HHsearch alignment for GI: 254780233 and conserved domain: cd01892
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.78 E-value=1.6e-07 Score=68.60 Aligned_cols=157 Identities=12% Similarity=0.077 Sum_probs=97.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCH
Q ss_conf 24314999854689877889999998396142322000003885779870960646799999899799997289875407
Q gi|254780233|r 17 MQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFG 96 (624)
Q Consensus 17 ~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~ 96 (624)
T Consensus 2 r~vfk~~VlG~~~VGKTsLi~rf~~--~~f~~~~y~-----------~Ti~~~~~~k~v~v~g~~~~L~i~Dt~g~e~~~ 68 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLG--RSFSLNAYS-----------PTIKPRYAVNTVEVYGQEKYLILREVGEDEVAI 68 (169)
T ss_pred CEEEEEEEECCCCCCHHHHHHHHHC--CCCCCCCCC-----------CCCCCEEEEEEEEECCEEEEEEEEECCCCHHHH
T ss_conf 5089999999999889999999964--999866656-----------754661899999989999999998556532355
Q ss_pred HHHHHHHHHHCEEEEEEECCCCCCHHHH----HHHHHHH-HCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 9999998742178999976878864789----9999999-7299789999754366740256899999888622673011
Q gi|254780233|r 97 GEVERILCMVESVVVLVDAAEGPMPQTK----FVVGKAL-KIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQ 171 (624)
Q Consensus 97 gEVer~l~~~DgaiLvVdA~eGv~~QT~----~vl~~A~-~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ 171 (624)
T Consensus 69 ~l~~~~~~~ad~~ilVyDit~~---~SF~~i~~~~~~~~~~~~iP~vlVgNK~DL~~~rqV-~~~e~~~~a~-------~ 137 (169)
T cd01892 69 LLNDAELAACDVACLVYDSSDP---KSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQR-YEVQPDEFCR-------K 137 (169)
T ss_pred HHHHHHHCCCCEEEEEEECCCH---HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCC-CHHHHHHHHH-------H
T ss_conf 6658875469889999979987---899999999997005689818999886554203754-6776999999-------8
Q ss_pred CCHHH-HHHHHHCCEECCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 04266-88788659164674223348641355532102
Q gi|254780233|r 172 LDFPI-LYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDH 208 (624)
Q Consensus 172 ld~Pv-~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~ 208 (624)
T Consensus 138 ~~~~~~~e~SAktg-----------~nv~~~F~~la~~ 164 (169)
T cd01892 138 LGLPPPLHFSSKLG-----------DSSNELFTKLATA 164 (169)
T ss_pred CCCCCCEEEEEECC-----------CCHHHHHHHHHHH
T ss_conf 39996669983279-----------8989999999999