HHsearch alignment for GI: 254780233 and conserved domain: cd04161

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.07  E-value=2.4e-09  Score=80.59  Aligned_cols=143  Identities=23%  Similarity=0.253  Sum_probs=92.3

Q ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHHH
Q ss_conf             99985468987788999999839614232200000388577987096064679999989979999728987540799999
Q gi|254780233|r   22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVER  101 (624)
Q Consensus        22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVer  101 (624)
T Consensus         2 ililGLd~aGKTTil~~l~--~~~~---~~~--------------~PT~G~~~~~~~~~~~~l~~~DlgG~~~~R~lW~~   62 (167)
T cd04161           2 LLTVGLDNAGKTTLVSALQ--GEIP---KKV--------------APTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVN   62 (167)
T ss_pred             EEEEEECCCCHHHHHHHHC--CCCC---CCC--------------CCCCCCCEEEEEECCEEEEEEECCCCHHHHHHHHH
T ss_conf             8999008998899999982--8998---765--------------08777317999989999999989987788899998


Q ss_pred             HHHHHCEEEEEEECCCC-CCHHHHHHHHHHHH----CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHH
Q ss_conf             98742178999976878-86478999999997----29978999975436674025689999988862267301104266
Q gi|254780233|r  102 ILCMVESVVVLVDAAEG-PMPQTKFVVGKALK----IGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFPI  176 (624)
Q Consensus       102 ~l~~~DgaiLvVdA~eG-v~~QT~~vl~~A~~----~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~Pv  176 (624)
T Consensus        63 Y~~~~~gIIfVVDssD~~rl~eak~~L~~lL~~~~l~~~PiLIlaNKqDl~~a~~~~ei~~~L~L~-~l-~~~~~~~~~I  140 (167)
T cd04161          63 YYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLE-KL-VNENKSLCHI  140 (167)
T ss_pred             HCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCCH-HH-CCCCCCEEEE
T ss_conf             734776579998557588999999999999658877899599998865761589999999881974-24-0899863799


Q ss_pred             HHHHHHCCE
Q ss_conf             887886591
Q gi|254780233|r  177 LYGSGRFGW  185 (624)
Q Consensus       177 ~~~Sa~~G~  185 (624)
T Consensus       141 ~~csA~tG~  149 (167)
T cd04161         141 EPCSAIEGL  149 (167)
T ss_pred             EECEEECCC
T ss_conf             957644488