Query gi|254780233|ref|YP_003064646.1| GTP-binding protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 624
No_of_seqs 317 out of 4515
Neff 6.0
Searched_HMMs 39220
Date Tue May 24 03:11:13 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780233.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01394 TypA_BipA GTP-bindin 100.0 0 0 2032.3 40.0 595 19-613 1-609 (609)
2 COG1217 TypA Predicted membran 100.0 0 0 1703.7 42.7 601 16-618 2-603 (603)
3 PRK10218 GTP-binding protein; 100.0 0 0 1658.6 52.0 605 15-621 1-607 (607)
4 TIGR01393 lepA GTP-binding pro 100.0 0 0 1007.2 25.5 538 17-619 1-582 (598)
5 KOG0462 consensus 100.0 0 0 986.3 30.6 556 15-603 56-641 (650)
6 PRK05433 GTP-binding protein L 100.0 0 0 929.2 32.3 543 14-619 2-583 (601)
7 PRK00007 elongation factor G; 100.0 0 0 880.2 40.5 457 14-495 5-685 (693)
8 PRK13351 elongation factor G; 100.0 0 0 853.9 43.1 460 13-496 2-682 (687)
9 PRK12740 elongation factor G; 100.0 0 0 850.8 39.0 448 25-497 1-667 (670)
10 PRK12739 elongation factor G; 100.0 0 0 835.1 41.1 460 12-496 3-684 (693)
11 COG0480 FusA Translation elong 100.0 0 0 837.4 39.1 458 13-494 4-683 (697)
12 PRK07560 elongation factor EF- 100.0 0 0 823.9 39.6 467 14-494 15-703 (730)
13 TIGR00484 EF-G translation elo 100.0 0 0 849.4 15.2 457 13-494 4-695 (705)
14 COG0481 LepA Membrane GTPase L 100.0 0 0 802.5 30.2 545 12-619 2-585 (603)
15 KOG0465 consensus 100.0 0 0 773.8 24.5 458 12-496 32-715 (721)
16 PRK00741 prfC peptide chain re 100.0 0 0 666.9 32.8 409 15-468 6-512 (526)
17 TIGR00490 aEF-2 translation el 100.0 0 0 611.3 28.9 467 14-495 14-708 (724)
18 KOG0464 consensus 100.0 0 0 589.5 17.2 453 15-491 33-738 (753)
19 KOG0469 consensus 100.0 0 0 530.0 22.4 472 14-495 14-809 (842)
20 COG4108 PrfC Peptide chain rel 100.0 0 0 446.4 21.3 354 17-397 10-460 (528)
21 cd01891 TypA_BipA TypA (tyrosi 100.0 0 0 449.8 18.3 194 18-212 1-194 (194)
22 KOG0468 consensus 100.0 0 0 428.1 25.0 470 14-494 123-910 (971)
23 KOG0467 consensus 100.0 0 0 424.1 20.2 467 13-490 3-828 (887)
24 cd04170 EF-G_bact Elongation f 100.0 0 0 411.9 15.3 142 21-162 1-144 (268)
25 cd04169 RF3 RF3 subfamily. Pe 100.0 0 0 411.3 15.5 145 18-162 1-151 (267)
26 cd01885 EF2 EF2 (for archaea a 100.0 0 0 405.2 16.2 190 20-212 1-222 (222)
27 cd04167 Snu114p Snu114p subfam 100.0 0 0 404.9 14.8 190 20-212 1-213 (213)
28 cd01886 EF-G Elongation factor 100.0 0 0 401.1 15.8 142 21-162 1-144 (270)
29 TIGR00503 prfC peptide chain r 100.0 0 0 401.9 11.7 353 17-396 9-461 (530)
30 cd04168 TetM_like Tet(M)-like 100.0 0 0 392.8 15.8 180 21-211 1-236 (237)
31 cd01884 EF_Tu EF-Tu subfamily. 100.0 0 0 381.5 14.8 190 20-212 3-195 (195)
32 cd01890 LepA LepA subfamily. 100.0 0 0 368.1 17.1 174 20-212 1-179 (179)
33 PRK12317 elongation factor 1-a 100.0 0 0 358.0 21.5 279 20-310 8-314 (426)
34 PRK12736 elongation factor Tu; 100.0 0 0 360.2 16.7 281 20-311 13-301 (394)
35 PRK05124 cysN sulfate adenylyl 100.0 0 0 351.9 22.9 283 15-310 23-331 (475)
36 PTZ00336 elongation factor 1-a 100.0 0 0 350.7 22.1 276 21-308 9-319 (449)
37 CHL00071 tufA elongation facto 100.0 0 0 353.8 19.7 283 21-311 14-311 (409)
38 PRK00049 elongation factor Tu; 100.0 0 0 353.1 19.2 282 21-311 14-304 (397)
39 cd00881 GTP_translation_factor 100.0 0 0 353.3 16.9 181 21-212 1-189 (189)
40 PRK12735 elongation factor Tu; 100.0 0 0 347.6 19.0 281 20-309 13-301 (396)
41 PTZ00141 elongation factor 1 a 100.0 0 0 339.7 20.4 277 20-308 8-317 (443)
42 COG5256 TEF1 Translation elong 100.0 0 0 337.0 21.1 283 20-313 8-322 (428)
43 PRK04000 translation initiatio 100.0 0 0 340.8 17.2 282 21-341 10-345 (410)
44 PRK05506 bifunctional sulfate 100.0 0 0 331.2 21.5 279 17-309 5-309 (613)
45 TIGR00483 EF-1_alpha translati 100.0 0 0 335.4 12.7 273 19-308 7-330 (445)
46 cd01889 SelB_euk SelB subfamil 100.0 0 0 323.1 13.8 169 21-213 2-189 (192)
47 cd01883 EF1_alpha Eukaryotic e 100.0 1.4E-45 0 317.9 16.3 189 21-213 1-219 (219)
48 PRK10512 selenocysteinyl-tRNA- 100.0 1.4E-44 0 311.8 19.3 254 22-311 3-264 (615)
49 KOG0460 consensus 100.0 1.4E-45 0 319.6 12.7 293 12-322 46-356 (449)
50 COG0050 TufB GTPases - transla 100.0 4.2E-45 0 314.9 15.4 290 20-323 13-313 (394)
51 pfam00009 GTP_EFTU Elongation 100.0 8.4E-45 0 313.6 15.5 182 17-211 1-185 (185)
52 CHL00189 infB translation init 100.0 2.9E-44 0 309.7 16.2 250 21-308 274-531 (770)
53 PRK12312 infB translation init 100.0 1.1E-43 0 305.9 16.4 249 21-308 119-372 (610)
54 PRK05306 infB translation init 100.0 4.5E-43 0 302.0 17.4 416 21-494 343-827 (839)
55 PTZ00327 eukaryotic translatio 100.0 3.8E-42 0 295.9 18.5 262 19-309 37-356 (460)
56 TIGR00475 selB selenocysteine- 100.0 3.7E-43 0 302.6 13.0 257 21-310 2-272 (627)
57 cd04166 CysN_ATPS CysN_ATPS su 100.0 3.3E-42 0 296.3 16.5 187 21-213 1-208 (208)
58 KOG1145 consensus 100.0 1.3E-40 2.8E-45 285.9 14.4 249 21-308 155-409 (683)
59 TIGR02034 CysN sulfate adenyly 100.0 1.7E-40 4.2E-45 285.1 12.8 271 22-308 3-305 (411)
60 PRK04004 translation initiatio 100.0 4.1E-38 1.1E-42 269.4 16.2 230 17-276 1-287 (592)
61 cd01888 eIF2_gamma eIF2-gamma 100.0 3.3E-39 8.4E-44 276.6 10.2 165 21-213 2-202 (203)
62 COG2895 CysN GTPases - Sulfate 100.0 1.4E-37 3.5E-42 266.0 17.5 283 19-318 6-316 (431)
63 COG0532 InfB Translation initi 100.0 3.5E-37 8.8E-42 263.4 15.6 252 21-310 7-265 (509)
64 KOG0458 consensus 100.0 1E-36 2.7E-41 260.2 17.6 284 16-310 174-494 (603)
65 TIGR00485 EF-Tu translation el 100.0 5.9E-37 1.5E-41 261.9 11.3 284 20-317 13-307 (394)
66 COG3276 SelB Selenocysteine-sp 100.0 3.6E-34 9.2E-39 243.6 16.5 250 21-309 2-258 (447)
67 cd04171 SelB SelB subfamily. 100.0 5.3E-34 1.3E-38 242.5 13.7 158 22-207 3-163 (164)
68 cd01887 IF2_eIF5B IF2/eIF5B (i 100.0 1.2E-31 3.1E-36 226.9 13.1 160 21-208 2-164 (168)
69 COG5257 GCD11 Translation init 100.0 5E-31 1.3E-35 222.9 13.7 265 20-315 11-324 (415)
70 KOG0459 consensus 100.0 1.3E-31 3.3E-36 226.8 9.1 282 17-311 77-394 (501)
71 COG5258 GTPBP1 GTPase [General 100.0 2.5E-29 6.5E-34 211.7 12.0 280 13-315 112-445 (527)
72 KOG0461 consensus 100.0 3.6E-28 9.3E-33 204.1 11.1 251 16-291 5-267 (522)
73 cd04165 GTPBP1_like GTPBP1-lik 100.0 9.9E-28 2.5E-32 201.3 12.2 176 22-212 2-224 (224)
74 TIGR00487 IF-2 translation ini 99.9 1.9E-24 4.9E-29 179.7 13.5 252 17-306 88-345 (594)
75 cd03710 BipA_TypA_C BipA_TypA_ 99.9 3.1E-24 7.8E-29 178.3 8.2 79 413-491 1-79 (79)
76 cd03691 BipA_TypA_II BipA_TypA 99.9 4.2E-23 1.1E-27 170.9 6.2 86 219-305 1-86 (86)
77 KOG1144 consensus 99.9 1.9E-21 4.7E-26 160.1 9.5 233 16-277 470-756 (1064)
78 cd03709 lepA_C lepA_C: This fa 99.8 3.1E-21 7.8E-26 158.7 8.5 78 413-490 1-79 (80)
79 smart00838 EFG_C Elongation fa 99.8 3.7E-21 9.3E-26 158.2 8.9 84 411-495 1-84 (85)
80 TIGR00491 aIF-2 translation in 99.8 2.3E-21 5.8E-26 159.5 7.2 237 5-276 541-834 (1145)
81 pfam00679 EFG_C Elongation fac 99.8 7.7E-21 2E-25 156.0 9.2 88 410-497 1-88 (89)
82 cd04097 mtEFG1_C mtEFG1_C: C-t 99.8 6.2E-21 1.6E-25 156.7 8.7 78 413-491 1-78 (78)
83 cd03711 Tet_C Tet_C: C-terminu 99.8 1E-19 2.6E-24 148.6 8.9 78 413-491 1-78 (78)
84 cd01895 EngA2 EngA2 subfamily. 99.8 1.8E-18 4.7E-23 140.4 14.2 156 21-208 4-173 (174)
85 cd03713 EFG_mtEFG_C EFG_mtEFG_ 99.8 2.6E-19 6.5E-24 146.0 8.5 78 413-491 1-78 (78)
86 KOG0466 consensus 99.8 1.2E-19 3.1E-24 148.2 6.6 241 20-292 39-337 (466)
87 cd04088 EFG_mtEFG_II EFG_mtEFG 99.8 3.4E-19 8.6E-24 145.2 5.4 83 219-305 1-83 (83)
88 cd04096 eEF2_snRNP_like_C eEF2 99.8 1.5E-18 3.8E-23 141.0 8.5 79 413-491 1-80 (80)
89 cd04092 mtEFG2_II_like mtEFG2_ 99.8 3.6E-19 9.2E-24 145.0 5.3 83 219-305 1-83 (83)
90 cd01514 Elongation_Factor_C El 99.8 1.5E-18 3.9E-23 140.9 8.1 79 413-491 1-79 (79)
91 cd04091 mtEFG1_II_like mtEFG1_ 99.7 9.8E-19 2.5E-23 142.2 4.8 81 219-305 1-81 (81)
92 PRK03003 engA GTP-binding prot 99.7 2.4E-16 6E-21 126.6 15.9 158 18-213 37-202 (474)
93 cd03690 Tet_II Tet_II: This su 99.7 4.3E-18 1.1E-22 138.0 4.8 85 216-305 1-85 (85)
94 cd01894 EngA1 EngA1 subfamily. 99.7 1.7E-16 4.4E-21 127.5 12.8 149 23-209 1-157 (157)
95 cd00880 Era_like Era (E. coli 99.7 1.4E-16 3.5E-21 128.1 12.0 154 24-209 1-163 (163)
96 cd04163 Era Era subfamily. Er 99.7 3E-16 7.7E-21 125.9 13.7 157 20-209 4-168 (168)
97 PRK00089 era GTP-binding prote 99.7 4.8E-16 1.2E-20 124.5 14.7 163 15-211 2-174 (296)
98 PRK09518 bifunctional cytidyla 99.7 1.7E-15 4.4E-20 120.9 16.7 160 15-212 275-442 (714)
99 COG1160 Predicted GTPases [Gen 99.7 2E-15 5E-20 120.5 16.9 343 20-436 4-371 (444)
100 TIGR03594 GTPase_EngA ribosome 99.7 4.4E-16 1.1E-20 124.8 13.5 156 22-215 2-165 (429)
101 cd04098 eEF2_C_snRNP eEF2_C_sn 99.7 3.2E-17 8.3E-22 132.2 7.5 79 413-491 1-80 (80)
102 PRK09518 bifunctional cytidyla 99.7 4.8E-16 1.2E-20 124.5 13.4 158 17-206 450-619 (714)
103 PRK03003 engA GTP-binding prot 99.7 6.8E-16 1.7E-20 123.5 13.6 156 19-206 211-378 (474)
104 PRK00093 engA GTP-binding prot 99.7 9E-16 2.3E-20 122.8 13.7 157 21-215 3-168 (438)
105 cd01876 YihA_EngB The YihA (En 99.7 4.1E-16 1E-20 125.0 11.8 155 22-209 2-170 (170)
106 TIGR03594 GTPase_EngA ribosome 99.7 8.9E-16 2.3E-20 122.8 13.2 155 20-206 173-340 (429)
107 PRK00093 engA GTP-binding prot 99.7 1.2E-15 3E-20 122.0 13.4 156 18-206 172-341 (438)
108 cd03689 RF3_II RF3_II: this su 99.7 6.4E-17 1.6E-21 130.3 4.0 81 221-305 1-84 (85)
109 PRK00454 engB GTPase EngB; Rev 99.6 3.9E-15 9.8E-20 118.6 12.0 160 17-209 22-195 (196)
110 COG1160 Predicted GTPases [Gen 99.6 6.3E-15 1.6E-19 117.2 11.9 156 20-207 179-348 (444)
111 pfam02421 FeoB_N Ferrous iron 99.6 5.2E-15 1.3E-19 117.7 11.4 154 21-212 1-162 (188)
112 KOG0052 consensus 99.6 7.2E-17 1.8E-21 129.9 1.8 140 14-156 1-169 (391)
113 cd04164 trmE TrmE (MnmE, ThdF, 99.6 7.3E-15 1.9E-19 116.8 10.1 145 21-208 3-155 (157)
114 cd04154 Arl2 Arl2 subfamily. 99.6 2.3E-14 5.9E-19 113.5 12.3 160 12-207 8-172 (173)
115 pfam00025 Arf ADP-ribosylation 99.6 4.8E-14 1.2E-18 111.4 13.2 155 20-209 15-174 (174)
116 cd04155 Arl3 Arl3 subfamily. 99.6 3.6E-14 9.1E-19 112.3 12.0 158 15-207 10-172 (173)
117 COG2229 Predicted GTPase [Gene 99.6 7.8E-14 2E-18 110.0 12.7 168 21-213 12-182 (187)
118 cd04160 Arfrp1 Arfrp1 subfamil 99.6 8.4E-14 2.1E-18 109.8 12.3 159 22-207 2-166 (167)
119 KOG0463 consensus 99.6 1.6E-14 4.2E-19 114.5 8.5 271 13-308 128-457 (641)
120 pfam10662 PduV-EutP Ethanolami 99.6 2.5E-14 6.3E-19 113.3 8.9 135 22-206 4-142 (143)
121 TIGR03598 GTPase_YsxC ribosome 99.5 7.9E-14 2E-18 110.0 10.5 146 17-184 16-175 (179)
122 cd00878 Arf_Arl Arf (ADP-ribos 99.5 1.9E-13 4.8E-18 107.5 10.9 151 22-207 2-157 (158)
123 cd01898 Obg Obg subfamily. Th 99.5 7.4E-13 1.9E-17 103.6 13.1 153 21-209 2-170 (170)
124 cd01897 NOG NOG1 is a nucleola 99.5 7.3E-13 1.9E-17 103.6 12.7 152 21-209 2-167 (168)
125 PRK04213 GTP-binding protein; 99.5 1.2E-12 3.1E-17 102.2 12.9 161 21-215 3-189 (195)
126 cd01879 FeoB Ferrous iron tran 99.5 5.2E-13 1.3E-17 104.6 10.9 147 24-209 1-156 (158)
127 cd03700 eEF2_snRNP_like_II EF2 99.5 8.9E-14 2.3E-18 109.6 5.7 85 221-305 3-93 (93)
128 cd01878 HflX HflX subfamily. 99.4 1.3E-12 3.2E-17 102.1 10.3 152 18-209 40-204 (204)
129 KOG1143 consensus 99.4 2.6E-12 6.5E-17 100.1 11.4 283 18-331 167-505 (591)
130 TIGR00231 small_GTP small GTP- 99.4 3.4E-13 8.7E-18 105.8 6.7 135 18-155 2-147 (186)
131 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.4 3.5E-12 8.9E-17 99.2 11.8 154 18-207 14-173 (174)
132 COG1159 Era GTPase [General fu 99.4 6.5E-12 1.7E-16 97.4 13.0 160 17-211 4-173 (298)
133 cd04149 Arf6 Arf6 subfamily. 99.4 4.7E-12 1.2E-16 98.4 12.0 153 20-207 10-167 (168)
134 PRK09554 feoB ferrous iron tra 99.4 1.4E-12 3.7E-17 101.7 9.4 155 17-210 2-168 (772)
135 cd04157 Arl6 Arl6 subfamily. 99.4 5.3E-12 1.3E-16 98.0 12.0 154 21-207 1-161 (162)
136 cd04159 Arl10_like Arl10-like 99.4 4.8E-12 1.2E-16 98.3 11.4 152 22-208 2-159 (159)
137 cd04150 Arf1_5_like Arf1-Arf5- 99.4 6.4E-12 1.6E-16 97.5 11.6 153 21-208 2-159 (159)
138 cd04151 Arl1 Arl1 subfamily. 99.4 8.7E-12 2.2E-16 96.6 11.8 151 22-207 2-157 (158)
139 cd00882 Ras_like_GTPase Ras-li 99.4 4.9E-12 1.3E-16 98.2 10.1 149 24-207 1-157 (157)
140 PTZ00133 ADP-ribosylation fact 99.4 8.3E-12 2.1E-16 96.7 11.1 158 16-209 15-177 (182)
141 smart00177 ARF ARF-like small 99.4 1.7E-11 4.4E-16 94.7 11.8 158 16-209 11-173 (175)
142 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.3 1.5E-11 3.7E-16 95.1 10.8 159 21-209 5-169 (183)
143 cd01881 Obg_like The Obg-like 99.3 2.2E-11 5.5E-16 94.0 11.4 151 24-209 1-176 (176)
144 cd04156 ARLTS1 ARLTS1 subfamil 99.3 4.6E-11 1.2E-15 91.8 12.4 151 22-207 2-159 (160)
145 cd04158 ARD1 ARD1 subfamily. 99.3 6.9E-11 1.7E-15 90.7 11.5 154 22-209 2-160 (169)
146 cd03699 lepA_II lepA_II: This 99.3 3.2E-12 8.2E-17 99.4 4.7 81 219-304 1-85 (86)
147 cd01896 DRG The developmentall 99.3 1.2E-10 3.1E-15 89.1 12.3 146 21-209 2-225 (233)
148 cd00879 Sar1 Sar1 subfamily. 99.3 1E-10 2.6E-15 89.6 11.4 162 17-208 17-189 (190)
149 pfam00071 Ras Ras family. Incl 99.3 5E-11 1.3E-15 91.6 9.7 150 22-209 2-160 (162)
150 pfam01926 MMR_HSR1 GTPase of u 99.2 1E-10 2.6E-15 89.5 10.8 98 31-143 1-106 (106)
151 COG0370 FeoB Fe2+ transport sy 99.2 1.1E-10 2.8E-15 89.3 9.9 152 21-213 5-167 (653)
152 smart00178 SAR Sar1p-like memb 99.2 3.4E-10 8.6E-15 86.2 12.2 162 18-209 16-184 (184)
153 cd01863 Rab18 Rab18 subfamily. 99.2 2.8E-10 7.1E-15 86.7 11.1 154 22-209 3-161 (161)
154 PRK05291 trmE tRNA modificatio 99.2 3.1E-10 8E-15 86.4 11.1 142 21-210 218-367 (445)
155 cd00876 Ras Ras family. The R 99.2 5.2E-10 1.3E-14 84.9 12.1 152 22-209 2-160 (160)
156 cd04124 RabL2 RabL2 subfamily. 99.2 3.7E-10 9.5E-15 85.9 11.1 149 22-209 3-157 (161)
157 cd04123 Rab21 Rab21 subfamily. 99.2 1.3E-10 3.2E-15 89.0 8.6 156 21-209 2-161 (162)
158 cd01860 Rab5_related Rab5-rela 99.2 4.3E-10 1.1E-14 85.4 11.2 157 21-210 3-163 (163)
159 cd04090 eEF2_II_snRNP Loc2 eEF 99.2 3.1E-11 7.8E-16 93.0 5.3 86 220-305 2-94 (94)
160 cd00154 Rab Rab family. Rab G 99.2 5.5E-10 1.4E-14 84.8 11.3 149 21-207 2-159 (159)
161 cd04112 Rab26 Rab26 subfamily. 99.2 4E-10 1E-14 85.7 10.0 156 21-211 2-164 (191)
162 cd04116 Rab9 Rab9 subfamily. 99.1 3.7E-10 9.4E-15 85.9 9.6 156 18-209 4-170 (170)
163 cd04128 Spg1 Spg1p. Spg1p (se 99.1 1E-09 2.6E-14 83.0 11.4 153 22-209 3-165 (182)
164 cd01867 Rab8_Rab10_Rab13_like 99.1 6.7E-10 1.7E-14 84.2 10.5 156 21-209 5-164 (167)
165 smart00175 RAB Rab subfamily o 99.1 5.1E-10 1.3E-14 85.0 9.4 153 22-209 3-161 (164)
166 cd04119 RJL RJL (RabJ-Like) su 99.1 1.5E-09 3.8E-14 81.9 11.6 153 22-209 3-166 (168)
167 cd04127 Rab27A Rab27a subfamil 99.1 1.2E-09 3E-14 82.6 10.9 153 21-209 6-176 (180)
168 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.1 1E-09 2.6E-14 83.0 10.3 156 21-209 4-163 (166)
169 cd01862 Rab7 Rab7 subfamily. 99.1 1.5E-09 3.9E-14 81.8 11.1 152 22-208 3-165 (172)
170 cd04139 RalA_RalB RalA/RalB su 99.1 1E-09 2.5E-14 83.1 10.1 152 21-209 2-161 (164)
171 cd04101 RabL4 RabL4 (Rab-like4 99.1 3.3E-09 8.5E-14 79.6 12.7 155 22-208 3-162 (164)
172 cd04113 Rab4 Rab4 subfamily. 99.1 1.2E-09 3E-14 82.6 10.4 151 22-208 3-160 (161)
173 cd00877 Ran Ran (Ras-related n 99.1 1.7E-09 4.4E-14 81.5 11.1 154 22-210 3-159 (166)
174 PTZ00132 GTP-binding nuclear p 99.1 8.2E-10 2.1E-14 83.6 9.3 151 21-209 8-164 (209)
175 TIGR00437 feoB ferrous iron tr 99.1 1.1E-10 2.7E-15 89.4 4.8 137 29-206 4-152 (733)
176 cd04162 Arl9_Arfrp2_like Arl9/ 99.1 2.8E-09 7.2E-14 80.1 12.0 119 22-158 2-123 (164)
177 cd04110 Rab35 Rab35 subfamily. 99.1 8.3E-10 2.1E-14 83.6 9.2 159 18-209 5-166 (199)
178 cd04121 Rab40 Rab40 subfamily. 99.1 1.6E-09 4E-14 81.8 10.6 154 20-209 7-166 (189)
179 cd04147 Ras_dva Ras-dva subfam 99.1 1.7E-09 4.2E-14 81.6 10.7 154 22-211 2-164 (198)
180 cd04120 Rab12 Rab12 subfamily. 99.1 1.6E-09 4E-14 81.7 10.6 156 22-209 3-162 (202)
181 smart00173 RAS Ras subfamily o 99.1 2E-09 5.1E-14 81.1 10.7 151 22-209 3-161 (164)
182 cd04161 Arl2l1_Arl13_like Arl2 99.1 2.4E-09 6.1E-14 80.6 11.1 143 22-185 2-149 (167)
183 cd04137 RheB Rheb (Ras Homolog 99.1 2.4E-09 6E-14 80.6 11.0 156 20-209 2-162 (180)
184 cd01868 Rab11_like Rab11-like. 99.1 2E-09 5.2E-14 81.0 10.5 156 21-209 5-164 (165)
185 cd04138 H_N_K_Ras_like H-Ras/N 99.1 2.4E-09 6.1E-14 80.6 10.8 151 21-209 3-161 (162)
186 cd04125 RabA_like RabA-like su 99.1 1E-09 2.6E-14 83.0 8.9 155 22-209 3-161 (188)
187 cd04108 Rab36_Rab34 Rab34/Rab3 99.1 1.2E-09 3E-14 82.6 9.2 154 22-207 3-162 (170)
188 cd04105 SR_beta Signal recogni 99.1 9.3E-09 2.4E-13 76.7 13.6 125 21-160 2-135 (203)
189 COG0486 ThdF Predicted GTPase 99.1 2.4E-09 6.1E-14 80.6 10.3 148 21-211 219-377 (454)
190 cd04114 Rab30 Rab30 subfamily. 99.0 1.5E-09 3.7E-14 82.0 9.0 154 21-208 9-167 (169)
191 cd04176 Rap2 Rap2 subgroup. T 99.0 3E-09 7.8E-14 79.9 10.4 155 21-209 3-162 (163)
192 cd04107 Rab32_Rab38 Rab38/Rab3 99.0 3.9E-09 9.9E-14 79.2 10.9 154 22-210 3-168 (201)
193 COG0218 Predicted GTPase [Gene 99.0 7.8E-09 2E-13 77.2 12.4 161 17-209 22-196 (200)
194 cd04145 M_R_Ras_like M-Ras/R-R 99.0 3.5E-09 8.9E-14 79.5 10.2 155 21-209 4-163 (164)
195 TIGR00450 thdF tRNA modificati 99.0 7.6E-09 1.9E-13 77.3 11.8 114 17-147 220-346 (473)
196 cd01865 Rab3 Rab3 subfamily. 99.0 2.2E-09 5.7E-14 80.8 8.9 153 21-209 3-162 (165)
197 cd00157 Rho Rho (Ras homology) 99.0 5.6E-09 1.4E-13 78.1 10.8 153 21-207 2-170 (171)
198 cd01866 Rab2 Rab2 subfamily. 99.0 3.3E-09 8.4E-14 79.6 9.6 153 21-209 6-165 (168)
199 cd04142 RRP22 RRP22 subfamily. 99.0 6.1E-09 1.6E-13 77.9 10.6 156 22-212 3-176 (198)
200 cd04177 RSR1 RSR1 subgroup. R 99.0 3.7E-09 9.4E-14 79.3 9.4 152 22-209 4-163 (168)
201 cd01893 Miro1 Miro1 subfamily. 99.0 9E-09 2.3E-13 76.8 11.3 156 22-209 3-163 (166)
202 cd01861 Rab6 Rab6 subfamily. 99.0 1.2E-08 3.1E-13 75.9 12.0 154 22-208 3-160 (161)
203 cd04117 Rab15 Rab15 subfamily. 99.0 4.2E-09 1.1E-13 79.0 9.5 150 22-209 3-161 (161)
204 cd04175 Rap1 Rap1 subgroup. T 99.0 6.9E-09 1.8E-13 77.6 10.5 152 21-209 3-162 (164)
205 pfam09439 SRPRB Signal recogni 99.0 1.9E-08 4.7E-13 74.7 12.6 124 20-160 4-138 (181)
206 smart00174 RHO Rho (Ras homolo 99.0 8E-09 2E-13 77.1 10.5 159 22-212 1-174 (174)
207 cd01864 Rab19 Rab19 subfamily. 99.0 5.1E-09 1.3E-13 78.4 9.4 152 21-208 5-164 (165)
208 cd04144 Ras2 Ras2 subfamily. 99.0 9.3E-09 2.4E-13 76.7 10.3 148 22-209 2-162 (190)
209 cd04115 Rab33B_Rab33A Rab33B/R 99.0 2E-08 5E-13 74.6 11.9 158 19-209 2-168 (170)
210 cd04140 ARHI_like ARHI subfami 99.0 1.1E-08 2.8E-13 76.3 10.6 153 22-208 4-163 (165)
211 pfam03144 GTP_EFTU_D2 Elongati 99.0 8.7E-10 2.2E-14 83.5 4.8 70 233-304 1-70 (70)
212 cd04106 Rab23_lke Rab23-like s 98.9 1.6E-08 4.2E-13 75.1 11.3 154 22-208 3-161 (162)
213 cd04141 Rit_Rin_Ric Rit/Rin/Ri 98.9 4E-09 1E-13 79.1 8.1 153 21-210 4-164 (172)
214 cd04122 Rab14 Rab14 subfamily. 98.9 3.6E-09 9.2E-14 79.4 7.8 153 21-209 4-163 (166)
215 cd04136 Rap_like Rap-like subf 98.9 6.6E-09 1.7E-13 77.7 9.1 149 22-209 4-162 (163)
216 cd04132 Rho4_like Rho4-like su 98.9 1.2E-08 3E-13 76.0 10.3 154 21-209 2-166 (187)
217 cd01871 Rac1_like Rac1-like su 98.9 3.1E-08 7.8E-13 73.3 12.3 157 22-209 4-174 (174)
218 cd04130 Wrch_1 Wrch-1 subfamil 98.9 2.5E-08 6.5E-13 73.8 11.7 150 22-206 3-170 (173)
219 cd04133 Rop_like Rop subfamily 98.9 2.3E-08 5.8E-13 74.2 11.4 152 22-209 4-172 (176)
220 cd04135 Tc10 TC10 subfamily. 98.9 2.1E-08 5.5E-13 74.3 11.1 156 21-208 2-172 (174)
221 cd04146 RERG_RasL11_like RERG/ 98.9 1.5E-08 3.9E-13 75.3 10.0 155 22-209 2-163 (165)
222 cd04118 Rab24 Rab24 subfamily. 98.9 2.6E-08 6.7E-13 73.7 11.0 150 22-209 3-165 (193)
223 TIGR03156 GTP_HflX GTP-binding 98.9 2E-08 5.2E-13 74.5 10.3 151 17-209 187-351 (351)
224 cd01870 RhoA_like RhoA-like su 98.9 2.9E-08 7.4E-13 73.5 11.0 150 21-208 3-173 (175)
225 cd04126 Rab20 Rab20 subfamily. 98.9 2.4E-08 6.2E-13 73.9 10.2 155 22-209 3-189 (220)
226 smart00176 RAN Ran (Ras-relate 98.9 1.9E-08 4.8E-13 74.7 9.5 147 25-209 1-153 (200)
227 PRK12299 obgE GTPase ObgE; Rev 98.9 5.9E-08 1.5E-12 71.5 11.9 153 18-210 157-327 (334)
228 cd04143 Rhes_like Rhes_like su 98.8 6.8E-08 1.7E-12 71.0 10.6 158 22-212 3-173 (247)
229 cd04148 RGK RGK subfamily. Th 98.8 3.9E-08 1E-12 72.6 9.4 156 21-210 2-163 (221)
230 cd04109 Rab28 Rab28 subfamily. 98.8 7.2E-08 1.8E-12 70.9 10.5 154 22-211 3-167 (215)
231 cd04134 Rho3 Rho3 subfamily. 98.8 1.6E-07 4E-12 68.6 12.1 155 20-209 1-173 (189)
232 cd03693 EF1_alpha_II EF1_alpha 98.8 5.5E-09 1.4E-13 78.2 4.5 86 215-308 1-90 (91)
233 cd01874 Cdc42 Cdc42 subfamily. 98.8 2.5E-07 6.3E-12 67.3 12.9 147 21-207 3-172 (175)
234 TIGR02528 EutP ethanolamine ut 98.8 1.5E-08 3.7E-13 75.4 6.4 133 21-205 2-142 (144)
235 cd04111 Rab39 Rab39 subfamily. 98.8 6.6E-08 1.7E-12 71.1 9.5 155 21-209 4-165 (211)
236 cd01892 Miro2 Miro2 subfamily. 98.8 1.6E-07 4.1E-12 68.6 11.4 157 17-208 2-164 (169)
237 COG1084 Predicted GTPase [Gene 98.8 3.6E-07 9.2E-12 66.3 13.0 113 18-147 167-293 (346)
238 cd01875 RhoG RhoG subfamily. 98.8 3E-07 7.7E-12 66.8 12.4 158 21-209 5-176 (191)
239 KOG1423 consensus 98.7 4.8E-07 1.2E-11 65.5 12.8 166 17-211 70-272 (379)
240 cd01342 Translation_Factor_II_ 98.7 2.8E-08 7.2E-13 73.5 5.4 81 219-305 1-83 (83)
241 PRK12298 obgE GTPase ObgE; Rev 98.7 3.7E-07 9.3E-12 66.2 10.8 153 19-210 159-333 (380)
242 COG3596 Predicted GTPase [Gene 98.7 3.3E-07 8.4E-12 66.5 10.3 156 21-211 41-223 (296)
243 PRK11058 putative GTPase HflX; 98.7 7E-07 1.8E-11 64.4 11.7 155 17-212 195-364 (426)
244 cd04131 Rnd Rnd subfamily. Th 98.7 9.8E-07 2.5E-11 63.4 12.3 153 21-207 3-173 (178)
245 pfam08477 Miro Miro-like prote 98.6 8.6E-07 2.2E-11 63.8 11.6 111 22-145 2-118 (118)
246 PRK12296 obgE GTPase ObgE; Rev 98.6 6.4E-07 1.6E-11 64.7 10.9 153 18-210 158-340 (495)
247 KOG1489 consensus 98.6 4.9E-07 1.3E-11 65.4 10.1 148 18-207 195-364 (366)
248 cd03698 eRF3_II_like eRF3_II_l 98.6 4.7E-08 1.2E-12 72.1 4.9 79 218-305 1-83 (83)
249 cd04129 Rho2 Rho2 subfamily. 98.6 5.1E-07 1.3E-11 65.3 9.4 154 21-209 3-172 (187)
250 COG1100 GTPase SAR1 and relate 98.5 3.8E-07 9.7E-12 66.1 7.6 115 18-151 4-128 (219)
251 TIGR00750 lao LAO/AO transport 98.5 2.4E-07 6.2E-12 67.4 6.3 169 22-210 41-268 (333)
252 KOG0073 consensus 98.5 1.2E-06 3E-11 62.9 9.5 143 18-184 16-163 (185)
253 cd04089 eRF3_II eRF3_II: domai 98.5 1.3E-07 3.4E-12 69.1 4.4 78 218-305 1-82 (82)
254 PRK12297 obgE GTPase ObgE; Rev 98.5 2.5E-06 6.3E-11 60.8 10.6 155 18-210 157-329 (429)
255 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 98.5 2.9E-06 7.4E-11 60.3 11.0 154 19-206 4-176 (182)
256 pfam03308 ArgK ArgK protein. T 98.5 4.6E-07 1.2E-11 65.6 6.8 166 20-210 30-230 (267)
257 cd04103 Centaurin_gamma Centau 98.5 1.5E-06 3.9E-11 62.1 9.3 150 22-209 3-158 (158)
258 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 98.4 9.3E-06 2.4E-10 57.0 12.4 153 16-207 9-185 (232)
259 cd04102 RabL3 RabL3 (Rab-like3 98.4 7.7E-06 2E-10 57.5 12.0 156 22-208 3-198 (202)
260 cd03697 EFTU_II EFTU_II: Elong 98.4 2.5E-07 6.4E-12 67.3 4.4 83 219-307 1-87 (87)
261 COG2262 HflX GTPases [General 98.4 5.2E-06 1.3E-10 58.7 11.1 154 17-211 190-357 (411)
262 cd01882 BMS1 Bms1. Bms1 is an 98.4 5.8E-06 1.5E-10 58.4 11.2 119 21-162 41-163 (225)
263 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 98.4 1.7E-05 4.3E-10 55.3 12.3 145 22-205 4-171 (222)
264 KOG1191 consensus 98.3 2.9E-06 7.4E-11 60.3 7.8 20 21-40 270-289 (531)
265 cd03695 CysN_NodQ_II CysN_NodQ 98.3 8.8E-07 2.2E-11 63.7 5.2 79 219-305 1-81 (81)
266 COG1163 DRG Predicted GTPase [ 98.3 2.6E-06 6.5E-11 60.7 7.5 111 19-146 63-185 (365)
267 PTZ00099 rab6; Provisional 98.3 3.3E-06 8.3E-11 60.0 7.4 122 71-211 18-143 (176)
268 cd03696 selB_II selB_II: this 98.3 1.1E-06 2.8E-11 63.1 4.9 79 219-305 1-83 (83)
269 pfam00350 Dynamin_N Dynamin fa 98.3 5.5E-06 1.4E-10 58.5 8.3 64 81-144 100-168 (168)
270 PRK09435 arginine/ornithine tr 98.3 4.5E-06 1.1E-10 59.1 7.9 167 21-210 51-253 (325)
271 pfam04670 Gtr1_RagA Gtr1/RagA 98.3 6.4E-05 1.6E-09 51.5 13.6 114 22-150 2-127 (230)
272 COG1703 ArgK Putative periplas 98.3 3.6E-06 9.1E-11 59.7 7.0 165 21-210 53-254 (323)
273 pfam00735 Septin Septin. Membe 98.2 6.7E-05 1.7E-09 51.4 13.0 119 21-147 6-154 (280)
274 cd04104 p47_IIGP_like p47 (47- 98.2 1.5E-05 3.7E-10 55.7 9.1 165 21-212 3-186 (197)
275 cd01850 CDC_Septin CDC/Septin. 98.2 0.0001 2.6E-09 50.2 12.8 120 21-147 6-156 (276)
276 KOG0090 consensus 98.1 7E-06 1.8E-10 57.8 6.4 135 7-160 26-171 (238)
277 KOG0092 consensus 98.1 1.1E-05 2.8E-10 56.5 7.0 163 21-216 7-173 (200)
278 COG4917 EutP Ethanolamine util 98.1 8.4E-06 2.1E-10 57.3 5.5 134 21-206 3-142 (148)
279 cd01859 MJ1464 MJ1464. This f 98.0 2.4E-05 6E-10 54.4 7.6 96 95-211 2-97 (156)
280 PRK13768 GTPase; Provisional 98.0 4.9E-05 1.2E-09 52.3 9.0 128 22-149 5-177 (253)
281 COG5192 BMS1 GTP-binding prote 97.9 0.00019 4.7E-09 48.5 10.7 103 22-147 72-176 (1077)
282 COG0378 HypB Ni2+-binding GTPa 97.9 7.3E-05 1.9E-09 51.1 7.3 154 19-207 13-198 (202)
283 KOG0078 consensus 97.8 0.00047 1.2E-08 45.8 11.3 144 18-185 11-160 (207)
284 cd01873 RhoBTB RhoBTB subfamil 97.8 0.00033 8.4E-09 46.8 9.8 167 21-207 4-193 (195)
285 cd03694 GTPBP_II Domain II of 97.8 5E-05 1.3E-09 52.2 5.4 81 220-305 2-87 (87)
286 KOG0076 consensus 97.8 0.00026 6.7E-09 47.5 9.0 148 14-184 12-172 (197)
287 KOG0070 consensus 97.7 7.9E-05 2E-09 50.9 6.0 158 15-208 14-176 (181)
288 pfam04548 AIG1 AIG1 family. Ar 97.7 0.0012 3.1E-08 43.1 12.0 111 21-147 2-129 (200)
289 KOG1707 consensus 97.7 0.00055 1.4E-08 45.4 10.2 146 12-183 3-159 (625)
290 KOG0084 consensus 97.7 0.00056 1.4E-08 45.3 10.1 148 21-205 11-167 (205)
291 KOG0080 consensus 97.7 0.00029 7.5E-09 47.2 8.6 154 21-208 13-172 (209)
292 KOG0098 consensus 97.7 0.00076 1.9E-08 44.5 10.2 149 21-205 8-163 (216)
293 KOG0075 consensus 97.7 0.00025 6.5E-09 47.6 7.7 153 22-210 23-182 (186)
294 KOG0395 consensus 97.7 0.00013 3.4E-09 49.4 6.2 158 19-210 3-165 (196)
295 KOG1547 consensus 97.7 9.5E-05 2.4E-09 50.4 5.4 117 21-146 48-196 (336)
296 cd03110 Fer4_NifH_child This p 97.7 0.00057 1.5E-08 45.3 9.4 70 77-148 88-157 (179)
297 COG0536 Obg Predicted GTPase [ 97.7 0.00065 1.7E-08 44.9 9.6 153 19-211 159-334 (369)
298 cd01856 YlqF YlqF. Proteins o 97.7 0.00014 3.6E-09 49.2 6.2 98 90-210 3-101 (171)
299 PRK12288 ribosome-associated G 97.7 0.00012 3.1E-09 49.7 5.8 81 105-205 122-205 (344)
300 KOG0394 consensus 97.6 0.00035 9E-09 46.6 8.1 157 17-208 7-176 (210)
301 cd02036 MinD Bacterial cell di 97.6 0.0005 1.3E-08 45.6 8.3 127 22-160 2-140 (179)
302 KOG0094 consensus 97.6 0.0028 7E-08 40.8 12.1 163 18-214 21-189 (221)
303 pfam03029 ATP_bind_1 Conserved 97.6 7.6E-05 1.9E-09 51.0 3.8 66 83-148 91-168 (234)
304 KOG1532 consensus 97.6 0.00019 4.7E-09 48.5 5.7 132 21-152 21-199 (366)
305 PRK10463 hydrogenase nickel in 97.6 0.00032 8.2E-09 46.9 6.9 160 13-206 98-285 (290)
306 TIGR02729 Obg_CgtA GTP-binding 97.5 0.0019 4.8E-08 41.9 10.6 110 19-148 158-296 (296)
307 cd01852 AIG1 AIG1 (avrRpt2-ind 97.5 0.0022 5.7E-08 41.4 10.5 111 21-147 2-129 (196)
308 KOG0093 consensus 97.5 0.001 2.6E-08 43.6 8.3 156 21-209 23-182 (193)
309 KOG0095 consensus 97.3 0.0083 2.1E-07 37.6 12.0 150 20-207 8-166 (213)
310 COG5019 CDC3 Septin family pro 97.3 0.00064 1.6E-08 44.9 6.2 122 18-147 21-175 (373)
311 PRK00098 ribosome-associated G 97.3 0.0007 1.8E-08 44.7 6.0 80 105-205 80-162 (298)
312 cd01857 HSR1_MMR1 HSR1/MMR1. 97.3 0.0015 3.9E-08 42.5 7.6 63 97-163 3-68 (141)
313 PRK01889 ribosome-associated G 97.3 0.00043 1.1E-08 46.1 4.6 81 104-205 110-191 (353)
314 KOG0088 consensus 97.2 0.00096 2.4E-08 43.8 5.8 148 21-206 15-171 (218)
315 TIGR03596 GTPase_YlqF ribosome 97.2 0.0012 3E-08 43.2 6.2 97 90-209 5-102 (276)
316 KOG1954 consensus 97.2 0.0084 2.2E-07 37.6 10.5 125 22-147 61-224 (532)
317 KOG2655 consensus 97.2 0.0012 3.2E-08 43.0 6.1 120 21-148 23-172 (366)
318 cd01849 YlqF_related_GTPase Yl 97.2 0.00081 2.1E-08 44.3 5.1 84 107-210 1-85 (155)
319 PRK12288 ribosome-associated G 97.2 0.00057 1.4E-08 45.3 4.3 77 430-518 201-277 (344)
320 KOG0071 consensus 97.1 0.0067 1.7E-07 38.3 9.6 139 22-184 20-163 (180)
321 KOG0086 consensus 97.1 0.0042 1.1E-07 39.6 8.4 117 20-150 10-130 (214)
322 KOG0077 consensus 97.1 0.0072 1.8E-07 38.0 9.6 115 19-152 20-139 (193)
323 COG1162 Predicted GTPases [Gen 97.1 0.002 5E-08 41.7 6.5 80 106-205 80-162 (301)
324 PHA02518 ParA-like protein; Pr 97.1 0.0079 2E-07 37.8 9.4 121 21-148 2-147 (211)
325 cd01854 YjeQ_engC YjeQ/EngC. 97.0 0.00069 1.8E-08 44.7 3.8 80 104-205 77-159 (287)
326 PRK00098 ribosome-associated G 97.0 0.0008 2E-08 44.3 4.1 76 430-518 158-233 (298)
327 cd01859 MJ1464 MJ1464. This f 97.0 0.0011 2.9E-08 43.3 4.8 53 21-91 103-155 (156)
328 cd03114 ArgK-like The function 97.0 0.0014 3.7E-08 42.6 5.2 114 22-145 2-148 (148)
329 PRK09563 rbgA ribosomal biogen 97.0 0.0015 3.9E-08 42.4 5.3 97 90-209 8-105 (282)
330 KOG0072 consensus 97.0 0.00087 2.2E-08 44.0 3.8 161 14-209 13-178 (182)
331 pfam03193 DUF258 Protein of un 97.0 0.0011 2.7E-08 43.5 4.1 64 20-96 36-101 (161)
332 KOG0079 consensus 96.9 0.013 3.3E-07 36.3 9.7 159 18-209 7-168 (198)
333 cd03115 SRP The signal recogni 96.9 0.023 5.9E-07 34.7 10.8 129 22-158 3-162 (173)
334 PRK10751 molybdopterin-guanine 96.9 0.0032 8E-08 40.4 6.0 50 21-95 4-53 (170)
335 KOG2486 consensus 96.9 0.015 3.8E-07 36.0 9.5 110 21-148 138-262 (320)
336 pfam05049 IIGP Interferon-indu 96.9 0.02 5.2E-07 35.1 10.1 169 17-212 32-220 (375)
337 cd03116 MobB Molybdenum is an 96.8 0.0048 1.2E-07 39.2 6.5 51 20-95 2-52 (159)
338 KOG0087 consensus 96.8 0.0052 1.3E-07 39.0 6.7 151 22-208 17-174 (222)
339 TIGR00073 hypB hydrogenase acc 96.8 0.00059 1.5E-08 45.2 1.8 151 18-207 33-220 (225)
340 PRK12289 ribosome-associated G 96.8 0.0048 1.2E-07 39.2 6.4 83 104-208 87-172 (351)
341 TIGR03371 cellulose_yhjQ cellu 96.8 0.0095 2.4E-07 37.2 7.9 81 78-160 111-194 (246)
342 TIGR03597 GTPase_YqeH ribosome 96.8 0.0046 1.2E-07 39.3 6.3 98 93-207 51-150 (360)
343 smart00053 DYNc Dynamin, GTPas 96.7 0.036 9.3E-07 33.4 10.3 129 16-149 23-207 (240)
344 pfam07015 VirC1 VirC1 protein. 96.6 0.019 5E-07 35.2 8.6 132 22-164 4-168 (231)
345 cd01856 YlqF YlqF. Proteins o 96.6 0.0029 7.3E-08 40.7 4.4 19 22-40 118-136 (171)
346 cd03289 ABCC_CFTR2 The CFTR su 96.6 0.02 5E-07 35.2 8.5 29 21-52 32-60 (275)
347 PRK11537 putative GTP-binding 96.6 0.035 9E-07 33.5 9.8 135 18-158 3-173 (317)
348 pfam02492 cobW CobW/HypB/UreG, 96.6 0.05 1.3E-06 32.5 10.5 132 23-159 4-164 (174)
349 PRK11174 cysteine/glutathione 96.6 0.015 3.9E-07 35.9 7.7 21 241-261 369-389 (588)
350 pfam00448 SRP54 SRP54-type pro 96.6 0.066 1.7E-06 31.7 12.1 134 21-159 3-164 (196)
351 KOG0448 consensus 96.6 0.066 1.7E-06 31.7 12.5 157 21-183 111-310 (749)
352 cd01849 YlqF_related_GTPase Yl 96.5 0.013 3.3E-07 36.4 7.1 53 21-91 102-154 (155)
353 PRK12289 ribosome-associated G 96.5 0.0027 7E-08 40.8 3.4 46 453-508 187-232 (351)
354 pfam05783 DLIC Dynein light in 96.5 0.025 6.3E-07 34.5 8.2 20 20-39 46-65 (490)
355 cd03278 ABC_SMC_barmotin Barmo 96.4 0.023 6E-07 34.7 8.0 24 22-45 25-48 (197)
356 TIGR00436 era GTP-binding prot 96.4 0.012 3E-07 36.6 6.4 112 21-147 2-123 (278)
357 cd01853 Toc34_like Toc34-like 96.4 0.0098 2.5E-07 37.2 5.9 98 20-150 32-130 (249)
358 cd03702 IF2_mtIF2_II This fami 96.4 0.0073 1.9E-07 38.0 5.2 78 222-308 4-82 (95)
359 cd01858 NGP_1 NGP-1. Autoanti 96.4 0.0066 1.7E-07 38.3 4.9 51 98-148 1-53 (157)
360 TIGR03348 VI_IcmF type VI secr 96.4 0.026 6.5E-07 34.4 7.9 110 22-146 114-255 (1169)
361 cd01857 HSR1_MMR1 HSR1/MMR1. 96.4 0.0058 1.5E-07 38.6 4.6 58 17-92 81-138 (141)
362 cd01858 NGP_1 NGP-1. Autoanti 96.4 0.0097 2.5E-07 37.2 5.7 53 21-91 104-156 (157)
363 cd01855 YqeH YqeH. YqeH is an 96.4 0.0077 2E-07 37.8 5.1 86 107-209 36-124 (190)
364 cd03369 ABCC_NFT1 Domain 2 of 96.3 0.07 1.8E-06 31.6 9.9 53 21-75 36-91 (207)
365 KOG0074 consensus 96.3 0.038 9.8E-07 33.3 8.3 114 16-149 15-134 (185)
366 cd03288 ABCC_SUR2 The SUR doma 96.3 0.089 2.3E-06 30.9 10.2 82 21-106 49-133 (257)
367 COG1162 Predicted GTPases [Gen 96.3 0.005 1.3E-07 39.1 3.7 15 285-299 217-231 (301)
368 PRK10867 signal recognition pa 96.2 0.04 1E-06 33.1 8.1 132 21-158 102-263 (453)
369 PRK10416 cell division protein 96.2 0.03 7.6E-07 34.0 7.3 124 317-457 292-422 (499)
370 PRK13796 GTP-binding protein Y 96.1 0.02 5.1E-07 35.1 6.2 98 93-207 59-158 (367)
371 COG0541 Ffh Signal recognition 96.1 0.052 1.3E-06 32.4 8.4 129 21-155 102-259 (451)
372 pfam01656 CbiA CobQ/CobB/MinD/ 96.1 0.028 7.2E-07 34.1 7.0 69 80-150 111-180 (212)
373 PRK10790 putative multidrug tr 96.1 0.035 9E-07 33.5 7.4 23 239-261 358-380 (593)
374 COG0523 Putative GTPases (G3E 96.1 0.051 1.3E-06 32.5 8.1 138 22-168 4-176 (323)
375 cd03252 ABCC_Hemolysin The ABC 96.1 0.064 1.6E-06 31.8 8.7 51 21-74 30-84 (237)
376 cd03222 ABC_RNaseL_inhibitor T 96.0 0.12 3.1E-06 29.9 10.4 93 21-143 27-130 (177)
377 cd03246 ABCC_Protease_Secretio 96.0 0.067 1.7E-06 31.7 8.6 114 20-143 29-154 (173)
378 cd03253 ABCC_ATM1_transporter 96.0 0.075 1.9E-06 31.4 8.8 53 21-76 29-85 (236)
379 PRK05703 flhF flagellar biosyn 96.0 0.061 1.5E-06 32.0 8.3 19 250-269 212-230 (412)
380 KOG0780 consensus 96.0 0.046 1.2E-06 32.7 7.6 123 22-147 104-253 (483)
381 PRK12312 infB translation init 95.9 0.016 4E-07 35.8 5.0 10 87-96 120-129 (610)
382 cd03244 ABCC_MRP_domain2 Domai 95.9 0.12 2.9E-06 30.1 9.2 51 21-74 32-86 (221)
383 PRK06995 flhF flagellar biosyn 95.8 0.069 1.8E-06 31.6 8.0 19 251-270 179-197 (404)
384 PRK05306 infB translation init 95.8 0.018 4.7E-07 35.4 5.0 16 416-431 665-680 (839)
385 PRK13657 cyclic beta-1,2-gluca 95.8 0.06 1.5E-06 32.0 7.5 24 238-261 351-374 (585)
386 PTZ00243 ABC transporter; Prov 95.8 0.079 2E-06 31.2 8.1 21 22-42 689-709 (1560)
387 KOG0410 consensus 95.8 0.073 1.9E-06 31.4 7.8 144 21-209 180-340 (410)
388 TIGR03597 GTPase_YqeH ribosome 95.6 0.013 3.3E-07 36.4 3.5 72 83-160 70-150 (360)
389 pfam09547 Spore_IV_A Stage IV 95.6 0.16 4.2E-06 29.1 9.1 125 21-147 19-193 (492)
390 COG1763 MobB Molybdopterin-gua 95.6 0.041 1.1E-06 33.1 5.9 50 21-95 4-53 (161)
391 cd03701 IF2_IF5B_II IF2_IF5B_I 95.5 0.024 6.2E-07 34.6 4.7 75 223-306 5-80 (95)
392 PRK11160 cysteine/glutathione 95.5 0.053 1.3E-06 32.4 6.3 20 242-261 361-380 (575)
393 CHL00189 infB translation init 95.5 0.029 7.5E-07 34.0 4.9 17 77-93 108-124 (770)
394 TIGR00101 ureG urease accessor 95.4 0.03 7.7E-07 34.0 4.8 112 21-147 3-150 (199)
395 PRK13849 putative crown gall t 95.4 0.051 1.3E-06 32.5 5.9 133 22-163 4-167 (231)
396 TIGR03596 GTPase_YlqF ribosome 95.3 0.038 9.6E-07 33.3 5.0 55 21-93 120-174 (276)
397 cd03692 mtIF2_IVc mtIF2_IVc: t 95.3 0.034 8.6E-07 33.6 4.7 75 222-304 7-83 (84)
398 TIGR00176 mobB molybdopterin-g 95.3 0.034 8.7E-07 33.6 4.7 21 22-42 2-22 (165)
399 PRK06731 flhF flagellar biosyn 95.2 0.17 4.3E-06 29.0 8.2 138 16-158 72-234 (270)
400 TIGR02782 TrbB_P P-type conjug 95.2 0.017 4.4E-07 35.6 3.1 23 20-42 140-162 (315)
401 PRK13760 putative RNA-associat 95.2 0.14 3.7E-06 29.5 7.8 66 416-482 164-229 (233)
402 PRK09563 rbgA ribosomal biogen 95.2 0.045 1.2E-06 32.8 5.0 20 21-40 123-142 (282)
403 COG3640 CooC CO dehydrogenase 95.1 0.068 1.7E-06 31.6 5.8 63 82-147 134-198 (255)
404 cd03228 ABCC_MRP_Like The MRP 95.1 0.17 4.2E-06 29.1 7.8 100 20-130 29-138 (171)
405 cd03247 ABCC_cytochrome_bd The 95.1 0.27 7E-06 27.7 9.1 35 7-41 6-50 (178)
406 PRK13796 GTP-binding protein Y 95.0 0.029 7.5E-07 34.0 3.7 73 82-160 77-158 (367)
407 cd04178 Nucleostemin_like Nucl 95.0 0.053 1.4E-06 32.3 5.0 54 107-163 1-56 (172)
408 KOG3883 consensus 95.0 0.29 7.3E-06 27.5 10.2 113 19-148 9-132 (198)
409 PRK10789 putative multidrug tr 95.0 0.15 3.8E-06 29.4 7.3 24 238-261 331-354 (569)
410 cd02042 ParA ParA and ParB of 94.9 0.039 9.9E-07 33.2 4.1 66 27-117 8-73 (104)
411 cd01855 YqeH YqeH. YqeH is an 94.9 0.058 1.5E-06 32.1 5.0 32 83-117 41-72 (190)
412 COG4963 CpaE Flp pilus assembl 94.8 0.19 4.8E-06 28.8 7.4 64 83-148 219-285 (366)
413 PRK12723 flagellar biosynthesi 94.7 0.33 8.5E-06 27.1 9.3 16 150-165 84-99 (388)
414 PRK09601 translation-associate 94.7 0.29 7.5E-06 27.5 8.2 87 21-118 4-109 (364)
415 COG1161 Predicted GTPases [Gen 94.7 0.096 2.4E-06 30.7 5.6 88 86-184 14-102 (322)
416 KOG1486 consensus 94.6 0.11 2.8E-06 30.3 5.8 95 18-132 62-164 (364)
417 PTZ00265 multidrug resistance 94.6 0.3 7.8E-06 27.4 8.1 21 21-41 413-433 (1467)
418 PRK00771 signal recognition pa 94.5 0.37 9.5E-06 26.8 8.4 128 22-156 100-255 (433)
419 cd03248 ABCC_TAP TAP, the Tran 94.4 0.39 9.9E-06 26.7 8.9 52 21-75 42-97 (226)
420 KOG0096 consensus 94.4 0.16 4.1E-06 29.2 6.2 114 19-148 10-128 (216)
421 COG0532 InfB Translation initi 94.3 0.089 2.3E-06 30.9 4.9 14 528-541 451-464 (509)
422 KOG1490 consensus 94.3 0.11 2.8E-06 30.3 5.3 112 18-146 167-293 (620)
423 TIGR03375 type_I_sec_LssB type 94.2 0.28 7.2E-06 27.6 7.2 21 240-260 483-503 (694)
424 PRK11176 lipid transporter ATP 94.1 0.23 5.8E-06 28.2 6.5 24 238-261 358-381 (581)
425 cd03703 aeIF5B_II aeIF5B_II: T 94.0 0.15 3.8E-06 29.4 5.5 47 228-276 10-56 (110)
426 TIGR01425 SRP54_euk signal rec 93.8 0.2 5E-06 28.6 5.8 125 13-146 113-272 (453)
427 COG1121 ZnuC ABC-type Mn/Zn tr 93.8 0.45 1.2E-05 26.2 7.6 81 21-107 32-128 (254)
428 cd01983 Fer4_NifH The Fer4_Nif 93.8 0.33 8.5E-06 27.1 6.9 76 22-125 2-78 (99)
429 PRK03695 vitamin B12-transport 93.7 0.14 3.6E-06 29.5 4.8 29 21-52 25-53 (245)
430 PRK13548 hmuV hemin importer A 93.4 0.12 2.9E-06 30.1 4.0 29 21-52 30-59 (257)
431 cd03217 ABC_FeS_Assembly ABC-t 93.4 0.37 9.4E-06 26.8 6.6 47 21-70 28-81 (200)
432 KOG3886 consensus 93.2 0.42 1.1E-05 26.5 6.7 119 20-155 5-137 (295)
433 KOG4252 consensus 93.1 0.12 2.9E-06 30.1 3.6 129 4-147 2-137 (246)
434 PRK13631 cbiO cobalt transport 93.0 0.089 2.3E-06 30.9 2.9 24 21-47 54-77 (320)
435 KOG2485 consensus 93.0 0.2 5.1E-06 28.5 4.7 68 80-149 20-88 (335)
436 KOG0097 consensus 92.9 0.71 1.8E-05 25.0 9.5 144 14-184 6-158 (215)
437 cd03254 ABCC_Glucan_exporter_l 92.9 0.29 7.4E-06 27.5 5.5 82 20-106 30-116 (229)
438 PRK13632 cbiO cobalt transport 92.9 0.16 4E-06 29.2 4.1 38 7-47 14-61 (273)
439 TIGR02142 modC_ABC molybdate A 92.8 0.078 2E-06 31.2 2.4 24 22-48 26-49 (361)
440 TIGR02857 CydD ABC transporter 92.8 0.091 2.3E-06 30.8 2.7 31 230-260 358-390 (570)
441 PRK13900 type IV secretion sys 92.8 0.12 3E-06 30.0 3.3 21 192-212 167-187 (332)
442 PRK12724 flagellar biosynthesi 92.8 0.75 1.9E-05 24.8 8.2 18 251-269 226-243 (432)
443 KOG3887 consensus 92.8 0.23 5.9E-06 28.2 4.8 140 17-174 26-180 (347)
444 PRK08118 topology modulation p 92.7 0.12 3.1E-06 29.9 3.3 26 20-45 2-27 (167)
445 COG0396 sufC Cysteine desulfur 92.7 0.17 4.3E-06 29.0 4.0 49 22-70 33-85 (251)
446 TIGR01007 eps_fam capsular exo 92.6 0.79 2E-05 24.7 7.3 130 13-150 13-199 (207)
447 PRK05057 aroK shikimate kinase 92.6 0.2 5.1E-06 28.6 4.3 44 18-70 3-47 (172)
448 cd03221 ABCF_EF-3 ABCF_EF-3 E 92.6 0.8 2E-05 24.6 12.7 108 2-142 9-124 (144)
449 PRK00131 aroK shikimate kinase 92.5 0.23 5.8E-06 28.2 4.5 45 17-70 2-47 (175)
450 PRK11231 fecE iron-dicitrate t 92.5 0.15 3.9E-06 29.3 3.6 48 21-71 30-81 (255)
451 cd03226 ABC_cobalt_CbiO_domain 92.5 0.22 5.6E-06 28.3 4.4 23 22-47 29-51 (205)
452 TIGR02673 FtsE cell division A 92.5 0.088 2.2E-06 30.9 2.3 19 24-43 33-51 (215)
453 cd03218 ABC_YhbG The ABC trans 92.4 0.16 4E-06 29.2 3.6 24 21-47 28-51 (232)
454 PRK09536 btuD corrinoid ABC tr 92.2 0.2 5E-06 28.6 3.9 57 20-79 29-89 (409)
455 TIGR00955 3a01204 Pigment prec 92.2 0.11 2.7E-06 30.3 2.5 20 22-41 61-80 (671)
456 COG1120 FepC ABC-type cobalami 92.2 0.89 2.3E-05 24.3 8.8 115 21-140 30-162 (258)
457 PRK10253 iron-enterobactin tra 92.2 0.17 4.3E-06 29.1 3.4 51 20-73 34-88 (265)
458 PRK07261 topology modulation p 92.1 0.16 4.1E-06 29.2 3.3 24 22-45 3-26 (171)
459 PRK13644 cbiO cobalt transport 92.1 0.13 3.2E-06 29.9 2.8 24 21-47 30-53 (274)
460 COG1149 MinD superfamily P-loo 92.1 0.9 2.3E-05 24.3 8.1 24 21-44 3-27 (284)
461 cd03223 ABCD_peroxisomal_ALDP 92.1 0.47 1.2E-05 26.1 5.7 24 21-47 29-52 (166)
462 COG1419 FlhF Flagellar GTP-bin 92.0 0.93 2.4E-05 24.2 9.0 13 247-259 202-214 (407)
463 PRK13646 cbiO cobalt transport 92.0 0.14 3.5E-06 29.7 2.8 24 21-47 35-58 (286)
464 TIGR01978 sufC FeS assembly AT 91.9 0.14 3.7E-06 29.5 2.9 60 22-95 29-97 (248)
465 cd01130 VirB11-like_ATPase Typ 91.9 0.19 4.7E-06 28.8 3.4 24 19-42 25-48 (186)
466 cd03249 ABC_MTABC3_MDL1_MDL2 M 91.9 0.15 3.7E-06 29.5 2.9 21 21-41 31-51 (238)
467 PRK13651 cobalt transporter AT 91.9 0.15 3.9E-06 29.3 3.0 23 21-46 35-57 (304)
468 COG0419 SbcC ATPase involved i 91.8 0.17 4.4E-06 29.0 3.2 29 22-50 28-57 (908)
469 PRK13643 cbiO cobalt transport 91.8 0.14 3.5E-06 29.6 2.7 23 22-47 35-57 (288)
470 COG1428 Deoxynucleoside kinase 91.7 0.15 3.7E-06 29.5 2.7 46 21-66 6-52 (216)
471 TIGR01184 ntrCD nitrate ABC tr 91.6 0.13 3.4E-06 29.7 2.4 21 22-45 14-34 (230)
472 PRK03918 chromosome segregatio 91.5 0.82 2.1E-05 24.5 6.4 25 22-46 26-51 (882)
473 cd03291 ABCC_CFTR1 The CFTR su 91.3 0.17 4.4E-06 29.0 2.8 20 21-40 65-84 (282)
474 COG0563 Adk Adenylate kinase a 91.3 0.26 6.7E-06 27.8 3.7 27 20-46 1-27 (178)
475 PRK06547 hypothetical protein; 91.3 0.19 4.9E-06 28.7 3.0 27 16-42 12-38 (184)
476 cd03238 ABC_UvrA The excision 91.3 0.22 5.6E-06 28.3 3.2 26 22-47 24-49 (176)
477 COG3523 IcmF Type VI protein s 91.2 0.66 1.7E-05 25.1 5.6 110 22-146 128-268 (1188)
478 cd02117 NifH_like This family 91.1 0.84 2.1E-05 24.5 6.1 67 78-148 113-189 (212)
479 PRK13634 cbiO cobalt transport 91.1 0.17 4.2E-06 29.1 2.5 24 21-47 22-45 (276)
480 PRK13647 cbiO cobalt transport 91.1 0.19 4.9E-06 28.7 2.8 24 21-47 33-56 (273)
481 PRK13639 cbiO cobalt transport 91.1 0.19 4.9E-06 28.7 2.8 24 21-47 30-53 (275)
482 PRK11568 hypothetical protein; 91.0 1.2 3E-05 23.5 10.0 70 411-482 132-201 (204)
483 PRK13636 cbiO cobalt transport 91.0 0.21 5.3E-06 28.5 2.9 24 21-47 34-57 (285)
484 cd03251 ABCC_MsbA MsbA is an e 90.9 0.2 5.1E-06 28.6 2.8 54 21-77 30-87 (234)
485 PRK13947 shikimate kinase; Pro 90.9 0.23 5.8E-06 28.2 3.1 43 19-70 1-44 (171)
486 CHL00175 minD septum-site dete 90.9 0.51 1.3E-05 25.9 4.8 67 78-146 121-188 (279)
487 PRK13645 cbiO cobalt transport 90.9 0.2 5E-06 28.6 2.7 24 21-47 39-62 (289)
488 COG0552 FtsY Signal recognitio 90.9 1.2 3.1E-05 23.4 7.0 14 152-165 66-79 (340)
489 COG4962 CpaF Flp pilus assembl 90.8 0.17 4.4E-06 29.0 2.3 13 311-323 126-138 (355)
490 cd03290 ABCC_SUR1_N The SUR do 90.7 0.22 5.6E-06 28.3 2.8 20 21-40 29-48 (218)
491 PRK13650 cbiO cobalt transport 90.7 0.21 5.4E-06 28.4 2.7 24 21-47 32-55 (276)
492 PRK13546 teichoic acids export 90.6 0.23 5.9E-06 28.1 2.9 23 22-47 53-75 (264)
493 CHL00131 ycf16 sulfate ABC tra 90.6 0.46 1.2E-05 26.2 4.4 19 21-39 34-52 (252)
494 cd02023 UMPK Uridine monophosp 90.6 0.29 7.3E-06 27.5 3.3 23 22-44 2-24 (198)
495 cd03234 ABCG_White The White s 90.5 0.3 7.6E-06 27.4 3.4 24 21-47 35-58 (226)
496 KOG0462 consensus 90.5 0.042 1.1E-06 33.0 -1.0 156 451-618 458-634 (650)
497 PRK13640 cbiO cobalt transport 90.5 0.22 5.6E-06 28.3 2.6 23 21-46 36-58 (283)
498 PRK11300 livG leucine/isoleuci 90.4 0.26 6.5E-06 27.9 3.0 23 22-47 34-56 (255)
499 PRK09580 sufC cysteine desulfu 90.4 0.56 1.4E-05 25.6 4.7 46 22-70 30-82 (248)
500 cd03225 ABC_cobalt_CbiO_domain 90.4 0.65 1.7E-05 25.2 5.0 50 22-74 30-83 (211)
No 1
>TIGR01394 TypA_BipA GTP-binding protein TypA; InterPro: IPR006298 This bacterial (and Arabidopsis) protein, termed TypA or BipA, is a GTP-binding protein. It is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.; GO: 0005525 GTP binding, 0005622 intracellular.
