HHsearch alignment for GI: 254780233 and conserved domain: cd01891
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=100.00 E-value=0 Score=449.80 Aligned_cols=194 Identities=66% Similarity=1.098 Sum_probs=187.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHH
Q ss_conf 43149998546898778899999983961423220000038857798709606467999998997999972898754079
Q gi|254780233|r 18 QIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGG 97 (624)
Q Consensus 18 ~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~g 97 (624)
T Consensus 1 nIRNv~iiGHvd~GKTTL~~~Ll~~tg~~~~~~~~~~~~~D~~~~E~ergiTI~~~~~~~~~~~~~~n~IDtPGH~dF~~ 80 (194)
T cd01891 1 DIRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGG 80 (194)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHCCCCEEEEEEEEEECCEEEEEEECCCCHHHHH
T ss_conf 98789999068987999999999974876304652168614758888728763345899998998899998998477777
Q ss_pred HHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHH
Q ss_conf 99999874217899997687886478999999997299789999754366740256899999888622673011042668
Q gi|254780233|r 98 EVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFPIL 177 (624)
Q Consensus 98 EVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~Pv~ 177 (624)
T Consensus 81 ~~~~~~~~~D~ailVVdA~~Gv~~QT~~~l~~a~~~~~~~iv~iNK~D~~~a~~~~v~~ei~~~~~~~~~~~~~~~~pii 160 (194)
T cd01891 81 EVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFPVL 160 (194)
T ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEE
T ss_conf 89877643446789865378975899999999987299749988564589888999999999999863999333588578
Q ss_pred HHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCCC
Q ss_conf 87886591646742233486413555321024542
Q gi|254780233|r 178 YGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPP 212 (624)
Q Consensus 178 ~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~P 212 (624)
T Consensus 161 ~~SA~~G~~~d~~~~-~~~~~~~ll~ai~~~iP~P 194 (194)
T cd01891 161 YASAKNGWASLNLED-PSEDLEPLFDTIIEHVPAP 194 (194)
T ss_pred EEECCCCCCCCCCCC-CCCCHHHHHHHHHHHCCCC
T ss_conf 725655335778865-6465999999999658898