HHsearch alignment for GI: 254780233 and conserved domain: cd04107
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.04 E-value=3.9e-09 Score=79.20 Aligned_cols=154 Identities=18% Similarity=0.304 Sum_probs=96.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEEC---CEEEEEECCCCCCCCHHH
Q ss_conf 99985468987788999999839614232200000388577987096064679999989---979999728987540799
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWN---DVRINIVDTPGHADFGGE 98 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~---~~~iNiiDTPGH~DF~gE 98 (624)
T Consensus 3 vvllGd~gVGKTsLi~rf~~--~~F~~~y~~--T----------ig~df~~k--~i~~~~~~~v~l~iwDtaGqe~~~~l 66 (201)
T cd04107 3 VLVIGDLGVGKTSIIKRYVH--GIFSQHYKA--T----------IGVDFALK--VIEWDPNTVVRLQLWDIAGQERFGGM 66 (201)
T ss_pred EEEECCCCCCHHHHHHHHHH--CCCCCCCCC--C----------CCEEEEEE--EEEECCCEEEEEEEEECCCCCCCCCC
T ss_conf 99999999789999999982--999998888--7----------56778998--99967981999999868998322200
Q ss_pred HHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHH--------HCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHH
Q ss_conf 999987421789999768788647899999999--------729978999975436674025689999988862267301
Q gi|254780233|r 99 VERILCMVESVVVLVDAAEGPMPQTKFVVGKAL--------KIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDA 170 (624)
Q Consensus 99 Ver~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~--------~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de 170 (624)
T Consensus 67 ~~~y~~~a~~~ilvydvt~~~Sf~~l~~w~~~i~~~~~~~~~~~ipiilVgNK~DL~~~~~-v~~ee~~~~a~~~----- 140 (201)
T cd04107 67 TRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLA-KDGEQMDQFCKEN----- 140 (201)
T ss_pred HHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCC-CCHHHHHHHHHHC-----
T ss_conf 3755557764799982798899998999999999986213789871899866556411256-8999999999977-----
Q ss_pred HCCHH-HHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 10426-68878865916467422334864135553210245
Q gi|254780233|r 171 QLDFP-ILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVP 210 (624)
Q Consensus 171 ~ld~P-v~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP 210 (624)
T Consensus 141 --~~~~~~EtSAktg-----------~nV~e~F~~l~~~i~ 168 (201)
T cd04107 141 --GFIGWFETSAKEG-----------INIEEAMRFLVKNIL 168 (201)
T ss_pred --CCCEEEEECCCCC-----------CCHHHHHHHHHHHHH
T ss_conf --9980999779999-----------498999999999998