Probab=100.00 E-value=0 Score=2032.27 Aligned_cols=595 Identities=61% Similarity=0.975 Sum_probs=585.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC-CCCC-CCCCCCEECCCCHHHHHCCCEEEEEEEEEEECC----EEEEEECCCCC
Q ss_conf 31499985468987788999999839-6142-322000003885779870960646799999899----79999728987
Q gi|254780233|r 19 IRNIAIIAHVDHGKTTLVDELLKQSG-VFRD-NQRVSERVMDCNDLEKERGITILAKVTSIVWND----VRINIVDTPGH 92 (624)
Q Consensus 19 IRNiaIiaHvDhGKTTL~d~LL~~sG-~~~~-~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~----~~iNiiDTPGH 92 (624)
|||||||||||||||||||+||+||| +|++ ++.++||+|||||+||||||||+|||||+.|++ ++|||||||||
T Consensus 1 iRNIAIIAHVDHGKTTLVD~LL~Qsgf~f~~~~~~~~ER~MDSNDLErERGITILaKNTav~y~g~dG~~~INIvDTPGH 80 (609)
T TIGR01394 1 IRNIAIIAHVDHGKTTLVDALLKQSGFTFRADNEAVAERVMDSNDLERERGITILAKNTAVRYNGKDGVTKINIVDTPGH 80 (609)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHCCCCCCCEEEEEEECCCCCEEEEEEEECCCC
T ss_conf 97189998806994368988888765886415883213540676521001552013003662528897189977816898
Q ss_pred CCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHC
Q ss_conf 54079999998742178999976878864789999999972997899997543667402568999998886226730110
Q gi|254780233|r 93 ADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQL 172 (624)
Q Consensus 93 ~DF~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~l 172 (624)
|||||||||+|+|||||||||||.|||||||||||+|||++||+|||||||+|||+|||++|+|++||||++|+|+||||
T Consensus 81 ADFGGEVERvL~MVDGvlLlVDA~EGPMPQTrFVL~KAL~~gLkPIVViNKiDrp~ARP~eV~d~vFDLF~~LgA~deQL 160 (609)
T TIGR01394 81 ADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVDEVFDLFIELGADDEQL 160 (609)
T ss_pred CCCCCEEEEECEEEEEEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 87886588733024058999857888988534789999956893699971347887883788757878888538880010
Q ss_pred CHHHHHHHHHCCEECCCCC----CCCCCCCHHHHHHHHCCCCCCCCC-CCHHHCCCCCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf 4266887886591646742----233486413555321024542233-20000011110136777349999960780515
Q gi|254780233|r 173 DFPILYGSGRFGWMSDSSD----GSRDQGMVPLLNLIVDHVPPPVIS-EGEFKMIGTILEKDPFLGRIVTGRIHSGTIKS 247 (624)
Q Consensus 173 d~Pv~~~Sa~~G~~~~~~~----~~~~~gl~~Lld~Ii~~iP~P~~~-e~pl~~~V~~i~~d~y~Gria~gRV~sGtlk~ 247 (624)
|||++|||||+|||+.+.+ .....+|.||||+|++|+|+|..+ |+||||||+++|||+|+|||++|||++|+||+
T Consensus 161 DFP~vYASa~~G~A~l~~~~dg~~~~~~~m~PLFd~I~~hvPaP~~~~d~PlQmlvt~ldy~~y~GRI~~GRv~~G~vk~ 240 (609)
T TIGR01394 161 DFPIVYASARAGWASLDKDKDGLDDDSEDMAPLFDAILRHVPAPKGDLDEPLQMLVTNLDYDEYLGRIAIGRVHRGTVKK 240 (609)
T ss_pred CHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHEEEECCCCCCCCEEEEEEEEECEECC
T ss_conf 12567665236720144665778872201789998986406888988876242100011014677669999875056546
Q ss_pred CCEEEEECCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 98899960578501211455301103665344411254554322223321012211055652112336666542157861
Q gi|254780233|r 248 NQNIKALSPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSIAGLVKATVADTFCDPSIDEPLKAQPIDPPTVTMTFG 327 (624)
Q Consensus 248 Gd~V~vl~~~g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIvaIaGl~~~~iGDTL~~~~~p~~Lp~i~i~~Ptis~~f~ 327 (624)
||.|.++++++...+.+||++|+.|.|++|.++|+|.|||||||+||+++.||||||++++|+|||.++|||||+||+|+
T Consensus 241 Gq~V~~~~~d~g~~~~~ri~~L~~f~GL~R~~~d~A~AGDIvAvaG~~~~~IGeTiad~~~~~ALP~~~vDEPT~sMtF~ 320 (609)
T TIGR01394 241 GQQVALMKRDDGTIENGRISKLLGFEGLERVEIDEAGAGDIVAVAGLEDINIGETIADPEAPEALPLITVDEPTLSMTFS 320 (609)
T ss_pred CCEEEEEECCCCEEEEEEEEEEEECCCCEEEECCCCCCCCEEEEECCCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 86479872469689777764542015711000455798778999077988735211333346788711258881289987
Q ss_pred CCCCCCCCCC-CCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEECCHHHHHHHHHHHHHCCEEEECCCCEEEEEE
Q ss_conf 2686554444-321017889999999730283799998599975999963645688887412334803301574489982
Q gi|254780233|r 328 VNDSPLAGTE-GDKVTSRMIRDRLFKEAEGNIALKIEESSSKDAFFVSGRGELQLAVLIETMRREGFELAVSRPRVVIKK 406 (624)
Q Consensus 328 vn~sP~ag~e-g~~~ts~~l~~rL~ke~~~dvsL~ve~~~~~~~~~v~GrGeLHL~IliE~mRREG~E~~vs~P~V~~k~ 406 (624)
||||||||+| |||||||+|+|||.||++.|+||||+++++++.|.|||||||||+|||||||||||||+||+|+|+||+
T Consensus 321 vN~SPlAG~EVGk~VTSR~i~dRL~rEL~~NvALrVe~t~~~D~f~VsGRGELhLsILiEtMRREGfEl~Vg~P~Vi~k~ 400 (609)
T TIGR01394 321 VNDSPLAGKEVGKFVTSRQIRDRLERELETNVALRVEDTESADKFEVSGRGELHLSILIETMRREGFELQVGRPQVIYKE 400 (609)
T ss_pred ECCCCCCCCCCCCEECCCCHHHHHHHHHHCCCEEEEECCCCCCCEEEECCEEEHHHHHHHCCCCCCEEEEECCCEEEEEE
T ss_conf 52887655325730324415789999863171456403898873487201113023454203444414753597789984
Q ss_pred ECCEECCEEEEEEEECCHHHHHHHHHHHHHCCCEECCCCCCCC-CEEEEEEEECHHHHHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf 0882604168888731323310789988743540104213689-849999996133565688998853276167888870
Q gi|254780233|r 407 EGDSLLEPIEEVVIDVDEEHSGAVVQKMTLHKSEMIELRPSGT-GRVRLVFLSPTRGLIGYQSQLMTDTRGTAIMNRLFH 485 (624)
Q Consensus 407 ~dg~~lEPie~v~I~vp~ey~G~Vi~~l~~RrG~i~~m~~~~~-g~~~l~~~vP~r~l~g~~~~l~s~T~G~g~~~~~f~ 485 (624)
+||++|||||+++|||||||+|.||+.|+.|||+|.+|.|.++ |||||+|.+||||||||+++|+|+|||+|+|||.|+
T Consensus 401 ~dG~k~EP~E~~~IDVPEe~~G~V~e~Lg~RKgEm~~M~~~g~EG~tRl~F~~PsRGLIGfr~~FlT~TrG~Gimn~~F~ 480 (609)
T TIGR01394 401 IDGKKLEPIEELTIDVPEEHVGAVIEKLGKRKGEMKDMEPSGNEGRTRLEFVIPSRGLIGFRTEFLTDTRGTGIMNHVFD 480 (609)
T ss_pred ECCEEECCEEEEEEECCCCCCCHHHHHHCCCCEEEEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 58853187569998028533546665314783477725676996469999981664001220245441021311201210
Q ss_pred CCCCCC-CCCCCCCCEEEEECCCCCEEEEHHHHHHHHCCEEECCCCEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 530135-7878777425888289858300333123211226279985437828676467543103441665012213688
Q gi|254780233|r 486 SYQPHK-GEIGGRSNGVLLSNEEGKVVAYALFNLEDRGSMIVEPGDKVYQGMIVGIHTRENDLDVNVLKGKKLTNMRASG 564 (624)
Q Consensus 486 ~Y~p~~-g~i~~r~~G~lis~~~G~~~~yal~~lq~rG~~fv~pg~~vy~Gmivge~~r~~dl~vN~~k~k~ltn~r~~~ 564 (624)
+|+||+ |+|.+|+||||||+++|++++|||+|||+||+|||+||++||+|||||||+|+|||+|||||+||||||||||
T Consensus 481 ~Y~P~~pG~i~~R~~GsLVs~~~G~a~~YaL~nLqeRG~~Fv~pG~~VY~GMIiGEhsR~~DL~VN~~K~K~LTN~RsSg 560 (609)
T TIGR01394 481 EYEPWKPGEIETRRNGSLVSMEDGTATAYALWNLQERGRLFVSPGTEVYEGMIIGEHSRENDLDVNVCKAKKLTNVRSSG 560 (609)
T ss_pred CCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCEEECCCCCEECCEEEEECCCCCCCEECCCCCCCCCEEEECC
T ss_conf 25788876877751415899268810667687387538433078862633478872388666602751676421034037
Q ss_pred CCEEEEECCCCEEEHHHHHHHHHCCEEEEECCCCEEEEEECCCHHHHHH
Q ss_conf 7326885599233399998886458399998877167630159657688
Q gi|254780233|r 565 KDEAVKLVPAVKMTLEQALSWIQNDELVEVTPKSIRLRKMYLDPNERKR 613 (624)
Q Consensus 565 ~d~~~~l~~~~~~~le~~~~~i~~DelvevtP~~iR~RK~~l~~~~r~~ 613 (624)
+|++++|+||+.||||+|||||++||||||||+||||||++|++++|||
T Consensus 561 ~D~~~~L~pP~~lsLE~AlEyI~~DELVEVTP~sIRlRK~~L~~~~Rkr 609 (609)
T TIGR01394 561 KDEAVKLTPPRKLSLEQALEYIEDDELVEVTPKSIRLRKRVLDPNERKR 609 (609)
T ss_pred CCCEEEECCCCCCCHHHHHHHHCCCCCEEECCCEEEEEECCCCHHHCCC
T ss_conf 7741686588555777999861788628877853566311057302589
No 2
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=100.00 E-value=0 Score=1703.67 Aligned_cols=601 Identities=63% Similarity=0.977 Sum_probs=590.9
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCC
Q ss_conf 02431499985468987788999999839614232200000388577987096064679999989979999728987540
Q gi|254780233|r 16 YMQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADF 95 (624)
Q Consensus 16 ~~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF 95 (624)
.++|||||||||||||||||+|+||+|||+|++++.+.||+|||+++||||||||+||||++.|++++|||+|||||+||
T Consensus 2 ~~~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADF 81 (603)
T COG1217 2 MEDIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADF 81 (603)
T ss_pred CCCCCEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCHHHHHCCCCCHHHHCCCEEEECCCEEECCCEEEEEECCCCCCCC
T ss_conf 76653068999844881028999987316544565201440376423443493898515246208838987658986776
Q ss_pred HHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHH
Q ss_conf 79999998742178999976878864789999999972997899997543667402568999998886226730110426
Q gi|254780233|r 96 GGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFP 175 (624)
Q Consensus 96 ~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~P 175 (624)
+|||||+|+|+|||||||||.||||||||||++||+++||+|||||||+|||+|||++|+++++|||++|+|+|+|||||
T Consensus 82 GGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFP 161 (603)
T COG1217 82 GGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFP 161 (603)
T ss_pred CCHHHHHHHHCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCHHHCCCE
T ss_conf 62545114323348999975558887314448999974998489996778999887899999999999819974557870
Q ss_pred HHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCCCCCC-CCHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEE
Q ss_conf 6887886591646742233486413555321024542233-200000111101367773499999607805159889996
Q gi|254780233|r 176 ILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPPVIS-EGEFKMIGTILEKDPFLGRIVTGRIHSGTIKSNQNIKAL 254 (624)
Q Consensus 176 v~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~P~~~-e~pl~~~V~~i~~d~y~Gria~gRV~sGtlk~Gd~V~vl 254 (624)
++|+||++||++.+.+... .+|.||||+|++|+|+|..+ ++||||+|+.++||+|+|||++|||++|++|+||.|.++
T Consensus 162 ivYAS~~~G~a~~~~~~~~-~~m~pLfe~I~~hvp~P~~~~d~PlQ~qvt~Ldyn~y~GrIgigRi~~G~vk~~q~V~~i 240 (603)
T COG1217 162 IVYASARNGTASLDPEDEA-DDMAPLFETILDHVPAPKGDLDEPLQMQVTQLDYNSYVGRIGIGRIFRGTVKPNQQVALI 240 (603)
T ss_pred EEEEECCCCEECCCCCCCC-CCHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEEECCCCCCCCEEEEE
T ss_conf 7985414751015865555-531689999997589998999888078998522445452268999852725489768998
Q ss_pred CCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCC
Q ss_conf 05785012114553011036653444112545543222233210122110556521123366665421578612686554
Q gi|254780233|r 255 SPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSIAGLVKATVADTFCDPSIDEPLKAQPIDPPTVTMTFGVNDSPLA 334 (624)
Q Consensus 255 ~~~g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIvaIaGl~~~~iGDTL~~~~~p~~Lp~i~i~~Ptis~~f~vn~sP~a 334 (624)
+.+|. .+++||++++.|.|++|.++++|.|||||||+|++++.||||||++++|+|||.+++||||+||.|+||+||||
T Consensus 241 ~~~g~-~~~gri~kll~f~GL~R~ei~eA~AGDIvaiaG~~~~~igdTi~d~~~~~aLp~l~iDePTlsMtf~vN~SPfA 319 (603)
T COG1217 241 KSDGT-TENGRITKLLGFLGLERIEIEEAEAGDIVAIAGLEDINIGDTICDPDNPEALPALSVDEPTLSMTFSVNDSPFA 319 (603)
T ss_pred CCCCC-EEEEEEEEEEECCCEEEEEHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCC
T ss_conf 47994-77557766655054233350012556789982764355434135877766788733689846899995688777
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEECCHHHHHHHHHHHHHCCEEEECCCCEEEEEEECCEECCE
Q ss_conf 44432101788999999973028379999859997599996364568888741233480330157448998208826041
Q gi|254780233|r 335 GTEGDKVTSRMIRDRLFKEAEGNIALKIEESSSKDAFFVSGRGELQLAVLIETMRREGFELAVSRPRVVIKKEGDSLLEP 414 (624)
Q Consensus 335 g~eg~~~ts~~l~~rL~ke~~~dvsL~ve~~~~~~~~~v~GrGeLHL~IliE~mRREG~E~~vs~P~V~~k~~dg~~lEP 414 (624)
|+|||++|||+|++||.||++.|+||+|+++++++.|.|||||||||+||||+||||||||+||+|+|+||++||++|||
T Consensus 320 G~EGk~vTSR~i~dRL~~El~~NValrVe~t~~pd~f~VsGRGELhLsILiE~MRREGfEl~VsrP~Vi~keidG~~~EP 399 (603)
T COG1217 320 GKEGKFVTSRQIRDRLNKELETNVALRVEETESPDAFEVSGRGELHLSILIENMRREGFELQVSRPEVIIKEIDGVKCEP 399 (603)
T ss_pred CCCCCEEEHHHHHHHHHHHHHHCEEEEEEECCCCCEEEEECCCEEEHHHHHHHHHHCCEEEEECCCEEEEEECCCCCCCC
T ss_conf 76785655899999999876416359987369997379805644457888887642341777258659999238846685
Q ss_pred EEEEEEECCHHHHHHHHHHHHHCCCEECCCCCCCCCEEEEEEEECHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCC
Q ss_conf 68888731323310789988743540104213689849999996133565688998853276167888870530135787
Q gi|254780233|r 415 IEEVVIDVDEEHSGAVVQKMTLHKSEMIELRPSGTGRVRLVFLSPTRGLIGYQSQLMTDTRGTAIMNRLFHSYQPHKGEI 494 (624)
Q Consensus 415 ie~v~I~vp~ey~G~Vi~~l~~RrG~i~~m~~~~~g~~~l~~~vP~r~l~g~~~~l~s~T~G~g~~~~~f~~Y~p~~g~i 494 (624)
||+++|+||+||+|.||+.|+.|||+|.+|.+.++||+||+|.+|+||||||+++|+|+|+|+|+++|.|++|+||+|+|
T Consensus 400 ~E~v~iDv~ee~~G~Vie~lg~RKgem~~M~~~g~G~~Rlef~iPaRGLIGfrteFlt~TrG~Gi~n~~F~~Y~p~~g~i 479 (603)
T COG1217 400 FEEVTIDVPEEHQGAVIEKLGERKGEMKDMAPDGKGRVRLEFVIPARGLIGFRTEFLTMTRGTGIMNHSFDHYRPVKGEI 479 (603)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEECCCHHEEECCCCCEEEEECCCCCCCCCCCC
T ss_conf 01378637423201899987653576751535899859999972476501021110221456434321101345555654
Q ss_pred CCCCCEEEEECCCCCEEEEHHHHHHHHCCEEECCCCEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 87774258882898583003331232112262799854378286764675431034416650122136887326885599
Q gi|254780233|r 495 GGRSNGVLLSNEEGKVVAYALFNLEDRGSMIVEPGDKVYQGMIVGIHTRENDLDVNVLKGKKLTNMRASGKDEAVKLVPA 574 (624)
Q Consensus 495 ~~r~~G~lis~~~G~~~~yal~~lq~rG~~fv~pg~~vy~Gmivge~~r~~dl~vN~~k~k~ltn~r~~~~d~~~~l~~~ 574 (624)
++|.||+|||+++|++++|||++||+||.|||+||++||+|||||||+|+|||+|||||+||||||||+|+|++++|+||
T Consensus 480 ~~R~nGvLiS~~~G~a~~yal~~lqdRG~~Fi~pG~~vYeGmiiG~hsR~nDL~VN~~k~K~LTN~Rasg~Dea~~L~~p 559 (603)
T COG1217 480 GGRHNGVLISNETGKAVAYALFNLQDRGKLFIEPGTKVYEGMIIGEHSRDNDLTVNVLKGKKLTNMRASGKDEAVTLTPP 559 (603)
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHCCCEEECCCCCEEEEEEEEEECCCCCCEECCCCCCCCCCCCCCCCCCCEEECCC
T ss_conf 55545159976898434765535875375664599726501698530675671342423442312104687622574484
Q ss_pred CEEEHHHHHHHHHCCEEEEECCCCEEEEEECCCHHHHHHHHHHH
Q ss_conf 23339999888645839999887716763015965768888766
Q gi|254780233|r 575 VKMTLEQALSWIQNDELVEVTPKSIRLRKMYLDPNERKRKGKSV 618 (624)
Q Consensus 575 ~~~~le~~~~~i~~DelvevtP~~iR~RK~~l~~~~r~~~~k~~ 618 (624)
++||||+||+||++||||||||+||||||++|++++|||+.|++
T Consensus 560 ~~msLE~Ale~i~dDElvEVTP~sIRlRK~~L~~n~Rkr~~k~~ 603 (603)
T COG1217 560 IRMTLERALEFIADDELVEVTPESIRLRKKILNENERKRAEKRK 603 (603)
T ss_pred CCCCHHHHHHHCCCCCEEEECCHHEEHHHHHCCHHHHHHHHCCC
T ss_conf 10669999854587706996415702246656965654544069
No 3
>PRK10218 GTP-binding protein; Provisional
Probab=100.00 E-value=0 Score=1658.59 Aligned_cols=605 Identities=55% Similarity=0.873 Sum_probs=589.5
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCC
Q ss_conf 80243149998546898778899999983961423220000038857798709606467999998997999972898754
Q gi|254780233|r 15 GYMQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHAD 94 (624)
Q Consensus 15 ~~~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~D 94 (624)
+.++|||||||||||||||||+|+||++||++++++.+.+++|||+++||||||||+|++|++.|++|+|||||||||+|
T Consensus 1 ~ie~IRNiaIIAHvDhGKTTL~d~lL~~tG~~~~~~~~~~~~mD~~~~ErERGITI~a~~~~~~~~~~~iNiIDTPGH~D 80 (607)
T PRK10218 1 MIEKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHAD 80 (607)
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHCCCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCC
T ss_conf 97544248999756889889999999972898644541120147868898759726230489960878997865998543
Q ss_pred CHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCH
Q ss_conf 07999999874217899997687886478999999997299789999754366740256899999888622673011042
Q gi|254780233|r 95 FGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDF 174 (624)
Q Consensus 95 F~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~ 174 (624)
|+|||||+|+|+|||||||||++||||||+|||++|+++++|+|+|||||||++|+|++|++|++|||.+|+|+++||||
T Consensus 81 F~gEVeR~L~~~DGalLvVDA~eGv~pQT~~V~~~Al~~~l~~IvvINKiDr~~A~~~~V~~ei~dlfi~L~a~deqld~ 160 (607)
T PRK10218 81 FGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDF 160 (607)
T ss_pred CHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHCC
T ss_conf 01488978976684899997887862458999999998799759972166766553578999999887404985677444
Q ss_pred HHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCCCCCC-CCHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEE
Q ss_conf 66887886591646742233486413555321024542233-20000011110136777349999960780515988999
Q gi|254780233|r 175 PILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPPVIS-EGEFKMIGTILEKDPFLGRIVTGRIHSGTIKSNQNIKA 253 (624)
Q Consensus 175 Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~P~~~-e~pl~~~V~~i~~d~y~Gria~gRV~sGtlk~Gd~V~v 253 (624)
|++|+||++||+....+.. ..++.||||+|++++|+|..+ ++||+|+||+++||+|+|++++|||++|++++||+|++
T Consensus 161 Pi~~asa~~G~a~~~~~~~-~~dl~pLldaIv~~IPaP~~d~d~Plq~lV~~ldyD~YvGrI~igRV~sG~ik~Gd~V~~ 239 (607)
T PRK10218 161 PIVYASALNGIAGLDHEDM-AEDMTPLYQAIVDHVPAPDVDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPNQQVTI 239 (607)
T ss_pred HHHHHHHHCCEECCCHHHH-HHHCCHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCEEEEEEEECCEECCCCEEEE
T ss_conf 3556554065012682343-331360889998548798999888841010112356767648999996574858984366
Q ss_pred ECCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEECCCCCC
Q ss_conf 60578501211455301103665344411254554322223321012211055652112336666542157861268655
Q gi|254780233|r 254 LSPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSIAGLVKATVADTFCDPSIDEPLKAQPIDPPTVTMTFGVNDSPL 333 (624)
Q Consensus 254 l~~~g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIvaIaGl~~~~iGDTL~~~~~p~~Lp~i~i~~Ptis~~f~vn~sP~ 333 (624)
++.+++. +.+||+++|.+.|++++++++|.|||||||+|++++.||||||++++|.|||++++++||+||.|.||+|||
T Consensus 240 ~~~~g~~-~~~kV~kl~~~~gl~r~ev~~a~AGDIVAIaGl~d~~iGDTl~d~~~p~~Lp~~~i~ePtvsm~f~vn~sPf 318 (607)
T PRK10218 240 IDSEGKT-RNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGELNISDTVCDTQNVEALPALSVDEPTVSMFFCVNTSPF 318 (607)
T ss_pred ECCCCEE-EEEEEEEEEECCCCCCCCCCEECCEEEEEEECCCCCCCCCEECCCCCCCCCCCCCCCCCCCCEEEECCCCCC
T ss_conf 3279638-843467995115777400546524059999423357777652157765567666778996515761168776
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEECCHHHHHHHHHHHHHCCEEEECCCCEEEEEEECCEECC
Q ss_conf 44443210178899999997302837999985999759999636456888874123348033015744899820882604
Q gi|254780233|r 334 AGTEGDKVTSRMIRDRLFKEAEGNIALKIEESSSKDAFFVSGRGELQLAVLIETMRREGFELAVSRPRVVIKKEGDSLLE 413 (624)
Q Consensus 334 ag~eg~~~ts~~l~~rL~ke~~~dvsL~ve~~~~~~~~~v~GrGeLHL~IliE~mRREG~E~~vs~P~V~~k~~dg~~lE 413 (624)
||+||+++|+|++++||.||+++|+||+|++++++++|+|+|||+|||+||+||||||||||.||+|+|+||++||+++|
T Consensus 319 aG~egk~~t~r~i~erL~ke~~~nvsl~vee~~~~~~f~v~grGeLHLeIliErmrREG~El~vs~P~Viyre~dG~~~E 398 (607)
T PRK10218 319 CGKEGKFVTSRQILDRLNKELVHNVALRVEETEDADAFRVSGRGELHLSVLIENMRREGFELAVSRPKVIFREIDGRKQE 398 (607)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHHCCCEEEECCCCEEEEECCCCCCC
T ss_conf 66445420389999999876530762688706888647970442878999999986458479973883689913894618
Q ss_pred EEEEEEEECCHHHHHHHHHHHHHCCCEECCCCCCCCCEEEEEEEECHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCC-C
Q ss_conf 168888731323310789988743540104213689849999996133565688998853276167888870530135-7
Q gi|254780233|r 414 PIEEVVIDVDEEHSGAVVQKMTLHKSEMIELRPSGTGRVRLVFLSPTRGLIGYQSQLMTDTRGTAIMNRLFHSYQPHK-G 492 (624)
Q Consensus 414 Pie~v~I~vp~ey~G~Vi~~l~~RrG~i~~m~~~~~g~~~l~~~vP~r~l~g~~~~l~s~T~G~g~~~~~f~~Y~p~~-g 492 (624)
|||+++|+||+||+|.||++|++|||+|++|++.++||++|+|.+|+||||||+++|+|+|+|+|+|||.|++|+||+ |
T Consensus 399 P~e~~~I~vP~ey~G~Vme~l~~RrG~~~~M~~~~~grv~L~f~iPsRgLiG~r~~~lt~TrG~g~~~~~f~~y~~~~~g 478 (607)
T PRK10218 399 PYENVTLDVEEQHQGSVMQALGERKGDLKNMNPDGKGRVRLDYVIPSRGLIGFRSEFMTMTSGTGLLYSTFSHYDDVRPG 478 (607)
T ss_pred CEEEEEEEECHHHHHHHHHHHHHHCCEEEEEEECCCCEEEEEEECCCHHHCCCHHHEEECCCCEEEEEECCCCCCCCCCC
T ss_conf 70799997262554999999885177997558989997999997765354387254042477418998602256778788
Q ss_pred CCCCCCCEEEEECCCCCEEEEHHHHHHHHCCEEECCCCEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf 87877742588828985830033312321122627998543782867646754310344166501221368873268855
Q gi|254780233|r 493 EIGGRSNGVLLSNEEGKVVAYALFNLEDRGSMIVEPGDKVYQGMIVGIHTRENDLDVNVLKGKKLTNMRASGKDEAVKLV 572 (624)
Q Consensus 493 ~i~~r~~G~lis~~~G~~~~yal~~lq~rG~~fv~pg~~vy~Gmivge~~r~~dl~vN~~k~k~ltn~r~~~~d~~~~l~ 572 (624)
+|++|.+|+|||+++|++|+|||++||+||+|||+||++||+|||||||+|++||+|||||+||||||||+|+|++++|+
T Consensus 479 ~~~~r~~G~lis~~~g~~t~yal~~lq~rg~lfv~pg~~vy~GmivGe~~r~~dl~vN~~k~k~ltn~r~~~~d~~~~l~ 558 (607)
T PRK10218 479 EVGQRQNGVLISNGQGKAVAFALFGLQDRGKLFLGHGAEVYEGQIIGIHSRSNDLTVNCLTGKKLTNMRASGTDEAVVLV 558 (607)
T ss_pred CCCCCCCEEEEECCCCEEHHHHHHHHHHCCCEEECCCCCEECCEEEEEECCCCCCEECCCCCCCCCCCCCCCCCCCCEEC
T ss_conf 75666651379757761789877538754536736999668875867607867732445545445255455766562017
Q ss_pred CCCEEEHHHHHHHHHCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 9923339999888645839999887716763015965768888766664
Q gi|254780233|r 573 PAVKMTLEQALSWIQNDELVEVTPKSIRLRKMYLDPNERKRKGKSVNLE 621 (624)
Q Consensus 573 ~~~~~~le~~~~~i~~DelvevtP~~iR~RK~~l~~~~r~~~~k~~~~~ 621 (624)
||++||||+||+||++||||||||++|||||++||+++|||++|++|.+
T Consensus 559 p~~~~sle~~~~~i~~delvEvTP~~irlRK~~L~~~~R~~~~~~~k~~ 607 (607)
T PRK10218 559 PPIRMTLEQALEFIDDDELVEVTPTSIRIRKRHLTENDRRRANRAPKDD 607 (607)
T ss_pred CCCCCCHHHHHHHCCCCEEEEECCHHEEEEHHHCCHHHHHHHHHHHCCC
T ss_conf 9840799999853577757998773507642427986877755410259
No 4
>TIGR01393 lepA GTP-binding protein LepA; InterPro: IPR006297 LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function of the proteins in this family are unknown. ; GO: 0005525 GTP binding.
Probab=100.00 E-value=0 Score=1007.25 Aligned_cols=538 Identities=30% Similarity=0.408 Sum_probs=472.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEEC-C-----EEEEEECCC
Q ss_conf 2431499985468987788999999839614232200000388577987096064679999989-9-----799997289
Q gi|254780233|r 17 MQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWN-D-----VRINIVDTP 90 (624)
Q Consensus 17 ~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~-~-----~~iNiiDTP 90 (624)
.+||||+||||+|||||||+||||..||+++++. ..+++||+||+||||||||+|+.+.+.|+ . |.+||||||
T Consensus 1 ~~IRNFsIIAHIDHGKSTLADRlle~T~~~s~R~-m~~Q~LD~MDlERERGITIK~qaV~l~Yk~~~DGe~Y~LNLIDTP 79 (598)
T TIGR01393 1 KNIRNFSIIAHIDHGKSTLADRLLEKTGAVSERE-MREQVLDSMDLERERGITIKAQAVRLKYKVAKDGETYVLNLIDTP 79 (598)
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCHH-HHHCCCCCCCEEECCCCEEECCCEEEEEEEECCCCEEEEEEECCC
T ss_conf 9875267884624893248899998617456202-543057751000005820115634753375338878899645288
Q ss_pred CCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHH
Q ss_conf 87540799999987421789999768788647899999999729978999975436674025689999988862267301
Q gi|254780233|r 91 GHADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDA 170 (624)
Q Consensus 91 GH~DF~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de 170 (624)
||+||++||+|+|.+|+||||||||++|||+||-.++..|+|.+|.+|.||||||+|.|+|++|..||.|+ +-+++.|
T Consensus 80 GHVDFsYEVSRSLAACEGALL~VDA~QGvEAQT~aN~YlAlE~dLeIIPViNKIDLP~Adpe~v~~eIe~~-iGld~~~- 157 (598)
T TIGR01393 80 GHVDFSYEVSRSLAACEGALLLVDAAQGVEAQTLANVYLALENDLEIIPVINKIDLPSADPERVKKEIEEV-IGLDASE- 157 (598)
T ss_pred CCCCCCHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHH-CCCCCCC-
T ss_conf 97212737888888716403561410323588899998875618758477825368888858999987654-1889643-
Q ss_pred HCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCCCCCC-C-CHHHCCCCCCCCCCCCCEEEEEEECCCCCCCC
Q ss_conf 104266887886591646742233486413555321024542233-2-00000111101367773499999607805159
Q gi|254780233|r 171 QLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPPVIS-E-GEFKMIGTILEKDPFLGRIVTGRIHSGTIKSN 248 (624)
Q Consensus 171 ~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~P~~~-e-~pl~~~V~~i~~d~y~Gria~gRV~sGtlk~G 248 (624)
++.+|||+| .|++.|||+|++++|+|.++ + +||+++||+.+||+|+|.++++||+.|++++|
T Consensus 158 -----ai~~SAKtG-----------~Gi~e~LEaIv~~vPpP~Gd~~DapLkALIFDS~YD~YrGVv~~vRv~~G~ik~g 221 (598)
T TIGR01393 158 -----AILASAKTG-----------IGIEEILEAIVKRVPPPKGDPDDAPLKALIFDSHYDNYRGVVVLVRVFEGTIKKG 221 (598)
T ss_pred -----CEEEEECCC-----------CCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEEECEECCC
T ss_conf -----038750367-----------8889998897101810011388866322788435438650899999952686469
Q ss_pred CEEEEECCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCC-CC---CCCCCCCCEECCCCCC--CCCCCCCCCCCCE
Q ss_conf 8899960578501211455301103665344411254554322-22---3321012211055652--1123366665421
Q gi|254780233|r 249 QNIKALSPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSI-AG---LVKATVADTFCDPSID--EPLKAQPIDPPTV 322 (624)
Q Consensus 249 d~V~vl~~~g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIvaI-aG---l~~~~iGDTL~~~~~p--~~Lp~i~i~~Pti 322 (624)
|+|..|+. |+. ..|.++..+.=.-....+++.|||++.| || +.|++||||||+..+| +|||+++-..|+|
T Consensus 222 D~I~~Mst-gk~---y~V~evG~~~P~~~~~~~~L~aGeVGy~~AgIK~v~D~~VGDTiT~~~~Pa~eplpGF~~~KP~V 297 (598)
T TIGR01393 222 DKIRFMST-GKE---YEVDEVGVFTPKLEVKTQELSAGEVGYIIAGIKDVSDVKVGDTITSVKNPAKEPLPGFKEVKPMV 297 (598)
T ss_pred CEEEEEEC-CCE---EEEEEEEEECCCCCCCCCCEECCCEEEEEEEEEECCCEECCCEEECCCCCCCCCCCCCCCCCCEE
T ss_conf 88999534-876---66755003434520146620016305999865310411205445256787376788861257658
Q ss_pred EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCC---CEEEEEECCHHHHHHHHHHHHHC-CEEEECC
Q ss_conf 5786126865544443210178899999997302837999985999---75999963645688887412334-8033015
Q gi|254780233|r 323 TMTFGVNDSPLAGTEGDKVTSRMIRDRLFKEAEGNIALKIEESSSK---DAFFVSGRGELQLAVLIETMRRE-GFELAVS 398 (624)
Q Consensus 323 s~~f~vn~sP~ag~eg~~~ts~~l~~rL~ke~~~dvsL~ve~~~~~---~~~~v~GrGeLHL~IliE~mRRE-G~E~~vs 398 (624)
.--+ ..-|.+.. ..||++|.|+.+||.||.||++.|. .+|+|+|+|.|||||+.|||.|| +.++..|
T Consensus 298 FaGl-------YPid~~~Y--e~LrdALeKL~LNDAsL~yE~E~S~ALGFGFRCGFLGLLHmEiiqERLeREFnldlI~T 368 (598)
T TIGR01393 298 FAGL-------YPIDTEDY--EDLRDALEKLKLNDASLTYEPESSPALGFGFRCGFLGLLHMEIIQERLEREFNLDLITT 368 (598)
T ss_pred EECC-------CCCCCHHH--HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 6012-------58880346--89999975554402542102236300374043326663368999876544308706872
Q ss_pred CCEEEEEE--ECC------------------EECCEEEEEEEECCHHHHHHHHHHHHHCCCEECCCCCCCCCEEEEEEEE
Q ss_conf 74489982--088------------------2604168888731323310789988743540104213689849999996
Q gi|254780233|r 399 RPRVVIKK--EGD------------------SLLEPIEEVVIDVDEEHSGAVVQKMTLHKSEMIELRPSGTGRVRLVFLS 458 (624)
Q Consensus 399 ~P~V~~k~--~dg------------------~~lEPie~v~I~vp~ey~G~Vi~~l~~RrG~i~~m~~~~~g~~~l~~~v 458 (624)
.|.|.||. .|| ...|||.+++|.+|+||+|+||++|..|||.+.+|++.+..||.|.|++
T Consensus 369 AP~V~Y~V~~~~G~~~~v~nP~~~P~~~~I~~v~EPyv~~~IitP~ey~G~iM~LC~~KRG~~~~~~Y~d~~RV~L~Yem 448 (598)
T TIGR01393 369 APSVVYKVYLTDGEVIEVDNPSDLPDPNKIEHVEEPYVKATIITPSEYLGAIMELCQEKRGVQTNMEYLDPNRVELIYEM 448 (598)
T ss_pred CCCEEEEEEEECCCEEEEECCHHCCCCCCCCEEECCEEEEEEECCCCHHHHHHHHHHHCCEEEEEEEECCCCEEEEEEEC
T ss_conf 78159999970781899718300685015777844749999435830124688876301514634363189559999975
Q ss_pred CHHHHH-HHHHHHHHHCCCCEEEEEEEECCCC---CCCCCCCCCCEEEEECCCCCEEEEHHHHHHHHCCEEECCCCEEEC
Q ss_conf 133565-6889988532761678888705301---357878777425888289858300333123211226279985437
Q gi|254780233|r 459 PTRGLI-GYQSQLMTDTRGTAIMNRLFHSYQP---HKGEIGGRSNGVLLSNEEGKVVAYALFNLEDRGSMIVEPGDKVYQ 534 (624)
Q Consensus 459 P~r~l~-g~~~~l~s~T~G~g~~~~~f~~Y~p---~~g~i~~r~~G~lis~~~G~~~~yal~~lq~rG~~fv~pg~~vy~ 534 (624)
|..|++ +|+++|+|.|||||||+|+|.+|++ ++=+| || +|+.+. ||. ||.|-|..|.
T Consensus 449 PL~EI~~DFfDkLKS~skGYASfDYE~~~yr~~dLVKlDI-------L~---Nge~VD-ALS--------~IVH~d~A~~ 509 (598)
T TIGR01393 449 PLAEIVYDFFDKLKSISKGYASFDYELIGYRESDLVKLDI-------LI---NGEPVD-ALS--------FIVHRDKAYS 509 (598)
T ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEE-------EE---CCCCCC-EEE--------EECCCHHHHH
T ss_conf 7530633010632022235321123213574326289999-------98---489433-687--------7123513588
Q ss_pred -CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEHHHHHHHHHCCEEEEECCCCE-EEEEECCCHHHHH
Q ss_conf -82867646754310344166501221368873268855992333999988864583999988771-6763015965768
Q gi|254780233|r 535 -GMIVGIHTRENDLDVNVLKGKKLTNMRASGKDEAVKLVPAVKMTLEQALSWIQNDELVEVTPKSI-RLRKMYLDPNERK 612 (624)
Q Consensus 535 -Gmivge~~r~~dl~vN~~k~k~ltn~r~~~~d~~~~l~~~~~~~le~~~~~i~~DelvevtP~~i-R~RK~~l~~~~r~ 612 (624)
|..+-+ |-|.| +..+.-+-+||.+...+...++.|..+++|.|.+|+..+| |.||++.+|+|+|
T Consensus 510 ~gr~~~~------------KLKE~--IPRQqF~ipIQA~IG~KIIARETiKa~RKdVtAKCYGGDiTRKrKLLEKQKEGK 575 (598)
T TIGR01393 510 RGREIVE------------KLKEL--IPRQQFEIPIQAAIGGKIIARETIKALRKDVTAKCYGGDITRKRKLLEKQKEGK 575 (598)
T ss_pred HHHHHHH------------HHHHC--CCCCCCCCCHHEECCCEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9999998------------86622--863466641102218806875035412255023520877043245455210210
Q ss_pred HHHHHHH
Q ss_conf 8887666
Q gi|254780233|r 613 RKGKSVN 619 (624)
Q Consensus 613 ~~~k~~~ 619 (624)
|+||+.-
T Consensus 576 KRMK~~G 582 (598)
T TIGR01393 576 KRMKQIG 582 (598)
T ss_pred HHCCCCC
T ss_conf 3215777
No 5
>KOG0462 consensus
Probab=100.00 E-value=0 Score=986.33 Aligned_cols=556 Identities=29% Similarity=0.385 Sum_probs=520.6
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECC---EEEEEECCCC
Q ss_conf 8024314999854689877889999998396142322000003885779870960646799999899---7999972898
Q gi|254780233|r 15 GYMQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWND---VRINIVDTPG 91 (624)
Q Consensus 15 ~~~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~---~~iNiiDTPG 91 (624)
..+|||||+||||||||||||+|+||.+||++. +....+++||++++||||||||+|+++|+.|++ |.+|+|||||
T Consensus 56 P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~-~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPG 134 (650)
T KOG0462 56 PVENIRNFSIIAHVDHGKSTLADRLLELTGTID-NNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPG 134 (650)
T ss_pred CHHHCCCEEEEEEECCCCCHHHHHHHHHHCCCC-CCCCHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCEEEEEECCCC
T ss_conf 066313137999842770168999999828778-8875566424544566528478751237999758732887505898
Q ss_pred CCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 75407999999874217899997687886478999999997299789999754366740256899999888622673011
Q gi|254780233|r 92 HADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQ 171 (624)
Q Consensus 92 H~DF~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ 171 (624)
|+||+|||+|+|+|||||||||||.+|||+||.+++.+|+++||.+|+||||+|+|.||+++|.++++++|....+
T Consensus 135 HvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~---- 210 (650)
T KOG0462 135 HVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADPERVENQLFELFDIPPA---- 210 (650)
T ss_pred CCCCCCEEHEHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCC----
T ss_conf 5555410001265357159999767681288999999999859748886531578988989999999998668961----
Q ss_pred CCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCCCCCC-CCHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCE
Q ss_conf 04266887886591646742233486413555321024542233-20000011110136777349999960780515988
Q gi|254780233|r 172 LDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPPVIS-EGEFKMIGTILEKDPFLGRIVTGRIHSGTIKSNQN 250 (624)
Q Consensus 172 ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~P~~~-e~pl~~~V~~i~~d~y~Gria~gRV~sGtlk~Gd~ 250 (624)
+++|+||++|| +++.||++|++++|+|... ++||+|++|+.+||.|+|+|+++||.+|.+++||+
T Consensus 211 ---~~i~vSAK~G~-----------~v~~lL~AII~rVPpP~~~~d~plr~Lifds~yD~y~G~I~~vrv~~G~vrkGdk 276 (650)
T KOG0462 211 ---EVIYVSAKTGL-----------NVEELLEAIIRRVPPPKGIRDAPLRMLIFDSEYDEYRGVIALVRVVDGVVRKGDK 276 (650)
T ss_pred ---CEEEEEECCCC-----------CHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEEEEEEECCCE
T ss_conf ---24888702575-----------6888999999637999888885167776663354425358999986344621878
Q ss_pred EEEECCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCC-CCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 9996057850121145530110366534441125455432222-332101221105565211233666654215786126
Q gi|254780233|r 251 IKALSPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSIAG-LVKATVADTFCDPSIDEPLKAQPIDPPTVTMTFGVN 329 (624)
Q Consensus 251 V~vl~~~g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIvaIaG-l~~~~iGDTL~~~~~p~~Lp~i~i~~Ptis~~f~vn 329 (624)
|..+.. ++. ...+...++.+......+++.+.+|+|++..+ ++++.|||||++.....++|.++-.+|+.+|+| +|
T Consensus 277 V~~~~t-~~~-yev~~vgvm~p~~~~~~~l~agqvGyIi~~mr~~~ea~IGdTi~~~~~~~~v~tl~~~~~~~pMvF-vg 353 (650)
T KOG0462 277 VQSAAT-GKS-YEVKVVGVMRPEMTPVVELDAGQVGYIICNMRNVKEAQIGDTIAHKSVTKAVETLPGFEPTKPMVF-VG 353 (650)
T ss_pred EEEEEC-CCC-EEEEEEEEECCCCEEEEEECCCCCCEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEE-EC
T ss_conf 888613-760-676775776357614323214542536750446654500230000035764675788888762488-53
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCC---CEEEEEECCHHHHHHHHHHHHHC-CEEEECCCCEEEEE
Q ss_conf 865544443210178899999997302837999985999---75999963645688887412334-80330157448998
Q gi|254780233|r 330 DSPLAGTEGDKVTSRMIRDRLFKEAEGNIALKIEESSSK---DAFFVSGRGELQLAVLIETMRRE-GFELAVSRPRVVIK 405 (624)
Q Consensus 330 ~sP~ag~eg~~~ts~~l~~rL~ke~~~dvsL~ve~~~~~---~~~~v~GrGeLHL~IliE~mRRE-G~E~~vs~P~V~~k 405 (624)
.+|+.|.| |.+ ++++++|++.+|.+..+++..++ .+|+|+|+|.|||+|++|||+|| |+|+.+++|.|.||
T Consensus 354 ~fP~dgsd--~~~---l~~a~erL~lnd~sv~v~~~~s~aLg~gwr~gflG~LHm~Vf~erle~Eyg~elivt~PtV~Yr 428 (650)
T KOG0462 354 LFPLDGSD--YET---LRDAIERLVLNDESVTVIKESSGALGQGWRLGFLGLLHMEVFIERLEREYGAELIVTPPTVPYR 428 (650)
T ss_pred CCCCCCCH--HHH---HHHHHHHHHCCCCCCEEEECCCCCCCCCEEEECCCEEEHHHHHHHHHHHCCCEEEECCCCCEEE
T ss_conf 66676205--555---7779998751550114552477300364586031212389999878886195366438963279
Q ss_pred EECCE--------------------ECCEEEEEEEECCHHHHHHHHHHHHHCCCEECCCCCCCCCEEEEEEEECHHHHHH
Q ss_conf 20882--------------------6041688887313233107899887435401042136898499999961335656
Q gi|254780233|r 406 KEGDS--------------------LLEPIEEVVIDVDEEHSGAVVQKMTLHKSEMIELRPSGTGRVRLVFLSPTRGLIG 465 (624)
Q Consensus 406 ~~dg~--------------------~lEPie~v~I~vp~ey~G~Vi~~l~~RrG~i~~m~~~~~g~~~l~~~vP~r~l~g 465 (624)
.+.+. .+||+++++|.+|+||+|+||++|+.|||++.+|.+.+..|+.|.|.+|+|+|.|
T Consensus 429 ~~~~~~~~~~i~np~~fp~~~~v~~~lEP~v~~tii~P~Ey~G~Vi~Lc~~rRgeq~dm~~i~~nr~~lky~lPl~elv~ 508 (650)
T KOG0462 429 VVYSNGDEILISNPALFPDPSDVKEFLEPYVEATIITPDEYVGAVIELCSERRGEQKDMTYIDGNRVMLKYQLPLRELVG 508 (650)
T ss_pred EEECCCCEEEECCHHHCCCCCCCHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHHEECCEECCCCEEEEEEECCHHHHHH
T ss_conf 98458862552285338982233011175579999776898899999998722100032441587699999567688899
Q ss_pred -HHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCEEEEECCCCCEEEEHHHHHHHHCCEEECCCCEEECCEEEEEECCC
Q ss_conf -8899885327616788887053013578787774258882898583003331232112262799854378286764675
Q gi|254780233|r 466 -YQSQLMTDTRGTAIMNRLFHSYQPHKGEIGGRSNGVLLSNEEGKVVAYALFNLEDRGSMIVEPGDKVYQGMIVGIHTRE 544 (624)
Q Consensus 466 -~~~~l~s~T~G~g~~~~~f~~Y~p~~g~i~~r~~G~lis~~~G~~~~yal~~lq~rG~~fv~pg~~vy~Gmivge~~r~ 544 (624)
|+..|+|.|+|+|+|+++|++|+ ++++-...-+.+.++..|.+|.+++..+++||++||.++-+.|.+|++++|.+.
T Consensus 509 df~~~lks~tsGyAs~dye~~gY~--~sdLvkldil~n~~~vd~l~tivh~~~a~~rGr~~v~klk~~ip~Q~~ev~iqa 586 (650)
T KOG0462 509 DFFDRLKSLTSGYASFDYEDAGYQ--ASDLVKLDILLNGKMVDGLSTIVHLSKAESRGREFVQKLKDLIPRQIFEVHIQA 586 (650)
T ss_pred HHHHHHHCCCCCEEEEEECCCCCC--CCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 999887403655057762135665--455157776403102456777878987999999999876664412432121364
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEHHHHHHHHHCCEEEEECCCCEEEEE
Q ss_conf 43103441665012213688732688559923339999888645839999887716763
Q gi|254780233|r 545 NDLDVNVLKGKKLTNMRASGKDEAVKLVPAVKMTLEQALSWIQNDELVEVTPKSIRLRK 603 (624)
Q Consensus 545 ~dl~vN~~k~k~ltn~r~~~~d~~~~l~~~~~~~le~~~~~i~~DelvevtP~~iR~RK 603 (624)
-+...|++|++-. +..+|...++.+|..+.++.+|++..+|++.++||++||++|
T Consensus 587 ~igsk~iare~i~----a~rKdv~akl~ggdv~r~~klL~~q~egkk~mk~vgnI~ipk 641 (650)
T KOG0462 587 CIGSKNIARETIS----AYRKDVLAKLYGGDVTRLKKLLKKQAEGKKRMKTVGNIRIPK 641 (650)
T ss_pred HCCCCHHHHHHHH----HHCCCEEEEECCCCHHHHHHHHHHHHCCCEEEECCCCEECCH
T ss_conf 2363055689998----735561567658732459999876643855663255274377
No 6
>PRK05433 GTP-binding protein LepA; Provisional
Probab=100.00 E-value=0 Score=929.19 Aligned_cols=543 Identities=30% Similarity=0.431 Sum_probs=467.9
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEEC-----CEEEEEEC
Q ss_conf 6802431499985468987788999999839614232200000388577987096064679999989-----97999972
Q gi|254780233|r 14 LGYMQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWN-----DVRINIVD 88 (624)
Q Consensus 14 ~~~~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~-----~~~iNiiD 88 (624)
|+.++||||+||||||||||||+|+||+.||++++.+ ..+++||++++||||||||+|+++++.|+ +|.+||||
T Consensus 2 ~~~~~IRNf~IiAHIDhGKSTLaDrlL~~tg~i~~~~-~~~q~lD~m~~ErERGITIka~~v~~~y~~~~g~~y~lNLID 80 (601)
T PRK05433 2 MDMKNIRNFSIIAHIDHGKSTLADRLIELTGTLSERE-MKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYQLNLID 80 (601)
T ss_pred CCHHCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCCC-CHHHCCCCHHHHHHCCCEEEEEEEEEEEECCCCCEEEEEEEC
T ss_conf 6332045589999437888889999999709977443-233314541557655836978679999884899679999854
Q ss_pred CCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 89875407999999874217899997687886478999999997299789999754366740256899999888622673
Q gi|254780233|r 89 TPGHADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDAT 168 (624)
Q Consensus 89 TPGH~DF~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~ 168 (624)
||||+||++||+|+|++||||||||||++||||||.++|++|++++|++|+||||||+|+|++++|.+|+.++| .++++
T Consensus 81 TPGHVDF~~EVsRSL~aceGalLlVDa~qGVqaQT~an~~~A~~~~L~iIpviNKIDlp~Ad~e~v~~qi~~~i-gl~~~ 159 (601)
T PRK05433 81 TPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPERVKQEIEDII-GIDAS 159 (601)
T ss_pred CCCCCCCCEEEEEEHHHCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHH-CCCHH
T ss_conf 89856645045560334072599997687856006999999998799657778614688899899999999886-89647
Q ss_pred HHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCCCCCC-CCHHHCCCCCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf 01104266887886591646742233486413555321024542233-20000011110136777349999960780515
Q gi|254780233|r 169 DAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPPVIS-EGEFKMIGTILEKDPFLGRIVTGRIHSGTIKS 247 (624)
Q Consensus 169 de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~P~~~-e~pl~~~V~~i~~d~y~Gria~gRV~sGtlk~ 247 (624)
+ ++++||++| .|+++|||+|++++|+|..+ ++||+++||+.+||+|+|.++++||++|+|++
T Consensus 160 e------il~vSAKtG-----------~GV~~lLdaIV~~iP~P~gd~~~PL~ALIFDS~yD~YrGvV~~vRV~~G~lk~ 222 (601)
T PRK05433 160 D------AVLVSAKTG-----------IGIEEVLEAIVERIPPPKGDPDAPLKALIFDSWYDPYRGVVVLVRVVDGTLKK 222 (601)
T ss_pred H------HHHHHHHCC-----------CCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEEEECCEECC
T ss_conf 7------777752338-----------88799999999747999999873431201230304678807999940887725
Q ss_pred CCEEEEECCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCC-CC---CCCCCCCCEECCCCCC--CCCCCCCCCCCC
Q ss_conf 98899960578501211455301103665344411254554322-22---3321012211055652--112336666542
Q gi|254780233|r 248 NQNIKALSPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSI-AG---LVKATVADTFCDPSID--EPLKAQPIDPPT 321 (624)
Q Consensus 248 Gd~V~vl~~~g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIvaI-aG---l~~~~iGDTL~~~~~p--~~Lp~i~i~~Pt 321 (624)
||++..++. +.. .+|.++-.+ ..++.+++++.||+++.| +| +.++.+|||||+..+| .|||+++.++|+
T Consensus 223 Gd~I~~~~t-~~~---~~v~evGi~-~p~~~~~~~L~aGeVGyiiagiK~~~d~~vGDTit~~~~~~~~pLpGf~~~kP~ 297 (601)
T PRK05433 223 GDKIKMMST-GKE---YEVDEVGVF-TPKMVPVDELSAGEVGYIIAGIKDVRDARVGDTITLAKNPAEEPLPGFKEVKPM 297 (601)
T ss_pred CCEEEEECC-CCE---EEEEEEECC-CCCCCCCCEECCCCEEEEEECCCCHHHCCCCCEEECCCCCCCCCCCCCCCCCCE
T ss_conf 852564126-971---672024256-898527450137844799824544432334760554777775346778899986
Q ss_pred EEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCC---CEEEEEECCHHHHHHHHHHHHHC-CEEEEC
Q ss_conf 15786126865544443210178899999997302837999985999---75999963645688887412334-803301
Q gi|254780233|r 322 VTMTFGVNDSPLAGTEGDKVTSRMIRDRLFKEAEGNIALKIEESSSK---DAFFVSGRGELQLAVLIETMRRE-GFELAV 397 (624)
Q Consensus 322 is~~f~vn~sP~ag~eg~~~ts~~l~~rL~ke~~~dvsL~ve~~~~~---~~~~v~GrGeLHL~IliE~mRRE-G~E~~v 397 (624)
+...+.+.+ +. ++ .+|+++|.|+.++|+||.++++.+. .+|+|+|+|+|||+|+.|||+|| |.++.+
T Consensus 298 Vfagi~P~~----~~--d~---~~Lr~AL~KL~LnD~Sl~~e~Ets~aLG~GfRcGFLGlLHmeIi~ERLeREf~~~vI~ 368 (601)
T PRK05433 298 VFAGLYPVD----SD--DY---EDLRDALEKLQLNDASLTYEPETSQALGFGFRCGFLGLLHMEIIQERLEREFDLDLIT 368 (601)
T ss_pred EEECCCCCC----HH--HH---HHHHHHHHHHHHCCCCEEEEECCCHHHCCCCHHCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 997234277----00--68---9999999988635775376314544432762113430677999999999872984684
Q ss_pred CCCEEEEEE--ECC------------------EECCEEEEEEEECCHHHHHHHHHHHHHCCCEECCCCCCCCCEEEEEEE
Q ss_conf 574489982--088------------------260416888873132331078998874354010421368984999999
Q gi|254780233|r 398 SRPRVVIKK--EGD------------------SLLEPIEEVVIDVDEEHSGAVVQKMTLHKSEMIELRPSGTGRVRLVFL 457 (624)
Q Consensus 398 s~P~V~~k~--~dg------------------~~lEPie~v~I~vp~ey~G~Vi~~l~~RrG~i~~m~~~~~g~~~l~~~ 457 (624)
|+|.|.||. .|| .+.|||.+++|.+|+||+|.||++|..|||++.+|++.+++|+.+.|+
T Consensus 369 TaPsV~Y~v~~~~g~~~~v~nP~~~Pd~~~i~~i~EP~v~~~I~~P~ey~G~vm~Lc~~rRG~~~~~~y~~~~rv~l~y~ 448 (601)
T PRK05433 369 TAPSVVYEVTLTDGEVIEVDNPSKLPDPGKIEEIEEPIVKATIIVPQEYLGAVMELCQEKRGVQIDMEYLGNTRVMLTYE 448 (601)
T ss_pred ECCCEEEEEEECCCCEEEEECHHHCCCCCCCEEEECCEEEEEEECCHHHHHHHHHHHHHHHCEEECCCCCCCCEEEEEEE
T ss_conf 27956899997799799996856568866521898566899996638988999999998532653141367875999995
Q ss_pred ECHHHHH-HHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCEEEEECCCCCEEEEHHHHHHHHCCEEECCCCEEECCE
Q ss_conf 6133565-688998853276167888870530135787877742588828985830033312321122627998543782
Q gi|254780233|r 458 SPTRGLI-GYQSQLMTDTRGTAIMNRLFHSYQPHKGEIGGRSNGVLLSNEEGKVVAYALFNLEDRGSMIVEPGDKVYQGM 536 (624)
Q Consensus 458 vP~r~l~-g~~~~l~s~T~G~g~~~~~f~~Y~p~~g~i~~r~~G~lis~~~G~~~~yal~~lq~rG~~fv~pg~~vy~Gm 536 (624)
+|.+|++ +|+++|+|.|+|||+|+|+|.+|++- .-.+-..|| +|+.+. ||. ||-|.+..|.
