EreR------GITI~a~~~~---------~ 77 (624)
T Consensus 72 ~~~~~vI~lvG~~G~GKTTT~AKLA~~~~--~~~~kV~lia~DtyR~aA~eQLk~~a~~l~v~~~~~~~~~~~~~~~~~~ 149 (270)
T PRK06731 72 EKEVQTIALIGPTGVGKTTTLAKMAWQFH--GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYF 149 (270)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHH--HCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHHHH
T ss_conf 79981899988898988999999999998--6799089998388888899999999998199535458878999999999
Q ss_pred -EECCEEEEEECCCCC--CC--CHHHHHHHHHHH--CEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
Q ss_conf -989979999728987--54--079999998742--17899997687886478999999997299789999754366740
Q gi|254780233|r 78 -VWNDVRINIVDTPGH--AD--FGGEVERILCMV--ESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDAR 150 (624)
Q Consensus 78 -~~~~~~iNiiDTPGH--~D--F~gEVer~l~~~--DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~ 150 (624)
T Consensus 150 ~~~~~~DvilIDTAGR~~~d~~lm~el~~~~~~~~p~~~~Lvldas~~~~~~~~-~~~~f~~~~i-~gvIlTKlD~-ta~ 226 (270)
T PRK06731 150 KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIE-IITNFKDIHI-DGIVFTKFDE-TAS 226 (270)
T ss_pred HHHCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHH-HHHHHCCCCC-CEEEEECCCC-CCC
T ss_conf 997699999997999871469999999998606389879999868777699999-9998077999-8899965358-997
Q ss_pred HHHHHHHH
Q ss_conf 25689999
Q gi|254780233|r 151 ADEVINEV 158 (624)
Q Consensus 151 ~~~v~~ei 158 (624)
T Consensus 227 gG~als~~ 234 (270)
T PRK06731 227 SGELLKIP 234 (270)
T ss_pred CCHHHHHH
T ss_conf 72999999