HHsearch alignment for GI: 254780233 and conserved domain: cd01875
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=98.76 E-value=3e-07 Score=66.77 Aligned_cols=158 Identities=15% Similarity=0.120 Sum_probs=92.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHH
Q ss_conf 49998546898778899999983961423220000038857798709606467999998997999972898754079999
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVE 100 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVe 100 (624)
T Consensus 5 KivlvGd~~VGKTsli~r~~~--~~F~~~y~--pti~~-----------~~~~~~~i~~~~v~l~iwDtaG~e~~~~~~~ 69 (191)
T cd01875 5 KCVVVGDGAVGKTCLLICYTT--NAFPKEYI--PTVFD-----------NYSAQTAVDGRTVSLNLWDTAGQEEYDRLRT 69 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHH--CCCCCCCC--CCCCE-----------EEEEEEEECCEEEEEEEEECCCCCCHHHHHH
T ss_conf 999999999899999999972--99998646--62100-----------0467899999999999985888700356778
Q ss_pred HHHHHHCEEEEEEECCCCCCHHHH----HHHHHHHH---CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCH----
Q ss_conf 998742178999976878864789----99999997---2997899997543667402568999998886226730----
Q gi|254780233|r 101 RILCMVESVVVLVDAAEGPMPQTK----FVVGKALK---IGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATD---- 169 (624)
Q Consensus 101 r~l~~~DgaiLvVdA~eGv~~QT~----~vl~~A~~---~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~d---- 169 (624)
T Consensus 70 ~~~~~a~~~ilvfdvt~~---~Sf~~v~~~w~~ei~~~~~~~piiLvGnK~DL~~~~--~~~~~~~e~~~~~vs~eeg~~ 144 (191)
T cd01875 70 LSYPQTNVFIICFSIASP---SSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDA--DTLKKLKEQGQAPITPQQGGA 144 (191)
T ss_pred HHHCCCCEEEEEEECCCH---HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCH--HHHHHHHHHHCCCCCHHHHHH
T ss_conf 774478689999857977---889999999999999709699789998880102345--778887764137556999999
Q ss_pred --HHCC-HHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf --1104-266887886591646742233486413555321024
Q gi|254780233|r 170 --AQLD-FPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 170 --e~ld-~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
T Consensus 145 ~a~~~~~~~y~EtSAkt~-----------~nV~e~F~~l~k~i 176 (191)
T cd01875 145 LAKQIHAVKYLECSALNQ-----------DGVKEVFAEAVRAV 176 (191)
T ss_pred HHHHHCCCEEEECCCCCC-----------CCHHHHHHHHHHHH
T ss_conf 999809988999068989-----------69899999999998