T Consensus 449 lPL~Eii~DFfDkLKS~s~GYAS~dYe~~~y~~s----dLvKldIli---Ng~~Vd-als--------~i~h~~~a~~-- 510 (601)
T PRK05433 449 LPLAEIVFDFFDRLKSVSRGYASLDYEFIGYRES----DLVKLDILI---NGEPVD-ALS--------FIVHRDKAYE-- 510 (601)
T ss_pred CCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCC----CEEEEEEEE---CCCCCC-HHH--------HHHHHHHHHH--
T ss_conf 6589998878787541165515760210344516----878999998---885424-665--------1122888999--
Q ss_pred EEEEECCCCCCCCCCC-CCCCCCCCCCCCCCEEEEECCCCEEEHHHHHHHHHCCEEEEECCCCE-EEEEECCCHHHHHHH
Q ss_conf 8676467543103441-66501221368873268855992333999988864583999988771-676301596576888
Q gi|254780233|r 537 IVGIHTRENDLDVNVL-KGKKLTNMRASGKDEAVKLVPAVKMTLEQALSWIQNDELVEVTPKSI-RLRKMYLDPNERKRK 614 (624)
Q Consensus 537 ivge~~r~~dl~vN~~-k~k~ltn~r~~~~d~~~~l~~~~~~~le~~~~~i~~DelvevtP~~i-R~RK~~l~~~~r~~~ 614 (624)
..-..| |-|++ +..+.-+-+||.+..-+....+.|...+.|.+..|+..+| |.||.+.+|+++||+
T Consensus 511 ----------~gr~~~~kLk~~--IPrq~f~v~IQA~ig~kiiAreti~a~RKdVtaKcyGGDitRK~KLLekQkeGKkr 578 (601)
T PRK05433 511 ----------RGRALVEKLKEL--IPRQQFEIPIQAAIGSKIIARETIKALRKDVLAKCYGGDISRKRKLLEKQKEGKKR 578 (601)
T ss_pred ----------HHHHHHHHHHHH--CCHHHCCCHHHHHHCCEEEEEECCCHHHCCEEEECCCCCHHHHHHHHHHHHHHHHH
T ss_conf ----------999999999855--88744144776756786899321513206423351389816889999998652687
Q ss_pred HHHHH
Q ss_conf 87666
Q gi|254780233|r 615 GKSVN 619 (624)
Q Consensus 615 ~k~~~ 619 (624)
+|+..
T Consensus 579 mk~iG 583 (601)
T PRK05433 579 MKQIG 583 (601)
T ss_pred HHHCC
T ss_conf 87158
No 7
>PRK00007 elongation factor G; Reviewed
Probab=100.00 E-value=0 Score=880.20 Aligned_cols=457 Identities=30% Similarity=0.493 Sum_probs=410.4
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCC--EECCCCHHHHHCCCEEEEEEEEEEECC-EEEEEECCC
Q ss_conf 68024314999854689877889999998396142322000--003885779870960646799999899-799997289
Q gi|254780233|r 14 LGYMQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSE--RVMDCNDLEKERGITILAKVTSIVWND-VRINIVDTP 90 (624)
Q Consensus 14 ~~~~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~--~vmD~~~~EreRGITI~a~~~~~~~~~-~~iNiiDTP 90 (624)
..-+|||||||+||+|||||||+|+|||.||.+++.|++++ ++||++++||||||||+|..+++.|++ |+|||||||
T Consensus 5 ~~ie~IRNi~IiaHvd~GKTTL~e~lL~~sg~i~~~G~v~~g~t~~D~~~~E~eRgITI~s~~~s~~~~~~~~iNlIDTP 84 (693)
T PRK00007 5 TPLERYRNIGIMAHIDAGKTTTTERILFYTGVSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDGHRINIIDTP 84 (693)
T ss_pred CCHHHCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCHHHHHCCCCEEECEEEEEECCCEEEEEEECC
T ss_conf 96678709999916999989999999996698465842438985567828899769887322254882697389999197
Q ss_pred CCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHH------
Q ss_conf 87540799999987421789999768788647899999999729978999975436674025689999988862------
Q gi|254780233|r 91 GHADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLFSA------ 164 (624)
Q Consensus 91 GH~DF~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~------ 164 (624)
||+||++||+|+|+++||||+||||++|||+||+++|++|.+.++|+|+|||||||++|+|..+++++.+.|..
T Consensus 85 GHvDF~~Ev~~aLrv~DgAvlVvDav~GV~~qT~~v~r~a~~~~lp~i~fINK~Dr~~ad~~~~l~~i~~~l~~~~~~~~ 164 (693)
T PRK00007 85 GHVDFTIEVERSLRVLDGAVAVFCAVGGVEPQSETVWRQADKYKVPRIVFVNKMDRTGADFLRVVEQIKDRLGANPVPIQ 164 (693)
T ss_pred CCCCHHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf 97524899999999858689999889887777999999998759896999979778999989999999998599768998
Q ss_pred ---------------------------CC-----------------------------CCHHHCC---------------
Q ss_conf ---------------------------26-----------------------------7301104---------------
Q gi|254780233|r 165 ---------------------------LD-----------------------------ATDAQLD--------------- 173 (624)
Q Consensus 165 ---------------------------l~-----------------------------a~de~ld--------------- 173 (624)
.+ .+|+.++
T Consensus 165 ~pi~~~~~f~g~vdl~~~~~~~~~~~~~g~~~~~~~~p~~~~~~~~~~r~~l~e~vae~dd~lle~yl~~~~~~~~el~~ 244 (693)
T PRK00007 165 LPIGAEDDFKGVVDLVKMKAIIWDDDDLGTTFEYEEIPADLKDKAEEYREKLVEAAAEADEELMEKYLEGEELTEEEIKA 244 (693)
T ss_pred EEECCCCCCCCEEEEEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHH
T ss_conf 40024776433033000013321333468713770185899999999999999999854999999985578899999999
Q ss_pred -----------HHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCCCC---------------------CCCCHHHC
Q ss_conf -----------2668878865916467422334864135553210245422---------------------33200000
Q gi|254780233|r 174 -----------FPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPPV---------------------ISEGEFKM 221 (624)
Q Consensus 174 -----------~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~P~---------------------~~e~pl~~ 221 (624)
+|++++||+. +.|+.+|||+|++++|+|. ++++||.+
T Consensus 245 ~lr~~~~~~~~~Pv~~gsa~~-----------~~Gv~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~pl~a 313 (693)
T PRK00007 245 ALRKGTLANEIVPVLCGSAFK-----------NKGVQPMLDAVVDYLPSPLDVPAIKGILPDGEEEEVERKASDDEPFSA 313 (693)
T ss_pred HHHHHHHHCCEEEHHCCCCCC-----------CCCHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCEEEECCCCCCCCEE
T ss_conf 999988727656610265434-----------878999999999867992125650020689874035642698777146
Q ss_pred CCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11110136777349999960780515988999605785012114553011036653444112545543222233210122
Q gi|254780233|r 222 IGTILEKDPFLGRIVTGRIHSGTIKSNQNIKALSPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSIAGLVKATVAD 301 (624)
Q Consensus 222 ~V~~i~~d~y~Gria~gRV~sGtlk~Gd~V~vl~~~g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIvaIaGl~~~~iGD 301 (624)
+|||+.+|||.|+++|+||+||+|+.|+.|++... .+..||++||.++|.++.+++++.|||||+++|++++.+||
T Consensus 314 ~vfK~~~dp~~G~ls~~RV~SGtl~~g~~v~n~~~----~~~e~i~~l~~~~g~~~~~v~~~~AGdIvai~gL~~~~tgd 389 (693)
T PRK00007 314 LAFKIMTDPFVGKLTFFRVYSGVLNSGSYVLNSTK----GKKERIGRILQMHANKREEIKEVRAGDIAAAVGLKDTTTGD 389 (693)
T ss_pred EEEEEEECCCCCCEEEEEECCCCCCCCCEEECCCC----CCCCCCCCEEEEECCCCCEEEEECCCCEEEEECCCCEEECC
T ss_conf 87556774899826889822572368986314654----32113563389855885160077279648985334305255
Q ss_pred EECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEECCHHHH
Q ss_conf 11055652112336666542157861268655444432101788999999973028379999859997599996364568
Q gi|254780233|r 302 TFCDPSIDEPLKAQPIDPPTVTMTFGVNDSPLAGTEGDKVTSRMIRDRLFKEAEGNIALKIEESSSKDAFFVSGRGELQL 381 (624)
Q Consensus 302 TL~~~~~p~~Lp~i~i~~Ptis~~f~vn~sP~ag~eg~~~ts~~l~~rL~ke~~~dvsL~ve~~~~~~~~~v~GrGeLHL 381 (624)
|||++..+..++++.+++|++++++.+.+ ..| ..+|.++|.++.++||+|+|+.++++++++++|+|||||
T Consensus 390 Tl~~~~~~~~l~~~~~p~Pv~~~aieP~~----~~d-----~~kL~~aL~~L~~eDPsl~v~~~eetge~vl~g~GElHL 460 (693)
T PRK00007 390 TLCDPDNPIILERMEFPEPVISVAVEPKT----KAD-----QEKMGIALGKLAEEDPSFRVSTDEESGQTIIAGMGELHL 460 (693)
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEECCC----HHH-----HHHHHHHHHHHHHHCCEEEEEEECCCCCEEEECCCHHHH
T ss_conf 31476776534544589864316885497----677-----999999999878449738999907887189985789999
Q ss_pred HHHHHHHHHC-CEEEECCCCEEEEEEE-----------------------------------------------------
Q ss_conf 8887412334-8033015744899820-----------------------------------------------------
Q gi|254780233|r 382 AVLIETMRRE-GFELAVSRPRVVIKKE----------------------------------------------------- 407 (624)
Q Consensus 382 ~IliE~mRRE-G~E~~vs~P~V~~k~~----------------------------------------------------- 407 (624)
+|++++|||+ |.|+.+++|+|.|||.
T Consensus 461 ei~~~rL~~~f~vev~~~~P~V~yrETI~~~~~~~~~~~kqsgg~gq~~~v~i~~eP~~~g~g~~f~~~i~gg~ip~~~~ 540 (693)
T PRK00007 461 DIIVDRMKREFKVEANVGKPQVAYRETIRKSVEVEGKFKKQSGGRGQYGHVVIELEPLEPGKGYEFENKIVGGVVPKEYI 540 (693)
T ss_pred HHHHHHHHHHHCCCEEECCCCEEEEEEECCCCEEEEEEEEECCCCCCEEEEEEEEECCCCCCCCEEEECCCCCCCCHHHH
T ss_conf 99999998770983460488236898742641025799885288772679999995388897855730245676778887
Q ss_pred -----------------------------CC-----------------------------EECCEEEEEEEECCHHHHHH
Q ss_conf -----------------------------88-----------------------------26041688887313233107
Q gi|254780233|r 408 -----------------------------GD-----------------------------SLLEPIEEVVIDVDEEHSGA 429 (624)
Q Consensus 408 -----------------------------dg-----------------------------~~lEPie~v~I~vp~ey~G~ 429 (624)
|| .+||||+.++|.||++|+|+
T Consensus 541 ~av~~G~~~a~~~GpL~g~pv~~vkv~l~dg~~h~vds~~~af~~A~~~a~~~a~~~a~p~LlEPi~~veI~~p~~~~G~ 620 (693)
T PRK00007 541 PAVDKGIQEAMKSGVLAGYPVVDVKVTLFDGSYHDVDSSEMAFKIAGSMAFKEAAKKANPVLLEPIMKVEVVTPEDYMGD 620 (693)
T ss_pred HHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEEEECHHHHHH
T ss_conf 88999999999709825785431599998067557887468999999999999998669889768379999948899899
Q ss_pred HHHHHHHCCCEECCCCCCCCCEEEEEEEECHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCC
Q ss_conf 899887435401042136898499999961335656889988532761678888705301357878
Q gi|254780233|r 430 VVQKMTLHKSEMIELRPSGTGRVRLVFLSPTRGLIGYQSQLMTDTRGTAIMNRLFHSYQPHKGEIG 495 (624)
Q Consensus 430 Vi~~l~~RrG~i~~m~~~~~g~~~l~~~vP~r~l~g~~~~l~s~T~G~g~~~~~f~~Y~p~~g~i~ 495 (624)
||++|++|||++++|++.+. ...+.+.+|.++++||.++|||+|+|+|+|++.|+||+|+|+++.
T Consensus 621 V~~dL~~RRG~i~~~~~~~~-~~~I~a~vP~~E~~gy~~~LRs~T~G~g~~~~~F~~y~~vP~~~~ 685 (693)
T PRK00007 621 VIGDLNSRRGQIQGMEDRGG-AKVIRAEVPLSEMFGYATDLRSMTQGRATYSMEFDHYEEVPKNVA 685 (693)
T ss_pred HHHHHHHCCCEEECEEECCC-CEEEEEEECHHHHHCHHHHHHHHCCCCEEEEEEECCCCCCCHHHH
T ss_conf 99999876988746263399-099999988788628579978538893589999486643998899
No 8
>PRK13351 elongation factor G; Reviewed
Probab=100.00 E-value=0 Score=853.91 Aligned_cols=460 Identities=32% Similarity=0.518 Sum_probs=415.9
Q ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCC--EECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCC
Q ss_conf 468024314999854689877889999998396142322000--003885779870960646799999899799997289
Q gi|254780233|r 13 RLGYMQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSE--RVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTP 90 (624)
Q Consensus 13 ~~~~~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~--~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTP 90 (624)
.+..++|||||||||+|||||||+|+||+.+|.+++.|.+++ ++||++++||||||||+|..+++.|++++|||||||
T Consensus 2 ~~~~e~IRNi~IiaHvd~GKTTL~d~Ll~~~g~i~~~g~v~~g~t~~D~~~~E~eRgITikss~~sl~~~~~~iNlIDTP 81 (687)
T PRK13351 2 EMPLMQIRNIGIMAHIDAGKTTLTERILFYTGKIHKMGSVEDGNTVSDWMPQEQERGISIESAAATCDWKNHRINLIDTP 81 (687)
T ss_pred CCCHHHCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEEEEEEEEEECCEEEEEEECC
T ss_conf 99868930899991799898999999999749987587154787447882999974987762159998899899998097
Q ss_pred CCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHC-----
Q ss_conf 875407999999874217899997687886478999999997299789999754366740256899999888622-----
Q gi|254780233|r 91 GHADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLFSAL----- 165 (624)
Q Consensus 91 GH~DF~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l----- 165 (624)
||+||++||+|+|+++||||+||||++||++||+++|++|.+.++|+|+|||||||..++++.+++++.+.|..-
T Consensus 82 GHvDF~~Ev~~aLr~~DgallVVDaveGv~~qT~~v~r~a~~~~lp~il~iNK~DR~~~d~~~~l~~i~~~l~~~~~~~~ 161 (687)
T PRK13351 82 GHIDFTGEVERSLRVLDGAVVVIDAVTGVQPQTETVWEQADKYKIPRLIFINKMDRVGADLFDVLEDIEEKFGKRPLPLQ 161 (687)
T ss_pred CCCCHHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf 97430999999999878689999789998688999999999879985999979778998766778899998489647786
Q ss_pred ---------------------------------------------------------CCCHHHC----------------
Q ss_conf ---------------------------------------------------------6730110----------------
Q gi|254780233|r 166 ---------------------------------------------------------DATDAQL---------------- 172 (624)
Q Consensus 166 ---------------------------------------------------------~a~de~l---------------- 172 (624)
..+|+.+
T Consensus 162 ~p~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~lle~~l~~~~~~~~~l~~ 241 (687)
T PRK13351 162 LPIGSGDSFEGVVDLITEKELHFKEGDGGDTVEERPIPEELLEEVASAREKLIDALLEFDDELLELYLEGEEITAEQLRA 241 (687)
T ss_pred ECCCCCCCCCCEEEECCCHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHH
T ss_conf 00135655564166311012200245568505772562888999999999999999830899999987488788999999
Q ss_pred ----------CHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCCCC-------------------CCCCHHHCCC
Q ss_conf ----------42668878865916467422334864135553210245422-------------------3320000011
Q gi|254780233|r 173 ----------DFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPPV-------------------ISEGEFKMIG 223 (624)
Q Consensus 173 ----------d~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~P~-------------------~~e~pl~~~V 223 (624)
-+|++++||+.+ .|+.+|||+|++++|+|. ++++|+.++|
T Consensus 242 ~l~~~~~~~~~~Pv~~gsa~~~-----------~Gv~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~p~~a~V 310 (687)
T PRK13351 242 PFRRGLRSGHLVPVLFGSALKN-----------IGIRPLLDAVVEYLPSPLEGNPPAGSKGTEKKVLVNPDPEKPLLALV 310 (687)
T ss_pred HHHHHHHHCCCCHHHCCCCCCC-----------CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 9999998487241230303358-----------78588999998708992103454565666640014579998708999
Q ss_pred CCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 11013677734999996078051598899960578501211455301103665344411254554322223321012211
Q gi|254780233|r 224 TILEKDPFLGRIVTGRIHSGTIKSNQNIKALSPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSIAGLVKATVADTF 303 (624)
Q Consensus 224 ~~i~~d~y~Gria~gRV~sGtlk~Gd~V~vl~~~g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIvaIaGl~~~~iGDTL 303 (624)
||+.+|++.|+++++||+||+|+.|++|++..++ ...||++||.++|.+++++++|.|||||+++|++++.+||||
T Consensus 311 ~K~~~~~~~g~~s~~RV~sGtL~~g~~v~~~~~~----~~e~i~~l~~~~g~~~~~v~~~~aG~Iv~i~gl~~~~~g~tl 386 (687)
T PRK13351 311 FKVQYDPYAGKLTYLRVYQGTLRSGSQLYNGSGR----KREKVGRIFRLQGNKREEVDEAKAGDIVAVAGLKELETGDTL 386 (687)
T ss_pred EEEEECCCCCEEEEEEEECCEECCCCEEEECCCC----CEEEECCEEEECCCCCCCCCEECCCCEEEEECCCCCCCCCEE
T ss_conf 9978748897589999853454579877634898----359967614642677541488677988999587647568870
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEECCHHHHHH
Q ss_conf 05565211233666654215786126865544443210178899999997302837999985999759999636456888
Q gi|254780233|r 304 CDPSIDEPLKAQPIDPPTVTMTFGVNDSPLAGTEGDKVTSRMIRDRLFKEAEGNIALKIEESSSKDAFFVSGRGELQLAV 383 (624)
Q Consensus 304 ~~~~~p~~Lp~i~i~~Ptis~~f~vn~sP~ag~eg~~~ts~~l~~rL~ke~~~dvsL~ve~~~~~~~~~v~GrGeLHL~I 383 (624)
|+++.+..++++++++|++++++.+.+ ..| ..+|.++|.++.++||+|+|+.+++++++.++|+|||||++
T Consensus 387 ~~~~~~~~~~~~~~~~Pv~~vaieP~~----~~d-----~~kL~~aL~~L~~eDPsl~v~~~eetge~vi~g~GElHLe~ 457 (687)
T PRK13351 387 HDEEGNVHLEPLTFPEPVFSLAVEPER----RGD-----EQKLAEALEKLVWEDPTLRVEEDEETGQTILSGMGELHLEI 457 (687)
T ss_pred CCCCCCCCCCCCCCCCCCEEEEEEECC----HHH-----HHHHHHHHHHHHHHCCCEEEEECCCCEEEEEECCCHHHHHH
T ss_conf 589987568999999985167688678----136-----88999999999853983799983754188765888999999
Q ss_pred HHHHHHHC-CEEEECCCCEEEEEEEC------------------------------------------------------
Q ss_conf 87412334-80330157448998208------------------------------------------------------
Q gi|254780233|r 384 LIETMRRE-GFELAVSRPRVVIKKEG------------------------------------------------------ 408 (624)
Q Consensus 384 liE~mRRE-G~E~~vs~P~V~~k~~d------------------------------------------------------ 408 (624)
++++|||+ |.|+.+|+|+|.|||.-
T Consensus 458 ~l~~L~~~f~vev~vs~p~V~yrETi~~~~~~~~~~~k~~~~~~~~~~v~l~~eP~~~g~g~~~~~~~~~g~~~~~~~~a 537 (687)
T PRK13351 458 ALERLRREFKLEVNTGKPQVAYRETIRKMAEGVYRHKKQFGGKGQFGEVHLRVEPLERGAGFEFVSKVVGGAVPEELIPA 537 (687)
T ss_pred HHHHHHHHHCCCEEEECCCCEEEEEECCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCEEECCCCCCCCCHHHHHH
T ss_conf 99988887198458528830278640256422225765048876322799997246678750881465688685667789
Q ss_pred ---------------------------------------------------------CEECCEEEEEEEECCHHHHHHHH
Q ss_conf ---------------------------------------------------------82604168888731323310789
Q gi|254780233|r 409 ---------------------------------------------------------DSLLEPIEEVVIDVDEEHSGAVV 431 (624)
Q Consensus 409 ---------------------------------------------------------g~~lEPie~v~I~vp~ey~G~Vi 431 (624)
..+||||++++|.||++|+|+|+
T Consensus 538 I~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~V~ 617 (687)
T PRK13351 538 VEKGIREALASGPLAGYPVTDLRVTVLDGKYHSVDSSESAFVKAARKAFLEAVRKANPVLLEPIMELEITVPTEHVGDVL 617 (687)
T ss_pred HHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEECCEEEEEEEECHHHHHHHH
T ss_conf 99999999963966899525069999826878888876789999999999999856988977828999996889999999
Q ss_pred HHHHHCCCEECCCCCCCCCEEEEEEEECHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCC
Q ss_conf 98874354010421368984999999613356568899885327616788887053013578787
Q gi|254780233|r 432 QKMTLHKSEMIELRPSGTGRVRLVFLSPTRGLIGYQSQLMTDTRGTAIMNRLFHSYQPHKGEIGG 496 (624)
Q Consensus 432 ~~l~~RrG~i~~m~~~~~g~~~l~~~vP~r~l~g~~~~l~s~T~G~g~~~~~f~~Y~p~~g~i~~ 496 (624)
++|++|||+++++++.+++.+.+.+.+|.++++||.++||++|+|+|+|++.|+||+|+|+++..
T Consensus 618 ~~L~~RRG~i~~~~~~~~~~~~I~a~vPv~e~~g~~~~LRs~T~G~a~~~~~F~~~e~vP~~~~~ 682 (687)
T PRK13351 618 GDLSQRRGKIHGTEPIGDGKVLVKAEAPLAELFGYATRLRSMTKGRGSFTMEFSHFDPVPPAVQK 682 (687)
T ss_pred HHHHHCCCEEECCEECCCCEEEEEEEECHHHHHCHHHHHHHCCCCCEEEEEEECCCCCCCHHHHH
T ss_conf 99986698886727459976999999886786086687463088836999995755239999999
No 9
>PRK12740 elongation factor G; Reviewed
Probab=100.00 E-value=0 Score=850.77 Aligned_cols=448 Identities=31% Similarity=0.507 Sum_probs=404.2
Q ss_pred ECCCCCCHHHHHHHHHHHCCCCCCCCCCCC--EECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHHHH
Q ss_conf 854689877889999998396142322000--003885779870960646799999899799997289875407999999
Q gi|254780233|r 25 IAHVDHGKTTLVDELLKQSGVFRDNQRVSE--RVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVERI 102 (624)
Q Consensus 25 iaHvDhGKTTL~d~LL~~sG~~~~~~~v~~--~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVer~ 102 (624)
|||||||||||+|+||+++|.+++.|++++ ++||++++||||||||+|+.+++.|++++|||||||||+||++||+|+
T Consensus 1 iaHvd~GKTTL~e~lL~~sg~i~~~G~v~~g~t~~D~~~~E~eRgITI~ss~~s~~~~~~~iNlIDTPGHvDF~~EV~~a 80 (670)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISIQSAATTCEWKGHKINIIDTPGHVDFTGEVERA 80 (670)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEEEEEEEEEECCEEEEEEECCCCCCHHHHHHHH
T ss_conf 98998888899999999659987576143897146780999973997322138898899899999297975148999999
Q ss_pred HHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHH------------------
Q ss_conf 87421789999768788647899999999729978999975436674025689999988862------------------
Q gi|254780233|r 103 LCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLFSA------------------ 164 (624)
Q Consensus 103 l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~------------------ 164 (624)
|+++||||+||||++||++||+++|++|.+.++|+|+|||||||+.++++++++++.+.|..
T Consensus 81 Lrv~DgAvlvVDaveGV~~qT~~v~r~a~~~~lp~ilvINKiDr~~a~~~~~l~~i~~~l~~~~~~~~~Pi~~~~~f~g~ 160 (670)
T PRK12740 81 LRVLDGAVVVVCAVGGVEVQTETVWRYAEEYGVPRIAFVNKLDRAGADFRRVLAQLQEALGAPVVPLQLPIGEGDDFKGV 160 (670)
T ss_pred HHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEE
T ss_conf 99868689999789997378999999999879996999979789999989999999998489835798550478844578
Q ss_pred --C----------------------------------------CCCHHHCC--------------------------HHH
Q ss_conf --2----------------------------------------67301104--------------------------266
Q gi|254780233|r 165 --L----------------------------------------DATDAQLD--------------------------FPI 176 (624)
Q Consensus 165 --l----------------------------------------~a~de~ld--------------------------~Pv 176 (624)
+ ..+|+.++ +|+
T Consensus 161 iDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lle~i~e~dd~lle~yl~~~~~~~~~l~~~l~~~~~~~~~~Pv 240 (670)
T PRK12740 161 VDLLSMKAYRYDDEGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEGEEPSEEEIKAGLRKGTRAGSIVPV 240 (670)
T ss_pred EECCCCEEEEECCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCEEEE
T ss_conf 52203568998278994377238788999999999999999874259999998767999999999999999970975789
Q ss_pred HHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCCCC-------------------CCCCHHHCCCCCCCCCCCCCEEEE
Q ss_conf 8878865916467422334864135553210245422-------------------332000001111013677734999
Q gi|254780233|r 177 LYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPPV-------------------ISEGEFKMIGTILEKDPFLGRIVT 237 (624)
Q Consensus 177 ~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~P~-------------------~~e~pl~~~V~~i~~d~y~Gria~ 237 (624)
+++||+. +.|+.+|||+|++++|+|. ++++||.++|||+.+|+|.|++++
T Consensus 241 ~~gSa~~-----------~~Gv~~LLd~I~~~lPsP~e~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~d~~~G~i~~ 309 (670)
T PRK12740 241 FCGSALK-----------NKGVQRLLDAVVDYLPSPTEVPPRLGTDGEDEEPVLAPDPDGPLSALVFKTMDDPFVGKLSL 309 (670)
T ss_pred EECCCCC-----------CCCHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEE
T ss_conf 8625435-----------77889999999987899254254114477776321457999982899998478588974899
Q ss_pred EEECCCCCCCCCEEEEECCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCC
Q ss_conf 99607805159889996057850121145530110366534441125455432222332101221105565211233666
Q gi|254780233|r 238 GRIHSGTIKSNQNIKALSPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSIAGLVKATVADTFCDPSIDEPLKAQPI 317 (624)
Q Consensus 238 gRV~sGtlk~Gd~V~vl~~~g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIvaIaGl~~~~iGDTL~~~~~p~~Lp~i~i 317 (624)
+||+||+|+.||.|++.+.+ +..||++||.++|.++.++++|.|||||+++|++++.+|||||++..+.+++++.+
T Consensus 310 ~RV~sG~L~~g~~v~~~~~~----~~eki~~l~~~~g~~~~~v~~~~aG~Iv~i~gl~~~~tgdTL~~~~~~~~~~~~~~ 385 (670)
T PRK12740 310 VRVYSGTLKKGDTLLNSTTG----KKERVGRLYRMHGKQQEEIDEAVAGDIVAVVKLKEAATGDTLCDKGDPILLEPMEF 385 (670)
T ss_pred EEEECCEECCCCEEEECCCC----CEEEEEEEEEECCCCCEEEEEEECCCEEEEECCCCCCCCCEECCCCCCCCCCCCCC
T ss_conf 99836675589989835875----15871235787157624889980597899845666635886107887765677778
Q ss_pred CCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEECCHHHHHHHHHHHHHC-CEEEE
Q ss_conf 65421578612686554444321017889999999730283799998599975999963645688887412334-80330
Q gi|254780233|r 318 DPPTVTMTFGVNDSPLAGTEGDKVTSRMIRDRLFKEAEGNIALKIEESSSKDAFFVSGRGELQLAVLIETMRRE-GFELA 396 (624)
Q Consensus 318 ~~Ptis~~f~vn~sP~ag~eg~~~ts~~l~~rL~ke~~~dvsL~ve~~~~~~~~~v~GrGeLHL~IliE~mRRE-G~E~~ 396 (624)
++|++++++.+.+ ..|. .+|.++|.++.++||+|+++.++++++++++|+|||||+|++++|||+ |.|+.
T Consensus 386 ~~Pv~~vaieP~~----~~d~-----~kL~~~L~~L~~eDPsl~v~~~~etge~vl~g~GElHLei~l~~Lr~~f~iev~ 456 (670)
T PRK12740 386 PEPVISLAIEPKD----KGDE-----EKLSEALGRLAEEDPTLRVEQDEETGETILSGMGELHLEVALERLKRKYGVEVE 456 (670)
T ss_pred CCCCCEEEEEECC----HHHH-----HHHHHHHHHHHHHCCCEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHCCEEE
T ss_conf 9986306888578----2179-----999999997774189559998177712799837989999999999898696699
Q ss_pred CCCCEEEEEEE---------------------------------------------------------------------
Q ss_conf 15744899820---------------------------------------------------------------------
Q gi|254780233|r 397 VSRPRVVIKKE--------------------------------------------------------------------- 407 (624)
Q Consensus 397 vs~P~V~~k~~--------------------------------------------------------------------- 407 (624)
+|+|+|.|||.
T Consensus 457 ~s~P~V~yrETi~~~~~~~~~~kkqsgg~gq~~~v~~~~eP~~~g~g~~f~~~i~gg~ip~~~~~ai~~G~~~a~~~GpL 536 (670)
T PRK12740 457 TGPPQVPYRETIRKAAEGHGRHKKQSGGHGQFGDVWLEIEPLPRGSGFEFVDKVVGGAVPRQYIPAVEKGVREALEKGVL 536 (670)
T ss_pred EECCCEEEEEEECCCCCCCCEEEEECCCCCCEEEEEEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 83683468998414412440577741786404589999735788877479874038856788899999899999972975
Q ss_pred -------------CC-----------------------------EECCEEEEEEEECCHHHHHHHHHHHHHCCCEECCCC
Q ss_conf -------------88-----------------------------260416888873132331078998874354010421
Q gi|254780233|r 408 -------------GD-----------------------------SLLEPIEEVVIDVDEEHSGAVVQKMTLHKSEMIELR 445 (624)
Q Consensus 408 -------------dg-----------------------------~~lEPie~v~I~vp~ey~G~Vi~~l~~RrG~i~~m~ 445 (624)
|| .+||||++++|.||++|+|+|+++|++|||++++|+
T Consensus 537 ~g~pv~~v~v~l~dg~~h~vdSs~~af~~A~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~V~~~L~~RRG~i~~~~ 616 (670)
T PRK12740 537 AGFPVVDVKVTLTDGSYHSVDSSEMAFKIAARLAFREAMPKAKPVLLEPIMRVEVSVPEEFVGDVIGDLSGRRGQILGME 616 (670)
T ss_pred CCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEEEECHHHHHHHHHHHHHCCCEEECEE
T ss_conf 78965335999984671577873789999999999999986698897681899999788999999999987698875737
Q ss_pred CCCCCEEEEEEEECHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCC
Q ss_conf 3689849999996133565688998853276167888870530135787877
Q gi|254780233|r 446 PSGTGRVRLVFLSPTRGLIGYQSQLMTDTRGTAIMNRLFHSYQPHKGEIGGR 497 (624)
Q Consensus 446 ~~~~g~~~l~~~vP~r~l~g~~~~l~s~T~G~g~~~~~f~~Y~p~~g~i~~r 497 (624)
+.+ |++.+.+.+|.++++||.++||++|+|+|+|++.|+||+|+||++..+
T Consensus 617 ~~~-g~~~I~a~vP~~e~~g~~~~LRs~T~G~a~~~~~f~~y~~vp~~~~~~ 667 (670)
T PRK12740 617 AEG-GWDVVRAEVPLAEMFGYATDLRSLTQGRGSFTMEFSHYEEVPGNVAEK 667 (670)
T ss_pred ECC-CEEEEEEEECHHHHHCHHHHHHHHCCCCEEEEEEECCCEECCCCHHHH
T ss_conf 429-959999998878861678986742888468999948732688266748
No 10
>PRK12739 elongation factor G; Reviewed
Probab=100.00 E-value=0 Score=835.11 Aligned_cols=460 Identities=32% Similarity=0.512 Sum_probs=409.4
Q ss_pred CCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCC--EECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECC
Q ss_conf 3468024314999854689877889999998396142322000--00388577987096064679999989979999728
Q gi|254780233|r 12 GRLGYMQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSE--RVMDCNDLEKERGITILAKVTSIVWNDVRINIVDT 89 (624)
Q Consensus 12 ~~~~~~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~--~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDT 89 (624)
..+..+|||||+|+||||||||||+|+||+.+|.+++.|++++ ++||++++||||||||.|..+++.|++++||||||
T Consensus 3 ~~~~~e~IRNi~IvaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~s~~~~~~~iNLIDT 82 (693)
T PRK12739 3 REFPLEKTRNIGIMAHIDAGKTTTTERILFYTGKIHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWKDHRINIIDT 82 (693)
T ss_pred CCCCHHHCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCHHHHHCCCCEEECEEEEEECCEEEEEEEC
T ss_conf 87857881399999079989899999999976985657334389756878099987598674552778459989999949
Q ss_pred CCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHH-----
Q ss_conf 987540799999987421789999768788647899999999729978999975436674025689999988862-----
Q gi|254780233|r 90 PGHADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLFSA----- 164 (624)
Q Consensus 90 PGH~DF~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~----- 164 (624)
|||+||++||+|+|+++||||+||||++||++||+.+|++|.+.++|+|+|||||||..++++.+++++.+.+-.
T Consensus 83 PGHvDF~~EV~~alrv~DgalvvVDaveGV~~qT~~v~rqa~~~~lp~il~iNKiDR~~ad~~~~~~~i~~~l~~~~~~~ 162 (693)
T PRK12739 83 PGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGADFFRVVEQIKDRLGANAVPI 162 (693)
T ss_pred CCCCHHHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf 69740589999999984879999978988767799999999986989699997978899998999999999858977999
Q ss_pred ---C-------------------------CC-----------------------------CHHHC---------------
Q ss_conf ---2-------------------------67-----------------------------30110---------------
Q gi|254780233|r 165 ---L-------------------------DA-----------------------------TDAQL--------------- 172 (624)
Q Consensus 165 ---l-------------------------~a-----------------------------~de~l--------------- 172 (624)
+ +. +|..+
T Consensus 163 ~~pi~~~~~f~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~v~e~dd~l~e~~l~~~~~~~~~l~ 242 (693)
T PRK12739 163 QLPIGAEDDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAETDEELMEKYLEGEEITEEEIK 242 (693)
T ss_pred ECCCCCCCCCCCEEEEECCEEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 74220365533114310057888504557983378107688999999999999999986528999998558778899999
Q ss_pred -----------CHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCCCC--------------------CCCCHHHC
Q ss_conf -----------42668878865916467422334864135553210245422--------------------33200000
Q gi|254780233|r 173 -----------DFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPPV--------------------ISEGEFKM 221 (624)
Q Consensus 173 -----------d~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~P~--------------------~~e~pl~~ 221 (624)
-+|++++|++ .+.|+.+|||+|++++|+|. ++++||.+
T Consensus 243 ~~l~~~~~~~~~~Pv~~gs~~-----------~~~gv~~Lld~I~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~p~~a 311 (693)
T PRK12739 243 AAIRKATINMEFFPVLCGSAF-----------KNKGVQPLLDAVVDYLPSPLDIPAIKGINPDTGEEVERPASDDEPFAA 311 (693)
T ss_pred HHHHHHHHHCCCCCCEECCCC-----------CCCCHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCEEEECCCCCCCCEE
T ss_conf 999999983760020323200-----------387899999999976899122344334478876423503699988389
Q ss_pred CCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11110136777349999960780515988999605785012114553011036653444112545543222233210122
Q gi|254780233|r 222 IGTILEKDPFLGRIVTGRIHSGTIKSNQNIKALSPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSIAGLVKATVAD 301 (624)
Q Consensus 222 ~V~~i~~d~y~Gria~gRV~sGtlk~Gd~V~vl~~~g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIvaIaGl~~~~iGD 301 (624)
+|||+.+|||.|+++++||+||+|++|+.|++.+ ..+..||++||.++|.++.+++++.|||||++.|++++.+||
T Consensus 312 ~v~K~~~d~~~G~ia~~RV~sGtl~~g~~v~n~~----~~~~~ki~~l~~~~g~~~~~v~~~~aG~Iv~i~Gl~~~~tgd 387 (693)
T PRK12739 312 LAFKIMTDPFVGRLTFFRVYSGTLESGSYVLNTT----KGKKERIGRLLQMHANKREEIKEVYAGDIGAAVGLKDTTTGD 387 (693)
T ss_pred EEEEEEECCCCCCEEEEECCCCEECCCCEEECCC----CCCEEECCEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCC
T ss_conf 9999888489981789993477146999896467----642243040478626874152176489769996444541378
Q ss_pred EECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEECCHHHH
Q ss_conf 11055652112336666542157861268655444432101788999999973028379999859997599996364568
Q gi|254780233|r 302 TFCDPSIDEPLKAQPIDPPTVTMTFGVNDSPLAGTEGDKVTSRMIRDRLFKEAEGNIALKIEESSSKDAFFVSGRGELQL 381 (624)
Q Consensus 302 TL~~~~~p~~Lp~i~i~~Ptis~~f~vn~sP~ag~eg~~~ts~~l~~rL~ke~~~dvsL~ve~~~~~~~~~v~GrGeLHL 381 (624)
|||+++.+..++++.+++|++++++.+.+ ..| -.+|.++|.++..+||+|+++.++++++++++|+|||||
T Consensus 388 tl~~~~~~~~~~~~~~p~Pv~~vaIeP~~----~~d-----~~kL~~~L~~L~~~DPsl~v~~~eetGE~vl~g~GElHL 458 (693)
T PRK12739 388 TLCDEKAPIILESMEFPEPVISLAVEPKS----KAD-----QDKMGIALQKLAEEDPTFRVETDEETGQTIISGMGELHL 458 (693)
T ss_pred EECCCCCCCCCCCCCCCCCCEEEEEEECC----HHH-----HHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEECCHHHH
T ss_conf 72389876446644578873358998487----768-----999999998742459836999807788189992599999
Q ss_pred HHHHHHHHHC-CEEEECCCCEEEEEEE-----------------------------------------------------
Q ss_conf 8887412334-8033015744899820-----------------------------------------------------
Q gi|254780233|r 382 AVLIETMRRE-GFELAVSRPRVVIKKE----------------------------------------------------- 407 (624)
Q Consensus 382 ~IliE~mRRE-G~E~~vs~P~V~~k~~----------------------------------------------------- 407 (624)
++++++|||+ |.|+.+|+|.|.|||.
T Consensus 459 e~~l~~L~~~f~vev~~s~P~V~yrETi~~~~~~~~~~~k~s~g~~~~~~v~l~~eP~~~~~~~~f~~~i~gg~ip~~~~ 538 (693)
T PRK12739 459 DIIVDRMKREFKVEANVGAPQVAYRETITKSVEAEGKYKKQSGGRGQYGDVWIEFEPNEEGKGFEFVNKIVGGVIPKEYI 538 (693)
T ss_pred HHHHHHHHHHHCCCEEEECCCCEEEEEECCCCCEEEEEEECCCCCCCEEEEEEEECCCCCCCCCEEEECCCCCCCCHHHH
T ss_conf 99999999986985475167533898850454305799742699861269999975677788866754155785778887
Q ss_pred -----------------------------CC-----------------------------EECCEEEEEEEECCHHHHHH
Q ss_conf -----------------------------88-----------------------------26041688887313233107
Q gi|254780233|r 408 -----------------------------GD-----------------------------SLLEPIEEVVIDVDEEHSGA 429 (624)
Q Consensus 408 -----------------------------dg-----------------------------~~lEPie~v~I~vp~ey~G~ 429 (624)
|| .+||||++++|.||++|+|.
T Consensus 539 ~sv~~Gf~~a~~~GpL~~~pv~~v~~~l~d~~~h~vds~~~~f~~a~~~a~~~a~~~A~p~LlEPi~~~eI~~p~~~~g~ 618 (693)
T PRK12739 539 PAVEKGLEEAMKNGVLAGYPMVDVKATLYDGSYHDVDSSEMAFKIAASMALKEAAKKAGPVILEPIMKVEVVTPEEYMGD 618 (693)
T ss_pred HHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEECCEEEEEEEECHHHHHH
T ss_conf 66789999999728835785550599996265047888457899999999999998559889756289999978899999
Q ss_pred HHHHHHHCCCEECCCCCCCCCEEEEEEEECHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCC
Q ss_conf 8998874354010421368984999999613356568899885327616788887053013578787
Q gi|254780233|r 430 VVQKMTLHKSEMIELRPSGTGRVRLVFLSPTRGLIGYQSQLMTDTRGTAIMNRLFHSYQPHKGEIGG 496 (624)
Q Consensus 430 Vi~~l~~RrG~i~~m~~~~~g~~~l~~~vP~r~l~g~~~~l~s~T~G~g~~~~~f~~Y~p~~g~i~~ 496 (624)
|+++|++|||++.++++.+ |...+.+.+|.++++||.++||+.|+|+|.+++.|+||+|++|++..
T Consensus 619 V~~~L~~RRG~i~~~~~~~-g~~~I~a~iPv~e~fgf~~~LR~~T~G~a~~~~~F~~y~~vp~~~~~ 684 (693)
T PRK12739 619 VIGDLNRRRGQIEGMEARG-GAQIVKAFVPLAEMFGYATDLRSATQGRATFSMEFDHYEEVPKSIAE 684 (693)
T ss_pred HHHHHHHCCCEEECEEECC-CCEEEEEEECHHHHHCHHHHHHHHCCCCEEEEEEECCCCCCCHHHHH
T ss_conf 9999987689875627449-90999999887886277899884388954899996886239978999
No 11
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=0 Score=837.42 Aligned_cols=458 Identities=33% Similarity=0.558 Sum_probs=409.6
Q ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCC--EECCCCHHHHHCCCEEEEEEEEEEECC-EEEEEECC
Q ss_conf 468024314999854689877889999998396142322000--003885779870960646799999899-79999728
Q gi|254780233|r 13 RLGYMQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSE--RVMDCNDLEKERGITILAKVTSIVWND-VRINIVDT 89 (624)
Q Consensus 13 ~~~~~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~--~vmD~~~~EreRGITI~a~~~~~~~~~-~~iNiiDT 89 (624)
.+.+++||||+|+||+|||||||+|+|||.+|.+++.|++.+ ++||++++||||||||.|+++++.|++ ++||||||
T Consensus 4 ~~~~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDT 83 (697)
T COG0480 4 LMPLERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDT 83 (697)
T ss_pred CCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCEEEEEEEEEEECCCEEEEEECC
T ss_conf 45544540799996047880778899998759757785566786547887889866977864056899708658999579
Q ss_pred CCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHH-----
Q ss_conf 987540799999987421789999768788647899999999729978999975436674025689999988862-----
Q gi|254780233|r 90 PGHADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLFSA----- 164 (624)
Q Consensus 90 PGH~DF~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~----- 164 (624)
|||+||++||+|+|+++|||++||||++|++|||+.||++|.++++|+|+|||||||..|++..+..++++-|..
T Consensus 84 PGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~~~~~~v 163 (697)
T COG0480 84 PGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLGADFYLVVEQLKERLGANPVPV 163 (697)
T ss_pred CCCCCCHHHHHHHHHHHCCEEEEEECCCCEEECHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEE
T ss_conf 97353477879988861650999988788300379999998655997599997843355673350999999867983223
Q ss_pred ---CCCC---------------------------------------------------HHHC------------------
Q ss_conf ---2673---------------------------------------------------0110------------------
Q gi|254780233|r 165 ---LDAT---------------------------------------------------DAQL------------------ 172 (624)
Q Consensus 165 ---l~a~---------------------------------------------------de~l------------------ 172 (624)
.++. |+.+
T Consensus 164 ~~pIg~~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~de~l~e~yl~g~e~~~~~i~~~i 243 (697)
T COG0480 164 QLPIGAEEEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEAREKLLEALAEFDEELMEKYLEGEEPTEEEIKKAL 243 (697)
T ss_pred ECCCCCCCCCCCEEEHHHCCEEEECCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 21115730047636711067179757752431558778876789999999998861579999998668876479999999
Q ss_pred --------CHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCCCC---------------------CCCCHHHCCC
Q ss_conf --------42668878865916467422334864135553210245422---------------------3320000011
Q gi|254780233|r 173 --------DFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPPV---------------------ISEGEFKMIG 223 (624)
Q Consensus 173 --------d~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~P~---------------------~~e~pl~~~V 223 (624)
.+|++++||. ++.|+.+|||+|++|+|+|. .+++||.++|
T Consensus 244 ~~~~~~~~~~pvl~gsa~-----------kn~gv~~lLdav~~~lPsP~e~~~~~g~~~~~~~~~~~~~~~~e~p~~a~v 312 (697)
T COG0480 244 RKGTIAGKIVPVLCGSAF-----------KNKGVQPLLDAVVDYLPSPLDVPPIKGDLDDEIEKAVLRKASDEGPLSALV 312 (697)
T ss_pred HHHHHCCCEEEEEEEEEC-----------CCCCHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCHHCCCCCCCCCEEEEE
T ss_conf 876532662567750102-----------577579999999987899566454447677532300004688888659999
Q ss_pred CCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 11013677734999996078051598899960578501211455301103665344411254554322223321012211
Q gi|254780233|r 224 TILEKDPFLGRIVTGRIHSGTIKSNQNIKALSPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSIAGLVKATVADTF 303 (624)
Q Consensus 224 ~~i~~d~y~Gria~gRV~sGtlk~Gd~V~vl~~~g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIvaIaGl~~~~iGDTL 303 (624)
||+.+|||.|+++++|||||+|++|+.|++.+. .+.+||.+|+.++|.++.+++++.||||+|+.|++++.+|||+
T Consensus 313 fKi~~d~~~g~l~~~RvysGtl~~G~~v~n~~~----~~~erv~~l~~~~~~~~~~v~~~~AG~I~a~~Gl~~~~tGdTl 388 (697)
T COG0480 313 FKIMTDPFVGKLTFVRVYSGTLKSGSEVLNSTK----GKKERVGRLLLMHGNEREEVDEVPAGDIVALVGLKDATTGDTL 388 (697)
T ss_pred EEEEECCCCCEEEEEEEECCEECCCCEEEECCC----CCCEEEEEEEECCCCCEEECCCCCCCCEEEEECCCCCCCCCEE
T ss_conf 996864878759999986437737988995799----8537877898716895026054057648999752355407856
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEECCHHHHHH
Q ss_conf 05565211233666654215786126865544443210178899999997302837999985999759999636456888
Q gi|254780233|r 304 CDPSIDEPLKAQPIDPPTVTMTFGVNDSPLAGTEGDKVTSRMIRDRLFKEAEGNIALKIEESSSKDAFFVSGRGELQLAV 383 (624)
Q Consensus 304 ~~~~~p~~Lp~i~i~~Ptis~~f~vn~sP~ag~eg~~~ts~~l~~rL~ke~~~dvsL~ve~~~~~~~~~v~GrGeLHL~I 383 (624)
|+...+..++++.+++|++++++.+.+ ..| ..+|.++|.+++++||+++++.++++++.+++|||||||+|
T Consensus 389 ~~~~~~v~~~~~~~pePVi~vavepk~----~~d-----~~Kl~~aL~~l~~eDPt~~v~~d~Etge~iIsGmGELHLei 459 (697)
T COG0480 389 CDENKPVILESMEFPEPVISVAVEPKT----KAD-----QEKLSEALNKLAEEDPTFRVETDEETGETIISGMGELHLEI 459 (697)
T ss_pred ECCCCCCCCCCCCCCCCEEEEEEEECC----HHH-----HHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEECCHHHHHH
T ss_conf 537876465665479964899976788----435-----89999999987753884589981776618998265554999
Q ss_pred HHHHHHHC-CEEEECCCCEEEEEEE-------------------------------------------------------
Q ss_conf 87412334-8033015744899820-------------------------------------------------------
Q gi|254780233|r 384 LIETMRRE-GFELAVSRPRVVIKKE------------------------------------------------------- 407 (624)
Q Consensus 384 liE~mRRE-G~E~~vs~P~V~~k~~------------------------------------------------------- 407 (624)
++++|+|+ |.|+.+++|+|.|||.
T Consensus 460 ~~drl~~~~~vev~~~~PqV~YrETi~~~~~~~~~~~kqsgg~~q~~~v~i~~EP~~~~~~~~f~~~i~~g~~P~~yi~~ 539 (697)
T COG0480 460 IVDRLKREFGVEVEVGKPQVAYRETIRKKSEVEGKHKKQSGGPGQYGHVYIEIEPLEDGSGFEFVDKIVGGVVPKEYIPA 539 (697)
T ss_pred HHHHHHHHCCCEEEECCCEEEEEEEECCCCCCEEEEEECCCCCCCCCEEEEEEEECCCCCCEEEEEHHCCCCCCHHHHHH
T ss_conf 99987764192589349816888661466543034530368898553799999758987641775000557672665477
Q ss_pred --------------------------------------------------------CCEECCEEEEEEEECCHHHHHHHH
Q ss_conf --------------------------------------------------------882604168888731323310789
Q gi|254780233|r 408 --------------------------------------------------------GDSLLEPIEEVVIDVDEEHSGAVV 431 (624)
Q Consensus 408 --------------------------------------------------------dg~~lEPie~v~I~vp~ey~G~Vi 431 (624)
...+||||++++|.+|+||+|+||
T Consensus 540 ve~G~~~a~~~GpLag~pv~dvkv~L~dgs~h~vdss~~af~~a~~~a~~~a~~~a~P~lLEPi~~veI~~P~d~~G~V~ 619 (697)
T COG0480 540 VEKGFREALKSGPLAGYPVVDVKVTLLDGSYHEVDSSEMAFKIAASLAFKEAMLKAKPVLLEPIMKVEITTPEEYMGDVI 619 (697)
T ss_pred HHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEECCEEEEEEECCHHHHCHHH
T ss_conf 89999999855987897157269999747504688888899999999999998607866855527999974346523168
Q ss_pred HHHHHCCCEECCCCCC-CCCEEEEEEEECHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCC
Q ss_conf 9887435401042136-89849999996133565688998853276167888870530135787
Q gi|254780233|r 432 QKMTLHKSEMIELRPS-GTGRVRLVFLSPTRGLIGYQSQLMTDTRGTAIMNRLFHSYQPHKGEI 494 (624)
Q Consensus 432 ~~l~~RrG~i~~m~~~-~~g~~~l~~~vP~r~l~g~~~~l~s~T~G~g~~~~~f~~Y~p~~g~i 494 (624)
++|++|||++++|+.. +.++..+++++|..+|+||.++|||+|+|+|.|+++|+||++.+..+
T Consensus 620 ~~l~~rRG~I~~~~~~~~~~~~~i~A~vPl~Emfgya~dLRs~T~Gra~~~m~f~~y~~vp~~~ 683 (697)
T COG0480 620 GDLNSRRGQILGMEQRPGGGLDVIKAEVPLAEMFGYATDLRSATQGRASFSMEFDHYEEVPSSV 683 (697)
T ss_pred HHHHHCCEEEECCEECCCCCEEEEEEEECHHHHCCCHHHHHHHCCCCEEEEEEECCCEECCHHH
T ss_conf 7663151598430422688459999983668854533666754568616999735127378889
No 12
>PRK07560 elongation factor EF-2; Reviewed
Probab=100.00 E-value=0 Score=823.94 Aligned_cols=467 Identities=30% Similarity=0.517 Sum_probs=398.5
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEE----EECCEEEEEECC
Q ss_conf 6802431499985468987788999999839614232200000388577987096064679999----989979999728
Q gi|254780233|r 14 LGYMQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSI----VWNDVRINIVDT 89 (624)
Q Consensus 14 ~~~~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~----~~~~~~iNiiDT 89 (624)
-+++|||||||+||+|||||||+|+|||.+|.+++......++||++++||||||||.|+++++ .|++++||||||
T Consensus 15 ~~pe~IRNI~IiaHvdaGKTTLtE~lL~~sg~i~~~~~~~~t~~D~~~~E~eRgITI~sa~~sl~~~~~~~~~~INlIDT 94 (730)
T PRK07560 15 RNPEQIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGKQLALDYDEEEQARGITIKAANVSMVHEYEGKEYLINLIDT 94 (730)
T ss_pred HCHHHCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCHHHHHHCCCCEEECCEEEEEEECCCCEEEEEECC
T ss_conf 18763528999937998989999999996499865347986417885999972985752110289875698378999819
Q ss_pred CCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHH------
Q ss_conf 98754079999998742178999976878864789999999972997899997543667402568999998886------
Q gi|254780233|r 90 PGHADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLFS------ 163 (624)
Q Consensus 90 PGH~DF~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~------ 163 (624)
|||+||++||+|+|+++||||+||||++||++||+.+|++|.+.++|+|+|||||||..+++....++++.-|.
T Consensus 95 PGh~DF~~Ev~~aLrv~DgAvvVvdav~GV~~qTe~v~rqa~~~~~p~ilfINKmDR~~~~l~~~~~~~~~~l~~~i~~~ 174 (730)
T PRK07560 95 PGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALEERVRPVLFINKVDRLIKELKLTPQEMQQRLLKIIKDV 174 (730)
T ss_pred CCCCHHHHHHHHHHHHHCEEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 69730599999999885878999978988773189999999877999799986866235553779899988898899999
Q ss_pred ----HCCCCHH-----HC---CHHHHHHHHHCCEECCCCCCC-----------------------CCCCCHHHHHHHHCC
Q ss_conf ----2267301-----10---426688788659164674223-----------------------348641355532102
Q gi|254780233|r 164 ----ALDATDA-----QL---DFPILYGSGRFGWMSDSSDGS-----------------------RDQGMVPLLNLIVDH 208 (624)
Q Consensus 164 ----~l~a~de-----~l---d~Pv~~~Sa~~G~~~~~~~~~-----------------------~~~gl~~Lld~Ii~~ 208 (624)
+.-..++ .. +--+.++|++.+|+....... +..-..+|||+|+++
T Consensus 175 ~~~i~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~~~~~~~~~~~~~ei~~~~~~~~~~~l~~~~pl~~~lld~i~~~ 254 (730)
T PRK07560 175 NKLIEGYAPEEFKEKWKVDVADGTVAFGSALYNWAISVPMMQKTGIKFKDIIDYYEKGKVKELAEKAPLHEVVLDMVIKH 254 (730)
T ss_pred HHHHHHCCCHHHCCCEEECCCCCCHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 99998637155375505244334205442342752346999871877789999985312888765384799999999986
Q ss_pred CCCCCC--------------------------CCCHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCEE
Q ss_conf 454223--------------------------320000011110136777349999960780515988999605785012
Q gi|254780233|r 209 VPPPVI--------------------------SEGEFKMIGTILEKDPFLGRIVTGRIHSGTIKSNQNIKALSPDGALVE 262 (624)
Q Consensus 209 iP~P~~--------------------------~e~pl~~~V~~i~~d~y~Gria~gRV~sGtlk~Gd~V~vl~~~g~~~~ 262 (624)
+|+|.+ +++||.++|||+.+|||.|+++|+||+||+|+.|+.|++.+.+ .
T Consensus 255 lPsP~ea~~~ri~~~~~g~~~~~~~~~~~~~d~~~pl~~~vfK~~~dp~~g~is~~RV~sG~L~~g~~v~n~~~~----~ 330 (730)
T PRK07560 255 LPNPLEAQKYRIPKIWKGDLNSEIGKAMLNCDPNGPLVMMVTKIIVDPHAGEVATGRVFSGTIRRGQEVYLVGAK----K 330 (730)
T ss_pred CCCHHHHCCCCCCCCCCCCCCCHHHEEEEECCCCCCCEEEEEEEEECCCCCEEEEEEEECCEECCCCEEEECCCC----C
T ss_conf 899577221035644578876510101220489987145775455669886489999843466479875404777----4
Q ss_pred ECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCC-CCCCCC-CCCCCEEEEEECCCCCCCCCCCCC
Q ss_conf 114553011036653444112545543222233210122110556521-123366-665421578612686554444321
Q gi|254780233|r 263 VGRVSKILAFRGIDRQPIDEAHAGDIVSIAGLVKATVADTFCDPSIDE-PLKAQP-IDPPTVTMTFGVNDSPLAGTEGDK 340 (624)
Q Consensus 263 ~~kV~~L~~~~G~~r~~v~ea~AGDIvaIaGl~~~~iGDTL~~~~~p~-~Lp~i~-i~~Ptis~~f~vn~sP~ag~eg~~ 340 (624)
.+||++||.+.|.++.++++|.|||||+++||+++.+|||||+++.+. |+.++. +++|++++++.+.+ ..| .
T Consensus 331 ~eki~~l~~~~g~~~~~v~~~~aGdI~ai~gL~~~~tGdTl~~~~~~~~~~~~~~~~~~Pv~~~aIeP~~----~~D--~ 404 (730)
T PRK07560 331 KARVQQVGIYMGPEREEVDEIPAGNIAAVTGLKDARAGETVVSPEYKMTPFESLKHISEPVVTVAIEAKN----PKD--L 404 (730)
T ss_pred CEEEEEEEEEECCCEEEEEEECCCCEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEEECCC----HHH--H
T ss_conf 1252157872069657810516787899956655411665425876776522245589965999960288----667--9
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEECCHHHHHHHHHHHHHC-CEEEECCCCEEEEEEEC-----------
Q ss_conf 017889999999730283799998599975999963645688887412334-80330157448998208-----------
Q gi|254780233|r 341 VTSRMIRDRLFKEAEGNIALKIEESSSKDAFFVSGRGELQLAVLIETMRRE-GFELAVSRPRVVIKKEG----------- 408 (624)
Q Consensus 341 ~ts~~l~~rL~ke~~~dvsL~ve~~~~~~~~~v~GrGeLHL~IliE~mRRE-G~E~~vs~P~V~~k~~d----------- 408 (624)
.+|.++|.+++++||+|+|+.++++++++++|+|||||+|++++|+|+ |.|+.+++|+|.|||.-
T Consensus 405 ---~kL~~aL~~L~~eDPsl~v~~d~etge~vl~gmGElHLei~~~rL~~~f~vev~~~~p~V~YrETI~~~~~~~~~ks 481 (730)
T PRK07560 405 ---PKLIEVLRQLAKEDPTLQVKINEETGEHLLSGMGELHLEVITYRIKRDYGVEVVTSEPIVVYRETVRGKSQVVEGKS 481 (730)
T ss_pred ---HHHHHHHHHHHHHCCEEEEEECCCCCEEEEEECCHHHHHHHHHHHHHHHCCCEEECCCEEEEEEEECCCCCCEECCC
T ss_conf ---99999999988419748999837788099996289999999999999848523654976778864156655100116
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q gi|254780233|r 409 -------------------------------------------------------------------------------- 408 (624)
Q Consensus 409 -------------------------------------------------------------------------------- 408 (624)
T Consensus 482 ~~~h~~~~i~~epl~~~~~~~~~~g~v~~~~~p~~~~~~l~~~g~~~~~~~~v~~~~~~ni~~d~~~g~~~~~~~~~~v~ 561 (730)
T PRK07560 482 PNKHNRFYITVEPLDEEVIEAIKEGEISEDMDPKERAKILREAGMDKDEAKGVWAIYNGNVFIDMTKGIQYLRETMELII 561 (730)
T ss_pred CCCCCEEEEEEEECCHHHHCCCCCCEEECCCCHHHHHHHHHHCCCCHHHHCCEEEECCCCEEEECCCCCCCHHHHHHHHH
T ss_conf 88764699999747644310330555511348266655666517764442050231267455564767555798999999
Q ss_pred -C--------------------------------------------------------EECCEEEEEEEECCHHHHHHHH
Q ss_conf -8--------------------------------------------------------2604168888731323310789
Q gi|254780233|r 409 -D--------------------------------------------------------SLLEPIEEVVIDVDEEHSGAVV 431 (624)
Q Consensus 409 -g--------------------------------------------------------~~lEPie~v~I~vp~ey~G~Vi 431 (624)
| .+||||++++|.||++|+|+||
T Consensus 562 ~G~~~a~~~GpL~g~Pv~~v~v~l~dg~~h~d~v~~~~~~~~~A~~~a~~~a~~~a~p~LLEPi~~~eI~~P~~~~G~V~ 641 (730)
T PRK07560 562 EGFREAMKEGPLAKEPVRGVKVRLHDAKLHEDAIHRGPAQVIPAVRNAIFAAMLSAKPTLLEPIQKVDINVPQDYMGAVT 641 (730)
T ss_pred HHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEEEECHHHHHHHH
T ss_conf 99999995598667655667999997421156344563789999999999999877988985668999998889987999
Q ss_pred HHHHHCCCEECCCCCCCCCEEEEEEEECHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCC
Q ss_conf 988743540104213689849999996133565688998853276167888870530135787
Q gi|254780233|r 432 QKMTLHKSEMIELRPSGTGRVRLVFLSPTRGLIGYQSQLMTDTRGTAIMNRLFHSYQPHKGEI 494 (624)
Q Consensus 432 ~~l~~RrG~i~~m~~~~~g~~~l~~~vP~r~l~g~~~~l~s~T~G~g~~~~~f~~Y~p~~g~i 494 (624)
++|++|||++++|++.++ ...|.+.+|.++++||.++|||+|+|+|.|++.|+||+|++.++
T Consensus 642 ~dL~~RRG~I~~~~~~~~-~~~I~A~vPlae~~gy~~~LRs~T~G~g~~~~~F~~y~~vp~~~ 703 (730)
T PRK07560 642 SEIQGRRGKILDMTQEGD-MAIIEAEAPVAEMFGFAGEIRSATEGRAFWSTEFAGFEPVPDSL 703 (730)
T ss_pred HHHHHCCCEEECEECCCC-CEEEEEEECHHHHCCHHHHHHHHCCCCCEEEEEECCCCCCCHHH
T ss_conf 999867958835223699-19999997789862828999966889716999958862699889
No 13
>TIGR00484 EF-G translation elongation factor G; InterPro: IPR004540 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome , , . EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF-G is a large, five-domain GTPase that promotes the directional movement of mRNA and tRNAs on the ribosome in a GTP-dependent manner. Unlike other GTPases, but by analogy to the myosin motor, EF-G performs its function of powering translocation in the GDP-bound form; that is, in a kinetically stable ribosome-EF-G(GDP) complex formed by GTP hydrolysis on the ribosome. The complex undergoes an extensive structural rearrangement, in particular affecting the small ribosomal subunit, which leads to mRNA-tRNA movement. Domain 4, which extends from the 'body' of the EF-G molecule much like a lever arm, appears to be essential for the structural transition to take place. In a hypothetical model, GTP hydrolysis induces a conformational change in the G domain of EF-G, which affects the interactions with neighbouring domains within EF-G. The resulting rearrangement of the domains relative to each other generates conformational strain in the ribosome to which EF-G is fixed. Because of structural features of the tRNA-ribosome complex, this conformational strain results in directional tRNA-mRNA movement. The functional parallels between EF-G and motor proteins suggest that EF-G differs from classical G-proteins in that it functions as a force-generating mechanochemical device rather than a conformational switch . Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. Escherichia coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis sp. (strain PCC 6803) has a few proteins more closely related to EF-G than to any other characterised protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. More information about these proteins can be found at Protein of the Month: Elongation Factors . ; GO: 0003746 translation elongation factor activity, 0005525 GTP binding, 0006414 translational elongation, 0005622 intracellular.
