HHsearch alignment for GI: 254780233 and conserved domain: cd04157

>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.41  E-value=5.3e-12  Score=98.01  Aligned_cols=154  Identities=18%  Similarity=0.267  Sum_probs=100.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHH
Q ss_conf             49998546898778899999983961423220000038857798709606467999998997999972898754079999
Q gi|254780233|r   21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVE  100 (624)
Q Consensus        21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVe  100 (624)
T Consensus         1 ~Il~lGl~~sGKTtil~~l~~~~--~~-~~~~--------------~pT~G~~~~~~~~~~~~~~iwD~~G~~~~r~lw~   63 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPEN--AQ-SQII--------------VPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWE   63 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHHCCC--CC-CCCC--------------CCCCCEEEEEEEECCEEEEEEECCCCCCCCHHHH
T ss_conf             99999999998899999997289--87-5641--------------6850757899983998899998588744205589


Q ss_pred             HHHHHHCEEEEEEECCCCC-CHHHHHHHHHHHH------CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCC
Q ss_conf             9987421789999768788-6478999999997------29978999975436674025689999988862267301104
Q gi|254780233|r  101 RILCMVESVVVLVDAAEGP-MPQTKFVVGKALK------IGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLD  173 (624)
Q Consensus       101 r~l~~~DgaiLvVdA~eGv-~~QT~~vl~~A~~------~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld  173 (624)
T Consensus        64 ~y~~~~~~iI~VvDssd~~~~~~~~~~l~~ll~~~~~~~~~~PiLI~~NK~D~~~~~~~~ei~~~l~l-~~~~~----~~  138 (162)
T cd04157          64 HYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGL-ENIKD----KP  138 (162)
T ss_pred             HHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHCH-HHHCC----CC
T ss_conf             87056744899970763888999999999997176551798459999814778899999999988586-65248----96


Q ss_pred             HHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHC
Q ss_conf             2668878865916467422334864135553210
Q gi|254780233|r  174 FPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVD  207 (624)
Q Consensus       174 ~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~  207 (624)
T Consensus       139 ~~i~~~SA~tG-----------~Gi~e~f~WL~~  161 (162)
T cd04157         139 WHIFASNALTG-----------EGLDEGVQWLQA  161 (162)
T ss_pred             EEEEEEECCCC-----------CCHHHHHHHHHC
T ss_conf             49999789789-----------798999999865