HHsearch alignment for GI: 254780233 and conserved domain: cd01863
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.20 E-value=2.8e-10 Score=86.69 Aligned_cols=154 Identities=16% Similarity=0.228 Sum_probs=98.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHHH
Q ss_conf 99985468987788999999839614232200000388577987096064679999989979999728987540799999
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVER 101 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVer 101 (624)
T Consensus 3 ivvvG~~~vGKTsli~r~~~--~~f~~~~~------------~ti~~~~~~~~~~~~~~~~~l~iwDt~g~~~~~~~~~~ 68 (161)
T cd01863 3 ILLIGDSGVGKSSLLLRFTD--DTFDPDLA------------ATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSS 68 (161)
T ss_pred EEEECCCCCCHHHHHHHHHH--CCCCCCCC------------CCCCCCCEEEEEEECCEEEEEEEEECCCCCCCCCCHHH
T ss_conf 99999799579999999963--99999848------------73133423899999999999999999998423534224
Q ss_pred HHHHHCEEEEEEECCCCCCHHHHHHHHHHHH-----CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHH
Q ss_conf 9874217899997687886478999999997-----29978999975436674025689999988862267301104266
Q gi|254780233|r 102 ILCMVESVVVLVDAAEGPMPQTKFVVGKALK-----IGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFPI 176 (624)
Q Consensus 102 ~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~-----~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~Pv 176 (624)
T Consensus 69 ~~~~a~~~ilvfd~~~~~Sf~~i~~~~~~i~~~~~~~~~~~ilVgnK~D~~~~~v~--~~~~~~~a~~-------~~~~y 139 (161)
T cd01863 69 YYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVT--REEGLKFARK-------HNMLF 139 (161)
T ss_pred HHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCC--HHHHHHHHHH-------CCCEE
T ss_conf 41321534899767826569999999999998568888737887310440006899--9999999998-------69999
Q ss_pred HHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 887886591646742233486413555321024
Q gi|254780233|r 177 LYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 177 ~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
T Consensus 140 ~e~Sak~g-----------~nV~~~F~~l~~~i 161 (161)
T cd01863 140 IETSAKTR-----------DGVQQAFEELVEKI 161 (161)
T ss_pred EEECCCCC-----------CCHHHHHHHHHHHC
T ss_conf 99715868-----------15999999999709