Probab=100.00 E-value=0 Score=849.42 Aligned_cols=457 Identities=30% Similarity=0.483 Sum_probs=411.5
Q ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCC--C--EECCCCHHHHHCCCEEEEEEEEEEECC------E
Q ss_conf 46802431499985468987788999999839614232200--0--003885779870960646799999899------7
Q gi|254780233|r 13 RLGYMQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVS--E--RVMDCNDLEKERGITILAKVTSIVWND------V 82 (624)
Q Consensus 13 ~~~~~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~--~--~vmD~~~~EreRGITI~a~~~~~~~~~------~ 82 (624)
.+...++|||+|.||+|+||||++|++||+||.+++.++++ | ..||++++||||||||.|+.|++.|++ +
T Consensus 4 ~~~~~~~RNiGI~AHIDaGKTT~~ERILFy~g~~HkIgE~~g~dG~a~MDwME~E~ERGITItSAAT~~~Wk~~~~~~~~ 83 (705)
T TIGR00484 4 TTDLEKLRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHGKDGAATMDWMEQEKERGITITSAATTVEWKGMAKQYDH 83 (705)
T ss_pred CCCHHHCCCCCEEEEECCCCCCCHHEEEECCCCCCCEEECCCCCCCEECCHHHHCCCCCEEEECHHCCHHHHHHHHCCCC
T ss_conf 56523305543278633887320101000137501000001678851123123003587142100110102101000140
Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 99997289875407999999874217899997687886478999999997299789999754366740256899999888
Q gi|254780233|r 83 RINIVDTPGHADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLF 162 (624)
Q Consensus 83 ~iNiiDTPGH~DF~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf 162 (624)
.|||||||||+||+-||||+||+.||||+|.||..||+|||.+|||+|..+++|+|+|||||||-+|+|..+.++++.-+
T Consensus 84 ~~N~IDTPGHVDFT~EVERSlRVLDGAv~V~~a~~GV~pQ~~TVwRQa~~Y~VPRi~FVNK~Dk~GAnf~~~~~~~~~rL 163 (705)
T TIGR00484 84 RINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANKYEVPRIVFVNKMDKTGANFLRVVNQLKSRL 163 (705)
T ss_pred EEEEEECCCCEEEEEEEEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 37887378941257885201225645665333026866411567765432688628997155645787889999999874
Q ss_pred H-------------------------------------------------------------HC-CCCHHHCC-------
Q ss_conf 6-------------------------------------------------------------22-67301104-------
Q gi|254780233|r 163 S-------------------------------------------------------------AL-DATDAQLD------- 173 (624)
Q Consensus 163 ~-------------------------------------------------------------~l-~a~de~ld------- 173 (624)
. .+ ..+|++++
T Consensus 164 ~~~~~~~qlpiGaE~~f~GviDLv~~ka~~~~~~~~g~~~~~~~iP~~~~~~~~~~~~~l~e~~a~~~~~LM~~yl~G~e 243 (705)
T TIGR00484 164 GANAVPIQLPIGAEDKFIGVIDLVEMKAYFFEEGDKGTKIDEKEIPSDLLEQAKELRENLVEAVAELDEELMEKYLEGEE 243 (705)
T ss_pred CCCCEEEEECCCCCCCCCEEEEEEEEEEEEECCCCCCCEEHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCC
T ss_conf 67734664112566563104554301567750677664001222647899999999999999884200788998508965
Q ss_pred -------------------HHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCCCCC--------------------
Q ss_conf -------------------26688788659164674223348641355532102454223--------------------
Q gi|254780233|r 174 -------------------FPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPPVI-------------------- 214 (624)
Q Consensus 174 -------------------~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~P~~-------------------- 214 (624)
+|++++||. +++|+..|||++++|+|+|.+
T Consensus 244 ~~~~~ik~~~r~g~l~~~~~pv~~GSaf-----------KNKGv~~lLDAV~~yLP~P~dv~~~~~~~~~~~~~e~~~~~ 312 (705)
T TIGR00484 244 LTIEEIKNAIRKGVLNLELIPVLCGSAF-----------KNKGVQLLLDAVVDYLPSPTDVPAIKGIDPDTNEEEIELKA 312 (705)
T ss_pred CCHHHHHHHHHCCEEEEEEEEEEECCCC-----------HHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCEEEEE
T ss_conf 3689998887513112468888750330-----------00258889999997478974315430235566776136751
Q ss_pred -CCCHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf -3200000111101367773499999607805159889996057850121145530110366534441125455432222
Q gi|254780233|r 215 -SEGEFKMIGTILEKDPFLGRIVTGRIHSGTIKSNQNIKALSPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSIAG 293 (624)
Q Consensus 215 -~e~pl~~~V~~i~~d~y~Gria~gRV~sGtlk~Gd~V~vl~~~g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIvaIaG 293 (624)
++.||.++.||+..|||+|+++|.|||+|.|+.|+.|.+.. ..+..||++|..++..++.++++..||||+|+.|
T Consensus 313 sd~~~f~~LAFK~~tdpfvG~LTf~RvY~G~l~~G~~v~Ns~----~~k~ervgRl~~MHa~~re~I~~~~aGdI~A~~G 388 (705)
T TIGR00484 313 SDEEPFVALAFKVATDPFVGQLTFVRVYSGVLKSGSYVKNSR----KSKKERVGRLVKMHANKREEIKEVRAGDIAAAIG 388 (705)
T ss_pred CCCCCCEEEEEEECCCCCCCEEEEEEEEEEEECCCCEEEECH----HHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEC
T ss_conf 567651223456405873112789999761512797776020----0001443233310037721001213563688731
Q ss_pred CCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEE
Q ss_conf 33210122110556521123366665421578612686554444321017889999999730283799998599975999
Q gi|254780233|r 294 LVKATVADTFCDPSIDEPLKAQPIDPPTVTMTFGVNDSPLAGTEGDKVTSRMIRDRLFKEAEGNIALKIEESSSKDAFFV 373 (624)
Q Consensus 294 l~~~~iGDTL~~~~~p~~Lp~i~i~~Ptis~~f~vn~sP~ag~eg~~~ts~~l~~rL~ke~~~dvsL~ve~~~~~~~~~v 373 (624)
|+++.+|||||+......|..+.+|+|++++++.|.+ ..+. .+..-+|-|++++|||+++..+++++++++
T Consensus 389 lkd~~TGdTl~d~~~~~~le~M~fp~PVI~~avePK~----Kad~-----~kM~~AL~~la~EDP~F~~~~~~E~g~TiI 459 (705)
T TIGR00484 389 LKDTTTGDTLCDEKADVILESMEFPEPVISLAVEPKT----KADQ-----EKMGIALGKLAEEDPTFRTFTDEETGQTII 459 (705)
T ss_pred CEECCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCC----CCCH-----HHHHHHHHHHHCCCCCEEEEECCCCCCHHH
T ss_conf 3002567632256420001002588871688755887----4355-----679999875322488604775274444132
Q ss_pred EECCHHHHHHHHHHHHHC-CEEEECCCCEEEEEEE---------------------------------------------
Q ss_conf 963645688887412334-8033015744899820---------------------------------------------
Q gi|254780233|r 374 SGRGELQLAVLIETMRRE-GFELAVSRPRVVIKKE--------------------------------------------- 407 (624)
Q Consensus 374 ~GrGeLHL~IliE~mRRE-G~E~~vs~P~V~~k~~--------------------------------------------- 407 (624)
+|||||||+|+++||+|| -.|..|+.|||.|||+
T Consensus 460 ~GMGELHL~i~vdRmkREFkvE~~~G~PQVayRET~~~~~~~~e~k~~kQSGGrGQyG~V~i~~~P~~~~~~~~gyEF~n 539 (705)
T TIGR00484 460 AGMGELHLDIIVDRMKREFKVEANVGAPQVAYRETIRSKAEDVEGKYAKQSGGRGQYGHVVIELEPLEPEEGGKGYEFVN 539 (705)
T ss_pred HCCCHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCEEEECCCCCCCCEEEEEEEECCCCCCCCCCCEEEE
T ss_conf 03104567788665210033433058683034554311123213503230689873016899861277788876422533
Q ss_pred ----------------------------------------------------------------------CCEECCEEEE
Q ss_conf ----------------------------------------------------------------------8826041688
Q gi|254780233|r 408 ----------------------------------------------------------------------GDSLLEPIEE 417 (624)
Q Consensus 408 ----------------------------------------------------------------------dg~~lEPie~ 417 (624)
+.++|||||+
T Consensus 540 ~I~GGviP~EYIp~v~~G~~~a~~~G~LaGyP~vD~k~~l~dG~yH~VDSse~AFk~Aas~A~k~a~~~a~PvlLEPiMk 619 (705)
T TIGR00484 540 EIKGGVIPREYIPAVDKGLQEALESGPLAGYPVVDIKVTLFDGSYHDVDSSELAFKLAASLAFKEAVKKANPVLLEPIMK 619 (705)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCEECCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEECCCEE
T ss_conf 03486077321036777799998469732143476478885175231162789999999999998676359745446027
Q ss_pred EEEECCHHHHHHHHHHHHHCCCEECCCCCCCCCEEEEEEEECHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCC
Q ss_conf 88731323310789988743540104213689849999996133565688998853276167888870530135787
Q gi|254780233|r 418 VVIDVDEEHSGAVVQKMTLHKSEMIELRPSGTGRVRLVFLSPTRGLIGYQSQLMTDTRGTAIMNRLFHSYQPHKGEI 494 (624)
Q Consensus 418 v~I~vp~ey~G~Vi~~l~~RrG~i~~m~~~~~g~~~l~~~vP~r~l~g~~~~l~s~T~G~g~~~~~f~~Y~p~~g~i 494 (624)
++|.+|+||+|++|++|++|||.+.+++.... ...+.+.||..||+||++.|||.|||+|.|+|+|++|...|-.+
T Consensus 620 vev~~P~ey~Gd~~Gdl~~RRg~~~g~~~~~~-~~~v~A~VPL~EMFGyaT~LRS~tqGr~~y~M~~~~Y~e~P~~v 695 (705)
T TIGR00484 620 VEVEVPEEYMGDVIGDLSRRRGIIEGSEERGN-VQVVKAEVPLSEMFGYATDLRSSTQGRGEYSMEFLHYGEVPSSV 695 (705)
T ss_pred EEEECCCCCCCCHHCCCCCCCCEEEEEECCCC-EEEEEEEECCHHHCCHHHHHHCCCCCCEEEEEEHHHHCCCHHHH
T ss_conf 88755852015100010003511420002373-56899850603222303233205677226886323321232789
No 14
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=0 Score=802.49 Aligned_cols=545 Identities=29% Similarity=0.402 Sum_probs=467.5
Q ss_pred CCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECC-----EEEEE
Q ss_conf 3468024314999854689877889999998396142322000003885779870960646799999899-----79999
Q gi|254780233|r 12 GRLGYMQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWND-----VRINI 86 (624)
Q Consensus 12 ~~~~~~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~-----~~iNi 86 (624)
..+.+.+|||++||||+|||||||+|+||..||++..+. ..++++|++++||||||||+|+.+.+.|+. |.+|+
T Consensus 2 ~~~~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Re-m~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnl 80 (603)
T COG0481 2 TFTPQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSERE-MRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNL 80 (603)
T ss_pred CCCCHHHCCCEEEEEEECCCCCHHHHHHHHHHCCCCHHH-HHHHHHHHHHHHHHCCCEEEEEEEEEEEEECCCCEEEEEE
T ss_conf 867254423227999842782048899999846767678-8887522134676628458732789999947997799997
Q ss_pred ECCCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 72898754079999998742178999976878864789999999972997899997543667402568999998886226
Q gi|254780233|r 87 VDTPGHADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLFSALD 166 (624)
Q Consensus 87 iDTPGH~DF~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~ 166 (624)
||||||+||++||.|+|.+|+||||||||++|+++||-.....|++.+|.+|.||||+|.|.|++++|..|+.|.+ .++
T Consensus 81 IDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~Adpervk~eIe~~i-Gid 159 (603)
T COG0481 81 IDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAADPERVKQEIEDII-GID 159 (603)
T ss_pred CCCCCCCCEEEEEHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHH-CCC
T ss_conf 2799844367776133763777189998765537889999999987696799753225688789789999999870-989
Q ss_pred CCHHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCCCCCC-CCHHHCCCCCCCCCCCCCEEEEEEECCCCC
Q ss_conf 7301104266887886591646742233486413555321024542233-200000111101367773499999607805
Q gi|254780233|r 167 ATDAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPPVIS-EGEFKMIGTILEKDPFLGRIVTGRIHSGTI 245 (624)
Q Consensus 167 a~de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~P~~~-e~pl~~~V~~i~~d~y~Gria~gRV~sGtl 245 (624)
++| .+-+|||+| .|++.+|++|++.+|+|..+ ++||++++|+.+||+|+|.+++.||+.|++
T Consensus 160 ~~d------av~~SAKtG-----------~gI~~iLe~Iv~~iP~P~g~~~~pLkALifDS~yD~Y~GVv~~vRi~dG~i 222 (603)
T COG0481 160 ASD------AVLVSAKTG-----------IGIEDVLEAIVEKIPPPKGDPDAPLKALIFDSWYDNYLGVVVLVRIFDGTL 222 (603)
T ss_pred CCC------CEEEECCCC-----------CCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEEEEECEE
T ss_conf 520------046763468-----------997999999996289898999875158888412345542899999862434
Q ss_pred CCCCEEEEECCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCC----CCCCCCCCCCCEECCCCCC--CCCCCCCCCC
Q ss_conf 159889996057850121145530110366534441125455432----2223321012211055652--1123366665
Q gi|254780233|r 246 KSNQNIKALSPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVS----IAGLVKATVADTFCDPSID--EPLKAQPIDP 319 (624)
Q Consensus 246 k~Gd~V~vl~~~g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIva----IaGl~~~~iGDTL~~~~~p--~~Lp~i~i~~ 319 (624)
++||++..+.. |+.. .|.++-.|.- +..++++..||+++- |..+.++.|||||+...+| +|||+++-..
T Consensus 223 k~gdki~~m~t-g~~y---~V~evGvftP-~~~~~~~L~aGeVG~~~a~iK~v~d~~VGDTiT~~~~p~~e~LpGfk~~~ 297 (603)
T COG0481 223 KKGDKIRMMST-GKEY---EVDEVGIFTP-KMVKVDELKAGEVGYIIAGIKDVRDARVGDTITLASNPATEPLPGFKEVK 297 (603)
T ss_pred CCCCEEEEEEC-CCEE---EEEEEEECCC-CCCCCCCCCCCCEEEEEEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCC
T ss_conf 47998999746-9768---8888751167-63324644577344899851111568655567506787766688877678
Q ss_pred CCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCC---CEEEEEECCHHHHHHHHHHHHHC-CEEE
Q ss_conf 4215786126865544443210178899999997302837999985999---75999963645688887412334-8033
Q gi|254780233|r 320 PTVTMTFGVNDSPLAGTEGDKVTSRMIRDRLFKEAEGNIALKIEESSSK---DAFFVSGRGELQLAVLIETMRRE-GFEL 395 (624)
Q Consensus 320 Ptis~~f~vn~sP~ag~eg~~~ts~~l~~rL~ke~~~dvsL~ve~~~~~---~~~~v~GrGeLHL~IliE~mRRE-G~E~ 395 (624)
|++..-+.+ .+++.. ..|+++|.|+.++|.||.+|+..+. -+|+|+++|.|||+|+.||+.|| +.++
T Consensus 298 P~Vf~GlyP-------id~~dy--e~LrdAleKL~LNDasl~~E~EtS~ALGfGfRcGFLGlLHmeiiqERLeREf~ldl 368 (603)
T COG0481 298 PMVFAGLYP-------VDSDDY--EDLRDALEKLQLNDASLTYEPETSQALGFGFRCGFLGLLHMEIIQERLEREFDLDL 368 (603)
T ss_pred CEEEEEECC-------CCHHHH--HHHHHHHHHCCCCCCEEEECCCCCHHCCCCEEEHHHHHHHHHHHHHHHHHHHCCCE
T ss_conf 559984111-------666678--99999997443353015632252133057563010227899999999987608634
Q ss_pred ECCCCEEEEEE--ECC------------------EECCEEEEEEEECCHHHHHHHHHHHHHCCCEECCCCCCCCCEEEEE
Q ss_conf 01574489982--088------------------2604168888731323310789988743540104213689849999
Q gi|254780233|r 396 AVSRPRVVIKK--EGD------------------SLLEPIEEVVIDVDEEHSGAVVQKMTLHKSEMIELRPSGTGRVRLV 455 (624)
Q Consensus 396 ~vs~P~V~~k~--~dg------------------~~lEPie~v~I~vp~ey~G~Vi~~l~~RrG~i~~m~~~~~g~~~l~ 455 (624)
..+.|.|+|+. .|| .+.|||.+++|.+|+||+|+||++|..+||.+.+|++.+..|+.|.
T Consensus 369 I~TaPsV~Y~v~~~~g~~~~i~NPs~~P~~~~I~~i~EP~v~~~ii~P~eylG~vm~Lcq~kRG~~~~m~yl~~~rv~l~ 448 (603)
T COG0481 369 ITTAPSVVYKVELTDGEEIEVDNPSDLPDPNKIEEIEEPYVKATIITPQEYLGNVMELCQEKRGIQIDMEYLDQNRVMLT 448 (603)
T ss_pred EECCCCEEEEEEECCCCEEEECCHHHCCCHHHHHEEECCEEEEEEECCHHHHHHHHHHHHHHCCCEECCEEECCCEEEEE
T ss_conf 84389468999973896899528576888313210517656999957078878999999872276463367037649999
Q ss_pred EEECHHHHH-HHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCEEEEECCCCCEEEEHHHHHHHHCCEEECCCCEEEC
Q ss_conf 996133565-6889988532761678888705301357878777425888289858300333123211226279985437
Q gi|254780233|r 456 FLSPTRGLI-GYQSQLMTDTRGTAIMNRLFHSYQPHKGEIGGRSNGVLLSNEEGKVVAYALFNLEDRGSMIVEPGDKVYQ 534 (624)
Q Consensus 456 ~~vP~r~l~-g~~~~l~s~T~G~g~~~~~f~~Y~p~~g~i~~r~~G~lis~~~G~~~~yal~~lq~rG~~fv~pg~~vy~ 534 (624)
|++|..+++ +|++.|+|.|+|||+|+++|.+|++-. -.+-..|+ +|+.+. ||. ||.|.+..|+
T Consensus 449 Y~lPl~Eiv~DFfDkLKS~skGYAS~DYe~~~y~~~~----lVK~dIlv---Nge~VD-ALs--------~ivHrd~A~~ 512 (603)
T COG0481 449 YELPLAEIVFDFFDKLKSISKGYASFDYEFIGYRESD----LVKVDILV---NGEKVD-ALS--------FIVHRDNAYE 512 (603)
T ss_pred EECCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCC----EEEEEEEE---CCCCCC-CEE--------EEECHHHHHH
T ss_conf 9464788888876764222465064311002464056----58999995---586334-122--------3410566899
Q ss_pred -CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEHHHHHHHHHCCEEEEECCCCE-EEEEECCCHHHHH
Q ss_conf -82867646754310344166501221368873268855992333999988864583999988771-6763015965768
Q gi|254780233|r 535 -GMIVGIHTRENDLDVNVLKGKKLTNMRASGKDEAVKLVPAVKMTLEQALSWIQNDELVEVTPKSI-RLRKMYLDPNERK 612 (624)
Q Consensus 535 -Gmivge~~r~~dl~vN~~k~k~ltn~r~~~~d~~~~l~~~~~~~le~~~~~i~~DelvevtP~~i-R~RK~~l~~~~r~ 612 (624)
|.-+ +-|-|.| +..+..+..||.+..-+....+.|..++.|.|..|+..+| |.||.+.+|++.|
T Consensus 513 rgr~~------------~~KlKel--IPrq~FeipIQAaIg~kiIARetIkalRKdVlAKCYGGDisRKrKLLeKQKeGK 578 (603)
T COG0481 513 RGREL------------VEKLKEL--IPRQQFEIPIQAAIGSKIIARETIKALRKDVLAKCYGGDISRKRKLLEKQKEGK 578 (603)
T ss_pred HHHHH------------HHHHHHH--CCHHHEEEEEEHHHCCEEEEHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 89999------------9999865--647441040022337847874445776414112001775117889998766666
Q ss_pred HHHHHHH
Q ss_conf 8887666
Q gi|254780233|r 613 RKGKSVN 619 (624)
Q Consensus 613 ~~~k~~~ 619 (624)
|++|+..
T Consensus 579 KRMK~iG 585 (603)
T COG0481 579 KRMKQIG 585 (603)
T ss_pred HHHHHCC
T ss_conf 8887247
No 15
>KOG0465 consensus
Probab=100.00 E-value=0 Score=773.83 Aligned_cols=458 Identities=28% Similarity=0.477 Sum_probs=406.1
Q ss_pred CCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCC--EECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECC
Q ss_conf 3468024314999854689877889999998396142322000--00388577987096064679999989979999728
Q gi|254780233|r 12 GRLGYMQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSE--RVMDCNDLEKERGITILAKVTSIVWNDVRINIVDT 89 (624)
Q Consensus 12 ~~~~~~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~--~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDT 89 (624)
+.....+||||.|+||+|+|||||+|++||++|.+...+.|.. .+||++++||+|||||.|..+++.|++++||||||
T Consensus 32 ~~~~~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDT 111 (721)
T KOG0465 32 ARIPLNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDT 111 (721)
T ss_pred CCCCHHHHCCCCEEEEEECCCCEEEHEEEEECCEEEECCCCCCCCEEEEHHHHHHHCCCEEEECEEEEEECCCEEEEECC
T ss_conf 55745451003169998269851102001302201002320267604642777865384464121566404520678548
Q ss_pred CCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHH-------
Q ss_conf 9875407999999874217899997687886478999999997299789999754366740256899999888-------
Q gi|254780233|r 90 PGHADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLF------- 162 (624)
Q Consensus 90 PGH~DF~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf------- 162 (624)
|||+||.-||||+|++.|||++|+||+.||++||..||+++.++++|.|.|||||||-+|+|-.+++++...+
T Consensus 112 PGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmGa~~~~~l~~i~~kl~~~~a~v 191 (721)
T KOG0465 112 PGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMGASPFRTLNQIRTKLNHKPAVV 191 (721)
T ss_pred CCCEEEEEEEHHHHHHCCCEEEEEECCCCEEHHHHHHHHHHHHCCCCEEEEEEHHHHCCCCHHHHHHHHHHHCCCCHHEE
T ss_conf 97215797720025205672899970365111356898888761897599986166447974889999986227860226
Q ss_pred -----------------------------------------------------HHCCCCHHHC-----------------
Q ss_conf -----------------------------------------------------6226730110-----------------
Q gi|254780233|r 163 -----------------------------------------------------SALDATDAQL----------------- 172 (624)
Q Consensus 163 -----------------------------------------------------~~l~a~de~l----------------- 172 (624)
..+.--||+|
T Consensus 192 qiPig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~e~fLee~~ps~~~l~~ 271 (721)
T KOG0465 192 QIPIGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADVDETLAEMFLEEEEPSAQQLKA 271 (721)
T ss_pred ECCCCCCCCCHHHHHHHHCEEEEECCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 76414454431477463225899718987546855698789999999999999998611689999985258999899999
Q ss_pred ----------CHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCCCCC---------------------CC-CHHH
Q ss_conf ----------426688788659164674223348641355532102454223---------------------32-0000
Q gi|254780233|r 173 ----------DFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPPVI---------------------SE-GEFK 220 (624)
Q Consensus 173 ----------d~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~P~~---------------------~e-~pl~ 220 (624)
-.||+++||+. +.|++||||+|++|+|+|.. .+ .||.
T Consensus 272 aIRr~Ti~r~fvPVl~GSAlK-----------NkGVQPlLDAVvdYLPsP~Ev~n~a~~ke~~~~ekv~l~~~~d~~Pfv 340 (721)
T KOG0465 272 AIRRATIKRSFVPVLCGSALK-----------NKGVQPLLDAVVDYLPSPSEVENYALNKETNSKEKVTLSPSRDKDPFV 340 (721)
T ss_pred HHHHHHHHCCEEEEEECHHHC-----------CCCCCHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCEEECCCCCCCCEE
T ss_conf 999887515524677532223-----------567415899998767993662451025678886646752278899603
Q ss_pred CCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 01111013677734999996078051598899960578501211455301103665344411254554322223321012
Q gi|254780233|r 221 MIGTILEKDPFLGRIVTGRIHSGTIKSNQNIKALSPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSIAGLVKATVA 300 (624)
Q Consensus 221 ~~V~~i~~d~y~Gria~gRV~sGtlk~Gd~V~vl~~~g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIvaIaGl~~~~iG 300 (624)
+++||+..++| |++.|.|||+|+|++|+.+++.+ ..+..|+.+|+.++....++|+++.||||||+.|+ ++..|
T Consensus 341 ~LAFKle~g~f-GqLTyvRvYqG~L~kG~~iyN~r----tgKKvrv~RL~rmHa~~medV~~v~AG~I~alfGi-dcasG 414 (721)
T KOG0465 341 ALAFKLEEGRF-GQLTYVRVYQGTLSKGDTIYNVR----TGKKVRVGRLVRMHANDMEDVNEVLAGDICALFGI-DCASG 414 (721)
T ss_pred EEEEEEEECCC-CCEEEEEEEEEEECCCCEEEECC----CCCEEEHHHHHHHCCCCCCCCCEEECCCEEEEECC-CCCCC
T ss_conf 35777641674-52699998621664786787347----78544667787750254452000102766888523-33568
Q ss_pred CEECCC-CCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEECCHH
Q ss_conf 211055-6521123366665421578612686554444321017889999999730283799998599975999963645
Q gi|254780233|r 301 DTFCDP-SIDEPLKAQPIDPPTVTMTFGVNDSPLAGTEGDKVTSRMIRDRLFKEAEGNIALKIEESSSKDAFFVSGRGEL 379 (624)
Q Consensus 301 DTL~~~-~~p~~Lp~i~i~~Ptis~~f~vn~sP~ag~eg~~~ts~~l~~rL~ke~~~dvsL~ve~~~~~~~~~v~GrGeL 379 (624)
||+++. +....+..+.+|+|++|+++.+++ .++. .+..++|.+...+|||+++..+++.++++++|||||
T Consensus 415 DTftd~~~~~~~m~si~vPePVis~aikP~s----k~d~-----~~fskaL~rf~~EDPtFrv~~D~E~kqTvIsGMGEL 485 (721)
T KOG0465 415 DTFTDKQNLALSMESIHIPEPVISVAIKPVN----KKDA-----DNFSKALNRFTKEDPTFRVSLDPEMKQTVISGMGEL 485 (721)
T ss_pred CEECCCCCCCCEEEEEECCCCEEEEEECCCC----CCCH-----HHHHHHHHHHCCCCCCEEEEECCCCCCEEHHCCCHH
T ss_conf 7122676566125676669872788732367----4417-----899999976422499558886565564201043035
Q ss_pred HHHHHHHHHHHC-CEEEECCCCEEEEEEE---------------------------------------------------
Q ss_conf 688887412334-8033015744899820---------------------------------------------------
Q gi|254780233|r 380 QLAVLIETMRRE-GFELAVSRPRVVIKKE--------------------------------------------------- 407 (624)
Q Consensus 380 HL~IliE~mRRE-G~E~~vs~P~V~~k~~--------------------------------------------------- 407 (624)
||+|..|||+|| |.+..+++|+|.|||.
T Consensus 486 HLEIy~eRl~rEy~~~~~~Gkp~VayRETi~~~~~f~~~hKkqSgG~gqy~kv~g~~epl~~~~~~~~eF~~~~~g~~~P 565 (721)
T KOG0465 486 HLEIYVERLVREYKVDAELGKPQVAYRETITSPVEFDYTHKKQSGGAGQYGKVEGVIEPLPPGSNEKFEFSDEIVGGNVP 565 (721)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEEHHHCCCCCCCEEEECCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCC
T ss_conf 68999999999858964028833652012177554314402466887654511468762489887238997136689885
Q ss_pred ---------------------------------CC-----------------------------EECCEEEEEEEECCHH
Q ss_conf ---------------------------------88-----------------------------2604168888731323
Q gi|254780233|r 408 ---------------------------------GD-----------------------------SLLEPIEEVVIDVDEE 425 (624)
Q Consensus 408 ---------------------------------dg-----------------------------~~lEPie~v~I~vp~e 425 (624)
|| .+|||||.|+|.+|+|
T Consensus 566 ~~f~pa~ekg~~e~~~~G~L~ghpl~~~r~~l~Dga~h~vds~elaf~~at~~a~r~a~~~a~p~iLEPIM~Vevt~P~E 645 (721)
T KOG0465 566 KQFIPAVEKGFEEIVAKGPLIGHPLSNLRIVLQDGAHHPVDSSELAFMKATRNAFREAFKRAPPRILEPIMNVEVTTPEE 645 (721)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCEEEEEECCHH
T ss_conf 55778898899999856975687024518998348867665007999999999999998748940210101357846545
Q ss_pred HHHHHHHHHHHCCCEECCCCCCCCCEEEEEEEECHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCC
Q ss_conf 31078998874354010421368984999999613356568899885327616788887053013578787
Q gi|254780233|r 426 HSGAVVQKMTLHKSEMIELRPSGTGRVRLVFLSPTRGLIGYQSQLMTDTRGTAIMNRLFHSYQPHKGEIGG 496 (624)
Q Consensus 426 y~G~Vi~~l~~RrG~i~~m~~~~~g~~~l~~~vP~r~l~g~~~~l~s~T~G~g~~~~~f~~Y~p~~g~i~~ 496 (624)
|+|.|+++|++|+|.|++.+..+. +-.+.+++|.++|+||.++|||+|+|.|.|+++|++|+|.+.+...
T Consensus 646 fqG~Vi~~L~kR~a~I~~~d~~~~-~~ti~A~VPL~~mfgYss~LRslTqGkgeftMeys~y~p~~~~vq~ 715 (721)
T KOG0465 646 FQGTVIGDLNKRKAQITGIDSSED-YKTIKAEVPLNEMFGYSSELRSLTQGKGEFTMEYSRYSPVPPDVQD 715 (721)
T ss_pred HHHHHHHHHHHCCCEEECCCCCCC-EEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHH
T ss_conf 523565445544637951247784-3999952667887433466455526864378741124789667898
No 16
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=100.00 E-value=0 Score=666.88 Aligned_cols=409 Identities=24% Similarity=0.400 Sum_probs=330.5
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCC------EECCCCHHHHHCCCEEEEEEEEEEECCEEEEEEC
Q ss_conf 8024314999854689877889999998396142322000------0038857798709606467999998997999972
Q gi|254780233|r 15 GYMQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSE------RVMDCNDLEKERGITILAKVTSIVWNDVRINIVD 88 (624)
Q Consensus 15 ~~~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~------~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiD 88 (624)
.-.+|||||||||+|||||||+|+|||.+|++++.|+|+. .++|++++||+|||||.|..++|+|++++|||||
T Consensus 6 ei~~~RniaIi~H~dAGKTTLtE~lL~~~GaI~~~G~V~~~~~~~~~~sD~~~~E~~RgiSI~ssv~~~e~~~~~iNliD 85 (526)
T PRK00741 6 EVAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLD 85 (526)
T ss_pred HHHCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCHHHHHCCCEEECCEEEEEECCEEEEEEE
T ss_conf 87611779999378989899999999746752448466314678864678858899759648615177867898999990
Q ss_pred CCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHH----
Q ss_conf 8987540799999987421789999768788647899999999729978999975436674025689999988862----
Q gi|254780233|r 89 TPGHADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLFSA---- 164 (624)
Q Consensus 89 TPGH~DF~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~---- 164 (624)
||||+||++||+|+|+++|+||+||||++||++||+.+|+.|.++++|+|+|||||||++++|.++++++.+.|..
T Consensus 86 TPGh~DF~~e~~raL~a~D~Av~Vida~~GVe~qTe~~w~~~~~~~iP~i~FINKmDR~~ad~~~~l~ei~~~lg~~~~p 165 (526)
T PRK00741 86 TPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGREPLELLDEIEEVLGIACAP 165 (526)
T ss_pred CCCCHHHHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEE
T ss_conf 98946778999999987375999997775523336899999886399889999656767898789887788874787368
Q ss_pred ----------------C-----------------------CCCH-------------------HHC--------------
Q ss_conf ----------------2-----------------------6730-------------------110--------------
Q gi|254780233|r 165 ----------------L-----------------------DATD-------------------AQL-------------- 172 (624)
Q Consensus 165 ----------------l-----------------------~a~d-------------------e~l-------------- 172 (624)
+ +.++ +.+
T Consensus 166 ~~~Pig~g~~F~GvvDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~el~~~~~~~~d~~~~~~ 245 (526)
T PRK00741 166 ITWPIGMGKRFKGVYDLYNDEVELYQPGHGHTIQEFEIIKGLDNPELDEALGEDLAEQLREELELVQGASNEFDLEAFLA 245 (526)
T ss_pred EEEECCCCCCEEEEEEECCCEEEECCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHC
T ss_conf 88303678860378880138799803677884046605877877899987538999975535777731555106899973
Q ss_pred --CHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCCCCC----------CCCHHHCCCCCCCC--CC-CCCEEEE
Q ss_conf --426688788659164674223348641355532102454223----------32000001111013--67-7734999
Q gi|254780233|r 173 --DFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPPVI----------SEGEFKMIGTILEK--DP-FLGRIVT 237 (624)
Q Consensus 173 --d~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~P~~----------~e~pl~~~V~~i~~--d~-y~Gria~ 237 (624)
-+||+|+||+++ .|+.+|||+|++++|+|.. .+.||.++|||+.. || |+||++|
T Consensus 246 G~l~PVf~GSA~~n-----------~GV~~LLd~iv~~~PsP~~r~~~~~~v~p~~~~fsa~VFKiqanmDP~h~griaf 314 (526)
T PRK00741 246 GELTPVFFGSALNN-----------FGVQEFLDAFVEWAPAPQPRQTDERVVEPTEEKFSGFVFKIQANMDPKHRDRIAF 314 (526)
T ss_pred CCEEEEEEEECCCC-----------CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEE
T ss_conf 98028996200036-----------5699999999997799877777765447877774359999984037542543799
Q ss_pred EEECCCCCCCCCEEEEECCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCC
Q ss_conf 99607805159889996057850121145530110366534441125455432222332101221105565211233666
Q gi|254780233|r 238 GRIHSGTIKSNQNIKALSPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSIAGLVKATVADTFCDPSIDEPLKAQPI 317 (624)
Q Consensus 238 gRV~sGtlk~Gd~V~vl~~~g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIvaIaGl~~~~iGDTL~~~~~p~~Lp~i~i 317 (624)
+||+||+++.|++|++.+ .| +..|+++++.++|.++.+|++|.|||||+++++..+++|||||+.+ +..+++++.
T Consensus 315 ~RV~SG~l~~g~~v~n~r-~g---k~eri~~l~~~~g~~r~~V~ea~AGDIvgl~~~~~~~tGDTL~~~~-~l~~~~Ip~ 389 (526)
T PRK00741 315 MRVCSGKFEKGMKVRHVR-TG---KDVRISNALTFMAQDREHVEEAYAGDIIGLHNHGTIQIGDTFTEGE-KLKFTGIPN 389 (526)
T ss_pred EEEEEEEECCCCEEEECC-CC---CEEEHHHHHHHHCCCCEEEEEECCCCEEEECCCCCCCCCCEECCCC-CCCCCCCCC
T ss_conf 997511885799898525-79---5366326778744352351387699899971666300375520688-521068899
Q ss_pred CCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEECCHHHHHHHHHHHHHC-CEEEE
Q ss_conf 65421578612686554444321017889999999730283799998599975999963645688887412334-80330
Q gi|254780233|r 318 DPPTVTMTFGVNDSPLAGTEGDKVTSRMIRDRLFKEAEGNIALKIEESSSKDAFFVSGRGELQLAVLIETMRRE-GFELA 396 (624)
Q Consensus 318 ~~Ptis~~f~vn~sP~ag~eg~~~ts~~l~~rL~ke~~~dvsL~ve~~~~~~~~~v~GrGeLHL~IliE~mRRE-G~E~~ 396 (624)
+.|.+++++.+.+. ++ +.+++.+|.+++++|+ ++|..++++++++++|+|+|||+|+++||+|| |.|..
T Consensus 390 f~P~~~~~v~~~~~---~~------~kkl~~gL~~L~EEd~-~~v~~~~~t~e~il~gmGeLHlEVv~~RLk~eygVev~ 459 (526)
T PRK00741 390 FAPELFRRVRLKNP---LK------QKQLQKGLVQLSEEGA-VQVFRPLSNNDLILGAVGQLQFEVVAHRLKNEYNVEAI 459 (526)
T ss_pred CCCCEEEEEEECCH---HH------HHHHHHHHHHHCCCCC-EEEEECCCCCCEEEEEECHHHHHHHHHHHHHHHCCEEE
T ss_conf 99755799887988---88------9999999998554786-69887388998899971688999999999887397289
Q ss_pred CCCCEEEEEEECCEECCEEEEEEEECCHHHHHHHHHHHHHCCCEECCCCCCCCCEEEEEEEECHHHHHHHHH
Q ss_conf 157448998208826041688887313233107899887435401042136898499999961335656889
Q gi|254780233|r 397 VSRPRVVIKKEGDSLLEPIEEVVIDVDEEHSGAVVQKMTLHKSEMIELRPSGTGRVRLVFLSPTRGLIGYQS 468 (624)
Q Consensus 397 vs~P~V~~k~~dg~~lEPie~v~I~vp~ey~G~Vi~~l~~RrG~i~~m~~~~~g~~~l~~~vP~r~l~g~~~ 468 (624)
..+. ||..+--..+++ ...++.+....+..+-.+ ..|+ +.|..+++=-+.|..
T Consensus 460 ~e~~-------------~~~~arw~~~~~--~~~~~~~~~~~~~~~~~d--~~~~--~~~l~~~~~~~~~~~ 512 (526)
T PRK00741 460 YEPV-------------GVATARWVECDD--AKKLEEFKRKNRSNLALD--GGDN--LVYLAPNEVNLRLAQ 512 (526)
T ss_pred ECCC-------------CEEEEEEECCCC--HHHHHHHHHHCCCEEEEC--CCCC--EEEEECCHHHHHHHH
T ss_conf 7157-------------437999745899--899999874315708990--8989--899974988988899
No 17
>TIGR00490 aEF-2 translation elongation factor aEF-2; InterPro: IPR004543 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome , , . EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position , . This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. This entry represents archaeal EF2 proteins (also known as aEF2), which are more similar to eukaryotic EF2 than to bacterial EF2 (or EFG), both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD. More information about these proteins can be found at Protein of the Month: Elongation Factors .; GO: 0003746 translation elongation factor activity, 0005525 GTP binding, 0006414 translational elongation, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=611.33 Aligned_cols=467 Identities=31% Similarity=0.546 Sum_probs=411.1
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEE--E--CCEEEEEECC
Q ss_conf 68024314999854689877889999998396142322000003885779870960646799999--8--9979999728
Q gi|254780233|r 14 LGYMQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIV--W--NDVRINIVDT 89 (624)
Q Consensus 14 ~~~~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~--~--~~~~iNiiDT 89 (624)
.++..||||+|+||+|||||||.|.||.-+|.++..-..+.+++|+++.|++|||||.|.|+|+- | ++|.||+|||
T Consensus 14 ~~~~~irniGi~ahidhGkttlsdnllaGaGmis~elaG~q~~ldfde~e~~rGiti~aanvsmvh~yeG~~ylinlidt 93 (724)
T TIGR00490 14 YKPEFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGEQLYLDFDEQEQERGITIDAANVSMVHEYEGNEYLINLIDT 93 (724)
T ss_pred HHHHHHHHEEEEEEECCCCCHHHHHHHHCCCHHHHHHCCCCEEECCCHHHHHCCCEEEEEEEEEEEEECCCCEEEEEECC
T ss_conf 30122210003786317751122344421332345405641000244135237726764115676531475024333148
Q ss_pred CCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC-----------CCCHHHHHHHH
Q ss_conf 9875407999999874217899997687886478999999997299789999754366-----------74025689999
Q gi|254780233|r 90 PGHADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRS-----------DARADEVINEV 158 (624)
Q Consensus 90 PGH~DF~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~-----------~a~~~~v~~ei 158 (624)
|||+||+|+|.|+++++||+++||+|+||+||||++||++|+..+++|++||||+||- ..|+-+++.++
T Consensus 94 PGhvdfGGdvtramra~dG~~vvv~aveG~mPqtetvlrqal~e~v~Pvlf~nkvdrli~el~l~~~~lq~r~~k~i~~~ 173 (724)
T TIGR00490 94 PGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLINELKLTPEELQERLIKIIAEV 173 (724)
T ss_pred CCCCCCCCHHHHHHHHHCCEEEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 86210562488887764763899950256576157899999873187067723478888862468889999999999999
Q ss_pred HHHHHHCCCCH----HHCC---HHHHHHHHHCCEECCCCCCCCCCCC------------------------HHHHHHHHC
Q ss_conf 98886226730----1104---2668878865916467422334864------------------------135553210
Q gi|254780233|r 159 FDLFSALDATD----AQLD---FPILYGSGRFGWMSDSSDGSRDQGM------------------------VPLLNLIVD 207 (624)
Q Consensus 159 ~dlf~~l~a~d----e~ld---~Pv~~~Sa~~G~~~~~~~~~~~~gl------------------------~~Lld~Ii~ 207 (624)
..|+..+..++ ++++ -.+.|+||...|+...+... ..|+ .-+||++++
T Consensus 174 n~li~~m~P~~~~~~W~~~v~~Gs~afGsa~~nWa~~vP~~~-~~Gi~f~~~~~~~~e~~~~ela~k~Pl~~v~l~mv~~ 252 (724)
T TIGR00490 174 NKLIKKMAPEEFKDKWKVRVEDGSVAFGSAYYNWAISVPIMK-KTGITFKDIYKYIKEDKQKELAKKAPLHQVVLDMVIK 252 (724)
T ss_pred HHHHHHCCCCCHHCCCEEEECCCCCHHHHHHHHHEEECCCCC-CCCCCHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHH
T ss_conf 999974176100000047651564101122210002044300-1377599999986301145576406588999999997
Q ss_pred CCCCCC--------------------------CCCCHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCE
Q ss_conf 245422--------------------------332000001111013677734999996078051598899960578501
Q gi|254780233|r 208 HVPPPV--------------------------ISEGEFKMIGTILEKDPFLGRIVTGRIHSGTIKSNQNIKALSPDGALV 261 (624)
Q Consensus 208 ~iP~P~--------------------------~~e~pl~~~V~~i~~d~y~Gria~gRV~sGtlk~Gd~V~vl~~~g~~~ 261 (624)
|+|+|. ++++|+...|+++..|+..|.++++|+|+|+++.|+++++++..
T Consensus 253 hlPsP~e~q~~r~~~~W~Gd~~se~G~am~~~dP~GP~a~~~t~~~~~~~aG~~~~~r~y~G~i~~G~e~y~v~~~---- 328 (724)
T TIGR00490 253 HLPSPAEAQKYRIPVIWKGDLNSEAGKAMLNCDPEGPLAVMITKIVVDKHAGEVAVGRLYSGAIKKGSEVYLVDRK---- 328 (724)
T ss_pred HCCCCHHHHHHHHHHHEECCCCCHHCCHHCCCCCCCCEEEEEEEEEEECCCCCEEEEEEECCEECCCCEEEEECCH----
T ss_conf 4489622444010010104654000542100489986144556556603668167755531500368668986430----
Q ss_pred EECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCC-CCCCCCCC-CCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 21145530110366534441125455432222332101221105565-21123366-66542157861268655444432
Q gi|254780233|r 262 EVGRVSKILAFRGIDRQPIDEAHAGDIVSIAGLVKATVADTFCDPSI-DEPLKAQP-IDPPTVTMTFGVNDSPLAGTEGD 339 (624)
Q Consensus 262 ~~~kV~~L~~~~G~~r~~v~ea~AGDIvaIaGl~~~~iGDTL~~~~~-p~~Lp~i~-i~~Ptis~~f~vn~sP~ag~eg~ 339 (624)
...||.++-.|.|.+|+++|+..||+|+|+.|++++..|+|+|++.. -.|+..+. +.+|++.+++.+.+ .+
T Consensus 329 ~k~~~q~v~~ymGP~r~~~d~~~aGni~a~~G~k~a~aG~t~C~~~~~~~~fe~~~h~sePv~t~a~eakn-------~~ 401 (724)
T TIGR00490 329 AKARIQQVGVYMGPERVEVDEIPAGNIVAVVGLKEAVAGETICSTDKKIKPFEAIKHISEPVVTVAIEAKN-------TK 401 (724)
T ss_pred HHCCEEEEEEEECCEECCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCC-------CC
T ss_conf 00211246677667020124226775688740321114530025212321334323204753799971467-------54
Q ss_pred CHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEECCHHHHHHHHHHHHHC--CEEEECCCCEEEEEEE----------
Q ss_conf 1017889999999730283799998599975999963645688887412334--8033015744899820----------
Q gi|254780233|r 340 KVTSRMIRDRLFKEAEGNIALKIEESSSKDAFFVSGRGELQLAVLIETMRRE--GFELAVSRPRVVIKKE---------- 407 (624)
Q Consensus 340 ~~ts~~l~~rL~ke~~~dvsL~ve~~~~~~~~~v~GrGeLHL~IliE~mRRE--G~E~~vs~P~V~~k~~---------- 407 (624)
.+ .+|-+-|.+...+||+++++-++++++..+||||||||+|..++.++. +.++.++.|-|+||+.
T Consensus 402 dl--Pklievlr~~~~edPt~~~~~neetGehl~sGmGelh~e~~~~~~~~~~~~~~~~~~~Pivv~retv~G~~~~ve~ 479 (724)
T TIGR00490 402 DL--PKLIEVLRQVAKEDPTVKVEINEETGEHLISGMGELHLEIIVKKIREKDAGVEVETSEPIVVYRETVTGTSPVVEG 479 (724)
T ss_pred CC--HHHHHHHHHHHCCCCEEEEEEECCCCCHHHHCCCHHHHHHHHHHHHHHHCCCEEEECCCEEEEECCCCCCCCCCCC
T ss_conf 40--5899999974134972799970444512331222233455665664411230376448568971010476663257
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q gi|254780233|r 408 -------------------------------------------------------------------------------- 407 (624)
Q Consensus 408 -------------------------------------------------------------------------------- 407 (624)
T Consensus 480 ksPnkhn~~y~~~eP~~~~v~q~~~eG~~~~~~~~~k~~~~~~~~l~~aG~~~eea~~~~~~ye~n~~~~~t~Gi~~l~e 559 (724)
T TIGR00490 480 KSPNKHNRFYIVVEPLEESVLQAFKEGKIKDVKVKKKLDDEIAKELIEAGLDKEEAKRVEEVYEGNLFINVTRGIQYLDE 559 (724)
T ss_pred CCCCCCCEEEEEEECCHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEHHHHHHHHHH
T ss_conf 78722154789980633799988635850001344456789999998727886788899987405313422455788999
Q ss_pred --------------------------------------------------------------CCEECCEEEEEEEECCHH
Q ss_conf --------------------------------------------------------------882604168888731323
Q gi|254780233|r 408 --------------------------------------------------------------GDSLLEPIEEVVIDVDEE 425 (624)
Q Consensus 408 --------------------------------------------------------------dg~~lEPie~v~I~vp~e 425 (624)
...+|||+..+.|.+|.+
T Consensus 560 ~~el~~~Gf~~am~~GP~a~e~~~G~k~kl~d~~~heda~hrGPaq~~Pa~r~~i~~a~~~a~P~lleP~q~~~i~~Pqd 639 (724)
T TIGR00490 560 VKELILEGFKEAMRNGPVAKEKVMGVKVKLVDAKLHEDAVHRGPAQVIPAVRKGIFAAMLQAEPVLLEPIQKVFINVPQD 639 (724)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEECHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHCCCEEEEEECCHH
T ss_conf 99999998999974288421033405899863110022312470256588899999988505850213210013415514
Q ss_pred HHHHHHHHHHHCCCEECCCCCCCCCEEEEEEEECHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCC
Q ss_conf 3107899887435401042136898499999961335656889988532761678888705301357878
Q gi|254780233|r 426 HSGAVVQKMTLHKSEMIELRPSGTGRVRLVFLSPTRGLIGYQSQLMTDTRGTAIMNRLFHSYQPHKGEIG 495 (624)
Q Consensus 426 y~G~Vi~~l~~RrG~i~~m~~~~~g~~~l~~~vP~r~l~g~~~~l~s~T~G~g~~~~~f~~Y~p~~g~i~ 495 (624)
|+|+++..+..|||++++|...|+ .+.+.+.+|..+|+||....|+.|+|+.+.+.++.+|+..|-++.
T Consensus 640 ~mG~~~rei~~rrGqi~~m~~eGd-m~~~~~~~Pv~emfGfaG~ir~at~G~~~Ws~e~aG~e~~P~~l~ 708 (724)
T TIGR00490 640 FMGAATREIQNRRGQILEMKQEGD-MVTIKAKVPVAEMFGFAGAIRGATEGRCLWSTEFAGFEKVPRELQ 708 (724)
T ss_pred HHHHHHHHHHCCCCCEEEEECCCC-EEEEEECCCHHHHHCCCCCCCCCCCCCEEEEECCCCHHHHHHHHH
T ss_conf 556788765125751776404785-799972477577402100101235772466411011453259999
No 18
>KOG0464 consensus
Probab=100.00 E-value=0 Score=589.54 Aligned_cols=453 Identities=26% Similarity=0.380 Sum_probs=384.4
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCC--EECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCC
Q ss_conf 8024314999854689877889999998396142322000--00388577987096064679999989979999728987
Q gi|254780233|r 15 GYMQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSE--RVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGH 92 (624)
Q Consensus 15 ~~~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~--~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH 92 (624)
.+.+||||+||||+|+||||.+|++||.+|.++..|.|++ +|.|++++||||||||.|..+.|.|++|+||+||||||
T Consensus 33 ~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpgh 112 (753)
T KOG0464 33 AIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGH 112 (753)
T ss_pred CHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEECCCCCCEEEEECCCCC
T ss_conf 36664113069985178740678899774022104656788537788888886483665404421235616765248884
Q ss_pred CCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHH----------
Q ss_conf 5407999999874217899997687886478999999997299789999754366740256899999888----------
Q gi|254780233|r 93 ADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLF---------- 162 (624)
Q Consensus 93 ~DF~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf---------- 162 (624)
+||.-||||.+++.|||+.|.||..||++||..||++|...++|.+.||||||+-.|+|+..++.+.+-+
T Consensus 113 vdf~leverclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~~anfe~avdsi~ekl~ak~l~l~lp 192 (753)
T KOG0464 113 VDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKLAANFENAVDSIEEKLGAKALKLQLP 192 (753)
T ss_pred CEEEEEHHHHHHHHCCEEEEEECCCCCCCCEEEEEHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 03798789888775073899845677664122100030135784533023466655546668899998738741789701
Q ss_pred -----------HH----------CCCCH---------------------------------------------------H
Q ss_conf -----------62----------26730---------------------------------------------------1
Q gi|254780233|r 163 -----------SA----------LDATD---------------------------------------------------A 170 (624)
Q Consensus 163 -----------~~----------l~a~d---------------------------------------------------e 170 (624)
.+ ++.+| +
T Consensus 193 i~eak~fnkg~ldil~ke~l~~ncnsndgkd~e~~plle~ndpel~e~~ae~knal~~qlad~~~dfad~~ldef~~n~d 272 (753)
T KOG0464 193 IGEAKGFNKGFLDILHKEKLLGNCNSNDGKDFENKPLLEKNDPELAEELAEAKNALCEQLADLDADFADKFLDEFDENFD 272 (753)
T ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC
T ss_conf 55324544027999887434577788754444578642348978999999999999998861127789999987505533
Q ss_pred -----------------HCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCCCCCC--------CCHHHCCCCC
Q ss_conf -----------------104266887886591646742233486413555321024542233--------2000001111
Q gi|254780233|r 171 -----------------QLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPPVIS--------EGEFKMIGTI 225 (624)
Q Consensus 171 -----------------~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~P~~~--------e~pl~~~V~~ 225 (624)
|--.|++++||.. ++|+.||||++.-|+|+|... ...++++.|+
T Consensus 273 ~i~a~elksai~~lt~aq~a~~i~cgsaik-----------nkgiqplldavtmylpspeernyeflqwykddlcalafk 341 (753)
T KOG0464 273 KIDAEELKSAIHELTCAQKAAPILCGSAIK-----------NKGIQPLLDAVTMYLPSPEERNYEFLQWYKDDLCALAFK 341 (753)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCEEHHHHHC-----------CCCCCCHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 467899999999986663201222003440-----------367651233443226883540227776520137777666
Q ss_pred CCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECC
Q ss_conf 01367773499999607805159889996057850121145530110366534441125455432222332101221105
Q gi|254780233|r 226 LEKDPFLGRIVTGRIHSGTIKSNQNIKALSPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSIAGLVKATVADTFCD 305 (624)
Q Consensus 226 i~~d~y~Gria~gRV~sGtlk~Gd~V~vl~~~g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIvaIaGl~~~~iGDTL~~ 305 (624)
+-+|.-+|.++|.|||||+++.+..+.+.+... .+++.++|.+...+..+++...||+|...+|++.+.+|||+.+
T Consensus 342 vlhdkqrg~l~fmriysgsi~~~~ai~nin~~~----se~~~kl~~pfade~~~i~qlsagnialt~glk~tatgdtiva 417 (753)
T KOG0464 342 VLHDKQRGPLSFMRIYSGSIHNNLAIFNINGMC----SEGILKLFLPFADEHREIEQLSAGNIALTAGLKHTATGDTIVA 417 (753)
T ss_pred HHCCCCCCCEEEEEEECCCCCCCEEEEECCCCC----CCCHHHHHCCCHHHHHHHHHCCCCCEEEEECCEEECCCCEEEE
T ss_conf 530013486268998615446761366226653----3111765355415431021203464799950143125776883
Q ss_pred CCC------------------------CCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 565------------------------21123366665421578612686554444321017889999999730283799
Q gi|254780233|r 306 PSI------------------------DEPLKAQPIDPPTVTMTFGVNDSPLAGTEGDKVTSRMIRDRLFKEAEGNIALK 361 (624)
Q Consensus 306 ~~~------------------------p~~Lp~i~i~~Ptis~~f~vn~sP~ag~eg~~~ts~~l~~rL~ke~~~dvsL~ 361 (624)
... ..-+.++++|+|+....+.+.+ +. +- .++..+|.-+..+||||+
T Consensus 418 skasa~aa~qk~~~egekk~~q~~daerll~agie~pd~vffc~iepps--~~-k~------~d~ehale~lqredpslk 488 (753)
T KOG0464 418 SKASAEAAAQKAAGEGEKKHLQNKDAERLLFAGIEIPDAVFFCCIEPPS--LR-KL------NDFEHALECLQREDPSLK 488 (753)
T ss_pred CCHHHHHHHHHHHCCCHHHCCCCCCCCCEEEECCCCCCCEEEEECCCCC--CC-CC------HHHHHHHHHHHCCCCCEE
T ss_conf 3054899999861452343058764000256135578736899525853--23-21------348999998732387616
Q ss_pred EEECCCCCEEEEEECCHHHHHHHHHHHHHC-CEEEECCCCEEEEEE----------------------------------
Q ss_conf 998599975999963645688887412334-803301574489982----------------------------------
Q gi|254780233|r 362 IEESSSKDAFFVSGRGELQLAVLIETMRRE-GFELAVSRPRVVIKK---------------------------------- 406 (624)
Q Consensus 362 ve~~~~~~~~~v~GrGeLHL~IliE~mRRE-G~E~~vs~P~V~~k~---------------------------------- 406 (624)
+.-+++++++++.||||||++++-.|++|| |.+.-+++-+|.||+
T Consensus 489 ir~d~dsgqtil~~~gelhie~ihdrikrey~ldtfig~lqvayre~i~~~lr~t~~ld~~lgdkk~~~~velear~~~t 568 (753)
T KOG0464 489 IRFDPDSGQTILCGMGELHIEAIHDRIKREYGLDTFIGKLQVAYREMILEELRATAKLDDGLGDKKHLEFVELEARLEET 568 (753)
T ss_pred EEECCCCCCEEEECCCHHHHHHHHHHHHHHCCCHHEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCC
T ss_conf 87668888668850622329999999876407321110688999999999866666440243444563389998640454
Q ss_pred --------E-----------------------------------------------------------------------
Q ss_conf --------0-----------------------------------------------------------------------
Q gi|254780233|r 407 --------E----------------------------------------------------------------------- 407 (624)
Q Consensus 407 --------~----------------------------------------------------------------------- 407 (624)
+
T Consensus 569 qa~ip~kkiefe~~es~n~~~l~~sqeaie~g~~na~~~gpl~g~pi~~v~itl~~~~i~~gk~n~alisac~qkcvqea 648 (753)
T KOG0464 569 QAHIPFKKIEFELAESANEGLLDVSQEAIEEGCHNACLNGPLAGSPIHAVAITLHECIIHGGKINPALISACAQKCVQEA 648 (753)
T ss_pred CCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHEEEEEEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 34365136776310114613446479999866778885698668850202576577786388578899999999999999
Q ss_pred ----CCEECCEEEEEEEECCH-HHHHHHHHHHHHCCCEECCCCCCCCCEE-EEEEEECHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf ----88260416888873132-3310789988743540104213689849-99999613356568899885327616788
Q gi|254780233|r 408 ----GDSLLEPIEEVVIDVDE-EHSGAVVQKMTLHKSEMIELRPSGTGRV-RLVFLSPTRGLIGYQSQLMTDTRGTAIMN 481 (624)
Q Consensus 408 ----dg~~lEPie~v~I~vp~-ey~G~Vi~~l~~RrG~i~~m~~~~~g~~-~l~~~vP~r~l~g~~~~l~s~T~G~g~~~ 481 (624)
|-+++||.|++.|++.. +|...|..+|.+|||.++..+...+..+ ++.+-+|.++..||+..+||+|+|.|.|.
T Consensus 649 lkkad~~l~eplm~lei~i~~dd~~qpiladl~qrr~~~e~~~aredneirri~~~lplaei~~~s~~lrtltsg~a~~a 728 (753)
T KOG0464 649 LKKADKQLLEPLMELEIEIANDDPLQPILADLAQRRAHFEEIDAREDNEIRRICAFLPLAEIEGLSKTLRTLTSGFADFA 728 (753)
T ss_pred HHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHCCCHHCCCCCCCCHHEEEEEEEHHHHHCHHHHHHHHHCCCCEEE
T ss_conf 86666777554343289970489753789999986225011134343301314676457895157888998744661179
Q ss_pred EEEECCCCCC
Q ss_conf 8870530135
Q gi|254780233|r 482 RLFHSYQPHK 491 (624)
Q Consensus 482 ~~f~~Y~p~~ 491 (624)
.+|.+|+.+.
