HHsearch alignment for GI: 254780233 and conserved domain: cd01888
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=100.00 E-value=3.3e-39 Score=276.61 Aligned_cols=165 Identities=31% Similarity=0.376 Sum_probs=134.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEE----------E------EEEC----
Q ss_conf 4999854689877889999998396142322000003885779870960646799----------9------9989----
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVT----------S------IVWN---- 80 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~----------~------~~~~---- 80 (624)
T Consensus 2 Ni~iiGHVDhGKSTLi~~L---~g~~----------~~~~~~e~er~it~klg~a~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKAL---SGVW----------TVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSP 68 (203)
T ss_pred EEEEEEEECCCHHHHHHHH---HCCC----------HHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCC
T ss_conf 6999988578799999997---0851----------24407888677603111456666511121223101111012442
Q ss_pred -------------CEEEEEECCCCCCCCHHHHHHHHHHHCEEEEEEECCCCC-CHHHHHHHHHHHHCCCC-EEEEEECCC
Q ss_conf -------------979999728987540799999987421789999768788-64789999999972997-899997543
Q gi|254780233|r 81 -------------DVRINIVDTPGHADFGGEVERILCMVESVVVLVDAAEGP-MPQTKFVVGKALKIGLR-PIVVVNKVD 145 (624)
Q Consensus 81 -------------~~~iNiiDTPGH~DF~gEVer~l~~~DgaiLvVdA~eGv-~~QT~~vl~~A~~~~l~-~IvvINKiD 145 (624)
T Consensus 69 ~~~~~~~~~~~~~~r~~tiiD~PGH~df~~nmi~Gas~aD~aiLvVdA~eG~~~~QT~eH~~l~~~lgv~~iIV~vNKmD 148 (203)
T cd01888 69 ECECPGCGGETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKID 148 (203)
T ss_pred EEEECCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 14531456543112479998689879999999976643476689864366775077999999999849986367750777
Q ss_pred CCCC-CHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCCCC
Q ss_conf 6674-0256899999888622673011042668878865916467422334864135553210245422
Q gi|254780233|r 146 RSDA-RADEVINEVFDLFSALDATDAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPPV 213 (624)
Q Consensus 146 r~~a-~~~~v~~ei~dlf~~l~a~de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~P~ 213 (624)
T Consensus 149 lv~~~~~~~~~~ei~~~l~~~~~~----~~~iIPiSA~~G-----------~NI~~ll~~i~~~ip~P~ 202 (203)
T cd01888 149 LVKEEQALENYEQIKKFVKGTIAE----NAPIIPISAQLK-----------YNIDVLLEYIVKKIPTPP 202 (203)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCC----CCEEEEEECCCC-----------CCHHHHHHHHHHHCCCCC
T ss_conf 788678999999999985521689----985999147889-----------799999999986782999