HHsearch alignment for GI: 254780233 and conserved domain: cd01871
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=98.94 E-value=3.1e-08 Score=73.29 Aligned_cols=157 Identities=13% Similarity=0.151 Sum_probs=93.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEE---EEEEEEEEECCEEEEEECCCCCCCCHHH
Q ss_conf 9998546898778899999983961423220000038857798709606---4679999989979999728987540799
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITI---LAKVTSIVWNDVRINIVDTPGHADFGGE 98 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI---~a~~~~~~~~~~~iNiiDTPGH~DF~gE 98 (624)
T Consensus 4 ivlvGd~~VGKTsli~r~~~--~~f~~~~----------------~~Ti~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~~ 65 (174)
T cd01871 4 CVVVGDGAVGKTCLLISYTT--NAFPGEY----------------IPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRL 65 (174)
T ss_pred EEEECCCCCCHHHHHHHHHH--CCCCCCC----------------CCEEEEEEEEEEEECCEEEEEEEECCCCCCCCHHH
T ss_conf 99989999869999999973--9999986----------------88378876799999999999999869997240678
Q ss_pred HHHHHHHHCEEEEEEECCCCC-CHHHHHHHHHHHH---CCCCEEEEEECCCCCCCCHHHHHHHHHHH-HHHCCCC-----
Q ss_conf 999987421789999768788-6478999999997---29978999975436674025689999988-8622673-----
Q gi|254780233|r 99 VERILCMVESVVVLVDAAEGP-MPQTKFVVGKALK---IGLRPIVVVNKVDRSDARADEVINEVFDL-FSALDAT----- 168 (624)
Q Consensus 99 Ver~l~~~DgaiLvVdA~eGv-~~QT~~vl~~A~~---~~l~~IvvINKiDr~~a~~~~v~~ei~dl-f~~l~a~----- 168 (624)
T Consensus 66 ~~~~~~~a~~~ilvydi~~~~SF~~i~~~w~~~i~~~~~~~piiLVGnK~DL~~~~~--~~~~~~~~~~~~vs~~eg~~~ 143 (174)
T cd01871 66 RPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD--TIEKLKEKKLTPITYPQGLAM 143 (174)
T ss_pred HHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHH--HHHHHHHCCCCCCCHHHHHHH
T ss_conf 899874066899998679878899999999999998588999798747301310045--677886514677589999999
Q ss_pred HHHCC-HHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 01104-266887886591646742233486413555321024
Q gi|254780233|r 169 DAQLD-FPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 169 de~ld-~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
T Consensus 144 a~~~~~~~f~EtSAk~~-----------~nV~e~F~~lir~i 174 (174)
T cd01871 144 AKEIGAVKYLECSALTQ-----------KGLKTVFDEAIRAV 174 (174)
T ss_pred HHHCCCCEEEECCCCCC-----------CCHHHHHHHHHHHC
T ss_conf 98759978999187889-----------59799999999519