T Consensus 729 le~~~yqamn 738 (753)
T KOG0464 729 LEFRGYQAMN 738 (753)
T ss_pred EEECCHHHCC
T ss_conf 9860013158
No 19
>KOG0469 consensus
Probab=100.00 E-value=0 Score=530.04 Aligned_cols=472 Identities=25% Similarity=0.407 Sum_probs=376.3
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEE--------------
Q ss_conf 680243149998546898778899999983961423220000038857798709606467999998--------------
Q gi|254780233|r 14 LGYMQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVW-------------- 79 (624)
Q Consensus 14 ~~~~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~-------------- 79 (624)
++..||||+.+||||||||+||+|.|...+|.++.....+.|+||+-..|+||||||+|...|+.+
T Consensus 14 ~k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~ 93 (842)
T KOG0469 14 DKKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEG 93 (842)
T ss_pred CCCCCCCCCEEEEEECCCCCHHHHHHHHHHCEEEECCCCCCCCCCCCCCHHHCCEEEEEEEEEEHHHHHHHHHHHHCCCC
T ss_conf 05235442048998437855006778776151241226785124341015655657632013201213176799851778
Q ss_pred --CCEEEEEECCCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHH
Q ss_conf --997999972898754079999998742178999976878864789999999972997899997543667402568999
Q gi|254780233|r 80 --NDVRINIVDTPGHADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDARADEVINE 157 (624)
Q Consensus 80 --~~~~iNiiDTPGH~DF~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~e 157 (624)
+++.||+||.|||+||+.||..+|++.||||+|||..+|+.+||++||++|+...++|++++|||||.--..+--.++
T Consensus 94 d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~DRAlLELq~~~Ee 173 (842)
T KOG0469 94 DGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKMDRALLELQLSQEE 173 (842)
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHEEEECCCCEEEEECCCCEEECHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCHHH
T ss_conf 77633689516898545234423104732670899972474485259999999874335247741466788861378999
Q ss_pred HHHHHHH----CC----------CCHHHCC---HHHHHHHHHCCEECCC-------------------------------
Q ss_conf 9988862----26----------7301104---2668878865916467-------------------------------
Q gi|254780233|r 158 VFDLFSA----LD----------ATDAQLD---FPILYGSGRFGWMSDS------------------------------- 189 (624)
Q Consensus 158 i~dlf~~----l~----------a~de~ld---~Pv~~~Sa~~G~~~~~------------------------------- 189 (624)
++..|.. .+ -.+.+++ -.|-|+|+++||+-..
T Consensus 174 Lyqtf~R~VE~vNviisTy~d~~~g~~~v~P~kg~v~F~SGLhGWaFTlrQFa~~Y~~KF~~~~~kmm~~LWg~~~f~~k 253 (842)
T KOG0469 174 LYQTFQRIVENVNVIISTYGDGPMGDVQVDPEKGTVGFGSGLHGWAFTLRQFAEMYAKKFGIDVRKMMNRLWGDNFFNPK 253 (842)
T ss_pred HHHHHHHHHHCCCEEEEECCCCCCCCEEECCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCC
T ss_conf 99999999732317998414677673475377771100355411454599999999998287699999976401356866
Q ss_pred ---CCC-----C-------------------------------------------------------------CCCCCHH
Q ss_conf ---422-----3-------------------------------------------------------------3486413
Q gi|254780233|r 190 ---SDG-----S-------------------------------------------------------------RDQGMVP 200 (624)
Q Consensus 190 ---~~~-----~-------------------------------------------------------------~~~gl~~ 200 (624)
++. . +-.--+.
T Consensus 254 tkk~~~s~t~~~gn~~~r~F~~~iLdPIykvfdaimN~kkeei~~llekl~v~lk~~~kd~eGK~LlK~vMr~wLPAada 333 (842)
T KOG0469 254 TKKWSKSATDAEGNPLRRAFCMFILDPIYKVFDAIMNFKKEEIATLLEKLEVTLKGDEKDLEGKALLKVVMRKWLPAADA 333 (842)
T ss_pred CCCCCCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHCCHHHHHHHHHHHCCEECCCCCCCCCHHHHHHHHHHHCCHHHH
T ss_conf 77643323454468555641577603689999998601288899999974133125203665438999999974562888
Q ss_pred HHHHHHCCCCCCC--------------------------CCCCHHHCCCCCCCCCCCCCE-EEEEEECCCCCCCCCEEEE
Q ss_conf 5553210245422--------------------------332000001111013677734-9999960780515988999
Q gi|254780233|r 201 LLNLIVDHVPPPV--------------------------ISEGEFKMIGTILEKDPFLGR-IVTGRIHSGTIKSNQNIKA 253 (624)
Q Consensus 201 Lld~Ii~~iP~P~--------------------------~~e~pl~~~V~~i~~d~y~Gr-ia~gRV~sGtlk~Gd~V~v 253 (624)
||++|.-|+|+|. ++++|+.|+|++..-.+-.|| ++||||+||++..|+++.+
T Consensus 334 llemIalhLPSPvtaQkyR~e~LYEGP~DDe~a~aik~CD~~aplmmYvSKMvPtsDkgRFyAFGRVFsG~v~~G~KvRi 413 (842)
T KOG0469 334 LLEMIALHLPSPVTAQKYRAEYLYEGPADDEAAVAIKNCDPKAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVFTGLKVRI 413 (842)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCEEEEEEECCCCCCCCEEEEEEEEECCEECCCCEEEE
T ss_conf 99999852899057888889876118873577667652699987277564016557874279973344230136857887
Q ss_pred ECCCCCCEEEC-----CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC-CCEECCCCCCCCCCCCCC-CCCCEEEEE
Q ss_conf 60578501211-----45530110366534441125455432222332101-221105565211233666-654215786
Q gi|254780233|r 254 LSPDGALVEVG-----RVSKILAFRGIDRQPIDEAHAGDIVSIAGLVKATV-ADTFCDPSIDEPLKAQPI-DPPTVTMTF 326 (624)
Q Consensus 254 l~~~g~~~~~~-----kV~~L~~~~G~~r~~v~ea~AGDIvaIaGl~~~~i-GDTL~~~~~p~~Lp~i~i-~~Ptis~~f 326 (624)
..++....+.. -|.....++|..-.+++...||+|+.+.|+++.-+ +.||+..++..-+..++| .-|++.+++
T Consensus 414 qgPnY~PGkkedl~~K~iqRtvlMMGr~vepied~PaGNIiGlvGvDqfLvKtGTiTt~e~AHNmrvMKFSVSPVV~VAV 493 (842)
T KOG0469 414 QGPNYVPGKKEDLYIKAIQRTVLMMGRFVEPIEDCPAGNIIGLVGVDQFLVKTGTITTSEAAHNMRVMKFSVSPVVRVAV 493 (842)
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEHHHHHHCCCCEEEHHHHCCCEEEEEECCCEEEEEE
T ss_conf 58998997088888989999999862655545669887577785166764304723205541231478862264189998
Q ss_pred ECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEECCHHHHHHHHHHHHHC--CEEEECCCCEEEE
Q ss_conf 12686554444321017889999999730283799998599975999963645688887412334--8033015744899
Q gi|254780233|r 327 GVNDSPLAGTEGDKVTSRMIRDRLFKEAEGNIALKIEESSSKDAFFVSGRGELQLAVLIETMRRE--GFELAVSRPRVVI 404 (624)
Q Consensus 327 ~vn~sP~ag~eg~~~ts~~l~~rL~ke~~~dvsL~ve~~~~~~~~~v~GrGeLHL~IliE~mRRE--G~E~~vs~P~V~~ 404 (624)
.+.. ...+ .+|.+.|.|++.+||-..+..+++ ++.++.|-|||||+|.+..|... +.-+..|.|.|.|
T Consensus 494 e~Kn-------p~DL--pKLvEGLkrLakSDP~v~~~~~es-GehiiAgaGeLHLEICLkDLeedhA~iPlk~sdPvVsY 563 (842)
T KOG0469 494 EAKN-------PADL--PKLVEGLKRLAKSDPMVQCIIEES-GEHIIAGAGELHLEICLKDLEEDHACIPLKKSDPVVSY 563 (842)
T ss_pred ECCC-------HHHH--HHHHHHHHHHHCCCCEEEEEECCC-CCEEEECCCHHHHHHHHHHHHHCCCCCCEECCCCEEEE
T ss_conf 3278-------3464--889999987742698499996268-85478515502179887667650047740058980563
Q ss_pred EEE-----------------------------------------------------------------------------
Q ss_conf 820-----------------------------------------------------------------------------
Q gi|254780233|r 405 KKE----------------------------------------------------------------------------- 407 (624)
Q Consensus 405 k~~----------------------------------------------------------------------------- 407 (624)
+|.
T Consensus 564 rEtvs~~ss~~~lsKSpNKHNRi~mtaeP~~~~l~~~i~~g~v~~rd~fK~rAr~~aeky~~dvt~aRKIWCfgPd~tg~ 643 (842)
T KOG0469 564 RETVSEESSQTCLSKSPNKHNRIYMTAEPMDDGLSDDIENGKVNARDEFKARARILAEKYGWDVTEARKIWCFGPDGTGP 643 (842)
T ss_pred ECCCCCCCCHHHHCCCCCCCCEEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHEEEEECCCCCCC
T ss_conf 20025510024531598624636885035872144565348658167899999988987287515332346767899997
Q ss_pred -----------------------------------------------------------------------------CCE
Q ss_conf -----------------------------------------------------------------------------882
Q gi|254780233|r 408 -----------------------------------------------------------------------------GDS 410 (624)
Q Consensus 408 -----------------------------------------------------------------------------dg~ 410 (624)
+..
T Consensus 644 Nll~D~TK~vqylnEIKdsVvagFqwA~keG~l~~E~mRgvrfni~DvtLHADAIHRGggQiipt~rr~~ya~~l~A~P~ 723 (842)
T KOG0469 644 NLLVDQTKGVQYLNEIKDSVVAGFQWATKEGPLFGENMRGVRFNILDVTLHADAIHRGGGQIIPTARRVLYASVLTAGPI 723 (842)
T ss_pred CEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEEHHHHHCCCCEECHHHHHHHHHHHHHCCCE
T ss_conf 37885212668999888989888777750687410010230577666566644565278703627899999988715862
Q ss_pred ECCEEEEEEEECCHHHHHHHHHHHHHCCCEECCCCCC-CCCEEEEEEEECHHHHHHHHHHHHHHCCCCEEEEEEEECCCC
Q ss_conf 6041688887313233107899887435401042136-898499999961335656889988532761678888705301
Q gi|254780233|r 411 LLEPIEEVVIDVDEEHSGAVVQKMTLHKSEMIELRPS-GTGRVRLVFLSPTRGLIGYQSQLMTDTRGTAIMNRLFHSYQP 489 (624)
Q Consensus 411 ~lEPie~v~I~vp~ey~G~Vi~~l~~RrG~i~~m~~~-~~g~~~l~~~vP~r~l~g~~~~l~s~T~G~g~~~~~f~~Y~p 489 (624)
++||+..++|.||+.++|.|.+-|++|||.+.+-++. |+-...+.+..|..+.+||..+|+|.|+|.+.-++.|+||++
T Consensus 724 l~EPvylvEIq~pe~avGgiy~vLn~kRG~v~~e~q~~Gtp~f~vkayLPVnESFgFt~dLrs~t~GqAfpq~vFdHws~ 803 (842)
T KOG0469 724 LQEPVYLVEIQCPEQAVGGIYGVLNRKRGHVFEEEQVPGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQMVFDHWSI 803 (842)
T ss_pred ECCCEEEEEEECCHHHHCHHHHEEECCCCCEECCCCCCCCCCEEEEEEEECCCCCCCCHHHHCCCCCCCCCCEEEECCCC
T ss_conf 11746899986714530211201001554200112168986268999852243446646553166776554024310333
Q ss_pred CCCCCC
Q ss_conf 357878
Q gi|254780233|r 490 HKGEIG 495 (624)
Q Consensus 490 ~~g~i~ 495 (624)
.+|+..
T Consensus 804 lpgdp~ 809 (842)
T KOG0469 804 LPGDPL 809 (842)
T ss_pred CCCCCC
T ss_conf 799988
No 20
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=0 Score=446.43 Aligned_cols=354 Identities=27% Similarity=0.436 Sum_probs=294.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCC------EECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCC
Q ss_conf 24314999854689877889999998396142322000------003885779870960646799999899799997289
Q gi|254780233|r 17 MQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSE------RVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTP 90 (624)
Q Consensus 17 ~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~------~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTP 90 (624)
.+=|++|||+|-|+|||||+|.||...|+|+..|.|.. ...|+|+.||+|||+|.|....|+|+++.|||+|||
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AGtVk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTP 89 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTP 89 (528)
T ss_pred HHHCCEEEEECCCCCCCCHHHHHHHHCCHHHHCCEEEECCCCCCCCCHHHHHHHHCCCEEEEEEEEEECCCEEEECCCCC
T ss_conf 64340368856888851188999972303430550122257763422778888756855876578760388488614799
Q ss_pred CCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHH-H-----
Q ss_conf 8754079999998742178999976878864789999999972997899997543667402568999998886-2-----
Q gi|254780233|r 91 GHADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLFS-A----- 164 (624)
Q Consensus 91 GH~DF~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~-~----- 164 (624)
||.||+-+..|.|.++|+||.|+||+.|++|||+..+.-|...++|++-|||||||+.-+|-+.++||.+-+. +
T Consensus 90 GHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i~~~Pit 169 (528)
T COG4108 90 GHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGRDPLELLDEIEEELGIQCAPIT 169 (528)
T ss_pred CCCCCCHHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCEECCC
T ss_conf 86543236789998641046898603586688999999985059846997502365668868999999998577503552
Q ss_pred ---------------------------------------C---------CCCH-HH----CC------------------
Q ss_conf ---------------------------------------2---------6730-11----04------------------
Q gi|254780233|r 165 ---------------------------------------L---------DATD-AQ----LD------------------ 173 (624)
Q Consensus 165 ---------------------------------------l---------~a~d-e~----ld------------------ 173 (624)
+ +.+. +| ++
T Consensus 170 WPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~EL~~~a~~~Fd~~~fl~G~ 249 (528)
T COG4108 170 WPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREELELVQGAGNEFDLEAFLAGE 249 (528)
T ss_pred CCCCCCCCCCEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCHHHHHCCC
T ss_conf 44568856432235035879984267776544344445788867777624479999999999997413320889885696
Q ss_pred -HHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCCCCCC----------CCHHHCCCCCCCCC---CCCCEEEEEE
Q ss_conf -266887886591646742233486413555321024542233----------20000011110136---7773499999
Q gi|254780233|r 174 -FPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPPVIS----------EGEFKMIGTILEKD---PFLGRIVTGR 239 (624)
Q Consensus 174 -~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~P~~~----------e~pl~~~V~~i~~d---~y~Gria~gR 239 (624)
-||+|+||+.+ -|++.+||+++++-|+|... +..|..+|||+.++ .++-||++.|
T Consensus 250 ~TPVFFGSAl~N-----------FGV~~~L~~~~~~AP~P~~r~~~~~~v~p~e~kfsGFVFKIQANMDp~HRDRIAFmR 318 (528)
T COG4108 250 LTPVFFGSALGN-----------FGVDHFLDALVDWAPSPRARQADTREVEPTEDKFSGFVFKIQANMDPKHRDRIAFMR 318 (528)
T ss_pred CCCEEEHHHHHC-----------CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEE
T ss_conf 011570332311-----------588999999996389986544666731688775434899997489943342036786
Q ss_pred ECCCCCCCCCEEEEECCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCC
Q ss_conf 60780515988999605785012114553011036653444112545543222233210122110556521123366665
Q gi|254780233|r 240 IHSGTIKSNQNIKALSPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSIAGLVKATVADTFCDPSIDEPLKAQPIDP 319 (624)
Q Consensus 240 V~sGtlk~Gd~V~vl~~~g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIvaIaGl~~~~iGDTL~~~~~p~~Lp~i~i~~ 319 (624)
|+||.+.+|+++...+ .| +..+++.-..|.+.+|..+++|.||||+.+..--.+.||||++..+ ...+++++.-.
T Consensus 319 V~SGkferGMk~~~~r-tg---K~~~ls~~~~f~A~dRe~ve~A~aGDIIGl~nhGt~~IGDT~t~Ge-~~~f~giP~Fa 393 (528)
T COG4108 319 VCSGKFERGMKVTHVR-TG---KDVKLSDALTFMAQDRETVEEAYAGDIIGLHNHGTIQIGDTFTEGE-KLKFTGIPNFA 393 (528)
T ss_pred ECCCCCCCCCEEEEEE-CC---CCEEECCCHHHHHHHHHHHHHCCCCCEEECCCCCCEEECCEECCCC-EEEECCCCCCC
T ss_conf 3056435886533024-48---7256161076764216657542687767146787213266631585-56536899879
Q ss_pred CCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEECCHHHHHHHHHHHHHCCEEEEC
Q ss_conf 421578612686554444321017889999999730283799998599975999963645688887412334803301
Q gi|254780233|r 320 PTVTMTFGVNDSPLAGTEGDKVTSRMIRDRLFKEAEGNIALKIEESSSKDAFFVSGRGELQLAVLIETMRREGFELAV 397 (624)
Q Consensus 320 Ptis~~f~vn~sP~ag~eg~~~ts~~l~~rL~ke~~~dvsL~ve~~~~~~~~~v~GrGeLHL~IliE~mRREG~E~~v 397 (624)
|-+-+.+...+ |+ -..+++..|..+.++-+. ++-....+...+++.-|.||.+|+.+||+.| |-+.+
T Consensus 394 PElfrrvrlkd-~~--------K~Kql~Kgl~QL~eEGav-Q~f~p~~~~d~IlGAVG~LQFeV~~~RL~~E-Y~ve~ 460 (528)
T COG4108 394 PELFRRVRLKD-PL--------KQKQLKKGLEQLAEEGAV-QVFKPLDGNDLILGAVGQLQFEVVQARLKNE-YNVEA 460 (528)
T ss_pred HHHHHHHHCCC-HH--------HHHHHHHHHHHHHHCCEE-EEECCCCCCCCEEEEECCHHHHHHHHHHHHH-HCCEE
T ss_conf 99999886178-68--------889999999998655756-9960377888658741001379999998765-18707
No 21
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=100.00 E-value=0 Score=449.80 Aligned_cols=194 Identities=66% Similarity=1.098 Sum_probs=187.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHH
Q ss_conf 43149998546898778899999983961423220000038857798709606467999998997999972898754079
Q gi|254780233|r 18 QIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGG 97 (624)
Q Consensus 18 ~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~g 97 (624)
|||||||+||+|||||||+|+||+++|.+.+.+.+.+++||++++||||||||.++.++++|++++|||||||||+||.+
T Consensus 1 nIRNv~iiGHvd~GKTTL~~~Ll~~tg~~~~~~~~~~~~~D~~~~E~ergiTI~~~~~~~~~~~~~~n~IDtPGH~dF~~ 80 (194)
T cd01891 1 DIRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGG 80 (194)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHCCCCEEEEEEEEEECCEEEEEEECCCCHHHHH
T ss_conf 98789999068987999999999974876304652168614758888728763345899998998899998998477777
Q ss_pred HHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHH
Q ss_conf 99999874217899997687886478999999997299789999754366740256899999888622673011042668
Q gi|254780233|r 98 EVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFPIL 177 (624)
Q Consensus 98 EVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~Pv~ 177 (624)
|+.|+++++|+|||||||.+|+|+||+++|++|.+.++|+||||||||+++|+|++|++|+.++|..+++.++++++|++
T Consensus 81 ~~~~~~~~~D~ailVVdA~~Gv~~QT~~~l~~a~~~~~~~iv~iNK~D~~~a~~~~v~~ei~~~~~~~~~~~~~~~~pii 160 (194)
T cd01891 81 EVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFPVL 160 (194)
T ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEE
T ss_conf 89877643446789865378975899999999987299749988564589888999999999999863999333588578
Q ss_pred HHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCCC
Q ss_conf 87886591646742233486413555321024542
Q gi|254780233|r 178 YGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPP 212 (624)
Q Consensus 178 ~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~P 212 (624)
++||++||....... +..+|.+|||+|++++|+|
T Consensus 161 ~~SA~~G~~~d~~~~-~~~~~~~ll~ai~~~iP~P 194 (194)
T cd01891 161 YASAKNGWASLNLED-PSEDLEPLFDTIIEHVPAP 194 (194)
T ss_pred EEECCCCCCCCCCCC-CCCCHHHHHHHHHHHCCCC
T ss_conf 725655335778865-6465999999999658898
No 22
>KOG0468 consensus
Probab=100.00 E-value=0 Score=428.07 Aligned_cols=470 Identities=27% Similarity=0.401 Sum_probs=358.8
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHCCC-CCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEE-----CCEEEEEE
Q ss_conf 68024314999854689877889999998396-1423220000038857798709606467999998-----99799997
Q gi|254780233|r 14 LGYMQIRNIAIIAHVDHGKTTLVDELLKQSGV-FRDNQRVSERVMDCNDLEKERGITILAKVTSIVW-----NDVRINIV 87 (624)
Q Consensus 14 ~~~~~IRNiaIiaHvDhGKTTL~d~LL~~sG~-~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~-----~~~~iNii 87 (624)
-.+..|||++++||..||||+|+|.|..+|+. ++++.+.+-|+.|....|+|||+||++..+++-. +.+.+||+
T Consensus 123 ~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nil 202 (971)
T KOG0468 123 DNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNIL 202 (971)
T ss_pred CCCCEEEEEEEEECCCCCHHHHHHHHCEECCCCCCCCCCCCCCCCCCCHHHHHCCCEEEECCEEEEEECCCCCEEEEEEE
T ss_conf 59640799988611456715787763131346555542356313664245675485676132289985676724335552
Q ss_pred CCCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC-------C--C--CHHHHHH
Q ss_conf 289875407999999874217899997687886478999999997299789999754366-------7--4--0256899
Q gi|254780233|r 88 DTPGHADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRS-------D--A--RADEVIN 156 (624)
Q Consensus 88 DTPGH~DF~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~-------~--a--~~~~v~~ 156 (624)
|||||+||+.|+.++|+++|||+|+|||.||+|-+|++.+++|.+.++|+.||||||||- - | +...+++
T Consensus 203 DTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRLilELkLPP~DAY~KLrHii~ 282 (971)
T KOG0468 203 DTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRLILELKLPPMDAYYKLRHIID 282 (971)
T ss_pred CCCCCCCCHHHHHHHHHHCCEEEEEEECCCCCEEEHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 58875550688888865236379999822570520999999987426767999741678999816983889999878999
Q ss_pred HHHHHHHHCCCCHHHCCHH----HHHHHHHCCEECC----------------------------------------CCCC
Q ss_conf 9998886226730110426----6887886591646----------------------------------------7422
Q gi|254780233|r 157 EVFDLFSALDATDAQLDFP----ILYGSGRFGWMSD----------------------------------------SSDG 192 (624)
Q Consensus 157 ei~dlf~~l~a~de~ld~P----v~~~Sa~~G~~~~----------------------------------------~~~~ 192 (624)
+|.+++.....+|..+-.| |+|+|++-||+-. .++.
T Consensus 283 ~iN~~is~~s~~~~~~~sP~~gNvcFaS~~~g~cFtl~sFak~Y~~~~~~~~~d~Fa~RLWGdvYf~~ktrkF~kk~~~~ 362 (971)
T KOG0468 283 EINNLISTFSKDDNPVVSPILGNVCFASGKLGFCFTLKSFAKLYADAHGHIDVDDFAKRLWGDVYFHSKTRKFVKKPPDG 362 (971)
T ss_pred HHCCHHHHCCCCCCCCCCCCCCCEEEECCCCCEEEEHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 86241221025666412644476344215544166657788888986088515441033310000046652001479887
Q ss_pred C-------------------------------------------CCCCCHHHH---------------HHHHCCCCCCC-
Q ss_conf 3-------------------------------------------348641355---------------53210245422-
Q gi|254780233|r 193 S-------------------------------------------RDQGMVPLL---------------NLIVDHVPPPV- 213 (624)
Q Consensus 193 ~-------------------------------------------~~~gl~~Ll---------------d~Ii~~iP~P~- 213 (624)
. ...+..||| |++++|+|+|.
T Consensus 363 ~~~rsFVeFILePlYKi~sq~igd~~~~l~~~l~e~~v~ls~e~~k~n~rPll~lvc~~ffg~~sgfvd~~v~hi~sP~e 442 (971)
T KOG0468 363 SGSRSFVEFILEPLYKIFSQVIGDEKDSLKGLLAELGVRLSKEAYKLNPRPLLRLVCKSFFGIESGFVDMPVEHIPSPRE 442 (971)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCHHH
T ss_conf 66402345567689999999851033201204666410246777623851799999998615303465755764688233
Q ss_pred -------------------------CCCCHHHCCCCCCCC-CCCCCEEEEEEECCCCCCCCCEEEEECCCCC-----CEE
Q ss_conf -------------------------332000001111013-6777349999960780515988999605785-----012
Q gi|254780233|r 214 -------------------------ISEGEFKMIGTILEK-DPFLGRIVTGRIHSGTIKSNQNIKALSPDGA-----LVE 262 (624)
Q Consensus 214 -------------------------~~e~pl~~~V~~i~~-d~y~Gria~gRV~sGtlk~Gd~V~vl~~~g~-----~~~ 262 (624)
++++|+.+.+++... |+-.--.+++||+||+++.|+.|.++..+.. ...
T Consensus 443 ~a~~K~~hsy~G~~~~~i~~~m~~c~~~~pLm~h~tklyp~dD~~~f~~f~rv~Sg~~~~~q~V~vlgeny~leDEeD~~ 522 (971)
T KOG0468 443 NAARKAEHSYTGTKDSLIYEGMVECNASGPLMVHVTKLYPRDDTVQFHVFGRVYSGQVVTGQDVRVLGENYSLEDEEDMV 522 (971)
T ss_pred HHCCCCCEEECCCCCCHHHHHHHHHCCCCCEEEEEECCEECCCCEEEEEEEEEEECCEEECCEEEEEECCCCCCCCCCCE
T ss_conf 11121100302887525889998517777516874041204775035554245304066155235740136679855101
Q ss_pred ECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC-CCEECCCCCCC---CCCCCC-CCCCCEEEEEECCCCCCCCCC
Q ss_conf 1145530110366534441125455432222332101-22110556521---123366-665421578612686554444
Q gi|254780233|r 263 VGRVSKILAFRGIDRQPIDEAHAGDIVSIAGLVKATV-ADTFCDPSIDE---PLKAQP-IDPPTVTMTFGVNDSPLAGTE 337 (624)
Q Consensus 263 ~~kV~~L~~~~G~~r~~v~ea~AGDIvaIaGl~~~~i-GDTL~~~~~p~---~Lp~i~-i~~Ptis~~f~vn~sP~ag~e 337 (624)
...|++++.+.+.-+.+|..|.||.+|.|-|+++..+ .-||++.+..+ -+++++ +.+|++.++.. |+-..|
T Consensus 523 ~~~v~el~v~~arY~i~V~~~~~G~~VLI~Gidq~i~KtaTi~~~~~ked~yiFrpl~~~t~~VvKiave----P~nPsE 598 (971)
T KOG0468 523 ICEVGELWVVRARYRIPVSRAPAGLWVLIEGVDQSIVKTATIKSLEYKEDVYIFRPLKFNTEPVVKVAVE----PLNPSE 598 (971)
T ss_pred EEEEEEEEEEEEEEEEEECCCCCCCEEEEECCCHHHHHHHHEECCCCCCCEEECCCHHCCCCCEEEEEEC----CCCHHH
T ss_conf 3341004566556788842468875899844656776554100136665304325432177642899834----688466
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEECCHHHHHHHHHHHHHC--CEEEECCCCEEEEEEE--------
Q ss_conf 321017889999999730283799998599975999963645688887412334--8033015744899820--------
Q gi|254780233|r 338 GDKVTSRMIRDRLFKEAEGNIALKIEESSSKDAFFVSGRGELQLAVLIETMRRE--GFELAVSRPRVVIKKE-------- 407 (624)
Q Consensus 338 g~~~ts~~l~~rL~ke~~~dvsL~ve~~~~~~~~~v~GrGeLHL~IliE~mRRE--G~E~~vs~P~V~~k~~-------- 407 (624)
-.++-+.|.|....=|.+.. .-+++++..+.|-|||-|+-++-.||.- -.|.-|+-|.|.|-+.
T Consensus 599 -----LPKmldgLrKinKsYPl~~t-kVEESGEHvilGtGElYmDcvlyDLR~~yseieikvaDPvv~F~Et~vetssik 672 (971)
T KOG0468 599 -----LPKMLDGLRKINKSYPLVIT-KVEESGEHVILGTGELYMDCVLYDLRKSYSEIEIKVADPVVRFCETVVETSSIK 672 (971)
T ss_pred -----HHHHHHHHHHHCCCCCCEEE-EHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHCEEECCCEEEEEEEEECCCCHH
T ss_conf -----26788998753112771787-622267458852761127889999998776503332385268887652254112
Q ss_pred ----------------------------C--------------------------------------C------------
Q ss_conf ----------------------------8--------------------------------------8------------
Q gi|254780233|r 408 ----------------------------G--------------------------------------D------------ 409 (624)
Q Consensus 408 ----------------------------d--------------------------------------g------------ 409 (624)
+ |
T Consensus 673 cfaetpnkknkItmiaEPlek~l~eDiEng~v~I~wn~krl~effqt~YdWDlLAaRsiWaFgpd~~GpNiL~dDTLp~e 752 (971)
T KOG0468 673 CFAETPNKKNKITMIAEPLEKGLAEDIENGVVVIDWNRKRLGEFFQTKYDWDLLAARSIWAFGPDYTGPNILLDDTLPTE 752 (971)
T ss_pred HHCCCCCCCCCEEEEECHHHHHHHHHHHCCEEEECCCHHHHHHHHHCCCCHHHHHHCCEECCCCCCCCCCEEECCCCCCH
T ss_conf 32048886674255501000005678653807733666666566510366013420431223787789733205767201
Q ss_pred ------------------------------------------------------------------------EECCEEEE
Q ss_conf ------------------------------------------------------------------------26041688
Q gi|254780233|r 410 ------------------------------------------------------------------------SLLEPIEE 417 (624)
Q Consensus 410 ------------------------------------------------------------------------~~lEPie~ 417 (624)
.+|||+..
T Consensus 753 vdk~ll~~vkesivQGFqW~trEGPLc~EpIr~VkfKlld~~ia~e~l~rgggQiIPtaRrv~YsafL~AtPrLmEP~Y~ 832 (971)
T KOG0468 753 VDKNLLSSVKESIVQGFQWGTREGPLCDEPIRNVKFKLLDAVIAPEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPVYL 832 (971)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHCCCEEE
T ss_conf 14888888899999988887504876677322306898511047642014787001678888888787525353185589
Q ss_pred EEEECCHHHHHHHHHHHHHCCCEECCCCCC--CCCEEEEEEEECHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCC
Q ss_conf 887313233107899887435401042136--89849999996133565688998853276167888870530135787
Q gi|254780233|r 418 VVIDVDEEHSGAVVQKMTLHKSEMIELRPS--GTGRVRLVFLSPTRGLIGYQSQLMTDTRGTAIMNRLFHSYQPHKGEI 494 (624)
Q Consensus 418 v~I~vp~ey~G~Vi~~l~~RrG~i~~m~~~--~~g~~~l~~~vP~r~l~g~~~~l~s~T~G~g~~~~~f~~Y~p~~g~i 494 (624)
|+|..|.+.+-.|-+.|++|||++..-.+. +.-++ +.+.+|.-+-+||.++||..|+|+|...+.|+||++++|+-
T Consensus 833 VEi~apad~v~~Vy~vl~rRRGhV~~d~p~pGSPly~-v~a~iPvieSfGFETDLR~hTqGqa~C~~vF~HW~~VPGDp 910 (971)
T KOG0468 833 VEITAPADCVPAVYTVLSRRRGHVTQDIPVPGSPLYT-VKAYLPVIESFGFETDLRVHTQGQAFCLSVFDHWRIVPGDP 910 (971)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEECCCCCCCCHHH-EEEECCCCCCCCCCCCEEEECCCHHHHHHHHHHCCCCCCCC
T ss_conf 9974364238899999986257323348889984455-04630132236752002663064257877656313179985
No 23
>KOG0467 consensus
Probab=100.00 E-value=0 Score=424.06 Aligned_cols=467 Identities=27% Similarity=0.421 Sum_probs=344.2
Q ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCC
Q ss_conf 46802431499985468987788999999839614232200000388577987096064679999989979999728987
Q gi|254780233|r 13 RLGYMQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGH 92 (624)
Q Consensus 13 ~~~~~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH 92 (624)
.+..++||||+|+||||||||||+|.|+...|.++..-...=|+||+.+.|+-||||.+|...|...++|.||+||+|||
T Consensus 3 ~~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspgh 82 (887)
T KOG0467 3 QKGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGH 82 (887)
T ss_pred CCCCCCEEEEEEEEEECCCCCCHHHHHHHHCCEECHHHCCCEEECCCCCHHHHHCEEEECCCCCCCCCCEEEEEECCCCC
T ss_conf 77877505899999964885325777875066741533560662104625666162443131110137658998558986
Q ss_pred CCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC----CCCHHHHH-------HHHHHH
Q ss_conf 5407999999874217899997687886478999999997299789999754366----74025689-------999988
Q gi|254780233|r 93 ADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRS----DARADEVI-------NEVFDL 161 (624)
Q Consensus 93 ~DF~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~----~a~~~~v~-------~ei~dl 161 (624)
.||++||..+.+.+|||+++||+.||+.+||..|+|+|+..++++|.+||||||- ...|.|.+ +++.-+
T Consensus 83 vdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidrl~~el~lsp~ea~~~l~r~i~~vn~~ 162 (887)
T KOG0467 83 VDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDRLITELKLSPQEAYEHLLRVIEQVNGV 162 (887)
T ss_pred CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 45065532666504771899960025455389999999971674599973166678887169699999999999986668
Q ss_pred H-------HHCCCCHHHCC-----H-----HHHHHHHHCCEECCCC---------------------------C------
Q ss_conf 8-------62267301104-----2-----6688788659164674---------------------------2------
Q gi|254780233|r 162 F-------SALDATDAQLD-----F-----PILYGSGRFGWMSDSS---------------------------D------ 191 (624)
Q Consensus 162 f-------~~l~a~de~ld-----~-----Pv~~~Sa~~G~~~~~~---------------------------~------ 191 (624)
. .+++.+.++++ | -|+|+||..||+-... +
T Consensus 163 i~~~~~~~v~l~~~~~~i~d~~~~F~p~kgNVif~~A~~~~~f~~~~fak~~~~kl~~k~~al~k~lwgd~y~~~ktk~I 242 (887)
T KOG0467 163 IGQFLGGIVELDDNWENIEDEEITFGPEDGNVIFASALDGWGFGIEQFAKFYAKKLGLKDAALLKFLWGDRYIDPKTKRI 242 (887)
T ss_pred HHHHHCCHHHCCCHHHHHHHCCEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCEEECCHHHHH
T ss_conf 88764111110210322101000436778848998710156201999999998744734665213210452433204666
Q ss_pred --CCCCCC--------------------------------------------CHHHHHHH---------------HCCCC
Q ss_conf --233486--------------------------------------------41355532---------------10245
Q gi|254780233|r 192 --GSRDQG--------------------------------------------MVPLLNLI---------------VDHVP 210 (624)
Q Consensus 192 --~~~~~g--------------------------------------------l~~Lld~I---------------i~~iP 210 (624)
+..-.| ...||++| +.++|
T Consensus 243 ~~~~~~~grkplf~~~vle~lw~iy~~~~~~~d~~~~~ki~k~l~i~~l~r~~~~ll~~im~~wLPls~avll~a~~~lp 322 (887)
T KOG0467 243 CEGKKLKGRKPLFVQFVLENLWRIYELALKSRDKEKLEKIAKSLNIKLLPRDLRNLLDAIMSTWLPLSDAVLLTVVYKLP 322 (887)
T ss_pred HCCCCCCCCCCCCCEEEHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCC
T ss_conf 43567666777631333005789999874320288899876430212135899999999997526321022999988559
Q ss_pred CCCC-----------------------------CCCHHHCCCCCCCC-----CCCCCEEEEEEECCCCCCCCCEEEEECC
Q ss_conf 4223-----------------------------32000001111013-----6777349999960780515988999605
Q gi|254780233|r 211 PPVI-----------------------------SEGEFKMIGTILEK-----DPFLGRIVTGRIHSGTIKSNQNIKALSP 256 (624)
Q Consensus 211 ~P~~-----------------------------~e~pl~~~V~~i~~-----d~y~Gria~gRV~sGtlk~Gd~V~vl~~ 256 (624)
.|.. +++|.-..|++.-+ +|-.--+++.||+|||++.||.+++.++
T Consensus 323 ~pl~~~~~r~~rl~~s~~~~~~~~~~~~v~~~~~~~pviv~Vskm~~~~~k~lp~~~l~~~ari~sgTlr~g~~v~v~~p 402 (887)
T KOG0467 323 DPIRSQAERGLRLLSSSDHRSDPPLTKAVKSCSKESPVLVFVSKMLATPLKYLPQSRLLAFARIFSGTLRVGQVVYVLGP 402 (887)
T ss_pred CHHHHHHHHHCEECCCCCCCCCHHHHHHHHCCCCCCCEEEEEEEEECCCHHHCCHHHHEEEEEECCCCEEECCEEEECCC
T ss_conf 77999987525012684111372766541137998847999972204623217230211563501484462117642378
Q ss_pred CCCC---EEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCC-CCCCCCCEEEEEECCCCC
Q ss_conf 7850---121145530110366534441125455432222332101221105565211233-666654215786126865
Q gi|254780233|r 257 DGAL---VEVGRVSKILAFRGIDRQPIDEAHAGDIVSIAGLVKATVADTFCDPSIDEPLKA-QPIDPPTVTMTFGVNDSP 332 (624)
Q Consensus 257 ~g~~---~~~~kV~~L~~~~G~~r~~v~ea~AGDIvaIaGl~~~~iGDTL~~~~~p~~Lp~-i~i~~Ptis~~f~vn~sP 332 (624)
++.. ....+|.++|.++|.+-++.++..+|++++|.|-+..--.-|+|+...-.|+-. ..--.|.+.|++.+. +|
T Consensus 403 d~~~~e~i~~~~ie~lyl~mgqelv~~d~v~~gnv~~I~g~~~vlks~TL~s~~~~~p~~~~~f~~tp~vrvaiep~-~p 481 (887)
T KOG0467 403 DPLSPEHITECTVESLYLFMGQELVPLDEVPSGNVVAIGGAGIVLKSATLCSKVPCGPNLVVNFQITPIVRVAIEPD-DP 481 (887)
T ss_pred CCCCCCEEEEEEEHHHHHHHCCCCEEEECCCCCCEEEECCCCEEECCCEECCCCCCCCEEEEEEEEEEEEEEEEECC-CH
T ss_conf 99985404565405567750455223102477867986166447515411036887650456664024789996318-86
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEECCHHHHHHHHHHHHH-CCEEEECCCCEEEEEEEC---
Q ss_conf 5444432101788999999973028379999859997599996364568888741233-480330157448998208---
Q gi|254780233|r 333 LAGTEGDKVTSRMIRDRLFKEAEGNIALKIEESSSKDAFFVSGRGELQLAVLIETMRR-EGFELAVSRPRVVIKKEG--- 408 (624)
Q Consensus 333 ~ag~eg~~~ts~~l~~rL~ke~~~dvsL~ve~~~~~~~~~v~GrGeLHL~IliE~mRR-EG~E~~vs~P~V~~k~~d--- 408 (624)
.+- .++.+.|.-+..-||++++-- +..++..+.--||.||+=.+..++- +++++.+|.|.|.|++.-
T Consensus 482 ---~em-----~~L~~glkll~~adp~v~i~v-~~~gEhvl~~aGevhlerc~kDL~efa~i~i~vSeP~vpfrET~~e~ 552 (887)
T KOG0467 482 ---DEM-----DKLVEGLKLLNQADPFVKIRV-EENGEHVLVTAGEVHLERCLKDLKEFAKIEISVSEPLVPFRETIIED 552 (887)
T ss_pred ---HHH-----HHHHHHHHHHCCCCHHHHHHH-HHCCCEEEEECCHHHHHHHHHHHHHHHCEEEEECCCCCCHHHHCCCC
T ss_conf ---776-----889988776605640667887-62541034430177799899887655306887248763156540453
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q gi|254780233|r 409 -------------------------------------------------------------------------------- 408 (624)
Q Consensus 409 -------------------------------------------------------------------------------- 408 (624)
T Consensus 553 s~l~~~~~I~~~~~~~~~~~~ki~~~~~pl~~~~v~~l~~~~~ti~~i~~~~~~~~~i~e~~k~~~~e~ls~~~s~~~~~ 632 (887)
T KOG0467 553 SDLLANLSIGQETKCLPRGQLKIKLRVVPLSGAVVDLLDKNSSLISNILRGESRQVPIDESQKGSFEENLSLLISLERLY 632 (887)
T ss_pred CHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCEECCCCCCCHHCCCHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 01002332273211030123367766404665222124332110011012544443011112453002323799998876
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q gi|254780233|r 409 -------------------------------------------------------------------------------- 408 (624)
Q Consensus 409 -------------------------------------------------------------------------------- 408 (624)
T Consensus 633 ~~ek~~e~~~~~~~~~~Afgp~r~g~nilf~~~~~~~~s~~~~t~~~~~l~~~ivsgfql~~~sGPlc~Ep~~g~~~~~e 712 (887)
T KOG0467 633 EFEKPREKLGSFKDQIIAFGPRRVGPNILFNKDSKLYRSVRRGTPFVARLSESIVSGFQLATSSGPLCNEPMQGICFVLE 712 (887)
T ss_pred HCCCCHHHHHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEE
T ss_conf 41662777778875100114133588601320003125454055578789998766675665068632467420799964
Q ss_pred --------------C-------------------EECCEEEEEEEECCHHHHHHHHHHHHHCCCEECC--CCCCCCCEEE
Q ss_conf --------------8-------------------2604168888731323310789988743540104--2136898499
Q gi|254780233|r 409 --------------D-------------------SLLEPIEEVVIDVDEEHSGAVVQKMTLHKSEMIE--LRPSGTGRVR 453 (624)
Q Consensus 409 --------------g-------------------~~lEPie~v~I~vp~ey~G~Vi~~l~~RrG~i~~--m~~~~~g~~~ 453 (624)
| .++.|++.+.|.+-.|+.|.|-.-|++|+|+++. |.. |.+.-.
T Consensus 713 s~~~e~~e~~~~~~GQviTa~Kescr~Afl~~~pRl~~aMYsC~I~t~~e~LGkvYAVlskR~gkVLsEem~E-gT~~F~ 791 (887)
T KOG0467 713 SGSAEEMESDGNIGGQLITAVKDSCRAAFLCWSPRIMAAMYSCDIQTASEVLGKVYAVLSKRHGKVLSEEMKE-GTGFFI 791 (887)
T ss_pred CCCCCCCCCCCCCCCEEHHHHHHHHHHHHHCCCHHHHHHHEEEEEEEHHHHHHHHHHHHHHHCCHHHHHHHHC-CCCCEE
T ss_conf 0575322245775741089999999999862787776665643453238775567854422013210156637-887579
Q ss_pred EEEEECHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC
Q ss_conf 9999613356568899885327616788887053013
Q gi|254780233|r 454 LVFLSPTRGLIGYQSQLMTDTRGTAIMNRLFHSYQPH 490 (624)
Q Consensus 454 l~~~vP~r~l~g~~~~l~s~T~G~g~~~~~f~~Y~p~ 490 (624)
+++.+|.-+-+||..++|--|+|.|+-...|+||+-.
T Consensus 792 V~aliPVvESFgFadeiRK~TSG~A~pQLvFShwEvI 828 (887)
T KOG0467 792 VTALIPVVESFGFADEIRKGTSGAASPQLVFSHWEVI 828 (887)
T ss_pred EEEEEEEECCCCHHHHHHHCCCCCCCHHHHCCCCEEE
T ss_conf 9997401215557999861056554633000341783
No 24
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=100.00 E-value=0 Score=411.95 Aligned_cols=142 Identities=33% Similarity=0.507 Sum_probs=138.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCC--EECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHH
Q ss_conf 4999854689877889999998396142322000--00388577987096064679999989979999728987540799
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSE--RVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGE 98 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~--~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gE 98 (624)
||||+||+|+|||||+|+|||.+|++++.|+|++ ++||++++||+|||||.+..++++|++++|||||||||.||++|
T Consensus 1 Ni~iigH~~aGKTtL~E~lL~~~g~i~~~G~V~~g~t~~D~~~~E~~RgiSi~s~~~~~~w~~~~inliDTPG~~DF~~e 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEECCEEEEEECCEEEEEEECCCCHHHHHH
T ss_conf 98999089999899999999966996657654589735778788986796751355788889979999869897579999
Q ss_pred HHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 9999874217899997687886478999999997299789999754366740256899999888
Q gi|254780233|r 99 VERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLF 162 (624)
Q Consensus 99 Ver~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf 162 (624)
|+|+|+++|+||+||||++||++||+.+|+.|.++++|+|+|||||||++|+|+++++++++.|
T Consensus 81 ~~~aL~v~D~Av~Vida~~GVe~~T~~~w~~~~~~~iP~i~fINKmDr~~ad~~~~l~~i~~~l 144 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERADFDKTLAALQEAF 144 (268)
T ss_pred HHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 9998404783999941875476879999999998599989999787878996477999999986
No 25
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=100.00 E-value=0 Score=411.28 Aligned_cols=145 Identities=37% Similarity=0.576 Sum_probs=140.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCC----C--CEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCC
Q ss_conf 43149998546898778899999983961423220----0--00038857798709606467999998997999972898
Q gi|254780233|r 18 QIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRV----S--ERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPG 91 (624)
Q Consensus 18 ~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v----~--~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPG 91 (624)
++|||||+||+|+|||||+|+|||.||++++.|+| + .+++|++++|++|||||.++.++++|++++||||||||
T Consensus 1 ~~Rniai~gH~gaGKTtL~EalL~~~G~i~r~G~V~~~~~~g~t~~D~~~eE~~R~iSi~~~~~~~~w~~~kinliDTPG 80 (267)
T cd04169 1 RRRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPG 80 (267)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHCCCEEECCEEEEEECCEEEEEEECCC
T ss_conf 90179998479999899999999866863338546303688860468879998659448636378878998999997969
Q ss_pred CCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 75407999999874217899997687886478999999997299789999754366740256899999888
Q gi|254780233|r 92 HADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLF 162 (624)
Q Consensus 92 H~DF~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf 162 (624)
|.||.||++++|+++|+||+||||.+||++||+++|+.|.++++|+++|||||||++|+|+++++++.+.|
T Consensus 81 ~~DF~~e~~~al~v~D~AviVv~a~~GVe~~T~~~w~~a~~~~iP~iifINKmDr~~adf~~~l~~i~~~l 151 (267)
T cd04169 81 HEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGRDPLELLDEIEEEL 151 (267)
T ss_pred CHHHHHHHHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 77899999999988645479952566653558999999997299979998534567898789999999986
No 26
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=100.00 E-value=0 Score=405.21 Aligned_cols=190 Identities=39% Similarity=0.667 Sum_probs=161.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEE----------CCEEEEEECC
Q ss_conf 149998546898778899999983961423220000038857798709606467999998----------9979999728
Q gi|254780233|r 20 RNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVW----------NDVRINIVDT 89 (624)
Q Consensus 20 RNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~----------~~~~iNiiDT 89 (624)
||||||||+|||||||+|+||+++|.+++......|+||++++||||||||+|+.+++.| +++.||||||
T Consensus 1 RNi~iigHvdhGKTTL~D~Ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTIks~~isl~~~~~~~~~~~~~~~~inlIDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCHHCCCCEEECCCHHHHHHCCCEEEEEEEEEEEEECCCCCCCCCCEEEEEEEC
T ss_conf 96999866887799999999998598412106634651424334205415862268999860344345688638999728
Q ss_pred CCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC----CCCHHH-------HHHHH
Q ss_conf 9875407999999874217899997687886478999999997299789999754366----740256-------89999
Q gi|254780233|r 90 PGHADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRS----DARADE-------VINEV 158 (624)
Q Consensus 90 PGH~DF~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~----~a~~~~-------v~~ei 158 (624)
|||+||++||+|+++++|||||||||.+|+|+||+++|++|++.++|+|+|||||||. ..+|++ +++++
T Consensus 81 PGH~dF~~ev~~al~~~DgailVVDa~eGv~~qT~~vl~~a~~~~l~~il~iNKiDRli~el~l~p~day~~l~~iie~v 160 (222)
T cd01885 81 PGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRLILELKLSPEEAYQRLARIIEQV 160 (222)
T ss_pred CCHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHCCCCHHHHHHHHHHHHHHH
T ss_conf 85698999999999856817996104578577899999999985999799998903650011799899999999999999
Q ss_pred HHHHHHCCC------CHHHCCH-H----HHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCCC
Q ss_conf 988862267------3011042-6----6887886591646742233486413555321024542
Q gi|254780233|r 159 FDLFSALDA------TDAQLDF-P----ILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPP 212 (624)
Q Consensus 159 ~dlf~~l~a------~de~ld~-P----v~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~P 212 (624)
..++..+.. .+++..| | |+|+||+.||+.... ....+.+|||+|++++|+|
T Consensus 161 N~~i~~~~~~~~~~~~~~~~~~~p~~gnV~f~Sa~~Gw~f~l~---~fa~ly~ll~~iv~~iP~P 222 (222)
T cd01885 161 NAIIGTYADEEFKEKDDEKWYFSPQKGNVAFGSALHGWGFTII---KFARIYAVLEMVVKHLPSP 222 (222)
T ss_pred HHHHHHHCHHHHCCCCCCCEEECCCCCCEEEEECCCCCCCCCC---CHHHHHHHHHHHHHHCCCC
T ss_conf 9999872304330355321020777783899983237712675---4121899999999628998
No 27
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=100.00 E-value=0 Score=404.86 Aligned_cols=190 Identities=34% Similarity=0.529 Sum_probs=169.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCC---CEECCCCHHHHHCCCEEEEEEEEEEECC-----EEEEEECCCC
Q ss_conf 1499985468987788999999839614232200---0003885779870960646799999899-----7999972898
Q gi|254780233|r 20 RNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVS---ERVMDCNDLEKERGITILAKVTSIVWND-----VRINIVDTPG 91 (624)
Q Consensus 20 RNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~---~~vmD~~~~EreRGITI~a~~~~~~~~~-----~~iNiiDTPG 91 (624)
|||||+||+|||||||+|+||+++|.....+... .|+||++++||||||||.++.+++.|.+ +.||||||||
T Consensus 1 RNvaiigHvdhGKTTL~d~Ll~~t~~~~~~~~~~~~~~~~~D~~~~E~eRgiTI~s~~~sl~~~~~~~k~~~inlIDTPG 80 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCEECCEEEEEEECCCCCEEEEEEEECCC
T ss_conf 95999827898989999999997344555404442113575164665420355861459999825667505787788987
Q ss_pred CCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC-------CCC----CHHHHHHHHHH
Q ss_conf 7540799999987421789999768788647899999999729978999975436-------674----02568999998
Q gi|254780233|r 92 HADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDR-------SDA----RADEVINEVFD 160 (624)
Q Consensus 92 H~DF~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr-------~~a----~~~~v~~ei~d 160 (624)
|+||++||.|+++++|||+|||||.+|||+||+++|++|++.++|+|+||||||| |.+ ++.++++++..
T Consensus 81 H~dF~~ev~~al~~~DgailVVDa~eGv~~qT~~~l~~a~~~~l~~ilviNKiDRLi~el~l~p~day~~~~~ii~~vn~ 160 (213)
T cd04167 81 HVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRLILELKLPPNDAYFKLRHIIDEVNN 160 (213)
T ss_pred CHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 24179999988863776799998788875779999999998699989999882343144069989999989999999999
Q ss_pred HHHHCCCCHHHCCHH----HHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCCC
Q ss_conf 886226730110426----6887886591646742233486413555321024542
Q gi|254780233|r 161 LFSALDATDAQLDFP----ILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPP 212 (624)
Q Consensus 161 lf~~l~a~de~ld~P----v~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~P 212 (624)
++.++.++++++.+| |+|+||+.||+-... .-..+.+|+|+|++++|+|
T Consensus 161 ~i~~~~~~~~~~~~p~~~nV~f~Sa~~gw~ftl~---~fa~~y~l~d~i~~~ip~P 213 (213)
T cd04167 161 IIASFSTTLSFLFSPENGNVCFASSKFGFCFTLE---SFAKKYGLVDSIVSNIPSP 213 (213)
T ss_pred HHHHHCCCCCCEECCCCCCEEEEEECCCEEECCC---CHHHHHHHHHHHHHHCCCC
T ss_conf 9997078735165688796999970005212362---3211689999999638898
No 28
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=100.00 E-value=0 Score=401.14 Aligned_cols=142 Identities=42% Similarity=0.600 Sum_probs=138.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCC--EECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHH
Q ss_conf 4999854689877889999998396142322000--00388577987096064679999989979999728987540799
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSE--RVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGE 98 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~--~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gE 98 (624)
||||+||+|+|||||+|+|||.||++++.|++++ ++||++++|++|||||.++.++++|++++|||||||||.||+||
T Consensus 1 Niai~gH~gaGKTtL~EalL~~ag~i~r~G~v~~g~tv~D~~~eE~~R~isi~~~~~~~~w~~~~inliDTPG~~DF~~e 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCHHHHHCCCEEECCEEEEEECCEEEEEEECCCCHHHHHH
T ss_conf 98999689999889999999866873558155389755668488987687073366899989989999869696788999
Q ss_pred HHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 9999874217899997687886478999999997299789999754366740256899999888
Q gi|254780233|r 99 VERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLF 162 (624)
Q Consensus 99 Ver~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf 162 (624)
++|+|+++|+||+||||.+||++||+.+|+.|.++++|+|+|||||||++|+|+++++++++.|
T Consensus 81 ~~~aL~~~D~AviVv~a~~GVe~~T~~~w~~~~~~~lP~i~fINKmDre~ad~~~~l~~i~~~l 144 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGADFFRVVEQIREKL 144 (270)
T ss_pred HHHHHHHHCEEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf 9999877555999984676442636999988998499989999887877887166899999985
No 29
>TIGR00503 prfC peptide chain release factor 3; InterPro: IPR004548 Peptide chain release factor 3 increases the formation of ribosomal termination complexes and stimulates activity of RF-1 and RF-2. It binds to guanine nucleotides and has a strong preference for UGA stop codons. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis sp. (strain PCC 6803), and in Staphylococcus aureus.; GO: 0005525 GTP binding, 0016149 translation release factor activity codon specific, 0006415 translational termination, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=401.91 Aligned_cols=353 Identities=25% Similarity=0.391 Sum_probs=282.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCC------EECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCC
Q ss_conf 24314999854689877889999998396142322000------003885779870960646799999899799997289
Q gi|254780233|r 17 MQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSE------RVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTP 90 (624)
Q Consensus 17 ~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~------~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTP 90 (624)
.+=||+|||.|-|+|||||+|.+|-+.++|...|.|.. .-.|+|+.|+.|||+|.+....|.|+++.+||+|||
T Consensus 9 ~~RR~FAIISHPDAGKTT~TEK~LLyG~AIQ~AG~VK~r~S~~~A~SDWM~ME~QRGISIT~~VlQF~Y~~~l~NLLDTP 88 (530)
T TIGR00503 9 DKRRTFAIISHPDAGKTTLTEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVLQFPYRDCLVNLLDTP 88 (530)
T ss_pred HHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEEEEECCCCCEEECCCCC
T ss_conf 50255436616888742467888874256652244122001221221378875058814441277414577456203685
Q ss_pred CCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHH--------
Q ss_conf 875407999999874217899997687886478999999997299789999754366740256899999888--------
Q gi|254780233|r 91 GHADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLF-------- 162 (624)
Q Consensus 91 GH~DF~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf-------- 162 (624)
||.||+-+..|.|.++|.||+||||+.|++.||+..+.-+.-..+|++-||||+||+--+|-|.+|||..-+
T Consensus 89 GH~DFSEDTYRTL~A~D~~~M~IDaAKG~E~~T~KL~EV~RLR~~PI~TF~NKLDR~~~~P~ELlDEvE~~L~~~~~~~~ 168 (530)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDLPILTFINKLDRDIRDPLELLDEVENELKINCAPIT 168 (530)
T ss_pred CCCCCCCHHHHHHHHHHHHEEEHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf 88876404679999851230011112561234244542010004744335232065435537888888877064113430
Q ss_pred -----------------------HHCC-------------CCHHH----------------C--------C---------
Q ss_conf -----------------------6226-------------73011----------------0--------4---------
Q gi|254780233|r 163 -----------------------SALD-------------ATDAQ----------------L--------D--------- 173 (624)
Q Consensus 163 -----------------------~~l~-------------a~de~----------------l--------d--------- 173 (624)
...| .++-. | |
T Consensus 169 ~PIG~G~~F~GVY~~~~~~~yLy~r~G~~~~~~~~~~~~~L~~P~L~~~~G~D~~~~l~dELELv~~A~~EFd~~~~~~G 248 (530)
T TIGR00503 169 YPIGCGKLFKGVYHLLKDEIYLYQRSGTGGTIKAVRVVKGLNNPALDSAVGSDLAQQLRDELELVEGASNEFDLAAFLGG 248 (530)
T ss_pred CCCCCCCCCHHHHHHHCCEEEEEECCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 56578843113554301406676305888416677776326880156776578999998899999863024568998538
Q ss_pred --HHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCCCCCC----------CCHHHCCCCCCCCC---CCCCEEEEE
Q ss_conf --266887886591646742233486413555321024542233----------20000011110136---777349999
Q gi|254780233|r 174 --FPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPPVIS----------EGEFKMIGTILEKD---PFLGRIVTG 238 (624)
Q Consensus 174 --~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~P~~~----------e~pl~~~V~~i~~d---~y~Gria~g 238 (624)
-||.|+||+.+ -|++.+||++++|-|.|... +..|..+|||+.++ .|+-||||.
T Consensus 249 E~TPVFFG~Al~N-----------FGV~~~L~~l~~~A~~P~~~~~~~~TvE~~~e~FsGFVFK~QANMDPKHRDRvAFl 317 (530)
T TIGR00503 249 ELTPVFFGTALGN-----------FGVDHFLDGLLQYAPKPEARQSDTRTVEPTEEKFSGFVFKLQANMDPKHRDRVAFL 317 (530)
T ss_pred CCCCEECCCCHHH-----------HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEE
T ss_conf 6463111000101-----------00899999999860788876567754023433544228886337988633505777
Q ss_pred EECCCCCCCCCEEEEECCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCC
Q ss_conf 96078051598899960578501211455301103665344411254554322223321012211055652112336666
Q gi|254780233|r 239 RIHSGTIKSNQNIKALSPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSIAGLVKATVADTFCDPSIDEPLKAQPID 318 (624)
Q Consensus 239 RV~sGtlk~Gd~V~vl~~~g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIvaIaGl~~~~iGDTL~~~~~p~~Lp~i~i~ 318 (624)
||.||+..+|+.|...+ ..+..+|+.-..+.+.+|..|++|.||||+.+..--.+.||||++..+. ..+|+|+--
T Consensus 318 RV~SGKyEK~M~~k~~R----~gK~V~~S~~~~~~A~~R~~v~~AYaGD~iGL~N~G~~~IGDT~~~GE~-~~f~gIP~F 392 (530)
T TIGR00503 318 RVVSGKYEKGMKLKHVR----TGKDVVLSDALTLMAGDREHVEEAYAGDIIGLHNHGTIQIGDTFTQGEK-LKFTGIPNF 392 (530)
T ss_pred EEECCEEECCCEECCCC----CCCEEEECCHHHHHHCCHHHHHHCCCCCEEEECCCCCEEECCCCCCCCE-EEECCCCCC
T ss_conf 76413463475661421----3553686323565440212231127776531068842674772024865-663877886
Q ss_pred CCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEE-CCC-CCEEEEEECCHHHHHHHHHHHHHCCEEEE
Q ss_conf 5421578612686554444321017889999999730283799998-599-97599996364568888741233480330
Q gi|254780233|r 319 PPTVTMTFGVNDSPLAGTEGDKVTSRMIRDRLFKEAEGNIALKIEE-SSS-KDAFFVSGRGELQLAVLIETMRREGFELA 396 (624)
Q Consensus 319 ~Ptis~~f~vn~sP~ag~eg~~~ts~~l~~rL~ke~~~dvsL~ve~-~~~-~~~~~v~GrGeLHL~IliE~mRREG~E~~ 396 (624)
-|-+.-.+...| |+ ...++...|..+.|+- +.+|-+ ..+ ..-.+|+.-|.||.+|++.||+.| |.+.
T Consensus 393 ~PELF~~~R~~D-P~--------~~K~l~KG~~~L~EEG-AVQv~~~l~~~krD~I~~AVG~LQF~VV~~RL~~E-Y~VE 461 (530)
T TIGR00503 393 APELFRRLRLKD-PL--------KQKQLLKGLVQLSEEG-AVQVLRPLDNNKRDLIVGAVGVLQFDVVVYRLKEE-YNVE 461 (530)
T ss_pred CHHHHHHHHCCC-CH--------HHHHHHCCCHHCCCCC-HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCC-CCEE
T ss_conf 678999862138-34--------5566550410002264-32323113214776055420114688998873001-3403
No 30
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=100.00 E-value=0 Score=392.81 Aligned_cols=180 Identities=40% Similarity=0.650 Sum_probs=165.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCC--EECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHH
Q ss_conf 4999854689877889999998396142322000--00388577987096064679999989979999728987540799
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSE--RVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGE 98 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~--~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gE 98 (624)
||||+||+|||||||+|+|||.||++++.|++++ +++|++++||+|||||.+..++++|++++|||||||||.||.+|
T Consensus 1 Niai~gH~~~GKTtL~e~lL~~~g~i~r~G~v~~g~t~~D~~~eE~~r~isi~~~~~~~~~~~~~~n~iDtPG~~dF~~e 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCHHHHCCCEECCCCCCCCHHHHHHHCCEEEEEEEEEEECCEEEEEEECCCCHHHHHH
T ss_conf 98999389989999999999965712226633068303785499898487031058999989987999889884656668
Q ss_pred HHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHH---------------
Q ss_conf 99998742178999976878864789999999972997899997543667402568999998886---------------
Q gi|254780233|r 99 VERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLFS--------------- 163 (624)
Q Consensus 99 Ver~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~--------------- 163 (624)
++++|+++|+||+||||.+|+++||+.+|+.|.++++|+++|||||||++|+|+++++++.+.|.
