HHsearch alignment for GI: 254780233 and conserved domain: TIGR03348
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=96.39 E-value=0.026 Score=34.43 Aligned_cols=110 Identities=25% Similarity=0.279 Sum_probs=60.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCC--EEEEEEEEEEECCEEEEEECCCCCC---CCH
Q ss_conf 99985468987788999999839614232200000388577987096--0646799999899799997289875---407
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGI--TILAKVTSIVWNDVRINIVDTPGHA---DFG 96 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGI--TI~a~~~~~~~~~~~iNiiDTPGH~---DF~ 96 (624)
T Consensus 114 YlviG~~gsGKTt~l----~~Sgl~fPl~-------~~~~~~~~~g~ggt~---~cdwwft~-~AVliDtaGry~~Q~~~ 178 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLL----QNSGLKFPLA-------ERLGAAALRGVGGTR---NCDWWFTD-EAVLIDTAGRYTTQDSD 178 (1169)
T ss_pred EEEECCCCCCHHHHH----HHCCCCCCCC-------CCCCHHHCCCCCCCC---CCCEEEEC-CEEEEECCCCEECCCCC
T ss_conf 899789998668999----8379988774-------100112215889985---55716527-87999479760268886
Q ss_pred HHHHH-----HH---------HHHCEEEEEEECCC---CCCHHHH--------HH--HHHHHHCCCCEEEEEECCCC
Q ss_conf 99999-----98---------74217899997687---8864789--------99--99999729978999975436
Q gi|254780233|r 97 GEVER-----IL---------CMVESVVVLVDAAE---GPMPQTK--------FV--VGKALKIGLRPIVVVNKVDR 146 (624)
Q Consensus 97 gEVer-----~l---------~~~DgaiLvVdA~e---Gv~~QT~--------~v--l~~A~~~~l~~IvvINKiDr 146 (624)
T Consensus 179 ~~~d~~~W~~fL~lLkk~R~r~piNGvil~is~~~Ll~~~~~~~~~~a~~lr~Rl~El~~~lg~~~PVYv~~TK~Dl 255 (1169)
T TIGR03348 179 PEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADL 255 (1169)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHH
T ss_conf 40018999999999986489899876899978999747899999999999999999999982998775998664012