HHsearch alignment for GI: 254780233 and conserved domain: cd04121
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.09 E-value=1.6e-09 Score=81.76 Aligned_cols=154 Identities=14% Similarity=0.119 Sum_probs=100.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHH
Q ss_conf 14999854689877889999998396142322000003885779870960646799999899799997289875407999
Q gi|254780233|r 20 RNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEV 99 (624)
Q Consensus 20 RNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEV 99 (624)
T Consensus 7 ~KivllGd~~VGKTsl~~r~~--~~~f~~~y~~------------Tig~~~~~k~~~~~~~~v~l~iwDtaGqe~f~~l~ 72 (189)
T cd04121 7 LKFLLVGDSDVGKGEILASLQ--DGSTESPYGY------------NMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIF 72 (189)
T ss_pred EEEEEECCCCCCHHHHHHHHH--CCCCCCCCCC------------CCCEEEEEEEEEECCEEEEEEEECCCCCCCHHHHH
T ss_conf 999999989978999999997--4997898687------------65379899999999999999998178862211678
Q ss_pred HHHHHHHCEEEEEEECCCCCCHHHH---HHHHHHH---HCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCC
Q ss_conf 9998742178999976878864789---9999999---729978999975436674025689999988862267301104
Q gi|254780233|r 100 ERILCMVESVVVLVDAAEGPMPQTK---FVVGKAL---KIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLD 173 (624)
Q Consensus 100 er~l~~~DgaiLvVdA~eGv~~QT~---~vl~~A~---~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld 173 (624)
T Consensus 73 ~~y~r~a~~~ilvyDvt~~---~Sf~~l~~w~~~i~~~~~~~p~iLVGNK~DL~~~r~-V~~ee~~~~A~-------~~~ 141 (189)
T cd04121 73 RSYSRGAQGIILVYDITNR---WSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQ-VATEQAQAYAE-------RNG 141 (189)
T ss_pred HHHHHHCCCEEEEECCCCH---HHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHCCC-CCHHHHHHHHH-------HCC
T ss_conf 9886633704898227988---999999999999999768987899613255033088-99999999999-------889
Q ss_pred HHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 266887886591646742233486413555321024
Q gi|254780233|r 174 FPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 174 ~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
T Consensus 142 ~~f~EtSAk~g-----------~nV~e~F~~l~~~i 166 (189)
T cd04121 142 MTFFEVSPLCN-----------FNITESFTELARIV 166 (189)
T ss_pred CEEEEECCCCC-----------CCHHHHHHHHHHHH
T ss_conf 99999600679-----------39899999999999