T Consensus 81 ~~~al~~~D~av~Vv~a~~Gv~~~t~~~~~~~~~~~~P~iifiNKmDre~adf~~~l~~i~~~l~~~~~p~~~p~~~~~~ 160 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVGLAPNI 160 (237)
T ss_pred HHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCC
T ss_conf 98897634816999965888223449999999985998599862445789999999999999978974767777555664
Q ss_pred ------------HCC-CCHHHCC--------------------------HHHHHHHHHCCEECCCCCCCCCCCCHHHHHH
Q ss_conf ------------226-7301104--------------------------2668878865916467422334864135553
Q gi|254780233|r 164 ------------ALD-ATDAQLD--------------------------FPILYGSGRFGWMSDSSDGSRDQGMVPLLNL 204 (624)
Q Consensus 164 ------------~l~-a~de~ld--------------------------~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~ 204 (624)
.+. .+|+.++ +||+++||.++ .|+.+|||+
T Consensus 161 ~~~~~~~~~liE~vae~DD~LlEkyLe~~elt~eel~~~L~~~~~~g~i~PV~~GSA~~n-----------~GV~~LLd~ 229 (237)
T cd04168 161 CETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKG-----------IGIEELLEG 229 (237)
T ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCC-----------CCHHHHHHH
T ss_conf 445441088999876469999998857898678899999999997492988996789989-----------599999999
Q ss_pred HHCCCCC
Q ss_conf 2102454
Q gi|254780233|r 205 IVDHVPP 211 (624)
Q Consensus 205 Ii~~iP~ 211 (624)
|++++|+
T Consensus 230 i~~~~PS 236 (237)
T cd04168 230 ITKLFPT 236 (237)
T ss_pred HHHHCCC
T ss_conf 9987789
No 31
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=100.00 E-value=0 Score=381.50 Aligned_cols=190 Identities=30% Similarity=0.368 Sum_probs=171.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHH
Q ss_conf 14999854689877889999998396142322000003885779870960646799999899799997289875407999
Q gi|254780233|r 20 RNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEV 99 (624)
Q Consensus 20 RNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEV 99 (624)
.||||+||||||||||+++|++..+............||++++||||||||.++.+.++|+++++|+||||||.||..++
T Consensus 3 ~Ni~iiGHVDhGKTTL~~~l~~~~~~~~~~~~~~~~~~D~~~~EreRGiTI~~~~~~~~~~~~~~~~IDtPGH~dF~~~~ 82 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKNM 82 (195)
T ss_pred EEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCHHCCCCHHHHCCCCCCCCEEEEEECCCEEEEECCCCCHHHHHHHH
T ss_conf 79999960588698999999998866344441120010054666505886144189996088169962689607788899
Q ss_pred HHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEE-EEEECCCCCCC--CHHHHHHHHHHHHHHCCCCHHHCCHHH
Q ss_conf 999874217899997687886478999999997299789-99975436674--025689999988862267301104266
Q gi|254780233|r 100 ERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPI-VVVNKVDRSDA--RADEVINEVFDLFSALDATDAQLDFPI 176 (624)
Q Consensus 100 er~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~I-vvINKiDr~~a--~~~~v~~ei~dlf~~l~a~de~ld~Pv 176 (624)
.|+++++|+|||||||.+|||+||+++|..|..+|+|.| |+|||||+.+. +++.+..|+.++|.+++.+++ ++|+
T Consensus 83 i~g~~~~D~aiLVVdA~eGv~~QT~eh~~la~~lgi~~iiV~iNK~D~~~~~~~~~~v~~ei~~~l~~~g~~~~--~~p~ 160 (195)
T cd01884 83 ITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGD--NTPI 160 (195)
T ss_pred HHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCC--CCEE
T ss_conf 86351136268998527787478999999999809996279996877898789999999999999984299955--6829
Q ss_pred HHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCCC
Q ss_conf 887886591646742233486413555321024542
Q gi|254780233|r 177 LYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPP 212 (624)
Q Consensus 177 ~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~P 212 (624)
+|+||++||...+.+ .+..+|.+|||+|.+++|+|
T Consensus 161 ip~Sa~~g~~~~~~~-~~~~~i~~Lldai~~~iP~P 195 (195)
T cd01884 161 VRGSALKALEGDDPN-KWVKKILELLDALDSYIPTP 195 (195)
T ss_pred EEEEHHHHHCCCCCC-CCCCCHHHHHHHHHHHCCCC
T ss_conf 997738753578887-55369999999999648998
No 32
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=100.00 E-value=0 Score=368.15 Aligned_cols=174 Identities=41% Similarity=0.626 Sum_probs=160.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECC-----EEEEEECCCCCCC
Q ss_conf 14999854689877889999998396142322000003885779870960646799999899-----7999972898754
Q gi|254780233|r 20 RNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWND-----VRINIVDTPGHAD 94 (624)
Q Consensus 20 RNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~-----~~iNiiDTPGH~D 94 (624)
|||||+||+|||||||+|+||+.+|.+.+.+.. ++++|++++||||||||.+..+++.|++ |.|||||||||+|
T Consensus 1 RNiaiiGHvd~GKTTL~~~ll~~tg~i~~~~~~-~~~~D~~~~E~eRgiTi~~~~~~~~~~~~~~~~~~in~iDtPGh~d 79 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMK-EQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVD 79 (179)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCC-CEECCCCHHHHHCCCEEEEEEEEEEEECCCCCCEEEEEEECCCCCC
T ss_conf 959999489989899999999985995414573-2441651767863866874336888413678714899998998645
Q ss_pred CHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCH
Q ss_conf 07999999874217899997687886478999999997299789999754366740256899999888622673011042
Q gi|254780233|r 95 FGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDF 174 (624)
Q Consensus 95 F~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~ 174 (624)
|.+|+.|+++++|+|||||||.+|+|+||+.+|+.|.+.++|+|+||||||+++++++++++++.++|. ++ . .
T Consensus 80 F~~~~~~al~~~D~allVVda~~Gv~~qT~~~~~~a~~~~~p~ivviNKiD~~~ad~~~v~~~i~~~~g-~~--~----~ 152 (179)
T cd01890 80 FSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSADPERVKQQIEDVLG-LD--P----S 152 (179)
T ss_pred CHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHC-CC--C----C
T ss_conf 177898899754427899864778737489999999876998899986555677899999999999868-89--7----6
Q ss_pred HHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCCC
Q ss_conf 66887886591646742233486413555321024542
Q gi|254780233|r 175 PILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPP 212 (624)
Q Consensus 175 Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~P 212 (624)
+++++||++| .|+..|||+|++++|+|
T Consensus 153 ~~v~vSA~~g-----------~gv~~Ll~~i~~~ip~p 179 (179)
T cd01890 153 EAILVSAKTG-----------LGVEDLLEAIVERIPPP 179 (179)
T ss_pred CEEEEECCCC-----------CCHHHHHHHHHHHCCCC
T ss_conf 7488437889-----------79899999999648898
No 33
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=100.00 E-value=0 Score=357.98 Aligned_cols=279 Identities=28% Similarity=0.392 Sum_probs=224.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCC------------CCC---CEECCCCHHHHHCCCEEEEEEEEEEECCEEE
Q ss_conf 1499985468987788999999839614232------------200---0003885779870960646799999899799
Q gi|254780233|r 20 RNIAIIAHVDHGKTTLVDELLKQSGVFRDNQ------------RVS---ERVMDCNDLEKERGITILAKVTSIVWNDVRI 84 (624)
Q Consensus 20 RNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~------------~v~---~~vmD~~~~EreRGITI~a~~~~~~~~~~~i 84 (624)
=||+++||||||||||+.+||+.+|.+.... ... ..+||..++||+|||||-.....|+++++++
T Consensus 8 l~i~~~GhVD~GKSTL~G~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~a~~~D~~~eEr~rGiTid~~~~~f~~~~~~~ 87 (426)
T PRK12317 8 LNLAVIGHVDHGKSTLVGRLLYETGAVDEHIIEEYEEEAKKKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKYYF 87 (426)
T ss_pred EEEEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHCCCEEEEEEEEEECCCCEE
T ss_conf 49999952287688887689877299448999999989986487752143212578668755827883169995498169
Q ss_pred EEECCCCCCCCHHHHHHHHHHHCEEEEEEECCC--CCCHHHHHHHHHHHHCCCC-EEEEEECCCCCC---CCHHHHHHHH
Q ss_conf 997289875407999999874217899997687--8864789999999972997-899997543667---4025689999
Q gi|254780233|r 85 NIVDTPGHADFGGEVERILCMVESVVVLVDAAE--GPMPQTKFVVGKALKIGLR-PIVVVNKVDRSD---ARADEVINEV 158 (624)
Q Consensus 85 NiiDTPGH~DF~gEVer~l~~~DgaiLvVdA~e--Gv~~QT~~vl~~A~~~~l~-~IvvINKiDr~~---a~~~~v~~ei 158 (624)
+|||+|||.||.-.+..+.+.+|.|+|||||.+ |+++||+.|+..|..+|++ .||+|||||..+ .+|+++.+++
T Consensus 88 ~iiD~PGH~~fi~nmi~Gas~~D~ailvV~A~~~~G~~~QT~eHl~l~~~lgi~~iiV~vnKmD~v~~~~~~~~~i~~~~ 167 (426)
T PRK12317 88 TIIDCPGHRDFVKNMITGASQADAAVLVVSARDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRYNEVKEEV 167 (426)
T ss_pred EEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 99878963667877874534677279999636566764778999999998099839999953335677889999999999
Q ss_pred HHHHHHCCCCHHHCCHHHHHHHHHCCEEC--CCCCCCCCCCCHHHHHHHHCCCCCCCC-CCCHHHCCCCCCCCCCCCCEE
Q ss_conf 98886226730110426688788659164--674223348641355532102454223-320000011110136777349
Q gi|254780233|r 159 FDLFSALDATDAQLDFPILYGSGRFGWMS--DSSDGSRDQGMVPLLNLIVDHVPPPVI-SEGEFKMIGTILEKDPFLGRI 235 (624)
Q Consensus 159 ~dlf~~l~a~de~ld~Pv~~~Sa~~G~~~--~~~~~~~~~gl~~Lld~Ii~~iP~P~~-~e~pl~~~V~~i~~d~y~Gri 235 (624)
.+++..++.+.+. .|+++.||++|.-. .....+|..| ..|++++ +.++.|.. .+.||+|.|..+..-+..|++
T Consensus 168 ~~~l~~~g~~~~~--i~~iPiSa~~Gdni~~~s~~~~Wy~G-~tLl~~L-~~~~~~~~~~~~p~r~~I~~v~~~~g~Gtv 243 (426)
T PRK12317 168 SKLLKMVGYKPDD--IPFIPVSAFEGDNVVKKSDNTPWYNG-PTLLEAL-DALKPPEKPTDKPLRIPIQDVYSITGVGTV 243 (426)
T ss_pred HHHHHHCCCCCCC--CEEEEEECCCCCCCCCCCCCCCCCCC-HHHHHHH-HCCCCCCCCCCCCEEEEEEEEEEECCCEEE
T ss_conf 9999970988034--70887532346564116766863220-7899998-637777665578535578778840687079
Q ss_pred EEEEECCCCCCCCCEEEEECCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCC--CCC--CCCCCCEECCCCCCC
Q ss_conf 999960780515988999605785012114553011036653444112545543222--233--210122110556521
Q gi|254780233|r 236 VTGRIHSGTIKSNQNIKALSPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSIA--GLV--KATVADTFCDPSIDE 310 (624)
Q Consensus 236 a~gRV~sGtlk~Gd~V~vl~~~g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIvaIa--Gl~--~~~iGDTL~~~~~p~ 310 (624)
.+|||.||+++.||+|.++. .+. ..+|..|..+. .++++|.|||.|+++ +++ ++..||.||++++|.
T Consensus 244 v~G~v~sG~i~~Gd~v~i~P-s~~---~~~VksI~~~~----~~v~~a~aG~~v~l~L~~i~~~dI~rG~Vl~~~~~~~ 314 (426)
T PRK12317 244 PVGRVETGVLKVGDKVVFMP-AGK---VGEVKSIEMHH----EELPQAEPGDNIGFNVRGVGKNDIKRGDVAGHTDNPP 314 (426)
T ss_pred EEEEECCCCCCCCCEEEEEC-CCC---CEEEEEEEECC----CEEEEEECCCEEEEEEECCCHHCCCCCCEEECCCCCC
T ss_conf 98684438543799999967-998---65897688669----4788995898699998367442277864894799998
No 34
>PRK12736 elongation factor Tu; Reviewed
Probab=100.00 E-value=0 Score=360.15 Aligned_cols=281 Identities=29% Similarity=0.390 Sum_probs=222.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHH
Q ss_conf 14999854689877889999998396142322000003885779870960646799999899799997289875407999
Q gi|254780233|r 20 RNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEV 99 (624)
Q Consensus 20 RNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEV 99 (624)
=||+++||||||||||+.+|++..+...+...-....||.+++||+|||||....+.|+++++.|++||+|||.||.-.+
T Consensus 13 ~ni~~~GHVD~GKSTL~g~L~~~~~~~~~~~~~~~~~~D~~~eEr~rGiTid~~~~~~~t~~~~~~~iD~PGH~~fi~nm 92 (394)
T PRK12736 13 VNIGTIGHVDHGKTTLTAAITKVLAERGLAQAKDYASIDAAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYVKNM 92 (394)
T ss_pred EEEEEEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHCCCCEEEEEEEEEECCCEEEEEEECCCCHHHHCCE
T ss_conf 49999951288489899897504545065102222331166556247821784189997288369998889725431104
Q ss_pred HHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCCC--CCHHHHHHHHHHHHHHCCCCHHHCCHHH
Q ss_conf 9998742178999976878864789999999972997-899997543667--4025689999988862267301104266
Q gi|254780233|r 100 ERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLR-PIVVVNKVDRSD--ARADEVINEVFDLFSALDATDAQLDFPI 176 (624)
Q Consensus 100 er~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~-~IvvINKiDr~~--a~~~~v~~ei~dlf~~l~a~de~ld~Pv 176 (624)
.+....+|.|+|||||.+|+++||+.|+..+..+|++ .||+|||||..+ ..++.+..++.+++...+...+ +.|+
T Consensus 93 i~Ga~~~D~alLVV~A~~G~~~QT~EHl~l~~~lgv~~~IV~vnK~D~v~~~~~~~~v~~~i~~~l~~~g~~~~--~ip~ 170 (394)
T PRK12736 93 ITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPGD--DIPV 170 (394)
T ss_pred EEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCC--CCCE
T ss_conf 44353466589999858774677999999999829991599998878998399999999999999987699912--0609
Q ss_pred HHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCCCCCC-CCHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEC
Q ss_conf 887886591646742233486413555321024542233-2000001111013677734999996078051598899960
Q gi|254780233|r 177 LYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPPVIS-EGEFKMIGTILEKDPFLGRIVTGRIHSGTIKSNQNIKALS 255 (624)
Q Consensus 177 ~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~P~~~-e~pl~~~V~~i~~d~y~Gria~gRV~sGtlk~Gd~V~vl~ 255 (624)
+++|+..|+- ....+..++..||+++.+++|.|..+ ++||+|.|..+...+..|.+.+|||.+|+++.||++.++.
T Consensus 171 i~~s~~~~~~---~~~~~~~~i~~Ll~~ld~~~~~p~r~~~~p~r~~Id~vf~v~G~GtVvtG~V~sG~i~~Gd~v~i~~ 247 (394)
T PRK12736 171 IRGSALKALE---GDPKWEDAIMELMDAVDEYIPTPERDTDKPFLMPVEDVFSITGRGTVVTGRVERGTVKVGDEVEIVG 247 (394)
T ss_pred EEEECCCCCC---CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEECCCEEEEEEEEEECEEECCCEEEEEE
T ss_conf 9845436136---8873577899999999852778888777762887111786089758999998014686599899970
Q ss_pred CCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCC--CC--CCCCCCCEECCCCCCCC
Q ss_conf 5785012114553011036653444112545543222--23--32101221105565211
Q gi|254780233|r 256 PDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSIA--GL--VKATVADTFCDPSIDEP 311 (624)
Q Consensus 256 ~~g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIvaIa--Gl--~~~~iGDTL~~~~~p~~ 311 (624)
.... ...+|..|..+ +.++++|.|||.|+++ |+ +++..|+.||+++...|
T Consensus 248 ~~~~--~~~~VrsI~~~----~~~v~~a~aG~~v~l~L~gid~~~i~rG~vL~~~~~~~p 301 (394)
T PRK12736 248 IKET--QKTTVTGVEMF----RKLLDEGQAGDNVGVLLRGVDRDEVERGQVLAKPGSIKP 301 (394)
T ss_pred CCCC--CEEEEEEEEEC----CCCCCCCCCCCEEEEEECCCCHHHCCCEEEEECCCCCCC
T ss_conf 7998--07999987367----837248047678999976899899671669966998898
No 35
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=100.00 E-value=0 Score=351.90 Aligned_cols=283 Identities=23% Similarity=0.309 Sum_probs=222.1
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCC------------CCC-----CEECCCCHHHHHCCCEEEEEEEEE
Q ss_conf 802431499985468987788999999839614232------------200-----000388577987096064679999
Q gi|254780233|r 15 GYMQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQ------------RVS-----ERVMDCNDLEKERGITILAKVTSI 77 (624)
Q Consensus 15 ~~~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~------------~v~-----~~vmD~~~~EreRGITI~a~~~~~ 77 (624)
....+=|+.++||||||||||+.+|||.+|.+.+.+ ... ..+||....||||||||-.....|
T Consensus 23 ~~k~~l~~v~~GhVD~GKSTl~GrlL~~~~~v~~~~~~~~~~~s~~~g~~~~~~~~a~l~D~l~~ERe~GiTIdva~~~f 102 (475)
T PRK05124 23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF 102 (475)
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHCCCEEEEEEEEE
T ss_conf 47985799999055797788889999981997889999999999982887772224442059988986697169567899
Q ss_pred EECCEEEEEECCCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCCC---CCHHH
Q ss_conf 98997999972898754079999998742178999976878864789999999972997-899997543667---40256
Q gi|254780233|r 78 VWNDVRINIVDTPGHADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLR-PIVVVNKVDRSD---ARADE 153 (624)
Q Consensus 78 ~~~~~~iNiiDTPGH~DF~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~-~IvvINKiDr~~---a~~~~ 153 (624)
+++.++++|+|||||.||.--.-.+.+-+|.|||||||.+|+++|||+|+..|..+|++ .||+|||||.-+ .+|++
T Consensus 103 ~t~~r~~~i~DaPGH~~f~~NMitGas~aD~aiLvVdA~~G~~~QTreH~~i~~llGI~~iIVaVNKMDlV~~~~~~f~~ 182 (475)
T PRK05124 103 STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYSEEVFER 182 (475)
T ss_pred ECCCEEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEECHHCCCCCHHHHHH
T ss_conf 53876899973796387788898888767889999989889478889999999865998599998504313543999999
Q ss_pred HHHHHHHHHHHCCCCHHHCCHHHHHHHHHCCE--ECCCCCCCCCCCCHHHHHHHHCCCCCCCC-CCCHHHCCCCCCCCCC
Q ss_conf 89999988862267301104266887886591--64674223348641355532102454223-3200000111101367
Q gi|254780233|r 154 VINEVFDLFSALDATDAQLDFPILYGSGRFGW--MSDSSDGSRDQGMVPLLNLIVDHVPPPVI-SEGEFKMIGTILEKDP 230 (624)
Q Consensus 154 v~~ei~dlf~~l~a~de~ld~Pv~~~Sa~~G~--~~~~~~~~~~~gl~~Lld~Ii~~iP~P~~-~e~pl~~~V~~i~~d~ 230 (624)
+.+++.+++..++... ++++++.||+.|. .......+|..| ..||+.+ +.++.|.. .+.||+|.|..+....
T Consensus 183 I~~e~~~~l~~~g~~~---~v~~IPISal~GdNIv~~S~~m~WY~G-ptLle~L-e~~~~~~~~~~~pfRlPVq~V~r~~ 257 (475)
T PRK05124 183 IREDYLTFAEQLPGNL---DIRFVPLSALEGDNVVSQSESMPWYSG-PTLLEVL-ETVDIQREVDAQPFRFPVQYVNRPN 257 (475)
T ss_pred HHHHHHHHHHHCCCCC---CCCEEECCCCCCCCCCCCCCCCCCCCC-CCHHHHH-HCCCCCCCCCCCCCCCCCEEEECCC
T ss_conf 9999999999749988---850775413457676215667874567-5399998-5588887655566556657986268
Q ss_pred CCCEEEEEEECCCCCCCCCEEEEECCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC--CCCCCCEECCCCC
Q ss_conf 77349999960780515988999605785012114553011036653444112545543222233--2101221105565
Q gi|254780233|r 231 FLGRIVTGRIHSGTIKSNQNIKALSPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSIAGLV--KATVADTFCDPSI 308 (624)
Q Consensus 231 y~Gria~gRV~sGtlk~Gd~V~vl~~~g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIvaIaGl~--~~~iGDTL~~~~~ 308 (624)
+-+|...|||.||++++||+|.++ |+|. ..+|.+|+.+.+ ++++|.|||-|++.--+ ++..||.||++++
T Consensus 258 ~~~rg~~G~I~sG~i~~GD~V~vl-Psg~---~a~Vk~I~~~~~----~~~~A~aG~sV~l~L~deiDIsRGdVl~~~~~ 329 (475)
T PRK05124 258 LDFRGYAGTLASGVVKVGDRVKVL-PSGK---ESNVARIVTFDG----DLEEAFAGEAITLVLEDEIDISRGDLLVAADE 329 (475)
T ss_pred CCCEEEEEEEEECEECCCCEEEEC-CCCC---EEEEEEEEECCC----CCCCCCCCCEEEEEEECCCCCCCCCEEECCCC
T ss_conf 773168899713327179989993-8997---589899996586----52543899879999603446899838973899
Q ss_pred CC
Q ss_conf 21
Q gi|254780233|r 309 DE 310 (624)
Q Consensus 309 p~ 310 (624)
+.
T Consensus 330 ~p 331 (475)
T PRK05124 330 AP 331 (475)
T ss_pred CC
T ss_conf 86
No 36
>PTZ00336 elongation factor 1-alpha; Provisional
Probab=100.00 E-value=0 Score=350.69 Aligned_cols=276 Identities=23% Similarity=0.329 Sum_probs=223.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCC------CC---------CEECCCCHHHHHCCCEEEEEEEEEEECCEEEE
Q ss_conf 4999854689877889999998396142322------00---------00038857798709606467999998997999
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQR------VS---------ERVMDCNDLEKERGITILAKVTSIVWNDVRIN 85 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~------v~---------~~vmD~~~~EreRGITI~a~~~~~~~~~~~iN 85 (624)
||+++||||||||||+.+||+.+|.+.+..- .. ..+||..++||||||||-.....|+.+.++|+
T Consensus 9 ni~~~GhVD~GKSTL~G~Ll~~~~~v~~~~l~~~~~~~~~~g~~s~~~a~~~D~~~~Er~rGiTid~~~~~f~t~~~~~~ 88 (449)
T PTZ00336 9 NLVVVGHVDAGKSTATGHLIYKCGGIDKRTIEKFEKEAAEIGKASFKYAWVLDKLKAERERGITIDIALWKFESPKSVFT 88 (449)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHCCCEEEEEEEEEEECCCEEEE
T ss_conf 99999277896888899999874884789999999999871875143254512772232287589867999974984899
Q ss_pred EECCCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCH-------HHHHHHHHHHHCCCCEE-EEEECCCC-----CCCCHH
Q ss_conf 972898754079999998742178999976878864-------78999999997299789-99975436-----674025
Q gi|254780233|r 86 IVDTPGHADFGGEVERILCMVESVVVLVDAAEGPMP-------QTKFVVGKALKIGLRPI-VVVNKVDR-----SDARAD 152 (624)
Q Consensus 86 iiDTPGH~DF~gEVer~l~~~DgaiLvVdA~eGv~~-------QT~~vl~~A~~~~l~~I-vvINKiDr-----~~a~~~ 152 (624)
|+|+|||.||.--+.+..+.+|.|||||||.+|+++ ||+.|+..|..+|++.+ |+|||||. ...+|+
T Consensus 89 iiD~PGH~~fi~nmi~Gas~aD~aiLVVdA~~G~~e~g~~~~gQTreHl~i~~~Lgv~~iiV~vNKmD~~~v~~~~~r~~ 168 (449)
T PTZ00336 89 IIDAPGHRDFIKNMITGTSQADAAILMIDSTHGGFEAGISKDGQTREHALLAFTLGVKQMVVCCNKMDDKTVTYAQSRYD 168 (449)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCEECCCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHH
T ss_conf 98689468889999976500676799998787741035566775399999998669977999986201566211378999
Q ss_pred HHHHHHHHHHHHCCCCHHHCCHHHHHHHHHCCEE--CCCCCCCCCCCCHHHHHHHHCCCCCCC-CCCCHHHCCCCCCCCC
Q ss_conf 6899999888622673011042668878865916--467422334864135553210245422-3320000011110136
Q gi|254780233|r 153 EVINEVFDLFSALDATDAQLDFPILYGSGRFGWM--SDSSDGSRDQGMVPLLNLIVDHVPPPV-ISEGEFKMIGTILEKD 229 (624)
Q Consensus 153 ~v~~ei~dlf~~l~a~de~ld~Pv~~~Sa~~G~~--~~~~~~~~~~gl~~Lld~Ii~~iP~P~-~~e~pl~~~V~~i~~d 229 (624)
++..++..++..++.+.+++ ++++.||++|.- ......+|.. -..|++++ +.+++|. ..++||+|.|..+...
T Consensus 169 ~i~~e~~~~l~~~g~~~~~v--~~IPiSa~~Gdni~~~s~~~~Wy~-GptLl~~L-d~~~~~~r~~~~p~r~pV~~vf~~ 244 (449)
T PTZ00336 169 EISKEVGAYLKRVGYNPEKV--RFIPISGWQGDNMIEKSDNMPWYK-GPTLLDAL-DMLEPPVRPVDKPLRLPLQDVYKI 244 (449)
T ss_pred HHHHHHHHHHHHCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCEEC-CCHHHHHH-HCCCCCCCCCCCCCCCCCCEEEEC
T ss_conf 99999999998749990005--435420104777532655575410-52489997-544898775667642340107732
Q ss_pred CCCCEEEEEEECCCCCCCCCEEEEECCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCC--CCCC--CCCCCCEECC
Q ss_conf 77734999996078051598899960578501211455301103665344411254554322--2233--2101221105
Q gi|254780233|r 230 PFLGRIVTGRIHSGTIKSNQNIKALSPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSI--AGLV--KATVADTFCD 305 (624)
Q Consensus 230 ~y~Gria~gRV~sGtlk~Gd~V~vl~~~g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIvaI--aGl~--~~~iGDTL~~ 305 (624)
+..|++.+|||.||+++.||+|.++ |++. ..+|.+|..+. .++++|.|||.|++ .+++ ++..||.+++
T Consensus 245 ~g~gtvv~G~V~sG~v~~Gd~V~i~-Ps~~---~~~VksI~~~~----~~v~~A~aG~~V~i~L~~i~~~dI~rGdVl~~ 316 (449)
T PTZ00336 245 GGIGTVPVGRVETGIMKPGDVVTFA-PANV---TTEVKSIEMHH----EQLAEAQPGDNVGFNVKNVSVKDIRRGNVCGN 316 (449)
T ss_pred CCCCEEEEEEEECCCCCCCCEEEEC-CCCC---EEEEEEEEECC----CEECEECCCCEEEEECCCCCHHCCCCCCEEEC
T ss_conf 7883188899943630589999991-7998---79998999899----38596779984789248873530788639962
Q ss_pred CCC
Q ss_conf 565
Q gi|254780233|r 306 PSI 308 (624)
Q Consensus 306 ~~~ 308 (624)
+.+
T Consensus 317 ~~~ 319 (449)
T PTZ00336 317 SKN 319 (449)
T ss_pred CCC
T ss_conf 899
No 37
>CHL00071 tufA elongation factor Tu
Probab=100.00 E-value=0 Score=353.82 Aligned_cols=283 Identities=28% Similarity=0.368 Sum_probs=222.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHH
Q ss_conf 49998546898778899999983961423220000038857798709606467999998997999972898754079999
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVE 100 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVe 100 (624)
||+++||||||||||+.+|++..+...+...-.-+-||..++||+|||||-.....++++++.+++||+|||.||.-.+.
T Consensus 14 ni~~~GHVD~GKSTL~g~L~~~~~~~~~~~~~~~~~~D~~~eEr~rGiTid~~~~~~et~~~~~~~iD~PGH~~fv~nmi 93 (409)
T CHL00071 14 NIGTIGHVDHGKTTLTAAITMTLAANGGAKGKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYVKNMI 93 (409)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHCCCEEEECEEEEECCCEEEEEEECCCHHHHHHHHH
T ss_conf 99999545883999999986453004513343155323797687369448802489962875999986796789999987
Q ss_pred HHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEE-EEEECCCCCC-CC-HHHHHHHHHHHHHHCCCCHHHCCHHHH
Q ss_conf 99874217899997687886478999999997299789-9997543667-40-256899999888622673011042668
Q gi|254780233|r 101 RILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPI-VVVNKVDRSD-AR-ADEVINEVFDLFSALDATDAQLDFPIL 177 (624)
Q Consensus 101 r~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~I-vvINKiDr~~-a~-~~~v~~ei~dlf~~l~a~de~ld~Pv~ 177 (624)
+..+.+|.|+|||||.+|+++||+.|+..|..+|+|.+ |+|||||.-+ .+ ++.+..++..++..++...+ +.|++
T Consensus 94 ~Gas~aD~alLVV~A~~G~~~QTkEHl~l~~~lgV~~~IVavnKmD~v~~~~~~e~i~~~i~~~l~~~g~~~~--~i~~v 171 (409)
T CHL00071 94 TGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVRELLDKYDFPGD--EIPIV 171 (409)
T ss_pred HHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCC--CCEEE
T ss_conf 5230158128999868788500499999999739993655555679854899999999999999997399845--56089
Q ss_pred HHHHHCCEECCCC-------CCCCCCCCHHHHHHHHCCCCCCCCC-CCHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCC
Q ss_conf 8788659164674-------2233486413555321024542233-2000001111013677734999996078051598
Q gi|254780233|r 178 YGSGRFGWMSDSS-------DGSRDQGMVPLLNLIVDHVPPPVIS-EGEFKMIGTILEKDPFLGRIVTGRIHSGTIKSNQ 249 (624)
Q Consensus 178 ~~Sa~~G~~~~~~-------~~~~~~gl~~Lld~Ii~~iP~P~~~-e~pl~~~V~~i~~d~y~Gria~gRV~sGtlk~Gd 249 (624)
++||..|+..... ...|..++..|++++..++|.|..+ ++||++.|..+..-+..|.+.+|||.||+++.||
T Consensus 172 p~sa~~~~~~~~~~~~~~~~~~~w~~~~~~Ll~~l~~~~p~~~r~~~~p~r~~Id~vf~v~G~GtVv~G~v~sG~v~~Gd 251 (409)
T CHL00071 172 AGSALLALEALIENPKIKRGENKWVDKIYNLMDAVDSYIPTPERDTDKPFLMAIEDVFSITGRGTVATGRIERGTVKVGD 251 (409)
T ss_pred ECCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCEEECCCCEEEEEEEEEECCCCCCC
T ss_conf 65213323431258754556561244799999988723778888767760644221475389788999999145634999
Q ss_pred EEEEECCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCC--CC--CCCCCCCEECCCCCCCC
Q ss_conf 8999605785012114553011036653444112545543222--23--32101221105565211
Q gi|254780233|r 250 NIKALSPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSIA--GL--VKATVADTFCDPSIDEP 311 (624)
Q Consensus 250 ~V~vl~~~g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIvaIa--Gl--~~~~iGDTL~~~~~p~~ 311 (624)
++.++.... .+..+|..|..+ +.++++|.|||.++++ |+ +++..|+.||++..+.|
T Consensus 252 ~v~i~~~~~--~~~~~VksI~~~----~~~~~~a~aG~~v~l~L~gi~~~~I~rG~VL~~p~~~~~ 311 (409)
T CHL00071 252 TVEIVGLRE--TRTTTVTGLEMF----QKTLDEGLAGDNVGILLRGIQKEDIERGMVLAKPGTITP 311 (409)
T ss_pred EEEEEECCC--CCEEEEEEEEEC----CCCCCEECCCCEEEEEECCCCHHHCCCEEEEECCCCCCC
T ss_conf 899997699--860799999988----959888879988999975998788774689968999987
No 38
>PRK00049 elongation factor Tu; Reviewed
Probab=100.00 E-value=0 Score=353.06 Aligned_cols=282 Identities=28% Similarity=0.379 Sum_probs=219.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCC-EECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHH
Q ss_conf 4999854689877889999998396142322000-003885779870960646799999899799997289875407999
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSE-RVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEV 99 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~-~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEV 99 (624)
||+++||||||||||+.+|++........+.... ..||.+++||+|||||-.....|+.+++.++|||+|||.||.--+
T Consensus 14 ni~~~GHVD~GKSTL~g~Lt~~l~~~~g~~~~~~~~~~D~~~eEr~rGiTid~~~~~~~t~~~~~~~iD~PGH~~fiknm 93 (397)
T PRK00049 14 NVGTIGHVDHGKTTLTAAITKVLAKKYGGAEAKAYDQIDNAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYVKNM 93 (397)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHCCCEEEEEEEEEECCCCEEEEECCCCHHHHHHHH
T ss_conf 99999125888999999998666654385310013330257667625816998799997288149995178638889998
Q ss_pred HHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCE-EEEEECCCCCC--CCHHHHHHHHHHHHHHCCCCHHHCCHHH
Q ss_conf 99987421789999768788647899999999729978-99997543667--4025689999988862267301104266
Q gi|254780233|r 100 ERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRP-IVVVNKVDRSD--ARADEVINEVFDLFSALDATDAQLDFPI 176 (624)
Q Consensus 100 er~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~-IvvINKiDr~~--a~~~~v~~ei~dlf~~l~a~de~ld~Pv 176 (624)
.+...-+|.|+|||||.+|+|+||+.++..|..+|++. ||+|||||.-+ .+++.+..++.+++...+...+ +.|+
T Consensus 94 I~Ga~~~D~alLVV~A~~G~~~QT~EHl~l~~~LGv~~~iV~vnK~D~v~~~~~~~~v~~~i~~~l~~~~f~~~--~ipi 171 (397)
T PRK00049 94 ITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGD--DTPI 171 (397)
T ss_pred HHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCC--CCCE
T ss_conf 73012156799999748886652899999999809982799998668888599999999999999984699844--4768
Q ss_pred HHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCCCCCC-CCHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEC
Q ss_conf 887886591646742233486413555321024542233-2000001111013677734999996078051598899960
Q gi|254780233|r 177 LYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPPVIS-EGEFKMIGTILEKDPFLGRIVTGRIHSGTIKSNQNIKALS 255 (624)
Q Consensus 177 ~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~P~~~-e~pl~~~V~~i~~d~y~Gria~gRV~sGtlk~Gd~V~vl~ 255 (624)
+++||..|+-. .....+..++..|++++.+++|.|..+ ++||+|.|..+..-+..|.+.+|+|.||+++.||+|.++.
T Consensus 172 v~~S~~~~~~~-~~~~~~~~~i~~Ll~~ld~~~~~p~r~~~~p~r~~Id~vf~i~G~GtVVtGtv~sG~i~~Gd~v~i~~ 250 (397)
T PRK00049 172 IRGSALKALEE-IGDPEWEAKILELMEAVDSYIPEPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVG 250 (397)
T ss_pred EEEEEEEECCC-CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCEEEECCCCEEEEEEEEEEEECCCCEEEEEE
T ss_conf 98550031147-78653178999999999864778888888860777233887679727999898000560799899960
Q ss_pred CCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCC--CC--CCCCCCCEECCCCCCCC
Q ss_conf 5785012114553011036653444112545543222--23--32101221105565211
Q gi|254780233|r 256 PDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSIA--GL--VKATVADTFCDPSIDEP 311 (624)
Q Consensus 256 ~~g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIvaIa--Gl--~~~~iGDTL~~~~~p~~ 311 (624)
.... ...+|..|..+ +.++++|.|||.|+++ |+ +++..|+.||+|+...|
T Consensus 251 ~~~~--~~~~VksIq~~----~~~v~~a~aG~~v~i~L~gi~~~~I~rG~vL~~p~~~~p 304 (397)
T PRK00049 251 IRDT--QKTTVTGVEMF----RKLLDEGQAGDNVGLLLRGIKREDVERGQVLAKPGSITP 304 (397)
T ss_pred CCCC--CEEEEEEEEEC----CEEEEEECCCCEEEEEECCCCHHHCCCCCEEECCCCCCC
T ss_conf 6988--47999999962----707026358877999977998898576019956998887
No 39
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=100.00 E-value=0 Score=353.27 Aligned_cols=181 Identities=42% Similarity=0.652 Sum_probs=168.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHH
Q ss_conf 49998546898778899999983961423220000038857798709606467999998997999972898754079999
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVE 100 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVe 100 (624)
||||+||+|||||||+++||+.+|.+.+.+.+.++++|++++||+|||||.+...+++|++++|||||||||.||.+++.
T Consensus 1 Nv~iiGh~d~GKTTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~i~~iDTPGh~~f~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHCCCEEEEEEEEEEECCEEEEEEECCCCHHHHHHHH
T ss_conf 98999179989999999999764723568625888505777888638413222799998998999996998188999999
Q ss_pred HHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC-CCHHHHHHHHHHHHHHCCCCH-------HHC
Q ss_conf 998742178999976878864789999999972997899997543667-402568999998886226730-------110
Q gi|254780233|r 101 RILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSD-ARADEVINEVFDLFSALDATD-------AQL 172 (624)
Q Consensus 101 r~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~-a~~~~v~~ei~dlf~~l~a~d-------e~l 172 (624)
|+++.+|+|||||||.+|+++||+.+|+.+...++|.|+||||||+.+ ++++++++++.+.+...+... .--
T Consensus 81 ~~l~~aD~ailvVda~~G~~~qt~~~~~~~~~~~~p~iv~iNKiD~~~~~~~~~~~~ei~~~l~~~~~~~~~~~~~~~~~ 160 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNGL 160 (189)
T ss_pred HHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCC
T ss_conf 99864685699998798998789999999997699879999897187756299999999999875321023211012588
Q ss_pred CHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCCC
Q ss_conf 4266887886591646742233486413555321024542
Q gi|254780233|r 173 DFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPP 212 (624)
Q Consensus 173 d~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~P 212 (624)
++|++++||++| .|+.+|||+|++++|+|
T Consensus 161 ~~piv~iSA~~G-----------~gv~~Lld~i~~~lP~p 189 (189)
T cd00881 161 LVPIVPGSALTG-----------IGVEELLEAIVEHLPPP 189 (189)
T ss_pred CCEEEEEECCCC-----------CCHHHHHHHHHHHCCCC
T ss_conf 775999888678-----------69799999999768799
No 40
>PRK12735 elongation factor Tu; Reviewed
Probab=100.00 E-value=0 Score=347.57 Aligned_cols=281 Identities=27% Similarity=0.357 Sum_probs=215.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHH
Q ss_conf 14999854689877889999998396142322000003885779870960646799999899799997289875407999
Q gi|254780233|r 20 RNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEV 99 (624)
Q Consensus 20 RNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEV 99 (624)
=||+++||||||||||+.+|++..+...+...-.-..+|.+++||+|||||-.....|++++++++|||+|||.||.--+
T Consensus 13 ini~~~GHVD~GKSTL~g~Lt~~~~~~~~~~~~~~~~~D~~~eEr~rGiTid~~~~~fet~~~~~~~iD~PGHe~fiknM 92 (396)
T PRK12735 13 VNVGTIGHVDHGKTTLTAAITTVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYVKNM 92 (396)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHCCCEEEEEEEEEEECCCEEEEEEECCCHHHHHHHH
T ss_conf 49999942688589899998614545246431221221166567437737985699997398059998368668877666
Q ss_pred HHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCE-EEEEECCCCCC-C-CHHHHHHHHHHHHHHCCCCHHHCCHHH
Q ss_conf 99987421789999768788647899999999729978-99997543667-4-025689999988862267301104266
Q gi|254780233|r 100 ERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRP-IVVVNKVDRSD-A-RADEVINEVFDLFSALDATDAQLDFPI 176 (624)
Q Consensus 100 er~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~-IvvINKiDr~~-a-~~~~v~~ei~dlf~~l~a~de~ld~Pv 176 (624)
-....-+|.|+|||||.+|+|+||+.|+..|..+|++. ||+|||||.-+ . .++.+.+++.+++...+...+ +.|+
T Consensus 93 I~Ga~~aD~alLVV~A~~G~~~QTrEHl~l~~~lgv~~~iV~vnK~D~v~~~~~~e~v~~~i~~~l~~~~f~~~--~~pi 170 (396)
T PRK12735 93 ITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGD--DTPI 170 (396)
T ss_pred HHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCC--CCCE
T ss_conf 41004256799999868787531699999999839985899998758888199999999999999985599966--4779
Q ss_pred HHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCCCCC-CCCHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEC
Q ss_conf 88788659164674223348641355532102454223-32000001111013677734999996078051598899960
Q gi|254780233|r 177 LYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPPVI-SEGEFKMIGTILEKDPFLGRIVTGRIHSGTIKSNQNIKALS 255 (624)
Q Consensus 177 ~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~P~~-~e~pl~~~V~~i~~d~y~Gria~gRV~sGtlk~Gd~V~vl~ 255 (624)
+++|+..++-... ......++..|++++-+++|.|.. .++||++.|..+...+..|.+.+|||.||+++.||+|.++.
T Consensus 171 v~~S~~~~~~~~~-~~~~~~~i~~Ll~~l~~~~~~p~r~~~~pfrl~Id~vf~v~G~GtVVtGtV~sG~i~~Gd~v~i~~ 249 (396)
T PRK12735 171 IRGSALKALEGDA-EWIGEAKILELMEALDSYIPTPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIVKVGDEVEIVG 249 (396)
T ss_pred EEEEEEECCCCCC-CCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEEEECCCCEEEEEE
T ss_conf 9967337225887-434447799999998852678777778865999764777679715999898121562799899972
Q ss_pred CCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCC--CC--CCCCCCCEECCCCCC
Q ss_conf 5785012114553011036653444112545543222--23--321012211055652
Q gi|254780233|r 256 PDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSIA--GL--VKATVADTFCDPSID 309 (624)
Q Consensus 256 ~~g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIvaIa--Gl--~~~~iGDTL~~~~~p 309 (624)
.... ...+|..|..+ +.++++|.|||.|+++ |+ +++..|+.||+|...
T Consensus 250 ~~~~--~~~~V~sIq~~----~~~v~~a~aG~~v~l~L~gi~~~~i~rG~VL~~p~~~ 301 (396)
T PRK12735 250 IKDT--QKTTVTGVEMF----RKLLDEGQAGDNVGVLLRGTKREDVERGQVLAKPGSI 301 (396)
T ss_pred CCCC--CEEEEEEEEEC----CCCCCEECCCCEEEEEECCCCHHHCCCEEEEECCCCC
T ss_conf 6998--46999999986----7080271488789999479988985626799669987
No 41
>PTZ00141 elongation factor 1 alpha; Provisional
Probab=100.00 E-value=0 Score=339.71 Aligned_cols=277 Identities=23% Similarity=0.322 Sum_probs=221.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCC------------CCC---CEECCCCHHHHHCCCEEEEEEEEEEECCEEE
Q ss_conf 1499985468987788999999839614232------------200---0003885779870960646799999899799
Q gi|254780233|r 20 RNIAIIAHVDHGKTTLVDELLKQSGVFRDNQ------------RVS---ERVMDCNDLEKERGITILAKVTSIVWNDVRI 84 (624)
Q Consensus 20 RNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~------------~v~---~~vmD~~~~EreRGITI~a~~~~~~~~~~~i 84 (624)
=||+++||||||||||+.+||+.+|.+.+.. ... ..+||..++||||||||-.....|+.+.+++
T Consensus 8 l~i~~~GhVD~GKSTL~G~Ll~~~g~v~~~~~~~~~~~~~~~g~~~~~~a~~~D~~~~Er~rGiTidv~~~~f~t~~~~~ 87 (443)
T PTZ00141 8 INLVVIGHVDSGKSTTTGHLIYKLGGIDKRTIEKFEKESAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYYY 87 (443)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEHHHHCCCHHHHHCCCEEEEEEEEEECCCEEE
T ss_conf 59999947798288889999987388468899999888887178720004453077667636710734799994398899
Q ss_pred EEECCCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCH-------HHHHHHHHHHHCCCCE-EEEEECCCCC---CCCHHH
Q ss_conf 9972898754079999998742178999976878864-------7899999999729978-9999754366---740256
Q gi|254780233|r 85 NIVDTPGHADFGGEVERILCMVESVVVLVDAAEGPMP-------QTKFVVGKALKIGLRP-IVVVNKVDRS---DARADE 153 (624)
Q Consensus 85 NiiDTPGH~DF~gEVer~l~~~DgaiLvVdA~eGv~~-------QT~~vl~~A~~~~l~~-IvvINKiDr~---~a~~~~ 153 (624)
+|||+|||.||.--.-...+.+|.|||||||.+|+++ ||+.|+..|..+|++. ||+|||||.- ..+|++
T Consensus 88 ~iiD~PGH~~fi~nmi~Gas~aD~ailvVdA~~G~~e~gf~~~gQTreH~~i~~~lgv~~iIVaVNKmD~v~~~e~~f~~ 167 (443)
T PTZ00141 88 TVIDAPGHRDFIKNMITGTSQADVALLVVPAEVGGFEGAFSKEGQTREHALLAFTLGVKQIIVGINKMDTCDYKEDRYEE 167 (443)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEEEECCCCCHHHHHHH
T ss_conf 99989972888999996341077589999867785213466678639999999973997599999962156660999999
Q ss_pred HHHHHHHHHHHCCCCHHHCCHHHHHHHHHCCE--ECCCCCCCCCCCCHHHHHHHHCCCCCCCC-CCCHHHCCCCCCCCCC
Q ss_conf 89999988862267301104266887886591--64674223348641355532102454223-3200000111101367
Q gi|254780233|r 154 VINEVFDLFSALDATDAQLDFPILYGSGRFGW--MSDSSDGSRDQGMVPLLNLIVDHVPPPVI-SEGEFKMIGTILEKDP 230 (624)
Q Consensus 154 v~~ei~dlf~~l~a~de~ld~Pv~~~Sa~~G~--~~~~~~~~~~~gl~~Lld~Ii~~iP~P~~-~e~pl~~~V~~i~~d~ 230 (624)
+.+++.+++..++.+.+. .|+++.||+.|. .......+|..| ..|++++ +.+++|.. .+.||+|.|..+..-+
T Consensus 168 i~~~~~~~l~~~g~~~~~--i~~iPiSa~~Gdni~~~s~~~~Wy~G-~tLle~L-d~~~~~~~~~~~p~r~pI~~v~~~~ 243 (443)
T PTZ00141 168 IQKEVCGYLKKVGYNAEK--VPFVPISGFEGDNMIEKSDKMPWYKG-KTLVEAL-DTMEPPKRPVDKPLRLPLQGVYKIG 243 (443)
T ss_pred HHHHHHHHHHHCCCCCCC--CEEEECCCCCCCCCCCCCCCCCEEHH-HHHHHHH-HCCCCCCCCCCCCCCCCEEEEEEEC
T ss_conf 999999999973999566--61896341246653246655644235-6899998-5689875655566534050388616
Q ss_pred CCCEEEEEEECCCCCCCCCEEEEECCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCC--CCC--CCCCCCCEECCC
Q ss_conf 7734999996078051598899960578501211455301103665344411254554322--223--321012211055
Q gi|254780233|r 231 FLGRIVTGRIHSGTIKSNQNIKALSPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSI--AGL--VKATVADTFCDP 306 (624)
Q Consensus 231 y~Gria~gRV~sGtlk~Gd~V~vl~~~g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIvaI--aGl--~~~~iGDTL~~~ 306 (624)
..|++..|||.||+++.||+|.++ |++. ..+|..|..+. .++++|.|||.|++ .++ .++..|+.||++
T Consensus 244 g~gtvv~G~V~sG~i~~Gd~v~i~-Ps~~---~~~VksI~~~~----~~v~~A~aG~~V~i~L~~i~~~dI~rG~Vl~~~ 315 (443)
T PTZ00141 244 GIGTVPVGRVETGILKAGMVLTFA-PSAV---TTECKSVEMHH----EVVEEARPGDNVGFNVKNVSTKDIKRGHVASDS 315 (443)
T ss_pred CCCEEEEEEEEEEEEECCCEEEEC-CCCC---EEEEEEEEECC----CEECEECCCCEEEEECCCCCHHHCCCCEEEECC
T ss_conf 873278767615699569789987-7998---89998999899----690878699837994589865302786197669
Q ss_pred CC
Q ss_conf 65
Q gi|254780233|r 307 SI 308 (624)
Q Consensus 307 ~~ 308 (624)
.+
T Consensus 316 ~~ 317 (443)
T PTZ00141 316 KN 317 (443)
T ss_pred CC
T ss_conf 99
No 42
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=0 Score=337.02 Aligned_cols=283 Identities=28% Similarity=0.371 Sum_probs=231.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCC------------CCC---CEECCCCHHHHHCCCEEEEEEEEEEECCEEE
Q ss_conf 1499985468987788999999839614232------------200---0003885779870960646799999899799
Q gi|254780233|r 20 RNIAIIAHVDHGKTTLVDELLKQSGVFRDNQ------------RVS---ERVMDCNDLEKERGITILAKVTSIVWNDVRI 84 (624)
Q Consensus 20 RNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~------------~v~---~~vmD~~~~EreRGITI~a~~~~~~~~~~~i 84 (624)
=|+++||||||||+||+.+|||++|.++.+. .-. ..+||+..+|||||+||.-+...|+-+.+.+
T Consensus 8 ~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~~~ 87 (428)
T COG5256 8 LNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKYNF 87 (428)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCEEEEEEEEEEECCCCEE
T ss_conf 28999837878703445565777379798999999999986197716899985388667866668997778864377058
Q ss_pred EEECCCCCCCCHHHHHHHHHHHCEEEEEEECCCC-------CCHHHHHHHHHHHHCCCC-EEEEEECCCCCC---CCHHH
Q ss_conf 9972898754079999998742178999976878-------864789999999972997-899997543667---40256
Q gi|254780233|r 85 NIVDTPGHADFGGEVERILCMVESVVVLVDAAEG-------PMPQTKFVVGKALKIGLR-PIVVVNKVDRSD---ARADE 153 (624)
Q Consensus 85 NiiDTPGH~DF~gEVer~l~~~DgaiLvVdA~eG-------v~~QT~~vl~~A~~~~l~-~IvvINKiDr~~---a~~~~ 153 (624)
+|+|||||.||.-+.....+.+|.|+|||||..| ++.|||.+.-.|.-+|+. .||+|||||..+ .||++
T Consensus 88 tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde~rf~e 167 (428)
T COG5256 88 TIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDEERFEE 167 (428)
T ss_pred EEEECCCHHHHHHHHHCCHHHCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHH
T ss_conf 99607846778987631331336799999888983101436587516789999856975699999715666627999999
Q ss_pred HHHHHHHHHHHCCCCHHHCCHHHHHHHHHCCEECCC-CCCCCCCCCHHHHHHHHCCCCCCCCC-CCHHHCCCCCCCCCCC
Q ss_conf 899999888622673011042668878865916467-42233486413555321024542233-2000001111013677
Q gi|254780233|r 154 VINEVFDLFSALDATDAQLDFPILYGSGRFGWMSDS-SDGSRDQGMVPLLNLIVDHVPPPVIS-EGEFKMIGTILEKDPF 231 (624)
Q Consensus 154 v~~ei~dlf~~l~a~de~ld~Pv~~~Sa~~G~~~~~-~~~~~~~gl~~Lld~Ii~~iP~P~~~-e~pl~~~V~~i~~d~y 231 (624)
+.+++..|+..++.++. ++|.+++||..|--... .+...|..-..||+++ +.+..|..+ +.||++.|..+..-..
T Consensus 168 i~~~v~~l~k~~G~~~~--~v~FIPiSg~~G~Nl~~~s~~~pWY~GpTLleaL-d~~~~p~~~~d~Plr~pI~~v~~i~~ 244 (428)
T COG5256 168 IVSEVSKLLKMVGYNPK--DVPFIPISGFKGDNLTKKSENMPWYKGPTLLEAL-DQLEPPERPLDKPLRLPIQDVYSISG 244 (428)
T ss_pred HHHHHHHHHHHCCCCCC--CCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHH-HCCCCCCCCCCCCEEEEEEEEEEECC
T ss_conf 99999999997199866--7707962244677633267678672487189897-45578987778881768001787168
Q ss_pred CCEEEEEEECCCCCCCCCEEEEECCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCC--CCCC--CCCCCCCEECCCC
Q ss_conf 73499999607805159889996057850121145530110366534441125455432--2223--3210122110556
Q gi|254780233|r 232 LGRIVTGRIHSGTIKSNQNIKALSPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVS--IAGL--VKATVADTFCDPS 307 (624)
Q Consensus 232 ~Gria~gRV~sGtlk~Gd~V~vl~~~g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIva--IaGl--~~~~iGDTL~~~~ 307 (624)
.|.+.+|||.+|.|++||.|.++.. + ..+.|+.+... ..+.+.|.+||.|. +.|+ +|++.||.+++++
T Consensus 245 ~gtv~vGrVEsG~i~~g~~v~~~p~-~---~~~evksie~~----~~~~~~a~~GD~i~~~vrgv~~~dI~~Gdv~~~~~ 316 (428)
T COG5256 245 IGTVPVGRVESGVIKPGQKVTFMPA-G---VVGEVKSIEMH----HEEISQAEPGDNVGFNVRGVEKNDIRRGDVIGHSD 316 (428)
T ss_pred CCEEEEEEEEEEEECCCCEEEEECC-C---CEEEEEEEEEC----CCCCCCCCCCCEEEEEECCCCHHCCCCCCEECCCC
T ss_conf 8547887886134516987999648-6---12787645612----66544478987688983577543167765740478
Q ss_pred CCCCCC
Q ss_conf 521123
Q gi|254780233|r 308 IDEPLK 313 (624)
Q Consensus 308 ~p~~Lp 313 (624)
+|....
T Consensus 317 n~~t~~ 322 (428)
T COG5256 317 NPPTVS 322 (428)
T ss_pred CCCCCC
T ss_conf 886435
No 43
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=100.00 E-value=0 Score=340.80 Aligned_cols=282 Identities=25% Similarity=0.366 Sum_probs=208.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEE------------E---------
Q ss_conf 4999854689877889999998396142322000003885779870960646799999------------8---------
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIV------------W--------- 79 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~------------~--------- 79 (624)
||+++||||||||||+.+| ||.. +|.+++|++|||||....+.+. |
T Consensus 10 NIgtiGHVDHGKTTLv~aL---Tg~~----------tdr~~eE~~RGiTI~LG~a~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (410)
T PRK04000 10 NIGMVGHVDHGKTTLVQAL---TGVW----------TDTHSEELKRGITIRLGYADATIYKCPNCEGPEAYTTEPTCPKC 76 (410)
T ss_pred EEEEEEEECCCHHHHHHHH---HCCC----------CCCCHHHHHCCCCCCCCCCCEEHHCCCCCCCCCCEEEECCCCCC
T ss_conf 6999965178699999887---3975----------42388788648812105101001205455544413530233444
Q ss_pred -----CCEEEEEECCCCCCCCHHHHHHHHHHHCEEEEEEECCCCC-CHHHHHHHHHHHHCCCC-EEEEEECCCCCC-CCH
Q ss_conf -----9979999728987540799999987421789999768788-64789999999972997-899997543667-402
Q gi|254780233|r 80 -----NDVRINIVDTPGHADFGGEVERILCMVESVVVLVDAAEGP-MPQTKFVVGKALKIGLR-PIVVVNKVDRSD-ARA 151 (624)
Q Consensus 80 -----~~~~iNiiDTPGH~DF~gEVer~l~~~DgaiLvVdA~eGv-~~QT~~vl~~A~~~~l~-~IvvINKiDr~~-a~~ 151 (624)
..++|+|||+|||.||...+.+....+|+|||||||.||+ ||||+.|+..+..+|++ .||++||||+-+ .+.
T Consensus 77 ~~~~~~~r~is~VD~PGHe~fi~nMi~Gas~~D~alLVVaA~eG~p~pQT~EHl~i~~~lgi~~~iV~lnK~Dlv~~e~~ 156 (410)
T PRK04000 77 GSETELLRRVSFVDAPGHETLMATMLSGAALMDGAVLVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKEKA 156 (410)
T ss_pred CCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCHHHH
T ss_conf 55544331699997988799999998402126679999865778767714999999998099837999962567898999
Q ss_pred HHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCCCCCC-CCHHHCCCCCC----
Q ss_conf 5689999988862267301104266887886591646742233486413555321024542233-20000011110----
Q gi|254780233|r 152 DEVINEVFDLFSALDATDAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPPVIS-EGEFKMIGTIL---- 226 (624)
Q Consensus 152 ~~v~~ei~dlf~~l~a~de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~P~~~-e~pl~~~V~~i---- 226 (624)
.++.+++.+++..... -+.|++++||.+| .|++.|+++|.+++|.|..+ ++||+|.|...
T Consensus 157 ~~~~~ei~~~l~g~~~----~~~piipvSa~~g-----------~~i~~L~~~l~~~~~~p~r~~~~~f~m~Vdr~F~i~ 221 (410)
T PRK04000 157 LENYEQIKEFVKGTVA----ENAPIIPVSALHG-----------VNIDALIEAIEEEIPTPERDLDKPPLMYVARSFDVN 221 (410)
T ss_pred HHHHHHHHHHHCCCCC----CCCCEEEEECCCC-----------CCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEC
T ss_conf 9999999998706765----6899999647778-----------894089998986277877788899448998888505
Q ss_pred ----CCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCEE---------ECCCCCEEEECCCCCCCCCCCCCCCCCCCC-
Q ss_conf ----136777349999960780515988999605785012---------114553011036653444112545543222-
Q gi|254780233|r 227 ----EKDPFLGRIVTGRIHSGTIKSNQNIKALSPDGALVE---------VGRVSKILAFRGIDRQPIDEAHAGDIVSIA- 292 (624)
Q Consensus 227 ----~~d~y~Gria~gRV~sGtlk~Gd~V~vl~~~g~~~~---------~~kV~~L~~~~G~~r~~v~ea~AGDIvaIa- 292 (624)
..+.+.|.+..|+|.+|+++.||+|.+.. .....+ ..||..|.. ...++++|.||+.++|.
T Consensus 222 g~Gt~~~~~~G~VvtGtv~~G~ik~GD~vei~P-g~~~~~~~~~~~~pi~t~V~si~~----~~~~~~~a~aG~~vai~~ 296 (410)
T PRK04000 222 KPGTPPEKLKGGVIGGSLIQGVLKVGDEIEIRP-GIKVEKGGKTKWEPITTKITSLRA----GGEKVEEARPGGLVGVGT 296 (410)
T ss_pred CCCCCCCCCCCCEEEEEEEEEEEECCCEEEEEC-CCCCCCCCCCCCCCCEEEEEEEEE----CCEEHHEECCCCEEEECC
T ss_conf 798655356441788899762784299899944-743345665311221269989974----783911013676585223
Q ss_pred ----CC--CCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCH
Q ss_conf ----23--32101221105565211233666654215786126865544443210
Q gi|254780233|r 293 ----GL--VKATVADTFCDPSIDEPLKAQPIDPPTVTMTFGVNDSPLAGTEGDKV 341 (624)
Q Consensus 293 ----Gl--~~~~iGDTL~~~~~p~~Lp~i~i~~Ptis~~f~vn~sP~ag~eg~~~ 341 (624)
++ .|...|+.+|.|+...|.- -.+.+.+.+.++.+.++++.+.
T Consensus 297 ~ld~~i~r~D~~rG~Vl~~pg~l~p~~------~~~~~~~~ll~~~~g~~~~~~~ 345 (410)
T PRK04000 297 KLDPALTKADALAGSVAGKPGTLPPVW------TSLTIEVHLLERVVGTKEELKV 345 (410)
T ss_pred CCCCCCCHHHHHCCCEEECCCCCCCCE------EEEEEEEEEEHHHCCCCCCCCC
T ss_conf 345553355741565543599768741------6999999998011265334666
No 44
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=100.00 E-value=0 Score=331.24 Aligned_cols=279 Identities=24% Similarity=0.341 Sum_probs=224.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCC------------CC-C----CEECCCCHHHHHCCCEEEEEEEEEEE
Q ss_conf 2431499985468987788999999839614232------------20-0----00038857798709606467999998
Q gi|254780233|r 17 MQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQ------------RV-S----ERVMDCNDLEKERGITILAKVTSIVW 79 (624)
Q Consensus 17 ~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~------------~v-~----~~vmD~~~~EreRGITI~a~~~~~~~ 79 (624)
..+=||.++||||||||||+.+|||.+|.+...+ .. . ..+||....|||+||||-.....|.+
T Consensus 5 k~~l~~~~~G~VD~GKSTliGrlL~dt~~i~~d~~~~~~~~s~~~g~~~~~~~~a~l~D~l~~EreqGiTIDva~~~F~t 84 (613)
T PRK05506 5 KTLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFST 84 (613)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHCCCEEEEEEEEEEC
T ss_conf 76258999936679788898899998199678999999999998189888603544214888898559716856778843
Q ss_pred CCEEEEEECCCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCCC---CCHHHHH
Q ss_conf 997999972898754079999998742178999976878864789999999972997-899997543667---4025689
Q gi|254780233|r 80 NDVRINIVDTPGHADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLR-PIVVVNKVDRSD---ARADEVI 155 (624)
Q Consensus 80 ~~~~iNiiDTPGH~DF~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~-~IvvINKiDr~~---a~~~~v~ 155 (624)
+.++++|+|||||.+|.--+-.+.+-+|.|||||||.+|+++||++|...+..+|++ +||+|||||.-+ .+|+++.
