HHsearch alignment for GI: 254780233 and conserved domain: TIGR03598

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.54  E-value=7.9e-14  Score=109.99  Aligned_cols=146  Identities=18%  Similarity=0.186  Sum_probs=95.5

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCC----
Q ss_conf             2431499985468987788999999839614232200000388577987096064679999989979999728987----
Q gi|254780233|r   17 MQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGH----   92 (624)
Q Consensus        17 ~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH----   92 (624)
T Consensus        16 ~~~p~IaivGrpNvGKSTL~N~L~g~k~----~a~vs----~------~pGtTr~---i~~~~~~~~~~lvDtpGyG~~~   78 (179)
T TIGR03598        16 DDGPEIAFAGRSNVGKSSLINALTNRKK----LARTS----K------TPGRTQL---INFFEVNDGFRLVDLPGYGYAK   78 (179)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHCCCC----EEEEC----C------CCCEEEE---CCEEEECCCEEEEECCCHHHCC
T ss_conf             8897899986999888999999868985----58970----8------9973660---2320104736999777602112


Q ss_pred             ------CCCHHHHHHHH---HHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC-CCHHHHHHHHHHHH
Q ss_conf             ------54079999998---742178999976878864789999999972997899997543667-40256899999888
Q gi|254780233|r   93 ------ADFGGEVERIL---CMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSD-ARADEVINEVFDLF  162 (624)
Q Consensus        93 ------~DF~gEVer~l---~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~-a~~~~v~~ei~dlf  162 (624)
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~l~~villiDa~~gl~~~D~~i~~~l~~~~kp~iivlNK~Dll~~~~~~~~~~~i~~~l  158 (179)
T TIGR03598        79 VSKEEKEKWQKLIEEYLRGRENLKGVVLLMDIRHPLKELDLEMLEWLDERGIPVLIVLTKADKLKKSERNKQLKKIKKAL  158 (179)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf             78888999999999999998864302898743779989999999999975998899997813069899999999999997


Q ss_pred             HHCCCCHHHCCHHHHHHHHHCC
Q ss_conf             6226730110426688788659
Q gi|254780233|r  163 SALDATDAQLDFPILYGSGRFG  184 (624)
Q Consensus       163 ~~l~a~de~ld~Pv~~~Sa~~G  184 (624)
T Consensus       159 ~~~~-----~~~~v~~ISA~~g  175 (179)
T TIGR03598       159 KKDA-----DDPSVQLFSSLKK  175 (179)
T ss_pred             HCCC-----CCCCEEEEECCCC
T ss_conf             3366-----8894899979998