HHsearch alignment for GI: 254780233 and conserved domain: cd04167
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=100.00 E-value=0 Score=404.86 Aligned_cols=190 Identities=34% Similarity=0.529 Sum_probs=169.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCC---CEECCCCHHHHHCCCEEEEEEEEEEECC-----EEEEEECCCC
Q ss_conf 1499985468987788999999839614232200---0003885779870960646799999899-----7999972898
Q gi|254780233|r 20 RNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVS---ERVMDCNDLEKERGITILAKVTSIVWND-----VRINIVDTPG 91 (624)
Q Consensus 20 RNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~---~~vmD~~~~EreRGITI~a~~~~~~~~~-----~~iNiiDTPG 91 (624)
T Consensus 1 RNvaiigHvdhGKTTL~d~Ll~~t~~~~~~~~~~~~~~~~~D~~~~E~eRgiTI~s~~~sl~~~~~~~k~~~inlIDTPG 80 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCEECCEEEEEEECCCCCEEEEEEEECCC
T ss_conf 95999827898989999999997344555404442113575164665420355861459999825667505787788987
Q ss_pred CCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC-------CCC----CHHHHHHHHHH
Q ss_conf 7540799999987421789999768788647899999999729978999975436-------674----02568999998
Q gi|254780233|r 92 HADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDR-------SDA----RADEVINEVFD 160 (624)
Q Consensus 92 H~DF~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr-------~~a----~~~~v~~ei~d 160 (624)
T Consensus 81 H~dF~~ev~~al~~~DgailVVDa~eGv~~qT~~~l~~a~~~~l~~ilviNKiDRLi~el~l~p~day~~~~~ii~~vn~ 160 (213)
T cd04167 81 HVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRLILELKLPPNDAYFKLRHIIDEVNN 160 (213)
T ss_pred CHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 24179999988863776799998788875779999999998699989999882343144069989999989999999999
Q ss_pred HHHHCCCCHHHCCHH----HHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCCC
Q ss_conf 886226730110426----6887886591646742233486413555321024542
Q gi|254780233|r 161 LFSALDATDAQLDFP----ILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPP 212 (624)
Q Consensus 161 lf~~l~a~de~ld~P----v~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~P 212 (624)
T Consensus 161 ~i~~~~~~~~~~~~p~~~nV~f~Sa~~gw~ftl~---~fa~~y~l~d~i~~~ip~P 213 (213)
T cd04167 161 IIASFSTTLSFLFSPENGNVCFASSKFGFCFTLE---SFAKKYGLVDSIVSNIPSP 213 (213)
T ss_pred HHHHHCCCCCCEECCCCCCEEEEEECCCEEECCC---CHHHHHHHHHHHHHHCCCC
T ss_conf 9997078735165688796999970005212362---3211689999999638898