HHsearch alignment for GI: 254780233 and conserved domain: cd04167

>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=100.00  E-value=0  Score=404.86  Aligned_cols=190  Identities=34%  Similarity=0.529  Sum_probs=169.5

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCC---CEECCCCHHHHHCCCEEEEEEEEEEECC-----EEEEEECCCC
Q ss_conf             1499985468987788999999839614232200---0003885779870960646799999899-----7999972898
Q gi|254780233|r   20 RNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVS---ERVMDCNDLEKERGITILAKVTSIVWND-----VRINIVDTPG   91 (624)
Q Consensus        20 RNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~---~~vmD~~~~EreRGITI~a~~~~~~~~~-----~~iNiiDTPG   91 (624)
T Consensus         1 RNvaiigHvdhGKTTL~d~Ll~~t~~~~~~~~~~~~~~~~~D~~~~E~eRgiTI~s~~~sl~~~~~~~k~~~inlIDTPG   80 (213)
T cd04167           1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG   80 (213)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCEECCEEEEEEECCCCCEEEEEEEECCC
T ss_conf             95999827898989999999997344555404442113575164665420355861459999825667505787788987


Q ss_pred             CCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC-------CCC----CHHHHHHHHHH
Q ss_conf             7540799999987421789999768788647899999999729978999975436-------674----02568999998
Q gi|254780233|r   92 HADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDR-------SDA----RADEVINEVFD  160 (624)
Q Consensus        92 H~DF~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr-------~~a----~~~~v~~ei~d  160 (624)
T Consensus        81 H~dF~~ev~~al~~~DgailVVDa~eGv~~qT~~~l~~a~~~~l~~ilviNKiDRLi~el~l~p~day~~~~~ii~~vn~  160 (213)
T cd04167          81 HVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRLILELKLPPNDAYFKLRHIIDEVNN  160 (213)
T ss_pred             CHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf             24179999988863776799998788875779999999998699989999882343144069989999989999999999


Q ss_pred             HHHHCCCCHHHCCHH----HHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCCC
Q ss_conf             886226730110426----6887886591646742233486413555321024542
Q gi|254780233|r  161 LFSALDATDAQLDFP----ILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPP  212 (624)
Q Consensus       161 lf~~l~a~de~ld~P----v~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~P  212 (624)
T Consensus       161 ~i~~~~~~~~~~~~p~~~nV~f~Sa~~gw~ftl~---~fa~~y~l~d~i~~~ip~P  213 (213)
T cd04167         161 IIASFSTTLSFLFSPENGNVCFASSKFGFCFTLE---SFAKKYGLVDSIVSNIPSP  213 (213)
T ss_pred             HHHHHCCCCCCEECCCCCCEEEEEECCCEEECCC---CHHHHHHHHHHHHHHCCCC
T ss_conf             9997078735165688796999970005212362---3211689999999638898