HHsearch alignment for GI: 254780233 and conserved domain: cd04157
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.41 E-value=5.3e-12 Score=98.01 Aligned_cols=154 Identities=18% Similarity=0.267 Sum_probs=100.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHH
Q ss_conf 49998546898778899999983961423220000038857798709606467999998997999972898754079999
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVE 100 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVe 100 (624)
T Consensus 1 ~Il~lGl~~sGKTtil~~l~~~~--~~-~~~~--------------~pT~G~~~~~~~~~~~~~~iwD~~G~~~~r~lw~ 63 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPEN--AQ-SQII--------------VPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWE 63 (162)
T ss_pred CEEEECCCCCCHHHHHHHHHCCC--CC-CCCC--------------CCCCCEEEEEEEECCEEEEEEECCCCCCCCHHHH
T ss_conf 99999999998899999997289--87-5641--------------6850757899983998899998588744205589
Q ss_pred HHHHHHCEEEEEEECCCCC-CHHHHHHHHHHHH------CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCC
Q ss_conf 9987421789999768788-6478999999997------29978999975436674025689999988862267301104
Q gi|254780233|r 101 RILCMVESVVVLVDAAEGP-MPQTKFVVGKALK------IGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLD 173 (624)
Q Consensus 101 r~l~~~DgaiLvVdA~eGv-~~QT~~vl~~A~~------~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld 173 (624)
T Consensus 64 ~y~~~~~~iI~VvDssd~~~~~~~~~~l~~ll~~~~~~~~~~PiLI~~NK~D~~~~~~~~ei~~~l~l-~~~~~----~~ 138 (162)
T cd04157 64 HYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGL-ENIKD----KP 138 (162)
T ss_pred HHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHCH-HHHCC----CC
T ss_conf 87056744899970763888999999999997176551798459999814778899999999988586-65248----96
Q ss_pred HHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHC
Q ss_conf 2668878865916467422334864135553210
Q gi|254780233|r 174 FPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVD 207 (624)
Q Consensus 174 ~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~ 207 (624)
T Consensus 139 ~~i~~~SA~tG-----------~Gi~e~f~WL~~ 161 (162)
T cd04157 139 WHIFASNALTG-----------EGLDEGVQWLQA 161 (162)
T ss_pred EEEEEEECCCC-----------CCHHHHHHHHHC
T ss_conf 49999789789-----------798999999865