HHsearch alignment for GI: 254780233 and conserved domain: cd03221
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=92.56 E-value=0.8 Score=24.62 Aligned_cols=108 Identities=21% Similarity=0.317 Sum_probs=57.9
Q ss_pred CCCCCEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCC-CCCCCCEECCCCHHHHHCCCEEEEEEEEEEEC
Q ss_conf 31340465313468024314999854689877889999998396142-32200000388577987096064679999989
Q gi|254780233|r 2 FYDDGLFFIYGRLGYMQIRNIAIIAHVDHGKTTLVDELLKQSGVFRD-NQRVSERVMDCNDLEKERGITILAKVTSIVWN 80 (624)
Q Consensus 2 ~~~~~~~~~~~~~~~~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~-~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~ 80 (624)
T Consensus 9 ~y~~~~vl~~is~~i~~ge~~~l~G~NGsGKTTl~~~l---~G~~~~~~G~i-------------------------~~~ 60 (144)
T cd03221 9 TYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLI---AGELEPDEGIV-------------------------TWG 60 (144)
T ss_pred EECCEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHH---HCCCCCCCEEE-------------------------EEC
T ss_conf 99999999634899879999999989998499999998---48988985099-------------------------999
Q ss_pred C-EEEEEECCCCCCCC-HHHHHHHH----HHHCEEEEEEE-CCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 9-79999728987540-79999998----74217899997-6878864789999999972997899997
Q gi|254780233|r 81 D-VRINIVDTPGHADF-GGEVERIL----CMVESVVVLVD-AAEGPMPQTKFVVGKALKIGLRPIVVVN 142 (624)
Q Consensus 81 ~-~~iNiiDTPGH~DF-~gEVer~l----~~~DgaiLvVd-A~eGv~~QT~~vl~~A~~~~l~~IvvIN 142 (624)
T Consensus 61 ~~~~i~y~~-----QLSgGqkqr~~la~al~~~p~iliLDEPt~~LD~~~~~~i~~~l~~~~~tii~vs 124 (144)
T cd03221 61 STVKIGYFE-----QLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVS 124 (144)
T ss_pred CCCEEEEEH-----HCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 960899870-----0799999999999997259989999577555899999999999997099999996