HHsearch alignment for GI: 254780233 and conserved domain: cd01875

>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=98.76  E-value=3e-07  Score=66.77  Aligned_cols=158  Identities=15%  Similarity=0.120  Sum_probs=92.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHH
Q ss_conf             49998546898778899999983961423220000038857798709606467999998997999972898754079999
Q gi|254780233|r   21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVE  100 (624)
Q Consensus        21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVe  100 (624)
T Consensus         5 KivlvGd~~VGKTsli~r~~~--~~F~~~y~--pti~~-----------~~~~~~~i~~~~v~l~iwDtaG~e~~~~~~~   69 (191)
T cd01875           5 KCVVVGDGAVGKTCLLICYTT--NAFPKEYI--PTVFD-----------NYSAQTAVDGRTVSLNLWDTAGQEEYDRLRT   69 (191)
T ss_pred             EEEEECCCCCCHHHHHHHHHH--CCCCCCCC--CCCCE-----------EEEEEEEECCEEEEEEEEECCCCCCHHHHHH
T ss_conf             999999999899999999972--99998646--62100-----------0467899999999999985888700356778


Q ss_pred             HHHHHHCEEEEEEECCCCCCHHHH----HHHHHHHH---CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCH----
Q ss_conf             998742178999976878864789----99999997---2997899997543667402568999998886226730----
Q gi|254780233|r  101 RILCMVESVVVLVDAAEGPMPQTK----FVVGKALK---IGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATD----  169 (624)
Q Consensus       101 r~l~~~DgaiLvVdA~eGv~~QT~----~vl~~A~~---~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~d----  169 (624)
T Consensus        70 ~~~~~a~~~ilvfdvt~~---~Sf~~v~~~w~~ei~~~~~~~piiLvGnK~DL~~~~--~~~~~~~e~~~~~vs~eeg~~  144 (191)
T cd01875          70 LSYPQTNVFIICFSIASP---SSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDA--DTLKKLKEQGQAPITPQQGGA  144 (191)
T ss_pred             HHHCCCCEEEEEEECCCH---HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCH--HHHHHHHHHHCCCCCHHHHHH
T ss_conf             774478689999857977---889999999999999709699789998880102345--778887764137556999999


Q ss_pred             --HHCC-HHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf             --1104-266887886591646742233486413555321024
Q gi|254780233|r  170 --AQLD-FPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV  209 (624)
Q Consensus       170 --e~ld-~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i  209 (624)
T Consensus       145 ~a~~~~~~~y~EtSAkt~-----------~nV~e~F~~l~k~i  176 (191)
T cd01875         145 LAKQIHAVKYLECSALNQ-----------DGVKEVFAEAVRAV  176 (191)
T ss_pred             HHHHHCCCEEEECCCCCC-----------CCHHHHHHHHHHHH
T ss_conf             999809988999068989-----------69899999999998