HHsearch alignment for GI: 254780233 and conserved domain: TIGR03598
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.54 E-value=7.9e-14 Score=109.99 Aligned_cols=146 Identities=18% Similarity=0.186 Sum_probs=95.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCC----
Q ss_conf 2431499985468987788999999839614232200000388577987096064679999989979999728987----
Q gi|254780233|r 17 MQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGH---- 92 (624)
Q Consensus 17 ~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH---- 92 (624)
T Consensus 16 ~~~p~IaivGrpNvGKSTL~N~L~g~k~----~a~vs----~------~pGtTr~---i~~~~~~~~~~lvDtpGyG~~~ 78 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKK----LARTS----K------TPGRTQL---INFFEVNDGFRLVDLPGYGYAK 78 (179)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC----EEEEC----C------CCCEEEE---CCEEEECCCEEEEECCCHHHCC
T ss_conf 8897899986999888999999868985----58970----8------9973660---2320104736999777602112
Q ss_pred ------CCCHHHHHHHH---HHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC-CCHHHHHHHHHHHH
Q ss_conf ------54079999998---742178999976878864789999999972997899997543667-40256899999888
Q gi|254780233|r 93 ------ADFGGEVERIL---CMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSD-ARADEVINEVFDLF 162 (624)
Q Consensus 93 ------~DF~gEVer~l---~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~-a~~~~v~~ei~dlf 162 (624)
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~l~~villiDa~~gl~~~D~~i~~~l~~~~kp~iivlNK~Dll~~~~~~~~~~~i~~~l 158 (179)
T TIGR03598 79 VSKEEKEKWQKLIEEYLRGRENLKGVVLLMDIRHPLKELDLEMLEWLDERGIPVLIVLTKADKLKKSERNKQLKKIKKAL 158 (179)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 78888999999999999998864302898743779989999999999975998899997813069899999999999997
Q ss_pred HHCCCCHHHCCHHHHHHHHHCC
Q ss_conf 6226730110426688788659
Q gi|254780233|r 163 SALDATDAQLDFPILYGSGRFG 184 (624)
Q Consensus 163 ~~l~a~de~ld~Pv~~~Sa~~G 184 (624)
T Consensus 159 ~~~~-----~~~~v~~ISA~~g 175 (179)
T TIGR03598 159 KKDA-----DDPSVQLFSSLKK 175 (179)
T ss_pred HCCC-----CCCCEEEEECCCC
T ss_conf 3366-----8894899979998