HHsearch alignment for GI: 254780233 and conserved domain: cd04110
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.09 E-value=8.3e-10 Score=83.58 Aligned_cols=159 Identities=18% Similarity=0.241 Sum_probs=101.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHH
Q ss_conf 43149998546898778899999983961423220000038857798709606467999998997999972898754079
Q gi|254780233|r 18 QIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGG 97 (624)
Q Consensus 18 ~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~g 97 (624)
T Consensus 5 ~~~KIvlvGd~~VGKTSli~r~~--~~~F~~~~~~--T----------ig~d~~~k~v~i~~~~v~l~iwDtaGqe~~~~ 70 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFA--DNTFSGSYIT--T----------IGVDFKIRTVEINGERVKLQIWDTAGQERFRT 70 (199)
T ss_pred EEEEEEEECCCCCCHHHHHHHHH--CCCCCCCCCC--C----------CCEEEEEEEEEECCEEEEEEEEECCCCCCCCC
T ss_conf 57799999979988899999995--0999998689--7----------55587899999999999999998999812353
Q ss_pred HHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHH---CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCH
Q ss_conf 99999874217899997687886478999999997---299789999754366740256899999888622673011042
Q gi|254780233|r 98 EVERILCMVESVVVLVDAAEGPMPQTKFVVGKALK---IGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDF 174 (624)
Q Consensus 98 EVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~---~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~ 174 (624)
T Consensus 71 l~~~~~~~a~~~ilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~ilVGNK~Dl~~~r~v~-~~e~~~~a-------~~~~~ 142 (199)
T cd04110 71 ITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVE-TEDAYKFA-------GQMGI 142 (199)
T ss_pred CHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHCCCC-HHHHHHHH-------HHCCC
T ss_conf 52666424654238971798899999999999999759987579998855447546999-99999999-------98699
Q ss_pred HHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 66887886591646742233486413555321024
Q gi|254780233|r 175 PILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 175 Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
T Consensus 143 ~f~E~SAktg-----------~nV~e~F~~i~~~i 166 (199)
T cd04110 143 SLFETSAKEN-----------INVEEMFNCITELV 166 (199)
T ss_pred EEEEEECCCC-----------CCHHHHHHHHHHHH
T ss_conf 7999868999-----------29899999999999