T Consensus 85 ~~r~~~i~DaPGH~~y~rNMitgAs~ad~AilliDa~~G~~~QTrrH~~i~~llGI~~iivaVNKMDlV~y~~~~f~~I~ 164 (613)
T PRK05506 85 PKRKFIVADTPGHEQYTRNMATGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHIVLAVNKMDLVDYDQEVFDRIV 164 (613)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHH
T ss_conf 87059994289679899899987865387999998887951551899999987298759999852012478199999999
Q ss_pred HHHHHHHHHCCCCHHHCCHHHHHHHHHCC--EECCCCCCCCCCCCHHHHHHHHCCCCCCCC-CCCHHHCCCCCCCCCCCC
Q ss_conf 99998886226730110426688788659--164674223348641355532102454223-320000011110136777
Q gi|254780233|r 156 NEVFDLFSALDATDAQLDFPILYGSGRFG--WMSDSSDGSRDQGMVPLLNLIVDHVPPPVI-SEGEFKMIGTILEKDPFL 232 (624)
Q Consensus 156 ~ei~dlf~~l~a~de~ld~Pv~~~Sa~~G--~~~~~~~~~~~~gl~~Lld~Ii~~iP~P~~-~e~pl~~~V~~i~~d~y~ 232 (624)
+++.++...++..+ +.+++.||++| ++......+|..| ..||+. ++.++.+.. .+.||++.|..+.....-
T Consensus 165 ~~~~~~~~~l~~~~----~~~IPISAl~GDNVv~~S~~m~WY~G-ptLle~-Le~~~~~~~~~~~~fR~PVQ~V~Rp~~d 238 (613)
T PRK05506 165 ADYLAFAAKLGLTD----VTFIPISALKGDNVVTRSARTPWYEG-PSLLEH-LETVEIAGDRNLKDFRFPVQYVNRPNLD 238 (613)
T ss_pred HHHHHHHHHCCCCC----CEEEECCCCCCCEEEECCCCCCCCCC-CCHHHH-HHCCCCCCCCCCCCCEEEEEEEECCCCC
T ss_conf 99999996579988----75996735748747678878866678-658999-7377878664456712111787447875
Q ss_pred CEEEEEEECCCCCCCCCEEEEECCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC--CCEECCCCCC
Q ss_conf 3499999607805159889996057850121145530110366534441125455432222332101--2211055652
Q gi|254780233|r 233 GRIVTGRIHSGTIKSNQNIKALSPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSIAGLVKATV--ADTFCDPSID 309 (624)
Q Consensus 233 Gria~gRV~sGtlk~Gd~V~vl~~~g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIvaIaGl~~~~i--GDTL~~~~~p 309 (624)
.|.-.|||.||++++||+|.++ |+|+ ..+|.+|+.+.+ ++++|.||+-|+++=-+++.+ ||.|++++++
T Consensus 239 fRgyaGrI~sG~ikvGD~V~vl-PSg~---~s~Vk~I~~~~~----~~~~A~agqSVtltL~dEIDISRGDvI~~~~~~ 309 (613)
T PRK05506 239 FRGFAGTVASGVVRPGDEVVVL-PSGK---TSRVKRIVTYDG----ELDEAFAGQAVTLTLADEIDISRGDMLARADNP 309 (613)
T ss_pred EEEEEEEECCEEECCCCEEEEC-CCCC---EEEEEEEECCCC----CHHHCCCCCEEEEEECCCEECCCCCEEECCCCC
T ss_conf 0579999841367269989987-8998---799999986899----764133898089997462643798689648998
No 45
>TIGR00483 EF-1_alpha translation elongation factor EF-1, subunit alpha; InterPro: IPR004539 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome , , . EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding , . EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). This entry represents EF1A proteins found primarily in eukaryotic (eEF1A) and archaeal (aEF1A) organisms, these proteins being more closely related to one another than to EF1A (or EF-Tu) found in bacteria (IPR004541 from INTERPRO). More information about these proteins can be found at Protein of the Month: Elongation Factors . ; GO: 0003746 translation elongation factor activity, 0005525 GTP binding, 0006414 translational elongation, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=335.41 Aligned_cols=273 Identities=29% Similarity=0.416 Sum_probs=220.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCCCC------CCCC---------EECCCCHHHHHCCCEEEEEEEEEEECCEE
Q ss_conf 31499985468987788999999839614232------2000---------00388577987096064679999989979
Q gi|254780233|r 19 IRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQ------RVSE---------RVMDCNDLEKERGITILAKVTSIVWNDVR 83 (624)
Q Consensus 19 IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~------~v~~---------~vmD~~~~EreRGITI~a~~~~~~~~~~~ 83 (624)
.=|+|+|||||||||||+.+|||+||.|.... +.+| .|||....||||||||--+..-|+...|.
T Consensus 7 ~~Nv~~IGHVD~GKST~~G~Lly~~G~I~~~~~eK~~kEa~e~GK~~F~fa~V~D~Lk~ERERGvTID~A~~KFeT~KY~ 86 (445)
T TIGR00483 7 HINVAFIGHVDHGKSTLVGRLLYKAGAIDEQLLEKLKKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHKKFETDKYE 86 (445)
T ss_pred EEEEEEEEEEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCEE
T ss_conf 24489982540885026677775428965899999987575518730367654311000001562243344541788516
Q ss_pred EEEECCCCCCCCHHHHHHHHHH------HCEEEEEEECCCC-------CCHHHHHHHHHHHHCCCC-EEEEEECCCCC--
Q ss_conf 9997289875407999999874------2178999976878-------864789999999972997-89999754366--
Q gi|254780233|r 84 INIVDTPGHADFGGEVERILCM------VESVVVLVDAAEG-------PMPQTKFVVGKALKIGLR-PIVVVNKVDRS-- 147 (624)
Q Consensus 84 iNiiDTPGH~DF~gEVer~l~~------~DgaiLvVdA~eG-------v~~QT~~vl~~A~~~~l~-~IvvINKiDr~-- 147 (624)
++|||+|||.|| +-|| +|+|+||||..++ ++||||.|.-.|.-+|+. .||+|||||+-
T Consensus 87 ~TivDcPGHRDF------iKNMITGaSQADaAvLv~~v~~~~~~ag~~~~pQTrEH~~La~TLGi~QliVAiNKMD~V~y 160 (445)
T TIGR00483 87 VTIVDCPGHRDF------IKNMITGASQADAAVLVVAVDDGEFEAGISVQPQTREHVFLARTLGINQLIVAINKMDSVNY 160 (445)
T ss_pred EEEEECCCCCHH------HHHCCCCCCCCCEEEEEEECCCCCCCCCEEECCCCHHHHHHHHHHCCEEEEEEECCCCCEEC
T ss_conf 999846987013------43112667512427999952544102401217860577888775032045333102461002
Q ss_pred -CCCHHHHHHHHHH-HHHHCCCCHHHCCHHHHHHHHHCC--EECCCCCCCCCCCC-----------HHHHHHHHCCCCCC
Q ss_conf -7402568999998-886226730110426688788659--16467422334864-----------13555321024542
Q gi|254780233|r 148 -DARADEVINEVFD-LFSALDATDAQLDFPILYGSGRFG--WMSDSSDGSRDQGM-----------VPLLNLIVDHVPPP 212 (624)
Q Consensus 148 -~a~~~~v~~ei~d-lf~~l~a~de~ld~Pv~~~Sa~~G--~~~~~~~~~~~~gl-----------~~Lld~Ii~~iP~P 212 (624)
..+|+++.+++-. |+-.+|.+-++++| ++.||.+| ++..+...+|..|- ..|+|++ |.+.+|
T Consensus 161 d~~~f~~~~~~~s~~l~K~vGY~p~~v~F--iP~s~~~GDN~~~~s~~~PWYkgwe~e~~agvv~G~TL~EA~-D~~~~P 237 (445)
T TIGR00483 161 DEEEFEALKKEVSEQLLKKVGYKPDEVPF--IPISAFEGDNVIKKSENTPWYKGWEKETKAGVVKGKTLLEAL-DALEPP 237 (445)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCCE--EEECCCCCCCHHHHHCCCCCCCCCCCCCCCEEECCCHHHHHH-HHHCCC
T ss_conf 77899999999999899874887561232--540354676134330388852552200023022184589887-310478
Q ss_pred CCC-CCHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 233-2000001111013677734999996078051598899960578501211455301103665344411254554322
Q gi|254780233|r 213 VIS-EGEFKMIGTILEKDPFLGRIVTGRIHSGTIKSNQNIKALSPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSI 291 (624)
Q Consensus 213 ~~~-e~pl~~~V~~i~~d~y~Gria~gRV~sGtlk~Gd~V~vl~~~g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIvaI 291 (624)
..+ +.||+..+.+++.-..+|.+-+|||++|.|++|+.|..- |-|-. +.|.+|-.+ .+.+++|.+||.+..
T Consensus 238 ~kp~d~PLRiPiQDVY~I~GvGTVPVGRVEtGvl~~G~~V~F~-PAGVs---gEVKSiEMH----HE~i~~a~PGDNiGF 309 (445)
T TIGR00483 238 EKPVDKPLRIPIQDVYSITGVGTVPVGRVETGVLKPGDKVVFE-PAGVS---GEVKSIEMH----HEQIEQAEPGDNIGF 309 (445)
T ss_pred CCCCCCCCCCCCCCEEEECCEEECCCCCEECCEEECCCEEEEC-CCCCC---CCEEEEEEC----CCCCCCCCCCCCCCE
T ss_conf 6434677305530035753366223460202426448878963-78843---121367611----343667777874122
Q ss_pred --C--CCCCCCCCCEECCCCC
Q ss_conf --2--2332101221105565
Q gi|254780233|r 292 --A--GLVKATVADTFCDPSI 308 (624)
Q Consensus 292 --a--Gl~~~~iGDTL~~~~~ 308 (624)
- +.++++-||.-.++++
T Consensus 310 NVrgVs~kdIrRGdV~G~~~N 330 (445)
T TIGR00483 310 NVRGVSKKDIRRGDVAGHPDN 330 (445)
T ss_pred EECCCCCCCCCCCCCCCCCCC
T ss_conf 001556022001430378887
No 46
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=100.00 E-value=0 Score=323.07 Aligned_cols=169 Identities=25% Similarity=0.333 Sum_probs=143.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEE--------------EEECCEEEEE
Q ss_conf 49998546898778899999983961423220000038857798709606467999--------------9989979999
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTS--------------IVWNDVRINI 86 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~--------------~~~~~~~iNi 86 (624)
||+|+||||||||||+++|++.+++ ..+|++++||||||||.....+ ..|++++|||
T Consensus 2 NV~iiGHVDhGKTTL~~~L~~~~~~---------~~~D~~~eE~eRGITi~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~ 72 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIAST---------AAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITL 72 (192)
T ss_pred EEEEEEECCCCHHHHHHHHHHHCCC---------HHHHCCHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCEEEEE
T ss_conf 8999976178999999999833350---------1221358899779716710013785144221123234677458999
Q ss_pred ECCCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCC-----CHHHHHHHHHHH
Q ss_conf 728987540799999987421789999768788647899999999729978999975436674-----025689999988
Q gi|254780233|r 87 VDTPGHADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDA-----RADEVINEVFDL 161 (624)
Q Consensus 87 iDTPGH~DF~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a-----~~~~v~~ei~dl 161 (624)
||||||.||..++.++++++|+|+|||||.+|+|+||+.+|+.|..+++|.||+|||||+.+. +++++..++..+
T Consensus 73 IDtPGH~df~~~~~~g~~~~D~ailvVda~~G~~~QT~eh~~~~~~~~~~~iv~iNK~D~v~~~~~~~~~~~i~~~l~~~ 152 (192)
T cd01889 73 VDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKT 152 (192)
T ss_pred EECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 87798388998888887432652799987888878999999999985899799997412788157799999999999999
Q ss_pred HHHCCCCHHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCCCC
Q ss_conf 8622673011042668878865916467422334864135553210245422
Q gi|254780233|r 162 FSALDATDAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPPV 213 (624)
Q Consensus 162 f~~l~a~de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~P~ 213 (624)
+..++. -+.|+++.||++| .|+..|++.|.+.+|+|.
T Consensus 153 l~~~~~----~~~~iipiSA~~G-----------~gi~eL~~~i~~lip~p~ 189 (192)
T cd01889 153 LEKTRF----KNSPIIPVSAKPG-----------GGEAELGKDLNNLIVLPL 189 (192)
T ss_pred HHHCCC----CCCEEEEEECCCC-----------CCHHHHHHHHHHHCCCCC
T ss_conf 865389----9984999578988-----------498999988876189996
No 47
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=100.00 E-value=1.4e-45 Score=317.88 Aligned_cols=189 Identities=30% Similarity=0.396 Sum_probs=159.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCC--CC----C---------CEECCCCHHHHHCCCEEEEEEEEEEECCEEEE
Q ss_conf 499985468987788999999839614232--20----0---------00038857798709606467999998997999
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQ--RV----S---------ERVMDCNDLEKERGITILAKVTSIVWNDVRIN 85 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~--~v----~---------~~vmD~~~~EreRGITI~a~~~~~~~~~~~iN 85 (624)
||+++||||||||||+++||+.+|.+.+.. +. . ..+||++++||||||||.++...|+|+++++|
T Consensus 1 Ni~iiGHvD~GKSTL~g~lL~~~g~i~~~~~~k~~~~~~~~gk~s~~~a~~lD~~~~ErerGiTI~~~~~~f~~~~~~~~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHCCCCEEEEEEEEEECCEEEE
T ss_conf 98999668998999999999985997688999999999854998750556613898798589258858999984993699
Q ss_pred EECCCCCCCCHHHHHHHHHHHCEEEEEEECCCC-------CCHHHHHHHHHHHHCCCC-EEEEEECCCCCC-----CCHH
Q ss_conf 972898754079999998742178999976878-------864789999999972997-899997543667-----4025
Q gi|254780233|r 86 IVDTPGHADFGGEVERILCMVESVVVLVDAAEG-------PMPQTKFVVGKALKIGLR-PIVVVNKVDRSD-----ARAD 152 (624)
Q Consensus 86 iiDTPGH~DF~gEVer~l~~~DgaiLvVdA~eG-------v~~QT~~vl~~A~~~~l~-~IvvINKiDr~~-----a~~~ 152 (624)
|||||||.||.+++.++++.+|.|||||||.+| +++||++++..|..+|++ .||+|||||+.. .+|+
T Consensus 81 iiDtPGH~df~~~mi~g~~~ad~ailvvda~~g~~e~g~~~~~QTreH~~l~~~lGik~iIVavNKMD~v~~~y~~~rf~ 160 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSEERYD 160 (219)
T ss_pred EEECCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHH
T ss_conf 98789726678899987753166899998576751036677765999999999849974899998753688652599999
Q ss_pred HHHHHHHHHHHHCCCCHHHCCHHHHHHHHHCCEE--CCCCCCCCCCCCHHHHHHHHCCCCCCC
Q ss_conf 6899999888622673011042668878865916--467422334864135553210245422
Q gi|254780233|r 153 EVINEVFDLFSALDATDAQLDFPILYGSGRFGWM--SDSSDGSRDQGMVPLLNLIVDHVPPPV 213 (624)
Q Consensus 153 ~v~~ei~dlf~~l~a~de~ld~Pv~~~Sa~~G~~--~~~~~~~~~~gl~~Lld~Ii~~iP~P~ 213 (624)
++.+++.+++..++.+.++ +|+++.||+.|.- ......+|..| ..|++++ +.+|+|.
T Consensus 161 ~i~~~~~~~l~~~g~~~~~--~~~IPiSa~~GdNi~~~s~~m~WY~G-ptLl~~L-d~~~~p~ 219 (219)
T cd01883 161 EIKKELSPFLKKVGYNPKD--VPFIPISGLTGDNLIEKSENMPWYKG-PTLLEAL-DSLEPPE 219 (219)
T ss_pred HHHHHHHHHHHHCCCCCCC--CEEEEEECCCCCCCCCCCCCCCCCCC-CHHHHHH-HCCCCCC
T ss_conf 9999999999982999566--15999336766304667889989878-1699998-4789989
No 48
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=100.00 E-value=1.4e-44 Score=311.81 Aligned_cols=254 Identities=26% Similarity=0.322 Sum_probs=201.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEE-CCEEEEEECCCCCCCCHHHHH
Q ss_conf 9998546898778899999983961423220000038857798709606467999998-997999972898754079999
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVW-NDVRINIVDTPGHADFGGEVE 100 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~-~~~~iNiiDTPGH~DF~gEVe 100 (624)
|+..||||||||||+.+| ||.- .|..++||+|||||--.-+.+.. .+..+.|||.|||..|.--.-
T Consensus 3 igTAGHVDHGKTsLvkAL---TG~d----------tDRL~EEk~RGiTIdLGFA~~~l~~g~~~g~VDVPGHErFIknMl 69 (615)
T PRK10512 3 IATAGHVDHGKTTLLQAI---TGVN----------ADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNML 69 (615)
T ss_pred EEEECCCCCCHHHHHHHH---HCCC----------CCCCHHHHHHCCEEEECEEEEECCCCCEEEEEECCCHHHHHHHHH
T ss_conf 996365477899999998---6888----------656977897187277130755579997899987998389999997
Q ss_pred HHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCE-EEEEECCCCCCC-CHHHHHHHHHHHHHHCCCCHHHCCHHHHH
Q ss_conf 9987421789999768788647899999999729978-999975436674-02568999998886226730110426688
Q gi|254780233|r 101 RILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRP-IVVVNKVDRSDA-RADEVINEVFDLFSALDATDAQLDFPILY 178 (624)
Q Consensus 101 r~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~-IvvINKiDr~~a-~~~~v~~ei~dlf~~l~a~de~ld~Pv~~ 178 (624)
....-+|.|+|||+|.|||||||+.|+..+..+|++. ||+|||+|+-+. +.+.+.+++.+++..... -+.|+++
T Consensus 70 AG~~gid~vlLVVAAdeGvMPQT~EHl~Il~lLgi~~giV~lTK~Dlvd~e~l~~v~~ei~~~l~~t~l----~~~pi~~ 145 (615)
T PRK10512 70 AGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIDEVRRQVLEVLREYGF----AEAKLFV 145 (615)
T ss_pred HHHHHCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCC----CCCCEEE
T ss_conf 446437889999988998772379999999981998289999776568979999999999999844787----6797520
Q ss_pred HHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCC
Q ss_conf 78865916467422334864135553210245422332000001111013677734999996078051598899960578
Q gi|254780233|r 179 GSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPPVISEGEFKMIGTILEKDPFLGRIVTGRIHSGTIKSNQNIKALSPDG 258 (624)
Q Consensus 179 ~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~P~~~e~pl~~~V~~i~~d~y~Gria~gRV~sGtlk~Gd~V~vl~~~g 258 (624)
+|+.+| .|++.|.++|.+..+.+...+++|++.|-.+..=...|.+.+|.+.||+++.||+|.++ |.+
T Consensus 146 vSa~tg-----------~Gi~~L~~~L~~l~~~~~~~~~~fRL~IDRvFsvkG~GTVVTGTl~sG~v~~GD~l~i~-P~~ 213 (615)
T PRK10512 146 TAATEG-----------RGIDALREHLLQLPEREHASQHRFRLAIDRAFTVKGAGLVVTGTALSGEVKVGDTLWLT-GVN 213 (615)
T ss_pred CCCCCC-----------CCHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEEECCEECCCCEEEEC-CCC
T ss_conf 145666-----------79999999998625566676776178831189626885699999814714269989986-999
Q ss_pred CCEEECCCCCEEEECCCCCCCCCCCCCCCCCCC--CC-C--CCCCCCCEECCCCCCCC
Q ss_conf 501211455301103665344411254554322--22-3--32101221105565211
Q gi|254780233|r 259 ALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSI--AG-L--VKATVADTFCDPSIDEP 311 (624)
Q Consensus 259 ~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIvaI--aG-l--~~~~iGDTL~~~~~p~~ 311 (624)
. ..||..|..+. .++++|.||+-||+ +| + +++.-||.||+++.-.+
T Consensus 214 ~---~~rVR~iQ~h~----~~v~~a~aG~R~AlNL~G~v~~~~i~RGd~L~~~~~~~~ 264 (615)
T PRK10512 214 K---PMRVRALHAQN----QPTETAHAGQRIALNIAGDAEKEQINRGDWLLADAPPEP 264 (615)
T ss_pred C---EEEEEEHHHCC----CCCCEECCCCEEEEEECCCCCHHHCCCCCEEECCCCCCC
T ss_conf 6---79873477679----815573277459996125446723178668923888775
No 49
>KOG0460 consensus
Probab=100.00 E-value=1.4e-45 Score=319.62 Aligned_cols=293 Identities=26% Similarity=0.381 Sum_probs=223.4
Q ss_pred CCCCCCCCC-EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCC---EECCCCHHHHHCCCEEEEEEEEEEECCEEEEEE
Q ss_conf 346802431-4999854689877889999998396142322000---003885779870960646799999899799997
Q gi|254780233|r 12 GRLGYMQIR-NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSE---RVMDCNDLEKERGITILAKVTSIVWNDVRINIV 87 (624)
Q Consensus 12 ~~~~~~~IR-NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~---~vmD~~~~EreRGITI~a~~~~~~~~~~~iNii 87 (624)
+.+...+.- ||+-|||||||||||+-++ +.+..+.|...- --.|.-++||.|||||.+..+-++....++--+
T Consensus 46 ~~f~R~KPHvNVGTIGHVDHGKTTLTaAI---Tkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~ 122 (449)
T KOG0460 46 AVFVRDKPHVNVGTIGHVDHGKTTLTAAI---TKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHT 122 (449)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHH---HHHHHHCCCCCCCCHHHHHCCHHHHHCCCEEEEEEEEEECCCCCCCCC
T ss_conf 44125798652033003357720089999---999975165010547665338266535616764356642244300147
Q ss_pred CCCCCCCCHHHHHHHHHH------HCEEEEEEECCCCCCHHHHHHHHHHHHCCCCE-EEEEECCCCC-CC-CHHHHHHHH
Q ss_conf 289875407999999874------21789999768788647899999999729978-9999754366-74-025689999
Q gi|254780233|r 88 DTPGHADFGGEVERILCM------VESVVVLVDAAEGPMPQTKFVVGKALKIGLRP-IVVVNKVDRS-DA-RADEVINEV 158 (624)
Q Consensus 88 DTPGH~DF~gEVer~l~~------~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~-IvvINKiDr~-~a-~~~~v~~ei 158 (624)
|||||+|| +.|| .|||||||.|.+|+|||||.++-.|.+.|++. +|||||.|.- ++ ..+-|.-|+
T Consensus 123 DCPGHADY------IKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~ 196 (449)
T KOG0460 123 DCPGHADY------IKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLELVEMEI 196 (449)
T ss_pred CCCCHHHH------HHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 89963889------987532732367349999747898840688888898728764999971202468889999999999
Q ss_pred HHHHHHCCCCHHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCCCCCC-CCHHHCCCCCCCCCCCCCEEEE
Q ss_conf 988862267301104266887886591646742233486413555321024542233-2000001111013677734999
Q gi|254780233|r 159 FDLFSALDATDAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPPVIS-EGEFKMIGTILEKDPFLGRIVT 237 (624)
Q Consensus 159 ~dlf~~l~a~de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~P~~~-e~pl~~~V~~i~~d~y~Gria~ 237 (624)
.+|+.+.+.+-+ +.||+.+||+...-...++-.. ..+..|||++-+|+|.|..+ +.||.|.|-++.+-+.+|.+++
T Consensus 197 RElLse~gf~Gd--~~PvI~GSAL~ALeg~~peig~-~aI~kLldavDsyip~P~R~~~~pFl~pie~vfsI~GRGTVvt 273 (449)
T KOG0460 197 RELLSEFGFDGD--NTPVIRGSALCALEGRQPEIGL-EAIEKLLDAVDSYIPTPERDLDKPFLLPIEDVFSIPGRGTVVT 273 (449)
T ss_pred HHHHHHCCCCCC--CCCEEECCHHHHHCCCCCCCCH-HHHHHHHHHHHCCCCCCCCCCCCCCEEEHHHEEEECCCCEEEE
T ss_conf 999997299988--7876632012222278842057-9999999987515898521357774043002466158834998
Q ss_pred EEECCCCCCCCCEEEEECCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCC--CCC--CCCCCCCEECCCCCCCCCC
Q ss_conf 996078051598899960578501211455301103665344411254554322--223--3210122110556521123
Q gi|254780233|r 238 GRIHSGTIKSNQNIKALSPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSI--AGL--VKATVADTFCDPSIDEPLK 313 (624)
Q Consensus 238 gRV~sGtlk~Gd~V~vl~~~g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIvaI--aGl--~~~~iGDTL~~~~~p~~Lp 313 (624)
||+.+|+||+|+++-++..+.. .++ .|+.|..|+ ..+++|.|||.+.+ -|+ +++.-|-.+|.|+...+..
T Consensus 274 GrlERG~lKkG~e~eivG~~~~-lkt-tvtgiemF~----K~ld~a~AGDn~G~LlRGik~~dvkRGmvl~~pGsvk~~~ 347 (449)
T KOG0460 274 GRLERGVLKKGDEVEIVGHNKT-LKT-TVTGIEMFR----KSLDEAQAGDNLGALLRGIKREDVKRGMVLAKPGSVKPHN 347 (449)
T ss_pred EEEEECCCCCCCEEEEECCCCC-EEE-EEEHHHHHH----HHHHHCCCCCCEEHHHHCCCHHHHHCCCEEECCCCCCCCC
T ss_conf 7785022146887898506764-046-862699998----7777501556201645147787874452873688654031
Q ss_pred CCCCCCCCE
Q ss_conf 366665421
Q gi|254780233|r 314 AQPIDPPTV 322 (624)
Q Consensus 314 ~i~i~~Pti 322 (624)
.++..-..+
T Consensus 348 k~ea~~YiL 356 (449)
T KOG0460 348 KFEAQLYIL 356 (449)
T ss_pred EEEEEEEEE
T ss_conf 125999998
No 50
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.2e-45 Score=314.95 Aligned_cols=290 Identities=27% Similarity=0.377 Sum_probs=220.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCE---ECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCH
Q ss_conf 149998546898778899999983961423220000---03885779870960646799999899799997289875407
Q gi|254780233|r 20 RNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSER---VMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFG 96 (624)
Q Consensus 20 RNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~---vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~ 96 (624)
=||+.|||||||||||+-++ |+.+.+.+...-+ -.|..|+||+|||||.+..+-++..+.++-.+|+|||+|+.
T Consensus 13 VNigtiGHvdHGKTTLtaAi---t~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYv 89 (394)
T COG0050 13 VNVGTIGHVDHGKTTLTAAI---TTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYV 89 (394)
T ss_pred EEEEEECCCCCCHHHHHHHH---HHHHHHHCCCCCCCHHHHHCCCHHHHCCCEECCCEEEEECCCCEEEECCCCCHHHHH
T ss_conf 47878614247635289999---999986324010333443048267645725401005886388148861689748999
Q ss_pred HHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCCC--CCHHHHHHHHHHHHHHCCCCHHHCC
Q ss_conf 9999998742178999976878864789999999972997-899997543667--4025689999988862267301104
Q gi|254780233|r 97 GEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLR-PIVVVNKVDRSD--ARADEVINEVFDLFSALDATDAQLD 173 (624)
Q Consensus 97 gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~-~IvvINKiDr~~--a~~~~v~~ei~dlf~~l~a~de~ld 173 (624)
--......-.|||||||+|.+|||||||.++-.|.+.|+| ++||+||.|.-+ ...+.|..|+.||+.+.+..-+ +
T Consensus 90 KNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~gd--~ 167 (394)
T COG0050 90 KNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFPGD--D 167 (394)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCC--C
T ss_conf 98764077537628999847899986056420123428857999974223668689999999999999997399987--7
Q ss_pred HHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCCCCCC-CCHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEE
Q ss_conf 266887886591646742233486413555321024542233-2000001111013677734999996078051598899
Q gi|254780233|r 174 FPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPPVIS-EGEFKMIGTILEKDPFLGRIVTGRIHSGTIKSNQNIK 252 (624)
Q Consensus 174 ~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~P~~~-e~pl~~~V~~i~~d~y~Gria~gRV~sGtlk~Gd~V~ 252 (624)
.|++.+||+..... +..+...+..|+|++-+|+|.|..+ +.||.|.|-++.+-+.+|.+++|||.+|+|+.|+.+.
T Consensus 168 ~Pii~gSal~ale~---~~~~~~~i~eLm~avd~yip~Per~~dkPflmpvEdvfsIsgrgtvvtGrVeRG~lkvg~eve 244 (394)
T COG0050 168 TPIIRGSALKALEG---DAKWEAKIEELMDAVDSYIPTPERDIDKPFLMPVEDVFSISGRGTVVTGRVERGILKVGEEVE 244 (394)
T ss_pred CCEEECHHHHHHCC---CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEEEEEEEECCCCEEE
T ss_conf 63341123331037---721678999999999854899986556652010100689757516898788401241587799
Q ss_pred EECCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCC--CCC--CCCCCCCEECCCCCCCCCCCCCCCCCCEE
Q ss_conf 960578501211455301103665344411254554322--223--32101221105565211233666654215
Q gi|254780233|r 253 ALSPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSI--AGL--VKATVADTFCDPSIDEPLKAQPIDPPTVT 323 (624)
Q Consensus 253 vl~~~g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIvaI--aGl--~~~~iGDTL~~~~~p~~Lp~i~i~~Ptis 323 (624)
+..-... .+ ..++.+-.| +...+++.|||.|.+ -|. +++.-|..|+.|+...|-..++-.-.++|
T Consensus 245 ivG~~~~-~k-ttvtgvemf----rk~ld~~~aGdnvg~llRg~~r~~veRGqvLakpgsi~ph~kfeaevyvL~ 313 (394)
T COG0050 245 IVGIKET-QK-TTVTGVEMF----RKLLDEGQAGDNVGVLLRGVKREDVERGQVLAKPGSIKPHTKFEAEVYVLS 313 (394)
T ss_pred EECCCCC-CE-EEEEHHHHH----HHHHHCCCCCCCCCEEEEECCCCCEECCEEECCCCCCCCCCEEEEEEEEEE
T ss_conf 7256455-30-488769999----988740466898526897211133531207606886666521048999996
No 51
>pfam00009 GTP_EFTU Elongation factor Tu GTP binding domain. This domain contains a P-loop motif, also found in several other families such as pfam00071, pfam00025 and pfam00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains.
Probab=100.00 E-value=8.4e-45 Score=313.59 Aligned_cols=182 Identities=39% Similarity=0.537 Sum_probs=162.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCC-EECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCC
Q ss_conf 24314999854689877889999998396142322000-00388577987096064679999989979999728987540
Q gi|254780233|r 17 MQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSE-RVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADF 95 (624)
Q Consensus 17 ~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~-~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF 95 (624)
++||||||+||++||||||+++||++++.+.+.+.... ..+|+++.||||||||.+..+++.|++++|||+|||||.||
T Consensus 1 ~~~rnVaivG~~n~GKSTL~n~Ll~~~~~i~~~~~~~~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~i~~iDtPGh~~f 80 (185)
T pfam00009 1 KRHRNIGIIGHVDHGKTTLTDALLYVTGAIDKRGEVKQEGELDRLKEERERGITIKIAAVSFETKKRHINIIDTPGHVDF 80 (185)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEEEEEEEECCCEEEEEECCCCCCH
T ss_conf 99678999938994499999999715487654643100333365588885782698769999608936899989987143
Q ss_pred HHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC-CCCHHHHHHHHHHHHHHC-CCCHHHCC
Q ss_conf 7999999874217899997687886478999999997299789999754366-740256899999888622-67301104
Q gi|254780233|r 96 GGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRS-DARADEVINEVFDLFSAL-DATDAQLD 173 (624)
Q Consensus 96 ~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~-~a~~~~v~~ei~dlf~~l-~a~de~ld 173 (624)
..++.++++.+|+|+|||||.+|+++||+.+|+.+.+.++|.|++|||||+. .+++.++.+++.+.+... ....+ .
T Consensus 81 ~~~~~~~l~~aD~~vlVvda~~G~~~qt~~~~~~~~~~~~p~iv~vNKiD~v~~~~~~~~~~e~~~~ll~~~~~~~~--~ 158 (185)
T pfam00009 81 TKEMIRGAAQADGAILVVDAVEGVMPQTREHLLLAKQLGVPIIVFINKMDRVDDAELDEVVEEISRELLEKYGFGGE--T 158 (185)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCC--C
T ss_conf 99999998646564299986768532309999999982898799997732777676999999999998887324899--8
Q ss_pred HHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf 26688788659164674223348641355532102454
Q gi|254780233|r 174 FPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPP 211 (624)
Q Consensus 174 ~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~ 211 (624)
.|+++.||++| .|+..|+|+|..++|+
T Consensus 159 ~pivpiSA~~G-----------~gv~~Ll~~i~~~lP~ 185 (185)
T pfam00009 159 IPVIPGSALTG-----------EGIDTLLEALDLYLPS 185 (185)
T ss_pred CEEEEEECCCC-----------CCHHHHHHHHHHHCCC
T ss_conf 86999678999-----------7989999999977859
No 52
>CHL00189 infB translation initiation factor 2; Provisional
Probab=100.00 E-value=2.9e-44 Score=309.75 Aligned_cols=250 Identities=25% Similarity=0.317 Sum_probs=202.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEE----CCEEEEEECCCCCCCCH
Q ss_conf 49998546898778899999983961423220000038857798709606467999998----99799997289875407
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVW----NDVRINIVDTPGHADFG 96 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~----~~~~iNiiDTPGH~DF~ 96 (624)
=|.|+||||||||||.|+| +.|.+.. ++. -|||-.-....+.| ++.+|+|||||||+-|+
T Consensus 274 VVTIMGHVDHGKTsLLD~i-R~t~Va~--~Ea-------------GGITQhIGAy~V~~~~~~~~~~ITFlDTPGHeAFt 337 (770)
T CHL00189 274 IVTILGHVDHGKTTLLDAI-RKTNIAQ--KEA-------------GGITQKIGAYEVEVPYKDQNQKIVFLDTPGHEAFS 337 (770)
T ss_pred EEEEECCCCCCHHHHHHHH-HCCCCCC--CCC-------------CCCCCEECEEEEEECCCCCCCEEEEECCCCHHHHH
T ss_conf 8998577257720378888-5288513--456-------------76555035299975157889758995599468899
Q ss_pred HHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHH
Q ss_conf 99999987421789999768788647899999999729978999975436674025689999988862267301104266
Q gi|254780233|r 97 GEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFPI 176 (624)
Q Consensus 97 gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~Pv 176 (624)
..-.|..++.|-|+|||+|.+||||||...+.+|...++|+||+|||||+|+|++++|..++.+. ++-..++--|.|+
T Consensus 338 ~MRaRGA~vTDIvILVVAADDGVmPQTiEAI~hakaA~VPiIVAINKiDkp~an~~rVk~eL~e~--gli~EewGGd~~~ 415 (770)
T CHL00189 338 SMRSRGANVTDIAILIVAADDGVKPQTIEAINHIQAANVPIIVAINKIDKENANIDRVKQELSKY--NLISEKWGGQTPM 415 (770)
T ss_pred HHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHC--CCCHHHCCCCEEE
T ss_conf 99862786666799999657885672799999998769988999877458998857899999986--9552223795599
Q ss_pred HHHHHHCCEECCCCCCCCCCCCHHHHHHHHCC---CCCCCCCCCHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEE
Q ss_conf 88788659164674223348641355532102---454223320000011110136777349999960780515988999
Q gi|254780233|r 177 LYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDH---VPPPVISEGEFKMIGTILEKDPFLGRIVTGRIHSGTIKSNQNIKA 253 (624)
Q Consensus 177 ~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~---iP~P~~~e~pl~~~V~~i~~d~y~Gria~gRV~sGtlk~Gd~V~v 253 (624)
++.||++| .|++.|||+|+-. .---.+++.|.++.|.-..-|..+|.+++.=|.+|||+.||.+.+
T Consensus 416 V~ISAktg-----------~gId~LLE~IlL~AEvlELkAnp~~~A~GvVIES~ldkgrG~VATvLVQ~GTLkvGD~iVa 484 (770)
T CHL00189 416 IPISALQG-----------TNIDKLLEMILLLAEIENLQADPTQLAQGTILEAHLDKTKGPVATLLVQNGTLRIGDIIVA 484 (770)
T ss_pred EEEEECCC-----------CCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCEEEEEEECCEECCCCEEEE
T ss_conf 99661679-----------8879999999999878752368898614999997651686776899995484403999998
Q ss_pred ECCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCC-CCCCEECCCCC
Q ss_conf 60578501211455301103665344411254554322223321-01221105565
Q gi|254780233|r 254 LSPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSIAGLVKA-TVADTFCDPSI 308 (624)
Q Consensus 254 l~~~g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIvaIaGl~~~-~iGDTL~~~~~ 308 (624)
|.. -+||..++-..| ..+.+|.++..|-|.|+.++ ..||.+-..++
T Consensus 485 ----G~~--~GKVRaM~Dd~G---k~vkeA~PS~PVeIlGl~~vP~AGD~f~vv~s 531 (770)
T CHL00189 485 ----GTS--LGKIRGMINSAG---NKINEAGPSSPVEIWGLSSVPATGEYFQVVNS 531 (770)
T ss_pred ----CCC--EEEEEEEECCCC---CCCCCCCCCCCEEEECCCCCCCCCCEEEEECC
T ss_conf ----363--447889889999---84455489986898778789877988999379
No 53
>PRK12312 infB translation initiation factor IF-2; Provisional
Probab=100.00 E-value=1.1e-43 Score=305.89 Aligned_cols=249 Identities=28% Similarity=0.361 Sum_probs=203.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHH-CCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHH
Q ss_conf 499985468987788999999839614232200000388577987-0960646799999899799997289875407999
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKE-RGITILAKVTSIVWNDVRINIVDTPGHADFGGEV 99 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~Ere-RGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEV 99 (624)
=|+|+||||||||||.|+|- .|.+.. .| -|||=.-....+.|++.+|+|||||||+-|+.--
T Consensus 119 vVtimGHVDHGKTsLLD~iR-~t~V~~----------------~EaGGITQhIGA~~v~~~~~~itFiDTPGHeAFt~mR 181 (610)
T PRK12312 119 IVTIMGHVDHGKTTLLDTIR-KTNVVA----------------SEAGGITQHIGAYQVEYQGKKITFIDTPGHEAFTEMR 181 (610)
T ss_pred EEEEECCCCCCHHHHHHHHH-CCCCCC----------------CCCCCCCCEECEEEEEECCCEEEEECCCCHHHHHHHH
T ss_conf 89996772577225889985-486413----------------4677664400449998679768997289679899999
Q ss_pred HHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHH
Q ss_conf 99987421789999768788647899999999729978999975436674025689999988862267301104266887
Q gi|254780233|r 100 ERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFPILYG 179 (624)
Q Consensus 100 er~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~Pv~~~ 179 (624)
.|..+++|-|+|||+|.+|+||||...+.+|...++|.||+|||||+|+|++++|..++.++ .+...++--|.|+++.
T Consensus 182 ~RGa~vtDI~iLVVaaddGv~pQTiEaI~~ak~a~vpiiVAiNKiDkp~a~~~~v~~~L~~~--g~~~E~~GGdv~~V~i 259 (610)
T PRK12312 182 ARGAKVTDIVILVVAADDGVKPQTEEAIDHAKAANVPIIVFVNKMDKPNANPDRIKNELSKY--DLVPEEWGGDTPFVYG 259 (610)
T ss_pred HCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHH--CCCHHHHCCCCEEEEE
T ss_conf 70776545799999757897742699999999759988998504467889878999999870--7667885794459990
Q ss_pred HHHCCEECCCCCCCCCCCCHHHHHHHHCC---CCCCCCCCCHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECC
Q ss_conf 88659164674223348641355532102---454223320000011110136777349999960780515988999605
Q gi|254780233|r 180 SGRFGWMSDSSDGSRDQGMVPLLNLIVDH---VPPPVISEGEFKMIGTILEKDPFLGRIVTGRIHSGTIKSNQNIKALSP 256 (624)
Q Consensus 180 Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~---iP~P~~~e~pl~~~V~~i~~d~y~Gria~gRV~sGtlk~Gd~V~vl~~ 256 (624)
||++| .|++.||++|+-. ..--.++++|.++.|--...|..+|.+++.=|.+|+|+.||.+.+
T Consensus 260 SAktg-----------~GId~LLe~IlL~AE~leLka~~~~~a~G~VIEsk~dkg~G~vatviVq~GtLk~GD~iV~--- 325 (610)
T PRK12312 260 SALKN-----------EGIDELLDSILLLAEILNLKANPNRLAIGTVIEAKLDKGKGPVATLIVQNGTLKVGDFIVA--- 325 (610)
T ss_pred ECCCC-----------CCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCEEEEEEECCEEECCCEEEE---
T ss_conf 36879-----------8999999999999998765227898606999997861687636899983587815998998---
Q ss_pred CCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCC-CCCCEECCCCC
Q ss_conf 78501211455301103665344411254554322223321-01221105565
Q gi|254780233|r 257 DGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSIAGLVKA-TVADTFCDPSI 308 (624)
Q Consensus 257 ~g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIvaIaGl~~~-~iGDTL~~~~~ 308 (624)
|. ..+||..++...| .++.+|.++.-|-|.|++.+ ..||.+...++
T Consensus 326 -G~--~~GkVRam~d~~g---~~lk~A~PS~pV~I~Gl~~vP~aGd~~~vv~~ 372 (610)
T PRK12312 326 -GS--TYGKIRSMEDENG---KKLKKALPSTPVKVSGLNEVPQAGDKFIVFND 372 (610)
T ss_pred -CC--CCCCCCEEECCCC---CCCCCCCCCCCEEEECCCCCCCCCCEEEECCC
T ss_conf -98--6686215773678---61434179985798467567567976997288
No 54
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=100.00 E-value=4.5e-43 Score=302.04 Aligned_cols=416 Identities=23% Similarity=0.315 Sum_probs=274.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEE-CCEEEEEECCCCCCCCHHHH
Q ss_conf 49998546898778899999983961423220000038857798709606467999998-99799997289875407999
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVW-NDVRINIVDTPGHADFGGEV 99 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~-~~~~iNiiDTPGH~DF~gEV 99 (624)
=|.|+||||||||||.|+| +.|.+.. ++ .-|||-.-....+.| ++.+|+|||||||.-|+..-
T Consensus 343 vvt~mghvdhgkt~lld~~-r~~~v~~--~e-------------~ggitq~iga~~v~~~~~~~itf~dtpgh~af~~mr 406 (839)
T PRK05306 343 VVTIMGHVDHGKTSLLDAI-RKTKVAA--GE-------------AGGITQHIGAYQVETENGKKITFLDTPGHEAFTAMR 406 (839)
T ss_pred EEEEECCCCCCHHHHHHHH-HCCCCCC--CC-------------CCCCCCEEEEEEEEECCCCEEEEECCCCHHHHHHHH
T ss_conf 8988577467731489998-6287535--56-------------787552223499995699879985588558899998
Q ss_pred HHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHH
Q ss_conf 99987421789999768788647899999999729978999975436674025689999988862267301104266887
Q gi|254780233|r 100 ERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFPILYG 179 (624)
Q Consensus 100 er~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~Pv~~~ 179 (624)
.|..++.|-|||||.|.+||||||...+.+|...++|+||+|||||+|+|+++.|..++.++ .+-..+|--|.+++..
T Consensus 407 ~rga~~tdi~ilvvaaddgv~pqt~eai~~~~~a~vp~ivaink~d~~~a~~~~v~~~l~~~--~~~~e~~gg~~~~v~~ 484 (839)
T PRK05306 407 ARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELTEY--GLVPEEWGGDTIFVPV 484 (839)
T ss_pred HCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHC--CCCHHHCCCCEEEEEE
T ss_conf 63576543699999777775677899999999749988999740467889889999999984--9864542894489981
Q ss_pred HHHCCEECCCCCCCCCCCCHHHHHHHHCC---CCCCCCCCCHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECC
Q ss_conf 88659164674223348641355532102---454223320000011110136777349999960780515988999605
Q gi|254780233|r 180 SGRFGWMSDSSDGSRDQGMVPLLNLIVDH---VPPPVISEGEFKMIGTILEKDPFLGRIVTGRIHSGTIKSNQNIKALSP 256 (624)
Q Consensus 180 Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~---iP~P~~~e~pl~~~V~~i~~d~y~Gria~gRV~sGtlk~Gd~V~vl~~ 256 (624)
||++| .|++.|||+|+-. +.--..++.+.++.|.-..-|..+|.+++.-|.+|||+.||.+.+
T Consensus 485 sa~~~-----------~~~~~l~e~i~l~ae~~~l~a~~~~~a~g~vie~~~~~~~g~v~t~lv~~gtl~~gd~~v~--- 550 (839)
T PRK05306 485 SAKTG-----------EGIDELLEAILLQAEVLELKANPDRPARGVVIEAKLDKGRGPVATVLVQNGTLKVGDIVVA--- 550 (839)
T ss_pred EECCC-----------CCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCCCEEEEEEECCEECCCCEEEE---
T ss_conf 51578-----------8789999999987665204479998617999987752787505899984271325998998---
Q ss_pred CCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCC-CCCCEECCCCCCC----------------CCCC---CC
Q ss_conf 78501211455301103665344411254554322223321-0122110556521----------------1233---66
Q gi|254780233|r 257 DGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSIAGLVKA-TVADTFCDPSIDE----------------PLKA---QP 316 (624)
Q Consensus 257 ~g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIvaIaGl~~~-~iGDTL~~~~~p~----------------~Lp~---i~ 316 (624)
|. .-+||..++-..| ..+.+|.++.-|-|.|+.++ ..||.+.-.++.. .+.. ..
T Consensus 551 -g~--~~g~vr~m~~~~g---~~~~~a~Ps~pv~i~G~~~~P~aGd~~~~~~~e~~a~~~~~~r~~~~~~~~~~~~~~~~ 624 (839)
T PRK05306 551 -GT--TYGRVRAMVDDNG---KRVKEAGPSTPVEILGLSGVPQAGDEFVVVEDEKKAREIAEYRQEKAREKKLARKQRVS 624 (839)
T ss_pred -EC--CCCCCEEEECCCC---CCCCCCCCCCCEEEECCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf -10--2055101588999---89871489877796056789988887785278899999999999999999875531146
Q ss_pred C----------CCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC-------------CCEEEE
Q ss_conf 6----------65421578612686554444321017889999999730283799998599-------------975999
Q gi|254780233|r 317 I----------DPPTVTMTFGVNDSPLAGTEGDKVTSRMIRDRLFKEAEGNIALKIEESSS-------------KDAFFV 373 (624)
Q Consensus 317 i----------~~Ptis~~f~vn~sP~ag~eg~~~ts~~l~~rL~ke~~~dvsL~ve~~~~-------------~~~~~v 373 (624)
. ....+.+.+- |.-.| +..-|.+.|.++.-+.+.+++-...- ++.+++
T Consensus 625 l~~~~~~~~~~~~k~l~~iiK------~Dv~G---s~eAi~~~l~~~~~~~v~~~ii~~~vG~itesDv~lA~as~a~ii 695 (839)
T PRK05306 625 LENLFAQMKEGEVKELNLILK------ADVQG---SVEALSDSLEKLSTDEVKVRIIHSGVGAITESDVTLAAASNAIII 695 (839)
T ss_pred HHHHHHHHHCCCCEEEEEEEE------CCCCC---HHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCEEE
T ss_conf 988986652267427878985------27654---399999999836887378999951677776878988985498899
Q ss_pred EECCHHHHHHHHHHHHHCCEEEECCCCEEEEEEECC------EECCEEEEEEEE----CCHHHHHHHHHHHHHCCCEECC
Q ss_conf 963645688887412334803301574489982088------260416888873----1323310789988743540104
Q gi|254780233|r 374 SGRGELQLAVLIETMRREGFELAVSRPRVVIKKEGD------SLLEPIEEVVID----VDEEHSGAVVQKMTLHKSEMIE 443 (624)
Q Consensus 374 ~GrGeLHL~IliE~mRREG~E~~vs~P~V~~k~~dg------~~lEPie~v~I~----vp~ey~G~Vi~~l~~RrG~i~~ 443 (624)
+|-=-..-. ....-+++|.++.. =.|||+-+|. .+|+|..+=.+. |-+-|- ..+.|.+-+
T Consensus 696 gFnv~~~~~-~~~~a~~~~v~i~~--y~iIY~~id~v~~~~~g~l~p~~~e~~~G~a~v~~~f~-------~~k~g~iag 765 (839)
T PRK05306 696 GFNVRADAK-ARKLAEQEGVDIRY--YSIIYDLIDDVKAAMSGMLEPEYEEEIIGQAEVREVFK-------VSKVGTIAG 765 (839)
T ss_pred EECCCCCHH-HHHHHHHCCCEEEE--ECHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEEEE-------CCCCCEEEE
T ss_conf 953888989-99999983981899--25688799999999844899732789979999745797-------588736888
Q ss_pred CCCCC-----CCEEE------EEEEECHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC-CCCC
Q ss_conf 21368-----98499------9999613356568899885327616788887053013-5787
Q gi|254780233|r 444 LRPSG-----TGRVR------LVFLSPTRGLIGYQSQLMTDTRGTAIMNRLFHSYQPH-KGEI 494 (624)
Q Consensus 444 m~~~~-----~g~~~------l~~~vP~r~l~g~~~~l~s~T~G~g~~~~~f~~Y~p~-~g~i 494 (624)
+.-.. +.++| +.|.-...-|-.|..+......|+- +-..|..|..+ .|++
T Consensus 766 c~v~~g~i~~~~~~r~~r~~~~~~~g~~~sl~~~k~~v~ev~~g~e-cgi~~~~~~~~~~gd~ 827 (839)
T PRK05306 766 CMVTEGKVKRNAKVRVLRDGVVIYEGELESLKRFKDDVKEVRAGYE-CGIGLENYNDIKEGDI 827 (839)
T ss_pred EEEEECEEECCCCEEEEECCEEEEEEEEHHHHHHHHCCCHHCCCCC-CEEEECCCCCCCCCCE
T ss_conf 9987188964992799879989996263664110203123238942-5267337357766988
No 55
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=100.00 E-value=3.8e-42 Score=295.90 Aligned_cols=262 Identities=23% Similarity=0.327 Sum_probs=190.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEE------------EC------
Q ss_conf 314999854689877889999998396142322000003885779870960646799999------------89------
Q gi|254780233|r 19 IRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIV------------WN------ 80 (624)
Q Consensus 19 IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~------------~~------ 80 (624)
.=||+.|||||||||||+.+| ||... |.+.+|++|||||....+.+. |.
T Consensus 37 ~vNIGtiGHVDHGKTTLvkAL---Tgv~t----------~r~~eE~~RgiTI~LGya~~kiykc~~~~~p~~y~~~~s~~ 103 (460)
T PTZ00327 37 TINIGTIGHVAHGKSTVVKAL---SGVKT----------VRFHREKVRNITIKLGYANAKIYKCTKCPPPACYKSYPSSK 103 (460)
T ss_pred CEEEEEECCCCCCHHHHHHHH---HCCCH----------HHCHHHHHCCCEEEECCCCEEEECCCCCCCCCCEECCCCCC
T ss_conf 218988746289899999998---67750----------10656787587212054330111365677631010146666
Q ss_pred ---------------CEEEEEECCCCCCCCHHHHHHHHHHHCEEEEEEECCCC-CCHHHHHHHHHHHHCCCC-EEEEEEC
Q ss_conf ---------------97999972898754079999998742178999976878-864789999999972997-8999975
Q gi|254780233|r 81 ---------------DVRINIVDTPGHADFGGEVERILCMVESVVVLVDAAEG-PMPQTKFVVGKALKIGLR-PIVVVNK 143 (624)
Q Consensus 81 ---------------~~~iNiiDTPGH~DF~gEVer~l~~~DgaiLvVdA~eG-v~~QT~~vl~~A~~~~l~-~IvvINK 143 (624)
..++.+||+|||.||..-.-......|+|+|||+|.|| |||||+.|+..+...|++ .|||+||
T Consensus 104 ~~~~~c~~c~~~~t~~Rh~s~VDcPGH~~l~~nmi~Ga~~mD~aiLvvaa~eg~P~pQT~EHl~~~~~~gi~~~iv~~nK 183 (460)
T PTZ00327 104 PDNPQCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNK 183 (460)
T ss_pred CCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHCHHHCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 55544555565431220489986898799999987476337679999986888876468999999997289719999535
Q ss_pred CCCCC-CCHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCCCCCC-CCHHHC
Q ss_conf 43667-4025689999988862267301104266887886591646742233486413555321024542233-200000
Q gi|254780233|r 144 VDRSD-ARADEVINEVFDLFSALDATDAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPPVIS-EGEFKM 221 (624)
Q Consensus 144 iDr~~-a~~~~v~~ei~dlf~~l~a~de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~P~~~-e~pl~~ 221 (624)
+|..+ ....+..+++.+++....+ -+.|++++||..+ .+++.|+++|.+++|.|..+ +.||.|
T Consensus 184 ~DlV~~e~~~~~~~ei~~~l~~t~~----~~~PIIpvSA~~~-----------~nid~L~~~i~~~ip~P~R~~~~~~~m 248 (460)
T PTZ00327 184 IDLIKEVQALDQYEEIRNFIDGTIA----ENAPIIPISAQLK-----------YNIDVLLEYICTQIPIPKRDLTSPPRM 248 (460)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCC----CCCCEEECCHHHC-----------CCHHHHHHHHHHHCCCCCCCCCCCCEE
T ss_conf 4455889999999999998525767----7999875654450-----------587999999997589998888999537
Q ss_pred CCCCCC--------CCCCCCEEEEEEECCCCCCCCCEEEEEC----C--CCCCEEECCCCCEEEECCCCCCCCCCCCCCC
Q ss_conf 111101--------3677734999996078051598899960----5--7850121145530110366534441125455
Q gi|254780233|r 222 IGTILE--------KDPFLGRIVTGRIHSGTIKSNQNIKALS----P--DGALVEVGRVSKILAFRGIDRQPIDEAHAGD 287 (624)
Q Consensus 222 ~V~~i~--------~d~y~Gria~gRV~sGtlk~Gd~V~vl~----~--~g~~~~~~kV~~L~~~~G~~r~~v~ea~AGD 287 (624)
.|.... .+..+|.++.|++.+|.++.||+|.+.. . .++..-..-.+++.... ....++++|.||+
T Consensus 249 ~I~rsFdIngpg~~~~~lrGtVvtGti~~G~lkvGDeIEI~PG~~~~~~~~k~~~~pi~t~I~sl~-~~~~~l~~a~pGG 327 (460)
T PTZ00327 249 IVIRSFDVNKPGEDIENLRGGVAGGSILQGVLKVGDEVEIRPGIVSKDSGGKFTCSPIRTRIVSLK-AEQNELQYAVPGG 327 (460)
T ss_pred EEEEEECCCCCCCCCCCCCCEEEEEEEEEEEEECCCEEEECCCEEEEECCCEEEEEEEEEEEEEEE-ECCCCHHHCCCCC
T ss_conf 487467157898665676545998899881793699899826753241586599999999999887-2585242125675
Q ss_pred CCCCC-CC------CCCCCCCEECCCCCC
Q ss_conf 43222-23------321012211055652
Q gi|254780233|r 288 IVSIA-GL------VKATVADTFCDPSID 309 (624)
Q Consensus 288 IvaIa-Gl------~~~~iGDTL~~~~~p 309 (624)
.+++. .| +|..+|..++.|+.-
T Consensus 328 ligiGT~Ldp~ltr~D~l~GqVlgkPGsl 356 (460)
T PTZ00327 328 LIGVGTTIDPTLTRADRLVGQVLGEPGQL 356 (460)
T ss_pred EEEECCCCCCCCCCCCCCCCCEEECCCCC
T ss_conf 36532201466211310146778669977
No 56
>TIGR00475 selB selenocysteine-specific translation elongation factor; InterPro: IPR004535 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation . This family describes the elongation factor SelB, a close homologue of EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This family should not include an equivalent protein for eukaryotes. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm.
Probab=100.00 E-value=3.7e-43 Score=302.55 Aligned_cols=257 Identities=28% Similarity=0.338 Sum_probs=202.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHH-HCCCEEEEEEEEEEECC--EEEEEECCCCCCCCHH
Q ss_conf 49998546898778899999983961423220000038857798-70960646799999899--7999972898754079
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEK-ERGITILAKVTSIVWND--VRINIVDTPGHADFGG 97 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~Er-eRGITI~a~~~~~~~~~--~~iNiiDTPGH~DF~g 97 (624)
|||..||||||||||.-+| ||+- .+-.|..|+|+ .||+||=-.-+++...+ +.+.|||.|||.-|.-
T Consensus 2 ~~at~GHvDHGKT~L~k~L---Tgi~-------stsa~~lPeEkqKRG~tIDLGfAy~~l~~~n~~l~~iDvPGHe~fl~ 71 (627)
T TIGR00475 2 IIATAGHVDHGKTTLLKAL---TGID-------STSADRLPEEKQKRGMTIDLGFAYLPLPDINKRLGFIDVPGHEKFLS 71 (627)
T ss_pred EEEEECCCCHHHHHHHHHH---CCCC-------CHHHHCCCCCCCCCCCEEECCCEECCCCCCCCCCEEEECCCHHHHHH
T ss_conf 6873124450479999985---0643-------01231277410257662460420036777771334785597389999
Q ss_pred HHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCCC-CCHHHHHHHHHHHHHHCCCCHHHC-CH
Q ss_conf 999998742178999976878864789999999972997-899997543667-402568999998886226730110-42
Q gi|254780233|r 98 EVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLR-PIVVVNKVDRSD-ARADEVINEVFDLFSALDATDAQL-DF 174 (624)
Q Consensus 98 EVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~-~IvvINKiDr~~-a~~~~v~~ei~dlf~~l~a~de~l-d~ 174 (624)
-.-.+++.+|+|||||||.||||+||+.||.-+...+.| .|||||||||.+ ++.+++..++.....+- ..+ +.
T Consensus 72 n~lAg~~~i~~alLvVda~eG~~~QT~EHL~vl~~l~~~~~ivvltK~D~~d~~~~~~~E~~~~~~l~~~----~~~~n~ 147 (627)
T TIGR00475 72 NALAGIGGIDAALLVVDADEGVMTQTKEHLAVLKLLGIPELIVVLTKADRVDEEEVKRVEEELKEILEEY----EFLKNA 147 (627)
T ss_pred HHHHHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHH----HHHCCC
T ss_conf 9866756540100354157788532389999999708961999973467456589999999999998764----321157
Q ss_pred HHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCC---CCCCCCCHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCEE
Q ss_conf 668878865916467422334864135553210245---42233200000111101367773499999607805159889
Q gi|254780233|r 175 PILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVP---PPVISEGEFKMIGTILEKDPFLGRIVTGRIHSGTIKSNQNI 251 (624)
Q Consensus 175 Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP---~P~~~e~pl~~~V~~i~~d~y~Gria~gRV~sGtlk~Gd~V 251 (624)
-++-.||.+| .||+.|=+.+..-.. .-.+-..||++.|-....=...|.+.+|.+++|+++.||+|
T Consensus 148 ~~~~~SA~tG-----------~Gi~~Lk~~L~~L~e~~~~~r~~~~~lr~~iD~aF~vKG~GtVvtGt~f~G~VkvGD~~ 216 (627)
T TIGR00475 148 KIFKTSAKTG-----------QGIEELKKELKNLLESLDIKRDKQKPLRLAIDRAFKVKGAGTVVTGTAFSGEVKVGDKL 216 (627)
T ss_pred CEEEEECCCC-----------CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCEEEEEEEEEEEEEEECCEE
T ss_conf 4799913468-----------77789999998657776554201566651032155870302468755784168988889
Q ss_pred EEECCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCC---CCCCC--CCCCEECCCCCCC
Q ss_conf 99605785012114553011036653444112545543222---23321--0122110556521
Q gi|254780233|r 252 KALSPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSIA---GLVKA--TVADTFCDPSIDE 310 (624)
Q Consensus 252 ~vl~~~g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIvaIa---Gl~~~--~iGDTL~~~~~p~ 310 (624)
++.+- | ...||.+|..+ .++++.|.|||-+|+. +++.- .-||.||...-+.
T Consensus 217 ~~~pi-g---~~~rvk~~~~~----~~~~~~A~AG~RiALnL~~~vd~~~~~RGDWll~~~p~~ 272 (627)
T TIGR00475 217 VLEPI-G---KEVRVKAIQAQ----NQDVEKAVAGQRIALNLAADVDKEKLKRGDWLLILKPED 272 (627)
T ss_pred EEEEC-C---CEEEEEEEECC----CCCCCEEECHHHHHHHCCCCCCCCCCCCCCEEECCCCCC
T ss_conf 98105-8---36788640205----885221002013654123457612256651220278888
No 57
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=100.00 E-value=3.3e-42 Score=296.32 Aligned_cols=187 Identities=27% Similarity=0.332 Sum_probs=154.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCC--CCC-------------CEECCCCHHHHHCCCEEEEEEEEEEECCEEEE
Q ss_conf 499985468987788999999839614232--200-------------00038857798709606467999998997999
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQ--RVS-------------ERVMDCNDLEKERGITILAKVTSIVWNDVRIN 85 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~--~v~-------------~~vmD~~~~EreRGITI~a~~~~~~~~~~~iN 85 (624)
.|+++||||||||||+++|||.+|.+.... +.. ..+||+.++||||||||......|+|++++++
T Consensus 1 ~~vv~GHVD~GKSTL~g~LL~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~lD~~~~ErerGiTId~~~~~f~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHCCCCEEEEEEEEEECCCEEE
T ss_conf 96999748898889999999982996789999999887541676300034346868788269794105899981992699
Q ss_pred EECCCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCCC---CCHHHHHHHHHHH
Q ss_conf 972898754079999998742178999976878864789999999972997-899997543667---4025689999988
Q gi|254780233|r 86 IVDTPGHADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLR-PIVVVNKVDRSD---ARADEVINEVFDL 161 (624)
Q Consensus 86 iiDTPGH~DF~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~-~IvvINKiDr~~---a~~~~v~~ei~dl 161 (624)
|||||||.||..++.++.+.+|+|||||||.+|+++||+.++..|..+|++ .||+|||||+.+ .+|+++.+++..+
T Consensus 81 iiDtPGH~dfi~nmi~gas~aD~ailVVda~~G~~~QT~eh~~~~~~lgi~~iIv~vNKmD~v~~~e~~f~~i~~~~~~~ 160 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEEIVADYLAF 160 (208)
T ss_pred EEECCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf 98789628899999999863774799997588872789999999997499839999988576899989999999999999
Q ss_pred HHHCCCCHHHCCHHHHHHHHHCCE--ECCCCCCCCCCCCHHHHHHHHCCCCCCC
Q ss_conf 862267301104266887886591--6467422334864135553210245422
Q gi|254780233|r 162 FSALDATDAQLDFPILYGSGRFGW--MSDSSDGSRDQGMVPLLNLIVDHVPPPV 213 (624)
Q Consensus 162 f~~l~a~de~ld~Pv~~~Sa~~G~--~~~~~~~~~~~gl~~Lld~Ii~~iP~P~ 213 (624)
+..++.. ++++++.||+.|. .......+|..| ..|||+ ++.+|.|.
