HHsearch alignment for GI: 254780233 and conserved domain: cd04109
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=98.81 E-value=7.2e-08 Score=70.88 Aligned_cols=154 Identities=18% Similarity=0.196 Sum_probs=98.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEEC-CEEEEEECCCCCCCCHHHHH
Q ss_conf 99985468987788999999839614232200000388577987096064679999989-97999972898754079999
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWN-DVRINIVDTPGHADFGGEVE 100 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~-~~~iNiiDTPGH~DF~gEVe 100 (624)
T Consensus 3 vvllGd~~VGKTSli~rf~~--~~F~~~y~~--T----------iG~d~~~k~i~i~~~~~v~l~iwDtaGqe~~~~~~~ 68 (215)
T cd04109 3 IVVLGDGAVGKTSLCRRFAK--EGFGKSYKQ--T----------IGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLD 68 (215)
T ss_pred EEEECCCCCCHHHHHHHHHH--CCCCCCCCC--C----------CCEEEEEEEEEECCCCEEEEEEEECCCCCCHHHHHH
T ss_conf 99999999709999999974--989887788--6----------557889999998799469999996998500237899
Q ss_pred HHHHHHCEEEEEEECCCCCCHHHH---HHHHH----HHHC-C-CC-EEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHH
Q ss_conf 998742178999976878864789---99999----9972-9-97-8999975436674025689999988862267301
Q gi|254780233|r 101 RILCMVESVVVLVDAAEGPMPQTK---FVVGK----ALKI-G-LR-PIVVVNKVDRSDARADEVINEVFDLFSALDATDA 170 (624)
Q Consensus 101 r~l~~~DgaiLvVdA~eGv~~QT~---~vl~~----A~~~-~-l~-~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de 170 (624)
T Consensus 69 ~y~~~a~~~ilVYDitn~---~SF~~l~~W~~~i~~~~~~~~~~~~iiLVGNK~DL~~~R~V-s~ee~~~-~A------~ 137 (215)
T cd04109 69 KYIYGAHAVFLVYDVTNS---QSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTV-KDDKHAR-FA------Q 137 (215)
T ss_pred HHHHHHCCEEEECCCCCH---HHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHCCC-CHHHHHH-HH------H
T ss_conf 999751513774147867---89998999999999985045778529999754542864776-9999999-99------9
Q ss_pred HCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf 10426688788659164674223348641355532102454
Q gi|254780233|r 171 QLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPP 211 (624)
Q Consensus 171 ~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~ 211 (624)
T Consensus 138 ~~g~~f~E~SAktg-----------~nV~e~F~~la~~i~~ 167 (215)
T cd04109 138 ANGMESCLVSAKTG-----------DRVNLLFQQLAAELLG 167 (215)
T ss_pred HCCCEEEEEECCCC-----------CCHHHHHHHHHHHHHC
T ss_conf 82998999838999-----------4989999999999976