HHsearch alignment for GI: 254780233 and conserved domain: cd04108

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.07  E-value=1.2e-09  Score=82.59  Aligned_cols=154  Identities=16%  Similarity=0.191  Sum_probs=94.8

Q ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHHH
Q ss_conf             99985468987788999999839614232200000388577987096064679999989979999728987540799999
Q gi|254780233|r   22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVER  101 (624)
Q Consensus        22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVer  101 (624)
T Consensus         3 ivlvGd~~VGKTsli~r~~--~~~f~~~y~~--T----------ig~d~~~k~~~v~~~~~~l~iwDtaGqe~f~~l~~~   68 (170)
T cd04108           3 VIVVGDLSVGKTCLINRFC--KDVFDKNYKA--T----------IGVDFEMERFEILGVPFSLQLWDTAGQERFKCIAST   68 (170)
T ss_pred             EEEECCCCCCHHHHHHHHH--CCCCCCCCCC--C----------CCEEEEEEEEEECCEEEEEEEEECCCCCCCCCCHHH
T ss_conf             9999989989899999996--3988997256--3----------450589999999999999999989999746644377


Q ss_pred             HHHHHCEEEEEEECCCCCCHHHHHHHH-HHHHCC----CCEEEEEECCCCCCCCHHHH-HHHHHHHHHHCCCCHHHCCHH
Q ss_conf             987421789999768788647899999-999729----97899997543667402568-999998886226730110426
Q gi|254780233|r  102 ILCMVESVVVLVDAAEGPMPQTKFVVG-KALKIG----LRPIVVVNKVDRSDARADEV-INEVFDLFSALDATDAQLDFP  175 (624)
Q Consensus       102 ~l~~~DgaiLvVdA~eGv~~QT~~vl~-~A~~~~----l~~IvvINKiDr~~a~~~~v-~~ei~dlf~~l~a~de~ld~P  175 (624)
T Consensus        69 y~r~a~~~ilvyDvt~~~Sf~~~~~w~~~~~~~~~~~~~~i~LvgNK~DL~~~~~~~~~~~~~~~~a~-------~~~~~  141 (170)
T cd04108          69 YYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAA-------EMQAE  141 (170)
T ss_pred             HHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEEEEHHHHHHHHH-------HCCCE
T ss_conf             73278758999978987899999999999998508999829999984137987557644899999998-------77987


Q ss_pred             HHHHHHHCCEECCCCCCCCCCCCHHHHHHHHC
Q ss_conf             68878865916467422334864135553210
Q gi|254780233|r  176 ILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVD  207 (624)
Q Consensus       176 v~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~  207 (624)
T Consensus       142 ~~E~SAk~g-----------~nV~e~F~~ia~  162 (170)
T cd04108         142 YWSVSALSG-----------ENVREFFFRVAA  162 (170)
T ss_pred             EEEECCCCC-----------CCHHHHHHHHHH
T ss_conf             999855788-----------187999999999