HHsearch alignment for GI: 254780233 and conserved domain: PRK13849
>PRK13849 putative crown gall tumor protein VirC1; Provisional.
Probab=95.39 E-value=0.051 Score=32.47 Aligned_cols=133 Identities=13% Similarity=0.139 Sum_probs=68.2
Q ss_pred EEEEC-CCCCCHHHHHHHHHHHCCCCCCCCC-CCCEECCCCHH-------H--HHCCC-----EEEEEEE-E--------
Q ss_conf 99985-4689877889999998396142322-00000388577-------9--87096-----0646799-9--------
Q gi|254780233|r 22 IAIIA-HVDHGKTTLVDELLKQSGVFRDNQR-VSERVMDCNDL-------E--KERGI-----TILAKVT-S-------- 76 (624)
Q Consensus 22 iaIia-HvDhGKTTL~d~LL~~sG~~~~~~~-v~~~vmD~~~~-------E--reRGI-----TI~a~~~-~-------- 76 (624)
T Consensus 4 i~~~~~KGG~GKtT~a~~l---a~~~~~~g~~v--~~iD~Dpq~s~~~W~e~a~~~~~~~~~~~v~~~~~~~~l~~~~e~ 78 (231)
T PRK13849 4 LTFCSFKGGAGKTTALMGL---CAALASDGKRV--ALFEADENRPLTRWKENALRSNTWDPACEVYAADELPLLEAAYED 78 (231)
T ss_pred EEEEECCCCCCHHHHHHHH---HHHHHHCCCEE--EEEECCCCCCHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHH
T ss_conf 9996189987699999999---99999789959--999689986889999876525898877523405652578999988
Q ss_pred EEECCEEEEEECCCCCCCCHHHHHHHHHHHCEEEEEEECCCCCC---HHHHHHHH---HHHHCCCCEEEEEECCCCCCCC
Q ss_conf 99899799997289875407999999874217899997687886---47899999---9997299789999754366740
Q gi|254780233|r 77 IVWNDVRINIVDTPGHADFGGEVERILCMVESVVVLVDAAEGPM---PQTKFVVG---KALKIGLRPIVVVNKVDRSDAR 150 (624)
Q Consensus 77 ~~~~~~~iNiiDTPGH~DF~gEVer~l~~~DgaiLvVdA~eGv~---~QT~~vl~---~A~~~~l~~IvvINKiDr~~a~ 150 (624)
T Consensus 79 ~~~~~~D~VIIDtpg~~s~--~~~~Ai~~ADLVLIP~qPSp~D~~~a~~tv~~i~~~~~~~~~~ip~~vlltRv~a--~~ 154 (231)
T PRK13849 79 AELQGFDYALADTHGGSSE--LNNTIIASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIPTAILRQRVPV--GR 154 (231)
T ss_pred HHHCCCCEEEECCCCCCCH--HHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCH--HH
T ss_conf 7536998899818997758--9999999789899779998667999999999999999972878865666540504--54
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 2568999998886
Q gi|254780233|r 151 ADEVINEVFDLFS 163 (624)
Q Consensus 151 ~~~v~~ei~dlf~ 163 (624)
T Consensus 155 ~t~~~~~i~~~le 167 (231)
T PRK13849 155 LTTSQRAMSDMLE 167 (231)
T ss_pred HCHHHHHHHHHHH
T ss_conf 0688999999996