HHsearch alignment for GI: 254780233 and conserved domain: cd04161
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.07 E-value=2.4e-09 Score=80.59 Aligned_cols=143 Identities=23% Similarity=0.253 Sum_probs=92.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHHH
Q ss_conf 99985468987788999999839614232200000388577987096064679999989979999728987540799999
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVER 101 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVer 101 (624)
T Consensus 2 ililGLd~aGKTTil~~l~--~~~~---~~~--------------~PT~G~~~~~~~~~~~~l~~~DlgG~~~~R~lW~~ 62 (167)
T cd04161 2 LLTVGLDNAGKTTLVSALQ--GEIP---KKV--------------APTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVN 62 (167)
T ss_pred EEEEEECCCCHHHHHHHHC--CCCC---CCC--------------CCCCCCCEEEEEECCEEEEEEECCCCHHHHHHHHH
T ss_conf 8999008998899999982--8998---765--------------08777317999989999999989987788899998
Q ss_pred HHHHHCEEEEEEECCCC-CCHHHHHHHHHHHH----CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHH
Q ss_conf 98742178999976878-86478999999997----29978999975436674025689999988862267301104266
Q gi|254780233|r 102 ILCMVESVVVLVDAAEG-PMPQTKFVVGKALK----IGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFPI 176 (624)
Q Consensus 102 ~l~~~DgaiLvVdA~eG-v~~QT~~vl~~A~~----~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~Pv 176 (624)
T Consensus 63 Y~~~~~gIIfVVDssD~~rl~eak~~L~~lL~~~~l~~~PiLIlaNKqDl~~a~~~~ei~~~L~L~-~l-~~~~~~~~~I 140 (167)
T cd04161 63 YYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLE-KL-VNENKSLCHI 140 (167)
T ss_pred HCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCCH-HH-CCCCCCEEEE
T ss_conf 734776579998557588999999999999658877899599998865761589999999881974-24-0899863799
Q ss_pred HHHHHHCCE
Q ss_conf 887886591
Q gi|254780233|r 177 LYGSGRFGW 185 (624)
Q Consensus 177 ~~~Sa~~G~ 185 (624)
T Consensus 141 ~~csA~tG~ 149 (167)
T cd04161 141 EPCSAIEGL 149 (167)
T ss_pred EECEEECCC
T ss_conf 957644488