HHsearch alignment for GI: 254780233 and conserved domain: cd04160
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.56 E-value=8.4e-14 Score=109.84 Aligned_cols=159 Identities=21% Similarity=0.286 Sum_probs=107.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCC-CCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHH
Q ss_conf 999854689877889999998396142322-0000038857798709606467999998997999972898754079999
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQR-VSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVE 100 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~-v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVe 100 (624)
T Consensus 2 ivilG~~~~GKTsll~~l~---~~~~~~~~~~~~~----------~~~Tvg~~~~~i~~~~~~l~iwD~~Gqe~~~~l~~ 68 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLK---TLFSKYKGLPPSK----------ITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWD 68 (167)
T ss_pred EEEECCCCCCHHHHHHHHH---HCCCCCCCCCCCC----------CCCCCCEEEEEEEECCEEEEEEECCCCHHHHHHHH
T ss_conf 9999999988889999887---5036767776554----------03531326899998999999996898788878998
Q ss_pred HHHHHHCEEEEEEECCCC-CCHHHHHHHHHHH----HCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHH
Q ss_conf 998742178999976878-8647899999999----72997899997543667402568999998886226730110426
Q gi|254780233|r 101 RILCMVESVVVLVDAAEG-PMPQTKFVVGKAL----KIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFP 175 (624)
Q Consensus 101 r~l~~~DgaiLvVdA~eG-v~~QT~~vl~~A~----~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~P 175 (624)
T Consensus 69 ~y~~~a~~ii~VvD~sd~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~ei~~~~~~~~~~-~~--~~~~~ 145 (167)
T cd04160 69 KYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEE-IG--RRDCL 145 (167)
T ss_pred HHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHH-HC--CCCCE
T ss_conf 7428987899998668678899999999997511024896299997066766577899999999999998-54--69989
Q ss_pred HHHHHHHCCEECCCCCCCCCCCCHHHHHHHHC
Q ss_conf 68878865916467422334864135553210
Q gi|254780233|r 176 ILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVD 207 (624)
Q Consensus 176 v~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~ 207 (624)
T Consensus 146 ~~~~SAktG-----------~Gv~e~f~wL~~ 166 (167)
T cd04160 146 VLPVSALEG-----------TGVREGIEWLVE 166 (167)
T ss_pred EEEEECCCC-----------CCHHHHHHHHHC
T ss_conf 999887829-----------498999999965