HHsearch alignment for GI: 254780233 and conserved domain: cd04136
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=98.94 E-value=6.6e-09 Score=77.68 Aligned_cols=149 Identities=18% Similarity=0.237 Sum_probs=95.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECC--EEEEEECCCCCCCCHHHH
Q ss_conf 999854689877889999998396142322000003885779870960646799999899--799997289875407999
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWND--VRINIVDTPGHADFGGEV 99 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~--~~iNiiDTPGH~DF~gEV 99 (624)
T Consensus 4 ivllGd~~VGKTsli~r~~~--~~f~~~y--~~Ti~~-----------~~~k--~i~~~~~~~~l~iwDtaG~e~~~~~~ 66 (163)
T cd04136 4 VVVLGSGGVGKSALTVQFVQ--GIFVEKY--DPTIED-----------SYRK--QIEVDGQQCMLEILDTAGTEQFTAMR 66 (163)
T ss_pred EEEECCCCCCHHHHHHHHHH--CCCCCCC--CCCCCC-----------EEEE--EEEECCEEEEEEECCCCCCHHHHHHH
T ss_conf 99989999889999999971--9598866--995420-----------6999--99999999999864576544555678
Q ss_pred HHHHHHHCEEEEEEECCCCCCHHHHH---HH-HHHHH----CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 99987421789999768788647899---99-99997----299789999754366740256899999888622673011
Q gi|254780233|r 100 ERILCMVESVVVLVDAAEGPMPQTKF---VV-GKALK----IGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQ 171 (624)
Q Consensus 100 er~l~~~DgaiLvVdA~eGv~~QT~~---vl-~~A~~----~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ 171 (624)
T Consensus 67 ~~y~~~a~~~ilvydvt~---~~Sf~~l~~~~~~i~~~~~~~~~piilVGnK~Dl~~~r~v-~~~~~~~~a-------~~ 135 (163)
T cd04136 67 DLYIKNGQGFVLVYSITS---QSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVV-SREEGQALA-------RQ 135 (163)
T ss_pred HHHHCCCCEEEEEECCCC---HHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHCCC-CHHHHHHHH-------HH
T ss_conf 988346876999704898---8999999999999998618888867876235472640789-999999999-------98
Q ss_pred CCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 04266887886591646742233486413555321024
Q gi|254780233|r 172 LDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 172 ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
T Consensus 136 ~~~~~~E~SAk~~-----------~nV~e~F~~l~~~i 162 (163)
T cd04136 136 WGCPFYETSAKSK-----------INVDEVFADLVRQI 162 (163)
T ss_pred CCCEEEEECCCCC-----------CCHHHHHHHHHHHH
T ss_conf 4998999744878-----------05899999999963