HHsearch alignment for GI: 254780233 and conserved domain: cd04102
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=98.43 E-value=7.7e-06 Score=57.54 Aligned_cols=156 Identities=13% Similarity=0.182 Sum_probs=84.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEE-------CCEEEEEECCCCCCC
Q ss_conf 9998546898778899999983961423220000038857798709606467999998-------997999972898754
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVW-------NDVRINIVDTPGHAD 94 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~-------~~~~iNiiDTPGH~D 94 (624)
T Consensus 3 IlllGDsgVGKTSL~~~~~~~~--f~~~~~--~T----------iG~~v~~k~--~~~~~~~~~~k~~~l~lWDtaGqer 66 (202)
T cd04102 3 VLVVGDSGVGKSSLVHLICKNQ--VLGRPS--WT----------VGCSVDVKH--HTYKEGTPEEKTFFVELWDVGGSES 66 (202)
T ss_pred EEEECCCCCCHHHHHHHHHCCC--CCCCCC--CC----------EEEEEEEEE--EEECCCCCCCCEEEEEEEECCCCHH
T ss_conf 9999999989999999998398--888888--85----------036789999--9933787678389999998998775
Q ss_pred CHHHHHHHHHHHCEEEEEEECCCCCCHHHHH---HHHH-HH----------------------HCCCCEEEEEECCCCCC
Q ss_conf 0799999987421789999768788647899---9999-99----------------------72997899997543667
Q gi|254780233|r 95 FGGEVERILCMVESVVVLVDAAEGPMPQTKF---VVGK-AL----------------------KIGLRPIVVVNKVDRSD 148 (624)
Q Consensus 95 F~gEVer~l~~~DgaiLvVdA~eGv~~QT~~---vl~~-A~----------------------~~~l~~IvvINKiDr~~ 148 (624)
T Consensus 67 y~sl~~~yYr~a~gvILVyDvTnr---~SF~nL~~Wl~Eil~~~~~~~~~~~~~~~~~~~~~~~~~vPilvVGtK~D~~~ 143 (202)
T cd04102 67 VKSTRAVFYNQVNGIILVHDLTNR---KSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIP 143 (202)
T ss_pred HHHHHHHHHCCCCEEEEEEECCCH---HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECHHHCC
T ss_conf 776789975889899999989498---99986999999997536766654556665553334678975899976065243
Q ss_pred CCH---HHHHHHHHHH-HHHCCCCHHHCC---HHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 402---5689999988-862267301104---26688788659164674223348641355532102
Q gi|254780233|r 149 ARA---DEVINEVFDL-FSALDATDAQLD---FPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDH 208 (624)
Q Consensus 149 a~~---~~v~~ei~dl-f~~l~a~de~ld---~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~ 208 (624)
T Consensus 144 ~r~~~~~~~~~~-~~~ia~q~~~eei~~~c~~~~~~~~~~~~~-----------~kl~~ff~~vie~ 198 (202)
T cd04102 144 EKESSGNLVLTA-RGFVAEQGNAEEINLNCTNGRLLAAGSSDA-----------VKLSRFFDKVIEK 198 (202)
T ss_pred CCCCCCCHHHHH-HHHHHHHCCHHHHHHHCCCCCCCCCCCCCH-----------HHHHHHHHHHHHH
T ss_conf 435554235553-025777516678887456844003467551-----------6899999999888