T Consensus 161 l~~~~~~----~~~~IPiSa~~GdNi~~~s~~~~WY~G-~tLle~-Ld~~~~~~ 208 (208)
T cd04166 161 AAKLGIE----DITFIPISALDGDNVVSRSENMPWYSG-PTLLEH-LETVPIAS 208 (208)
T ss_pred HHHCCCC----CCEEEEEECCCCCCCCCCCCCCCCCCC-CHHHHH-HHCCCCCC
T ss_conf 9974998----871998126778887869999989888-349999-84777899
No 58
>KOG1145 consensus
Probab=100.00 E-value=1.3e-40 Score=285.94 Aligned_cols=249 Identities=28% Similarity=0.345 Sum_probs=201.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCE--EEEEEEEEEECCEEEEEECCCCCCCCHHH
Q ss_conf 4999854689877889999998396142322000003885779870960--64679999989979999728987540799
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGIT--ILAKVTSIVWNDVRINIVDTPGHADFGGE 98 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGIT--I~a~~~~~~~~~~~iNiiDTPGH~DF~gE 98 (624)
=|.|+||||||||||.|+|-..+=+-.+.| ||| |-|-.+++. +|.+|+|+|||||+-|+..
T Consensus 155 VVTiMGHVDHGKTTLLD~lRks~VAA~E~G----------------GITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aM 217 (683)
T KOG1145 155 VVTIMGHVDHGKTTLLDALRKSSVAAGEAG----------------GITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAM 217 (683)
T ss_pred EEEEEECCCCCHHHHHHHHHHCCEEHHHCC----------------CCCCEECEEEEECC-CCCEEEEECCCCHHHHHHH
T ss_conf 699860135770019988740722013237----------------71000022999638-9977887568747889999
Q ss_pred HHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHH
Q ss_conf 99998742178999976878864789999999972997899997543667402568999998886226730110426688
Q gi|254780233|r 99 VERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFPILY 178 (624)
Q Consensus 99 Ver~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~Pv~~ 178 (624)
-.|..+++|-++|||.|.+|+||||....++|...++|+||+|||+|+|+|+|+++..|+... .+...+.--|.++++
T Consensus 218 RaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~pekv~~eL~~~--gi~~E~~GGdVQvip 295 (683)
T KOG1145 218 RARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGANPEKVKRELLSQ--GIVVEDLGGDVQVIP 295 (683)
T ss_pred HHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHC--CCCHHHCCCCEEEEE
T ss_conf 862686444799999726775676899999887659978999843678998989999999876--932777078236998
Q ss_pred HHHHCCEECCCCCCCCCCCCHHHHHHHHCC---CCCCCCCCCHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEC
Q ss_conf 788659164674223348641355532102---45422332000001111013677734999996078051598899960
Q gi|254780233|r 179 GSGRFGWMSDSSDGSRDQGMVPLLNLIVDH---VPPPVISEGEFKMIGTILEKDPFLGRIVTGRIHSGTIKSNQNIKALS 255 (624)
Q Consensus 179 ~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~---iP~P~~~e~pl~~~V~~i~~d~y~Gria~gRV~sGtlk~Gd~V~vl~ 255 (624)
.||++| .|+..|.++|+-. ..--.++.+|+++.|.-...|+.+|.+++.=|..|||++|+-+..
T Consensus 296 iSAl~g-----------~nl~~L~eaill~Ae~mdLkA~p~g~~eg~VIES~vdkg~G~~aT~iVkrGTLkKG~vlV~-- 362 (683)
T KOG1145 296 ISALTG-----------ENLDLLEEAILLLAEVMDLKADPKGPAEGWVIESSVDKGRGPVATVIVKRGTLKKGSVLVA-- 362 (683)
T ss_pred EECCCC-----------CCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCEEEEEEECCCCCCCCEEEE--
T ss_conf 651147-----------9868999999999998641168899712899986413775642699995362315658997--
Q ss_pred CCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC-CCEECCCCC
Q ss_conf 57850121145530110366534441125455432222332101-221105565
Q gi|254780233|r 256 PDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSIAGLVKATV-ADTFCDPSI 308 (624)
Q Consensus 256 ~~g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIvaIaGl~~~~i-GDTL~~~~~ 308 (624)
|... +||..||-..| .++++|.++.-+-|.|.++..+ ||-+-..+.
T Consensus 363 --G~~w--~KVr~l~D~nG---k~i~~A~Ps~pv~V~GwkdlP~aGD~vleVeS 409 (683)
T KOG1145 363 --GKSW--CKVRALFDHNG---KPIDEATPSQPVEVLGWKDLPIAGDEVLEVES 409 (683)
T ss_pred --ECHH--HHHHHHHHCCC---CCCCCCCCCCCEEEECCCCCCCCCCEEEEEEC
T ss_conf --0214--43344552379---79221489983476424679988754899713
No 59
>TIGR02034 CysN sulfate adenylyltransferase, large subunit; InterPro: IPR011779 Metabolic assimilation of sulphur from inorganic sulphate, requires sulphate activation by coupling to a nucleoside, for the production of high-energy nucleoside phosphosulphates. This pathway appears to be similar in all prokaryotic organisms. Activation is first achieved through sulphation of sulphate with ATP by sulphate adenylyltransferase (ATP sulphurylase) to produce 5'-phosphosulphate (APS), coupled by GTP hydrolysis. Subsequently, APS is phosphorylated by an APS kinase to produce 3'-phosphoadenosine-5'-phosphosulphate (PAPS) . In Escherichia coli, ATP sulphurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulphur-containing amino acids . Homologous to this E. coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulphurase and APS kinase activity, yet are involved in Nod factor sulphation, and sulphation of other macromolecules . With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulphurase) and cysC (APS kinase) , .; GO: 0016772 transferase activity transferring phosphorus-containing groups.
Probab=100.00 E-value=1.7e-40 Score=285.09 Aligned_cols=271 Identities=25% Similarity=0.356 Sum_probs=204.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCC------------CCCCC-----EECCCCHHHHHCCCEEEEEEEEEEE---CC
Q ss_conf 9998546898778899999983961423------------22000-----0038857798709606467999998---99
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDN------------QRVSE-----RVMDCNDLEKERGITILAKVTSIVW---ND 81 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~------------~~v~~-----~vmD~~~~EreRGITI~a~~~~~~~---~~ 81 (624)
+.-.|-||-|||||+.|||+.|+.+-+- |.-.+ -++|-..-|||+|||| .+++.| +.
T Consensus 3 flTCGSVDDGKSTLIGRLLhDtK~i~eDQL~~l~~DS~~~G~~G~~iD~ALLVDGL~AEREQGITI---DVAYRYFsT~K 79 (411)
T TIGR02034 3 FLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGEEIDLALLVDGLQAEREQGITI---DVAYRYFSTDK 79 (411)
T ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCEE---EEEECCCCCCC
T ss_conf 352054458731022222555521689999998852255347887652341330677443248612---13313257787
Q ss_pred EEEEEECCCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEE-EEEECCCCCCCCHHHHHHHHHH
Q ss_conf 799997289875407999999874217899997687886478999999997299789-9997543667402568999998
Q gi|254780233|r 82 VRINIVDTPGHADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPI-VVVNKVDRSDARADEVINEVFD 160 (624)
Q Consensus 82 ~~iNiiDTPGH~DF~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~I-vvINKiDr~~a~~~~v~~ei~d 160 (624)
.||-+-|||||.-++==.--..+-||-|||+|||..|+..|||+|..-|--+|++.+ ++|||||.-+.+ ++|.+.|..
T Consensus 80 RkFIvADTPGHEQYTRNMATGAST~dlAvlLvDAR~Gvl~QTRRHs~i~sLLGIrh~VlAVNKmDLvdyd-~~vF~~I~~ 158 (411)
T TIGR02034 80 RKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYD-EEVFENIKK 158 (411)
T ss_pred CCEEEECCCCCCCCCCCCCHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCC-HHHHHHHHH
T ss_conf 6178840855941544300001311246655421021345677999998860453899999701114765-788999999
Q ss_pred HHHHCCCCH-HHCCHHHHHHHHHCC--EE-CCCCCCCCCCCCHHHHHHHHCCCCC-C-CCCCCHHHCCCCCCC--CC-CC
Q ss_conf 886226730-110426688788659--16-4674223348641355532102454-2-233200000111101--36-77
Q gi|254780233|r 161 LFSALDATD-AQLDFPILYGSGRFG--WM-SDSSDGSRDQGMVPLLNLIVDHVPP-P-VISEGEFKMIGTILE--KD-PF 231 (624)
Q Consensus 161 lf~~l~a~d-e~ld~Pv~~~Sa~~G--~~-~~~~~~~~~~gl~~Lld~Ii~~iP~-P-~~~e~pl~~~V~~i~--~d-~y 231 (624)
-|..+...= ...++.+++-||+.| ++ ......+|..|-. ||+. +|.+.. + ...+.||+++|.-+- .. +|
T Consensus 159 ~y~~fa~~L~g~~~~~~iP~SAL~GdNv~y~~S~~MpWY~GPt-Lle~-LEtv~~~~G~~~~~~lRfPVQyVnRPn~tdF 236 (411)
T TIGR02034 159 DYLAFAEQLAGVRDVTFIPLSALKGDNVVYSRSESMPWYSGPT-LLEH-LETVEVERGDAQDLPLRFPVQYVNRPNLTDF 236 (411)
T ss_pred HHHHHHHHCCCCCEEEEEEEECCCCCCEEECCCCCCCCCCCCC-HHHH-CCCCCCCCCCCCCCCCEEEEEEEECCCCCCC
T ss_conf 9999998638983479987331368740225667888757880-6530-0400003674224787200456526888666
Q ss_pred CCEEEEEEECCCCCCCCCEEEEECCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC--CCEECCCCC
Q ss_conf 73499999607805159889996057850121145530110366534441125455432222332101--221105565
Q gi|254780233|r 232 LGRIVTGRIHSGTIKSNQNIKALSPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSIAGLVKATV--ADTFCDPSI 308 (624)
Q Consensus 232 ~Gria~gRV~sGtlk~Gd~V~vl~~~g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIvaIaGl~~~~i--GDTL~~~~~ 308 (624)
+|-- |-|.||++++||+|.++ |+|. ..||++|.+|.| ++++|.|||=|.++=-+++.| ||-|..++.
T Consensus 237 RGya--Gt~asG~v~~Gd~v~vl-PSG~---~srV~rIVt~dg----~l~~A~aG~AvTL~L~~eiDisRGDll~~~D~ 305 (411)
T TIGR02034 237 RGYA--GTIASGSVKVGDEVVVL-PSGR---SSRVARIVTFDG----DLEQAVAGQAVTLVLDDEIDISRGDLLAAADS 305 (411)
T ss_pred CCHH--HHEECCEECCCCEEEEE-ECCC---EEEEEEEEECCC----CHHHCCCCCEEEEEEECEEEEECCHHHHCCCC
T ss_conf 5222--31022553459889996-2796---443558870465----33006687538998600043320022122467
No 60
>PRK04004 translation initiation factor IF-2; Validated
Probab=100.00 E-value=4.1e-38 Score=269.43 Aligned_cols=230 Identities=27% Similarity=0.372 Sum_probs=164.6
Q ss_pred CCCC--EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHH-CCCEEEEEEEEEEECC------------
Q ss_conf 2431--499985468987788999999839614232200000388577987-0960646799999899------------
Q gi|254780233|r 17 MQIR--NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKE-RGITILAKVTSIVWND------------ 81 (624)
Q Consensus 17 ~~IR--NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~Ere-RGITI~a~~~~~~~~~------------ 81 (624)
+++| =++|+||||||||||.|++- .|.+. ++| -|||-.-..+.+.|..
T Consensus 1 ~~lR~PIvtimGHVDhGKTsLLD~iR-~t~V~----------------~~EaGGITQhIGA~~v~~~~~~~~~~~~~~~~ 63 (592)
T PRK04004 1 MKLRQPIVVVLGHVDHGKTTLLDKIR-GTAVA----------------AKEAGGITQHIGATEVPIDVIEKIAGPLVKRL 63 (592)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHH-CCCCC----------------CCCCCCCCCEECEEEECCCCHHHHCCCCCCCC
T ss_conf 99889889997873777636899986-28773----------------55577623230659841231011034433443
Q ss_pred ------EEEEEECCCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC-CCCCH---
Q ss_conf ------79999728987540799999987421789999768788647899999999729978999975436-67402---
Q gi|254780233|r 82 ------VRINIVDTPGHADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDR-SDARA--- 151 (624)
Q Consensus 82 ------~~iNiiDTPGH~DF~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr-~~a~~--- 151 (624)
--|.|||||||..|+.--.|.-+++|-|+|||||.+|+||||...+.+|.+.+.|.||++||||| +++++
T Consensus 64 ~~~~~ipgllfiDTPGHeaFt~mR~RGa~vtDiaILVVa~~dGv~pQT~EaI~~~k~~~vP~IVAiNKiDr~~gw~~~~~ 143 (592)
T PRK04004 64 PLKLKIPGLLFIDTPGHEAFSNLRKRGGALADIAILVVDINEGFQPQTIESLNILKSRKTPFVVAANKIDRIPGWKSVEG 143 (592)
T ss_pred CCCCCCCCCEEECCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCC
T ss_conf 32345677557659965999999973674578899999778886762799999999759988999862235666776767
Q ss_pred -----------HHHHHHH----HHH---HHHCCCC--------HHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHH
Q ss_conf -----------5689999----988---8622673--------0110426688788659164674223348641355532
Q gi|254780233|r 152 -----------DEVINEV----FDL---FSALDAT--------DAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLI 205 (624)
Q Consensus 152 -----------~~v~~ei----~dl---f~~l~a~--------de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~I 205 (624)
+.+..++ +++ |.+.|.+ |..-++++++.||++| .|+..||++|
T Consensus 144 ~~~~~~~~~q~~~v~~~l~~~~~~vi~~l~e~G~~~e~~~~~~d~g~~v~~VpvSA~tG-----------eGi~dLL~~i 212 (592)
T PRK04004 144 APFLESFKKQSERVQAELEEKLYELIGELYELGFSADRFDRVSDFTKTVAIVPVSAKTG-----------EGIPDLLMVL 212 (592)
T ss_pred CCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCEEEEECCCCCC-----------CCHHHHHHHH
T ss_conf 41123223173889999988888888999872876322145434588148997820568-----------9989999999
Q ss_pred HCC----CC--CCCCCCCHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCEEECCCCCEEEECCCC
Q ss_conf 102----45--422332000001111013677734999996078051598899960578501211455301103665
Q gi|254780233|r 206 VDH----VP--PPVISEGEFKMIGTILEKDPFLGRIVTGRIHSGTIKSNQNIKALSPDGALVEVGRVSKILAFRGID 276 (624)
Q Consensus 206 i~~----iP--~P~~~e~pl~~~V~~i~~d~y~Gria~gRV~sGtlk~Gd~V~vl~~~g~~~~~~kV~~L~~~~G~~ 276 (624)
+.. +. --..+++|.+.-|--..-+..+|.++..=|++|||+.||.+.+...+|... .||..|+...+++
T Consensus 213 ~~Laq~~l~~~Lka~~~~~a~GtViEsk~dkG~G~vatVIv~~GtLk~GD~IV~g~~~Gpi~--tkVRALl~p~pl~ 287 (592)
T PRK04004 213 AGLAQRYLEEELKIEVEGPGKGTVLEVKEERGLGTTLDVILYDGTLRKGDTIVVGGLDGPIV--TKVRALLKPKPLD 287 (592)
T ss_pred HHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCEEEEEEECCEECCCCEEEEEECCCCCC--CCHHHHHCCCCCC
T ss_conf 99999999985367999986189999986079886179999768471699999951578620--0047660787643
No 61
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=100.00 E-value=3.3e-39 Score=276.61 Aligned_cols=165 Identities=31% Similarity=0.376 Sum_probs=134.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEE----------E------EEEC----
Q ss_conf 4999854689877889999998396142322000003885779870960646799----------9------9989----
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVT----------S------IVWN---- 80 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~----------~------~~~~---- 80 (624)
||+++||||||||||+++| +|.. .|....|+||||||..... . ..|.
T Consensus 2 Ni~iiGHVDhGKSTLi~~L---~g~~----------~~~~~~e~er~it~klg~a~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKAL---SGVW----------TVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSP 68 (203)
T ss_pred EEEEEEEECCCHHHHHHHH---HCCC----------HHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCC
T ss_conf 6999988578799999997---0851----------24407888677603111456666511121223101111012442
Q ss_pred -------------CEEEEEECCCCCCCCHHHHHHHHHHHCEEEEEEECCCCC-CHHHHHHHHHHHHCCCC-EEEEEECCC
Q ss_conf -------------979999728987540799999987421789999768788-64789999999972997-899997543
Q gi|254780233|r 81 -------------DVRINIVDTPGHADFGGEVERILCMVESVVVLVDAAEGP-MPQTKFVVGKALKIGLR-PIVVVNKVD 145 (624)
Q Consensus 81 -------------~~~iNiiDTPGH~DF~gEVer~l~~~DgaiLvVdA~eGv-~~QT~~vl~~A~~~~l~-~IvvINKiD 145 (624)
.++|||||||||.||...+.++.+.+|+|+|||||.+|+ ++||+.++..+..+|++ .||+|||||
T Consensus 69 ~~~~~~~~~~~~~~r~~tiiD~PGH~df~~nmi~Gas~aD~aiLvVdA~eG~~~~QT~eH~~l~~~lgv~~iIV~vNKmD 148 (203)
T cd01888 69 ECECPGCGGETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKID 148 (203)
T ss_pred EEEECCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 14531456543112479998689879999999976643476689864366775077999999999849986367750777
Q ss_pred CCCC-CHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCCCC
Q ss_conf 6674-0256899999888622673011042668878865916467422334864135553210245422
Q gi|254780233|r 146 RSDA-RADEVINEVFDLFSALDATDAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPPV 213 (624)
Q Consensus 146 r~~a-~~~~v~~ei~dlf~~l~a~de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~P~ 213 (624)
..+. ++.+..+++.+++.++... +.|+++.||+.| .|++.||++|++++|+|.
T Consensus 149 lv~~~~~~~~~~ei~~~l~~~~~~----~~~iIPiSA~~G-----------~NI~~ll~~i~~~ip~P~ 202 (203)
T cd01888 149 LVKEEQALENYEQIKKFVKGTIAE----NAPIIPISAQLK-----------YNIDVLLEYIVKKIPTPP 202 (203)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCC----CCEEEEEECCCC-----------CCHHHHHHHHHHHCCCCC
T ss_conf 788678999999999985521689----985999147889-----------799999999986782999
No 62
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-37 Score=265.97 Aligned_cols=283 Identities=26% Similarity=0.380 Sum_probs=204.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCCCC------------CCCC-----EECCCCHHHHHCCCEEEEEEEEEEECC
Q ss_conf 31499985468987788999999839614232------------2000-----003885779870960646799999899
Q gi|254780233|r 19 IRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQ------------RVSE-----RVMDCNDLEKERGITILAKVTSIVWND 81 (624)
Q Consensus 19 IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~------------~v~~-----~vmD~~~~EreRGITI~a~~~~~~~~~ 81 (624)
.=++...||||+|||||+.+|||.|..+-+.+ .-.+ -+.|....|||+||||--..-.|..+.
T Consensus 6 lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~K 85 (431)
T COG2895 6 LLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTEK 85 (431)
T ss_pred CEEEEEECCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCC
T ss_conf 13689753536860232446553101105779998752131236778754525633256888864965998764103666
Q ss_pred EEEEEECCCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEE-EEEECCCCCC---CCHHHHHHH
Q ss_conf 799997289875407999999874217899997687886478999999997299789-9997543667---402568999
Q gi|254780233|r 82 VRINIVDTPGHADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPI-VVVNKVDRSD---ARADEVINE 157 (624)
Q Consensus 82 ~~iNiiDTPGH~DF~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~I-vvINKiDr~~---a~~~~v~~e 157 (624)
.||-|.|||||..|.--.--..+-||.|+|+|||..|++.|||++-..+-.+|++.+ ++|||||.-+ ++|+++..+
T Consensus 86 RkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F~~I~~d 165 (431)
T COG2895 86 RKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSEEVFEAIVAD 165 (431)
T ss_pred CEEEEECCCCHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHH
T ss_conf 30898459967987642223623003799999642216777677899999728767999974101235678999999999
Q ss_pred HHHHHHHCCCCHHHCCHHHHHHHHHCC--EECCCCCCCCCCCCHHHHHHHHCCCCC-CCCCCCHHHCCCCCCC--CCCCC
Q ss_conf 998886226730110426688788659--164674223348641355532102454-2233200000111101--36777
Q gi|254780233|r 158 VFDLFSALDATDAQLDFPILYGSGRFG--WMSDSSDGSRDQGMVPLLNLIVDHVPP-PVISEGEFKMIGTILE--KDPFL 232 (624)
Q Consensus 158 i~dlf~~l~a~de~ld~Pv~~~Sa~~G--~~~~~~~~~~~~gl~~Lld~Ii~~iP~-P~~~e~pl~~~V~~i~--~d~y~ 232 (624)
...+-.+|+-.+.+ .++.||+.| ++......+|..| .+||+. ++.++. .....+||++.|.-+. .++|+
T Consensus 166 y~~fa~~L~~~~~~----~IPiSAl~GDNV~~~s~~mpWY~G-ptLLe~-LE~v~i~~~~~~~~~RfPVQ~V~Rp~~dfR 239 (431)
T COG2895 166 YLAFAAQLGLKDVR----FIPISALLGDNVVSKSENMPWYKG-PTLLEI-LETVEIADDRSAKAFRFPVQYVNRPNLDFR 239 (431)
T ss_pred HHHHHHHCCCCCCE----EEECHHHCCCCCCCCCCCCCCCCC-CCHHHH-HHHCCCCCCCCCCCEEECEEEECCCCCCCC
T ss_conf 99999976998524----774323048753346567886468-509999-741223455436650102288617897621
Q ss_pred CEEEEEEECCCCCCCCCEEEEECCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC--CCEECCCCCCC
Q ss_conf 3499999607805159889996057850121145530110366534441125455432222332101--22110556521
Q gi|254780233|r 233 GRIVTGRIHSGTIKSNQNIKALSPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSIAGLVKATV--ADTFCDPSIDE 310 (624)
Q Consensus 233 Gria~gRV~sGtlk~Gd~V~vl~~~g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIvaIaGl~~~~i--GDTL~~~~~p~ 310 (624)
| --|+|.||+++.||+|.++ |+|. +.+|++|.++.| +.++|.||+-|.+.--+++.+ ||.|++.+.+.
T Consensus 240 G--yaGtiasG~v~~Gd~vvvl-PsG~---~s~V~~Ivt~dg----~~~~A~aG~aVtl~L~deidisRGd~i~~~~~~~ 309 (431)
T COG2895 240 G--YAGTIASGSVKVGDEVVVL-PSGK---TSRVKRIVTFDG----ELAQASAGEAVTLVLADEIDISRGDLIVAADAPP 309 (431)
T ss_pred C--CCEEEECCCEECCCEEEEC-CCCC---EEEEEEEECCCC----CHHHCCCCCEEEEEECCEEECCCCCEEECCCCCC
T ss_conf 0--0304403514059748994-5897---035799964687----1654168842899980002002573787068985
Q ss_pred CCCCCCCC
Q ss_conf 12336666
Q gi|254780233|r 311 PLKAQPID 318 (624)
Q Consensus 311 ~Lp~i~i~ 318 (624)
+ +.-.+.
T Consensus 310 ~-~~~~f~ 316 (431)
T COG2895 310 A-VADAFD 316 (431)
T ss_pred C-HHHHCC
T ss_conf 5-223216
No 63
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.5e-37 Score=263.37 Aligned_cols=252 Identities=29% Similarity=0.372 Sum_probs=193.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEE---CCEEEEEECCCCCCCCHH
Q ss_conf 49998546898778899999983961423220000038857798709606467999998---997999972898754079
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVW---NDVRINIVDTPGHADFGG 97 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~---~~~~iNiiDTPGH~DF~g 97 (624)
=++|+||||||||||.|.+= .|.+.. ++ .=|||=.-..+.+.+ +...|.|||||||.-|+.
T Consensus 7 vVtimGHVDHGKTtLLD~IR-~t~Va~--~E-------------aGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~ 70 (509)
T COG0532 7 VVTIMGHVDHGKTTLLDKIR-KTNVAA--GE-------------AGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTA 70 (509)
T ss_pred EEEEECCCCCCCCCHHHHHH-CCCCCC--CC-------------CCCEEEEEEEEEEEECCCCCCEEEEECCCCHHHHHH
T ss_conf 89996743588420166674-176435--66-------------785001743499986468865289974895788887
Q ss_pred HHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHH
Q ss_conf 99999874217899997687886478999999997299789999754366740256899999888622673011042668
Q gi|254780233|r 98 EVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFPIL 177 (624)
Q Consensus 98 EVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~Pv~ 177 (624)
--.|.-+++|.|+|||+|.+|+||||.....+|..++.|.||++|||||++++|+.+..+..+. .+.+.++--+..++
T Consensus 71 mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~--gl~~E~~gg~v~~V 148 (509)
T COG0532 71 MRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEY--GLVPEEWGGDVIFV 148 (509)
T ss_pred HHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHC--CCCHHHCCCCEEEE
T ss_conf 8755775445799999756785661799999998779998999854327998878999988777--98876618814999
Q ss_pred HHHHHCCEECCCCCCCCCCCCHHHHHHHHCC---CCCCCCCCCHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEE
Q ss_conf 8788659164674223348641355532102---4542233200000111101367773499999607805159889996
Q gi|254780233|r 178 YGSGRFGWMSDSSDGSRDQGMVPLLNLIVDH---VPPPVISEGEFKMIGTILEKDPFLGRIVTGRIHSGTIKSNQNIKAL 254 (624)
Q Consensus 178 ~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~---iP~P~~~e~pl~~~V~~i~~d~y~Gria~gRV~sGtlk~Gd~V~vl 254 (624)
+.||++| .|+..||++|+-. .---..++++....|--..-|..+|.++..=|++|||+.||.+.+.
T Consensus 149 pvSA~tg-----------~Gi~eLL~~ill~aev~elka~~~~~a~gtviE~~~dkG~G~vatviv~~GtL~~GD~iv~g 217 (509)
T COG0532 149 PVSAKTG-----------EGIDELLELILLLAEVLELKANPEGPARGTVIEVKLDKGLGPVATVIVQDGTLKKGDIIVAG 217 (509)
T ss_pred EEECCCC-----------CCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCEEEEEEECCEEECCCEEEEC
T ss_conf 7432478-----------79799999999888998644288987249999998626887528999964847449999983
Q ss_pred CCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC-CCEECCCCCCC
Q ss_conf 057850121145530110366534441125455432222332101-22110556521
Q gi|254780233|r 255 SPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSIAGLVKATV-ADTFCDPSIDE 310 (624)
Q Consensus 255 ~~~g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIvaIaGl~~~~i-GDTL~~~~~p~ 310 (624)
...| +|..++.-. -.+++++.++--+.+.|++++.. ||......+..
T Consensus 218 ~~~g------~I~t~v~~~---~~~i~~a~ps~~v~i~g~~evp~Ag~~~~v~~~e~ 265 (509)
T COG0532 218 GEYG------RVRTMVDDL---GKPIKEAGPSKPVEILGLSEVPAAGDVFIVVKDEK 265 (509)
T ss_pred CCCC------CEEEEEHHC---CCCCCCCCCCCCEEEECCCCCCCCCCEEEECCCHH
T ss_conf 7877------369855420---98952147987769850036664576279527758
No 64
>KOG0458 consensus
Probab=100.00 E-value=1e-36 Score=260.22 Aligned_cols=284 Identities=25% Similarity=0.297 Sum_probs=216.8
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCC------------CCC---CEECCCCHHHHHCCCEEEEEEEEEEEC
Q ss_conf 02431499985468987788999999839614232------------200---000388577987096064679999989
Q gi|254780233|r 16 YMQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQ------------RVS---ERVMDCNDLEKERGITILAKVTSIVWN 80 (624)
Q Consensus 16 ~~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~------------~v~---~~vmD~~~~EreRGITI~a~~~~~~~~ 80 (624)
+..-=|.+++||||+||+||..+|||..|.++... ... .++||...+|||||+|..-+.+.|+-+
T Consensus 174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~ 253 (603)
T KOG0458 174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESK 253 (603)
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCEEEEEEEEEEECC
T ss_conf 76615899970234541110237888736865788999999987528753025677436312454363677546898468
Q ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHCEEEEEEECCCCC-------CHHHHHHHHHHHHCCCC-EEEEEECCCCCC---C
Q ss_conf 979999728987540799999987421789999768788-------64789999999972997-899997543667---4
Q gi|254780233|r 81 DVRINIVDTPGHADFGGEVERILCMVESVVVLVDAAEGP-------MPQTKFVVGKALKIGLR-PIVVVNKVDRSD---A 149 (624)
Q Consensus 81 ~~~iNiiDTPGH~DF~gEVer~l~~~DgaiLvVdA~eGv-------~~QT~~vl~~A~~~~l~-~IvvINKiDr~~---a 149 (624)
.+.+.|||+|||.||.-+.....+-+|.|+|||||..|- --||+.+......+|+. .||+|||||.-+ -
T Consensus 254 ~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~Wsq~ 333 (603)
T KOG0458 254 SKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVSWSQD 333 (603)
T ss_pred CEEEEEECCCCCCCCCHHHHCCCCCCCEEEEEEECCCCHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCHH
T ss_conf 61699860787423552343362215668999987754333134879865899999987495258888630101275388
Q ss_pred CHHHHHHHHHHHH-HHCCCCHHHCCHHHHHHHHHCCEECC----CCCCCCCCCCHHHHHHHHCCCCCCCCC-CCHHHCCC
Q ss_conf 0256899999888-62267301104266887886591646----742233486413555321024542233-20000011
Q gi|254780233|r 150 RADEVINEVFDLF-SALDATDAQLDFPILYGSGRFGWMSD----SSDGSRDQGMVPLLNLIVDHVPPPVIS-EGEFKMIG 223 (624)
Q Consensus 150 ~~~~v~~ei~dlf-~~l~a~de~ld~Pv~~~Sa~~G~~~~----~~~~~~~~gl~~Lld~Ii~~iP~P~~~-e~pl~~~V 223 (624)
||+++.+.+...+ ..++..|..+- .+++||+.|--.. ...-..|..-..||+.|-. +-+|..+ +.||++-|
T Consensus 334 RF~eIk~~l~~fL~~~~gf~es~v~--FIPiSGl~GeNL~k~~~~~~l~~WY~Gp~LL~~id~-~~~p~~~~~kPl~ltI 410 (603)
T KOG0458 334 RFEEIKNKLSSFLKESCGFKESSVK--FIPISGLSGENLIKIEQENELSQWYKGPTLLSQIDS-FKIPERPIDKPLRLTI 410 (603)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCC--EEECCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH-CCCCCCCCCCCEEEEH
T ss_conf 9999999899999985285047765--695546567762123341355665338808888861-3688876667748783
Q ss_pred CCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCC--CCC--CCCCC
Q ss_conf 11013677734999996078051598899960578501211455301103665344411254554322--223--32101
Q gi|254780233|r 224 TILEKDPFLGRIVTGRIHSGTIKSNQNIKALSPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSI--AGL--VKATV 299 (624)
Q Consensus 224 ~~i~~d~y~Gria~gRV~sGtlk~Gd~V~vl~~~g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIvaI--aGl--~~~~i 299 (624)
..+...+--|-..+|||.||.|+.||+|+++... ..+.|..|-.- ..+...|.|||-|.+ .|+ ..+.+
T Consensus 411 sdi~~~~~~~~~i~gkiesG~iq~gqkl~i~~s~----e~~~vk~l~~~----~~~~~~a~AGD~Vsl~L~~i~~n~v~~ 482 (603)
T KOG0458 411 SDIYPLPSSGVSISGKIESGYIQPGQKLYIMTSR----EDATVKGLTSN----DEPKTWAVAGDNVSLKLPGILPNLVQV 482 (603)
T ss_pred HHEEECCCCEEEEEEEEECCCCCCCCEEEEECCC----CEEEEEEEECC----CCCCEEEEECCEEEEECCCCCHHHCCC
T ss_conf 0054358870689999721421359989983575----30799855438----986215761778998537657645355
Q ss_pred CCEEC-CCCCCC
Q ss_conf 22110-556521
Q gi|254780233|r 300 ADTFC-DPSIDE 310 (624)
Q Consensus 300 GDTL~-~~~~p~ 310 (624)
||++| .+..|.
T Consensus 483 g~i~~~~~~~~i 494 (603)
T KOG0458 483 GDIADSGPQFPI 494 (603)
T ss_pred CEEEECCCCCCC
T ss_conf 204522787543
No 65
>TIGR00485 EF-Tu translation elongation factor Tu; InterPro: IPR004541 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome , , . EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding , . EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). This entry represents EF1A (or EF-Tu) proteins found primarily in bacteria, mitochondria and chloroplasts. Eukaryotic and archaeal EF1A (IPR004539 from INTERPRO) are excluded from this entry. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors . More information about these proteins can be found at Protein of the Month: Elongation Factors .; GO: 0003746 translation elongation factor activity, 0005525 GTP binding, 0006414 translational elongation, 0005622 intracellular.
Probab=100.00 E-value=5.9e-37 Score=261.86 Aligned_cols=284 Identities=29% Similarity=0.398 Sum_probs=216.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCC---EECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCH
Q ss_conf 14999854689877889999998396142322000---003885779870960646799999899799997289875407
Q gi|254780233|r 20 RNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSE---RVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFG 96 (624)
Q Consensus 20 RNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~---~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~ 96 (624)
-||+.|||||||||||+-++-. ++...+.... .-.|..|+|++|||||.+..+.++....++.-+|||||+||.
T Consensus 13 ~n~GtiGhvdhGkttl~aa~~~---~l~~~~~~~~~~y~~id~aPee~~rGiti~~~~vey~~~~rhyahvdCPGhadyv 89 (394)
T TIGR00485 13 VNIGTIGHVDHGKTTLTAAITT---VLAKEGKAAAKKYDEIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (394)
T ss_pred EEEEEEEECCCCHHHHHHHHHH---HHHHHHHHHHHHHHHHHCCCCHHHCCEEEEEEEEEECCCCCCEEEECCCCHHHHH
T ss_conf 3330121001550578999999---9875100356767765237211334515653355421467515763188626788
Q ss_pred HHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEE-EEEECCCCCC--CCHHHHHHHHHHHHHHCCCCHHHCC
Q ss_conf 999999874217899997687886478999999997299789-9997543667--4025689999988862267301104
Q gi|254780233|r 97 GEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPI-VVVNKVDRSD--ARADEVINEVFDLFSALDATDAQLD 173 (624)
Q Consensus 97 gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~I-vvINKiDr~~--a~~~~v~~ei~dlf~~l~a~de~ld 173 (624)
-.......-.|||+|||+|.+|+||||+.++-.|.+.|+|.| +|+||.|.-+ .-.+-|..|+.+|+...+..- -|
T Consensus 90 knmitGaaqmdGailvv~~~d~~mPqt~ehill~~~vGvP~~vvflnk~d~~~~~el~~lv~~e~~~ll~~~~f~G--~~ 167 (394)
T TIGR00485 90 KNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPKIVVFLNKVDMVDDEELLELVELEVRELLSEYDFPG--DD 167 (394)
T ss_pred HHHHHHHHHCCCEEEEEECCCCCCCCCHHHEEEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCC--CC
T ss_conf 8764101111760799952788887411210010026876578764023322427899999999999987407898--65
Q ss_pred HHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCCCCCC-CCHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEE
Q ss_conf 266887886591646742233486413555321024542233-2000001111013677734999996078051598899
Q gi|254780233|r 174 FPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPPVIS-EGEFKMIGTILEKDPFLGRIVTGRIHSGTIKSNQNIK 252 (624)
Q Consensus 174 ~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~P~~~-e~pl~~~V~~i~~d~y~Gria~gRV~sGtlk~Gd~V~ 252 (624)
.|++.+||+...- .+..+...+..|++.+-+|+|.|... +.||.+.|-++..-..+|.+++|||..|.++.|++|.
T Consensus 168 ~Pi~~Gsal~al~---~~~~~~~~~~~l~~~vd~~i~~P~r~~~~~fl~~~ed~~~i~GrGtv~tGr~e~G~~~v~~~v~ 244 (394)
T TIGR00485 168 VPIVRGSALKALE---GDAEWEEKILELMEAVDEYIPTPEREVDKPFLLPIEDVFSITGRGTVVTGRVERGVVKVGEEVE 244 (394)
T ss_pred CCEEECHHHHHHH---HHHHHHHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEEEEEEECCCEEEEEEEEECEEEECCEEE
T ss_conf 2256114565420---0367999999999999865067511314411455310467504634785024304476446479
Q ss_pred EECCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCC--CCCC--CCCCCCEECCCCCCCCCCCCCC
Q ss_conf 960578501211455301103665344411254554322--2233--2101221105565211233666
Q gi|254780233|r 253 ALSPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSI--AGLV--KATVADTFCDPSIDEPLKAQPI 317 (624)
Q Consensus 253 vl~~~g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIvaI--aGl~--~~~iGDTL~~~~~p~~Lp~i~i 317 (624)
++.-... +...++.+-.| +...+++.|||.+.+ -|+. ++.-|..||.|+...|...++-
T Consensus 245 ~~G~~~~--~~~~vtGvemf----~k~l~~~~aG~n~G~llrG~~~~~~~rG~v~~~P~~~~~~~~f~~ 307 (394)
T TIGR00485 245 IVGLKDT--KKTTVTGVEMF----RKELDEGEAGDNVGLLLRGIKKEEIERGMVLAKPGSIKPHKKFEA 307 (394)
T ss_pred EEEEECC--CCEEEHHHHHH----HHHHHCCCCCCCEEEEEECCCHHHCCCCEEEECCCCCCCCCCCCE
T ss_conf 9874024--54022147888----887411335542010110453121015637843763230001204
No 66
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.6e-34 Score=243.56 Aligned_cols=250 Identities=30% Similarity=0.363 Sum_probs=196.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHH
Q ss_conf 49998546898778899999983961423220000038857798709606467999998997999972898754079999
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVE 100 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVe 100 (624)
+|+..||+|||||||..++ +|. ..|..++|++|||||--........++.+.|||+|||.||.--.-
T Consensus 2 ii~t~GhidHgkT~L~~al---tg~----------~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~mi 68 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKAL---TGG----------VTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLL 68 (447)
T ss_pred EEEEEEEEECCCHHHHHHH---CCC----------CCCCCHHHHHCCCEEEEEEEECCCCCCCEEEEECCCCHHHHHHHH
T ss_conf 6997400201430223330---255----------332054566158468420573257777368861898478899998
Q ss_pred HHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCE-EEEEECCCCCC-CCHHHHHHHHHHHHHHCCCCHHHCCHHHHH
Q ss_conf 9987421789999768788647899999999729978-99997543667-402568999998886226730110426688
Q gi|254780233|r 101 RILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRP-IVVVNKVDRSD-ARADEVINEVFDLFSALDATDAQLDFPILY 178 (624)
Q Consensus 101 r~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~-IvvINKiDr~~-a~~~~v~~ei~dlf~~l~a~de~ld~Pv~~ 178 (624)
.++++.|.|+|||+|.||+++||..++.-...+|++. |+++||+|+.+ ++.+++.+++.. .+. .-+.|++.
T Consensus 69 ag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~~r~e~~i~~Il~---~l~----l~~~~i~~ 141 (447)
T COG3276 69 AGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDEARIEQKIKQILA---DLS----LANAKIFK 141 (447)
T ss_pred HHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHH---HCC----CCCCCCCC
T ss_conf 54057745899984755766436889999986198732899962234467889999999986---502----00032301
Q ss_pred HHHHCCEECCCCCCCCCCCCHHHHHHHHCCCC-CCCCCCCHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCC
Q ss_conf 78865916467422334864135553210245-42233200000111101367773499999607805159889996057
Q gi|254780233|r 179 GSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVP-PPVISEGEFKMIGTILEKDPFLGRIVTGRIHSGTIKSNQNIKALSPD 257 (624)
Q Consensus 179 ~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP-~P~~~e~pl~~~V~~i~~d~y~Gria~gRV~sGtlk~Gd~V~vl~~~ 257 (624)
.|+..| .|++.|-+.|.+..- .-.+.++||++.|-....=..+|.+.+|.++||+++.||++++...
T Consensus 142 ~s~~~g-----------~Gi~~Lk~~l~~L~~~~e~d~~~~fri~IDraFtVKGvGTVVtGtv~sG~V~v~D~L~l~p~- 209 (447)
T COG3276 142 TSAKTG-----------RGIEELKNELIDLLEEIERDEQKPFRIAIDRAFTVKGVGTVVTGTVLSGEVKVGDKLYLSPI- 209 (447)
T ss_pred CCCCCC-----------CCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCEEEEEEEEEEEEEECCEEEEECC-
T ss_conf 101257-----------87799999998752005540478659997557995133179986786435887888999058-
Q ss_pred CCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCC--CC--CCCCCCCEECCCCCC
Q ss_conf 85012114553011036653444112545543222--23--321012211055652
Q gi|254780233|r 258 GALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSIA--GL--VKATVADTFCDPSID 309 (624)
Q Consensus 258 g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIvaIa--Gl--~~~~iGDTL~~~~~p 309 (624)
+ +..+|.+|..+ .+++++|.||+-|+++ |. +++.-|+.|.+++..
T Consensus 210 ~---k~v~VRsIq~~----d~d~~~a~AG~RVglaL~~v~~eei~RG~~L~~~~~~ 258 (447)
T COG3276 210 N---KEVRVRSIQAH----DVDVEEAKAGQRVGLALKGVEKEEIERGDWLLKPEPL 258 (447)
T ss_pred C---CEEEEEEEEEC----CCCHHHCCCCCEEEEECCCCCHHHHHCCCEECCCCCC
T ss_conf 9---76899863206----8645550122514542378877885112275157777
No 67
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=100.00 E-value=5.3e-34 Score=242.47 Aligned_cols=158 Identities=32% Similarity=0.422 Sum_probs=134.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEE-CCEEEEEECCCCCCCCHHHHH
Q ss_conf 9998546898778899999983961423220000038857798709606467999998-997999972898754079999
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVW-NDVRINIVDTPGHADFGGEVE 100 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~-~~~~iNiiDTPGH~DF~gEVe 100 (624)
|||+||+|||||||+++| +|.. .|..+.|++|||||.....++.| +++.++|||||||.+|..++.
T Consensus 3 VaivG~~n~GKSTL~n~L---~g~~----------~d~~~~e~~~giTi~~~~~~~~~~~~~~i~~iDtPGh~~~~~~~~ 69 (164)
T cd04171 3 IGTAGHIDHGKTTLIKAL---TGIE----------TDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNML 69 (164)
T ss_pred EEEECCCCCCHHHHHHHH---HCCC----------CCCCHHHHCCCEEEEEEEEEEECCCCCEEEEEECCCHHHHHHHHH
T ss_conf 999926887299999998---4964----------663333334863798546878648998999994878799999999
Q ss_pred HHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCCCC-CHHHHHHHHHHHHHHCCCCHHHCCHHHHH
Q ss_conf 998742178999976878864789999999972997-8999975436674-02568999998886226730110426688
Q gi|254780233|r 101 RILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLR-PIVVVNKVDRSDA-RADEVINEVFDLFSALDATDAQLDFPILY 178 (624)
Q Consensus 101 r~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~-~IvvINKiDr~~a-~~~~v~~ei~dlf~~l~a~de~ld~Pv~~ 178 (624)
+++..+|.|+|||||.+|+++||+.+|..+..+++| .|+|+||||+.+. ..+++..++.+++...+. .+.|+++
T Consensus 70 ~~~~~aD~~llVvda~~g~~~q~~e~~~~~~~~~i~~~ivvlNK~D~v~~~~~~~~~~~i~~~l~~~~~----~~~pii~ 145 (164)
T cd04171 70 AGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFL----ADAPIFP 145 (164)
T ss_pred HHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCC----CCCEEEE
T ss_conf 987426725899861778888899999999873887278734634257978999999999999974399----9982999
Q ss_pred HHHHCCEECCCCCCCCCCCCHHHHHHHHC
Q ss_conf 78865916467422334864135553210
Q gi|254780233|r 179 GSGRFGWMSDSSDGSRDQGMVPLLNLIVD 207 (624)
Q Consensus 179 ~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~ 207 (624)
.||++| .|++.|+++|.+
T Consensus 146 iSA~tG-----------~Gi~eL~~~I~e 163 (164)
T cd04171 146 VSAVTG-----------EGIEELKEYLDE 163 (164)
T ss_pred EECCCC-----------CCHHHHHHHHHH
T ss_conf 469898-----------299999999984
No 68
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.98 E-value=1.2e-31 Score=226.93 Aligned_cols=160 Identities=31% Similarity=0.422 Sum_probs=129.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEE---EECCEEEEEECCCCCCCCHH
Q ss_conf 499985468987788999999839614232200000388577987096064679999---98997999972898754079
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSI---VWNDVRINIVDTPGHADFGG 97 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~---~~~~~~iNiiDTPGH~DF~g 97 (624)
-|||+||+|||||||.++|.... +. .+..+|+|..-..+.+ .|++++|+|+|||||.+|..
T Consensus 2 ~VaivG~~n~GKSTL~n~L~~~~--------~~--------~~~~~g~T~~i~~~~~~~~~~~~~~i~~iDTPGh~~f~~ 65 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTN--------VA--------AGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTN 65 (168)
T ss_pred EEEEEECCCCCHHHHHHHHHCCC--------CC--------EEECCCCEEEECEEEEEEEECCCCEEEEEECCCCHHHHH
T ss_conf 89999489985989999985867--------50--------451698168715399998825887189998998167799
Q ss_pred HHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHH
Q ss_conf 99999874217899997687886478999999997299789999754366740256899999888622673011042668
Q gi|254780233|r 98 EVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFPIL 177 (624)
Q Consensus 98 EVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~Pv~ 177 (624)
..+|+++.+|.|+|||||.+|+++||+.+|..+.+.++|.|+++||||+++++++++..++.++... ...+..-++|++
T Consensus 66 ~~~~~~~~aD~~ilvvda~~g~~~~~~~~~~~l~~~~~p~ivviNKiD~~~~~~~~v~~~l~~~~~~-~~~~~~~~~~iI 144 (168)
T cd01887 66 MRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANPERVKNELSELGLQ-GEDEWGGDVQIV 144 (168)
T ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCC-CHHHCCCCCEEE
T ss_conf 9999986268899998646675458999999998769978999989308987989999999997545-245528987599
Q ss_pred HHHHHCCEECCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 8788659164674223348641355532102
Q gi|254780233|r 178 YGSGRFGWMSDSSDGSRDQGMVPLLNLIVDH 208 (624)
Q Consensus 178 ~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~ 208 (624)
+.||++| .|++.|+++|+..
T Consensus 145 pvSA~tG-----------~gi~~L~~~i~~~ 164 (168)
T cd01887 145 PTSAKTG-----------EGIDDLLEAILLL 164 (168)
T ss_pred EEECCCC-----------CCHHHHHHHHHHH
T ss_conf 9989999-----------8999999999999
No 69
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=5e-31 Score=222.91 Aligned_cols=265 Identities=27% Similarity=0.431 Sum_probs=179.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEE--E------E----E--------
Q ss_conf 149998546898778899999983961423220000038857798709606467999--9------9----8--------
Q gi|254780233|r 20 RNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTS--I------V----W-------- 79 (624)
Q Consensus 20 RNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~--~------~----~-------- 79 (624)
=||+.+||||||||||+-+| ||+.. |.+.+|-+|||||+-..+. + . |
T Consensus 11 vNIG~vGHVdHGKtTlv~Al---sGvwT----------~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~ 77 (415)
T COG5257 11 VNIGMVGHVDHGKTTLTKAL---SGVWT----------DRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPN 77 (415)
T ss_pred EEEEEEEECCCCHHHHEEHH---HCEEE----------ECHHHHHHCCCEEEECCCCCCEEECCCCCCCCCCCCCCCCCC
T ss_conf 47623420146624110033---13343----------020688756847984025574575777788766234787777
Q ss_pred C------CEEEEEECCCCCCCCHHHHHHHHHHHCEEEEEEECCCC-CCHHHHHHHHHHHHCCCC-EEEEEECCCCCCC-C
Q ss_conf 9------97999972898754079999998742178999976878-864789999999972997-8999975436674-0
Q gi|254780233|r 80 N------DVRINIVDTPGHADFGGEVERILCMVESVVVLVDAAEG-PMPQTKFVVGKALKIGLR-PIVVVNKVDRSDA-R 150 (624)
Q Consensus 80 ~------~~~iNiiDTPGH~DF~gEVer~l~~~DgaiLvVdA~eG-v~~QT~~vl~~A~~~~l~-~IvvINKiDr~~a-~ 150 (624)
. -.++.|+|+|||.-.-.-.-......|||||||+|.|- |||||+.+|.-..-.|++ +|++-||+|.-.. +
T Consensus 78 cg~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~~E~ 157 (415)
T COG5257 78 CGAETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVSRER 157 (415)
T ss_pred CCCCCCEEEEEEEEECCCHHHHHHHHHCCHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCEECHHH
T ss_conf 89973079999974079669999988602344215389995389898973187788776626533999952301115999
Q ss_pred HHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCCCCCC-CCHHHCCCCCC-C-
Q ss_conf 25689999988862267301104266887886591646742233486413555321024542233-20000011110-1-
Q gi|254780233|r 151 ADEVINEVFDLFSALDATDAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPPVIS-EGEFKMIGTIL-E- 227 (624)
Q Consensus 151 ~~~v~~ei~dlf~~l~a~de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~P~~~-e~pl~~~V~~i-~- 227 (624)
..+-.+||+......-|+ +.|+++.||.++ .+++.|+++|.+++|.|..+ +.|..|+|... |
T Consensus 158 AlE~y~qIk~FvkGt~Ae----~aPIIPiSA~~~-----------~NIDal~e~i~~~IptP~rd~~~~p~m~v~RSFDV 222 (415)
T COG5257 158 ALENYEQIKEFVKGTVAE----NAPIIPISAQHK-----------ANIDALIEAIEKYIPTPERDLDKPPRMYVARSFDV 222 (415)
T ss_pred HHHHHHHHHHHHCCCCCC----CCCEEEEHHHHC-----------CCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCC
T ss_conf 888799999986263347----995443256430-----------58799999999868998667899966999864035
Q ss_pred ------CCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCEEE-CC------CCCEEEECCCCCCCCCCCCCCCCCCC-CC
Q ss_conf ------367773499999607805159889996057850121-14------55301103665344411254554322-22
Q gi|254780233|r 228 ------KDPFLGRIVTGRIHSGTIKSNQNIKALSPDGALVEV-GR------VSKILAFRGIDRQPIDEAHAGDIVSI-AG 293 (624)
Q Consensus 228 ------~d~y~Gria~gRV~sGtlk~Gd~V~vl~~~g~~~~~-~k------V~~L~~~~G~~r~~v~ea~AGDIvaI-aG 293 (624)
.+.-.|-+.-|-+.+|.++.||++.+. | |-..+. .| .+++..... ...++++|.+|-.++| ++
T Consensus 223 NkPGt~~~~L~GGViGGsl~~G~l~vGDEIEIr-P-Gi~v~k~~k~~~~pi~T~i~Sl~a-g~~~~~ea~PGGLvgvGT~ 299 (415)
T COG5257 223 NKPGTPPEELKGGVIGGSLVQGVLRVGDEIEIR-P-GIVVEKGGKTVWEPITTEIVSLQA-GGEDVEEARPGGLVGVGTK 299 (415)
T ss_pred CCCCCCHHHCCCCEECCEEEEEEEECCCEEEEC-C-CEEEECCCCEEEEEEEEEEEEEEE-CCEEEEECCCCCEEEEECC
T ss_conf 899899777247432220255368538757854-8-817603992477871389999973-7766431268836877334
Q ss_pred CCCCCC-CCEECCC--CCCCCCCCC
Q ss_conf 332101-2211055--652112336
Q gi|254780233|r 294 LVKATV-ADTFCDP--SIDEPLKAQ 315 (624)
Q Consensus 294 l~~~~i-GDTL~~~--~~p~~Lp~i 315 (624)
|+-.-+ +|-|+-. +.|-.||++
T Consensus 300 lDP~ltKaD~L~G~V~G~pG~lPpv 324 (415)
T COG5257 300 LDPTLTKADALVGQVVGKPGTLPPV 324 (415)
T ss_pred CCCCHHHHHHHCCCCCCCCCCCCCC
T ss_conf 4842100123201202589889982
No 70
>KOG0459 consensus
Probab=99.97 E-value=1.3e-31 Score=226.77 Aligned_cols=282 Identities=23% Similarity=0.318 Sum_probs=208.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCC------CC---------CEECCCCHHHHHCCCEEEEEEEEEEECC
Q ss_conf 24314999854689877889999998396142322------00---------0003885779870960646799999899
Q gi|254780233|r 17 MQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQR------VS---------ERVMDCNDLEKERGITILAKVTSIVWND 81 (624)
Q Consensus 17 ~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~------v~---------~~vmD~~~~EreRGITI~a~~~~~~~~~ 81 (624)
.+--|+..+||||+||+|+-.++|+++|..+.+.. .. .++||++.+||++|-|+-.....|+...
T Consensus 77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~ 156 (501)
T KOG0459 77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETEN 156 (501)
T ss_pred CCCCEEEEEEEEECCCCCCCCEEEEEEEEECHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHCCCEEEEEEEEEEECC
T ss_conf 78744899999964401268736789865437789999999876133322489997376012102650541257887134
Q ss_pred EEEEEECCCCCCCCHHHHHHHHHHHCEEEEEEECCCCCC-------HHHHHHHHHHHHCCCC-EEEEEECCCCCCC----
Q ss_conf 799997289875407999999874217899997687886-------4789999999972997-8999975436674----
Q gi|254780233|r 82 VRINIVDTPGHADFGGEVERILCMVESVVVLVDAAEGPM-------PQTKFVVGKALKIGLR-PIVVVNKVDRSDA---- 149 (624)
Q Consensus 82 ~~iNiiDTPGH~DF~gEVer~l~~~DgaiLvVdA~eGv~-------~QT~~vl~~A~~~~l~-~IvvINKiDr~~a---- 149 (624)
.+++|+|+|||.-|.-+..-..+-+|.++||++|.-|-. -|||.+...|..+++. .||+|||||-|..
T Consensus 157 ~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs~ 236 (501)
T KOG0459 157 KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSN 236 (501)
T ss_pred EEEEEECCCCCCCCCHHHCCCCCHHHHHHHHHHHHHCHHHCCCCCCCCHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCH
T ss_conf 36776316765555600036611112332011320011210310366305789998862332579999950588667305
Q ss_pred -CHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHCCEECCCC---CCCCCCCCHHHHHHHHCCCCC-CCCCCCHHHCCCC
Q ss_conf -02568999998886226730110426688788659164674---223348641355532102454-2233200000111
Q gi|254780233|r 150 -RADEVINEVFDLFSALDATDAQLDFPILYGSGRFGWMSDSS---DGSRDQGMVPLLNLIVDHVPP-PVISEGEFKMIGT 224 (624)
Q Consensus 150 -~~~~v~~ei~dlf~~l~a~de~ld~Pv~~~Sa~~G~~~~~~---~~~~~~gl~~Lld~Ii~~iP~-P~~~e~pl~~~V~ 224 (624)
|+++..+++...+..++.+-. -|.-.+++|+..|.-..+. .-+|+.| ..+|+-+ +.+|. |..-++||++.|.
T Consensus 237 eRy~E~~~k~~~fLr~~g~n~~-~d~~f~p~sg~tG~~~k~~~~s~cpwy~g-p~fl~~l-d~l~~~~R~~~GP~~~pI~ 313 (501)
T KOG0459 237 ERYEECKEKLQPFLRKLGFNPK-PDKHFVPVSGLTGANVKDRTDSVCPWYKG-PIFLEYL-DELPHLERILNGPIRCPVA 313 (501)
T ss_pred HHHHHHHHHHHHHHHHHCCCCC-CCCEEEECCCCCCCCHHHCCCCCCCCCCC-CCCCEEH-HCCCCCCCCCCCCEEEEHH
T ss_conf 6689999999999998444689-98414202464555553446665884217-7555002-0267655468987785525
Q ss_pred CCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCC--CCCCCC--CCCC
Q ss_conf 101367773499999607805159889996057850121145530110366534441125455432--222332--1012
Q gi|254780233|r 225 ILEKDPFLGRIVTGRIHSGTIKSNQNIKALSPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVS--IAGLVK--ATVA 300 (624)
Q Consensus 225 ~i~~d~y~Gria~gRV~sGtlk~Gd~V~vl~~~g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIva--IaGl~~--~~iG 300 (624)
.-..| .|.+..|+|.||++++||++.+|..+ .. ..|.+||. +.++++.+.+||.+- +.|+++ +..|
T Consensus 314 ~Kykd--mGTvv~GKvEsGsi~kg~~lvvMPnk-~~---veV~~I~~----dd~E~~~~~pGenvk~rlkgieeedi~~G 383 (501)
T KOG0459 314 NKYKD--MGTVVGGKVESGSIKKGQQLVVMPNK-TN---VEVLGIYS----DDVETDRVAPGENVKLRLKGIEEEDISPG 383 (501)
T ss_pred HHCCC--CCEEEEEEECCCCEECCCEEEECCCC-CC---EEEEEEEC----CCCEEEECCCCCCEEEEECCCCHHHCCCC
T ss_conf 62055--65278878602603059847972588-62---57898751----65201001588515899645335424673
Q ss_pred CEECCCCCCCC
Q ss_conf 21105565211
Q gi|254780233|r 301 DTFCDPSIDEP 311 (624)
Q Consensus 301 DTL~~~~~p~~ 311 (624)
-.||++.+|..
T Consensus 384 fiL~~~~n~~~ 394 (501)
T KOG0459 384 FILCSPNNPCK 394 (501)
T ss_pred EEEECCCCCCC
T ss_conf 48706898555
No 71
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.96 E-value=2.5e-29 Score=211.71 Aligned_cols=280 Identities=28% Similarity=0.370 Sum_probs=211.2
Q ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEE---E----------
Q ss_conf 468024314999854689877889999998396142322000003885779870960646799999---8----------
Q gi|254780233|r 13 RLGYMQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIV---W---------- 79 (624)
Q Consensus 13 ~~~~~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~---~---------- 79 (624)
+-.+.+| |++..||||||||||+..|. +|..++.....-.++|-..-|-|||.|- ..|+. |
T Consensus 112 ~~~~~hv-~Vg~aGhVdhGKSTlvG~Lv--tG~~DDG~G~tR~~ldv~kHEverGlsa---~iS~~v~Gf~dgk~~rlkn 185 (527)
T COG5258 112 EEAPEHV-LVGVAGHVDHGKSTLVGVLV--TGRLDDGDGATRSYLDVQKHEVERGLSA---DISLRVYGFDDGKVVRLKN 185 (527)
T ss_pred CCCCCEE-EEEEECCCCCCCCEEEEEEE--ECCCCCCCCCHHHHHHHHHHHHHHCCCC---CEEEEEEEECCCCEEEECC
T ss_conf 5799638-99974244578635987898--4577788840211345416777616532---2269999724992676058
Q ss_pred -------------CCEEEEEECCCCCCCCHHHHHHHH--HHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf -------------997999972898754079999998--74217899997687886478999999997299789999754
Q gi|254780233|r 80 -------------NDVRINIVDTPGHADFGGEVERIL--CMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKV 144 (624)
Q Consensus 80 -------------~~~~iNiiDTPGH~DF~gEVer~l--~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKi 144 (624)
-|..+.|+||-||.-+---..|.| +-+|..+|+|.|.+||+--|+.++..|+..++|.||+|+|+
T Consensus 186 Pld~aE~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~ 265 (527)
T COG5258 186 PLDEAEKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTKI 265 (527)
T ss_pred CCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 52077776766520308999853786278998888873266662799998167730330676565646169779999952
Q ss_pred CC-CCCCHHHHHHHHHHHHHHCCC--------CHH----------HCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHH
Q ss_conf 36-674025689999988862267--------301----------10426688788659164674223348641355532
Q gi|254780233|r 145 DR-SDARADEVINEVFDLFSALDA--------TDA----------QLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLI 205 (624)
Q Consensus 145 Dr-~~a~~~~v~~ei~dlf~~l~a--------~de----------~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~I 205 (624)
|. |+.++..+++++..++.-.+- +|. +.-.|+++.|+-+| .|++ ||+.+
T Consensus 266 D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg-----------~Gld-lL~e~ 333 (527)
T COG5258 266 DMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTG-----------EGLD-LLDEF 333 (527)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCEEEEEEEECCCC-----------CCHH-HHHHH
T ss_conf 56827889999999999999743465355055326776543323782577999822457-----------5389-99999
Q ss_pred HCCCCCCC--CCCCHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEC-CCCCCEEECCCCCEEEECCCCCCCCCC
Q ss_conf 10245422--332000001111013677734999996078051598899960-578501211455301103665344411
Q gi|254780233|r 206 VDHVPPPV--ISEGEFKMIGTILEKDPFLGRIVTGRIHSGTIKSNQNIKALS-PDGALVEVGRVSKILAFRGIDRQPIDE 282 (624)
Q Consensus 206 i~~iP~P~--~~e~pl~~~V~~i~~d~y~Gria~gRV~sGtlk~Gd~V~vl~-~~g~~~~~~kV~~L~~~~G~~r~~v~e 282 (624)
...+|.-. ++++||.|+|.++.+-..+|.+..|.|.||.+..||+|++=. ++|+ .+..+|.+|.. .+..+++
T Consensus 334 f~~Lp~rr~~~d~g~flmYId~iYsVtGVGtVvsGsV~~G~l~~gd~vllGP~~~G~-fr~v~vkSIem----h~~rvds 408 (527)
T COG5258 334 FLLLPKRRRWDDEGPFLMYIDKIYSVTGVGTVVSGSVKSGILHVGDTVLLGPFKDGK-FREVVVKSIEM----HHYRVDS 408 (527)
T ss_pred HHHCCCCCCCCCCCCEEEEEEEEEEEEEEEEEEEEEEEEEEECCCCEEEECCCCCCC-EEEEEEEEEEE----EEEEECC
T ss_conf 974985002477897289987567774257898613776166059879974578995-79999999997----6677032
Q ss_pred CCCCCCCC--CCCCCC--CCCCCEECCCCCCCCCCCC
Q ss_conf 25455432--222332--1012211055652112336
Q gi|254780233|r 283 AHAGDIVS--IAGLVK--ATVADTFCDPSIDEPLKAQ 315 (624)
Q Consensus 283 a~AGDIva--IaGl~~--~~iGDTL~~~~~p~~Lp~i 315 (624)
|.||+|+. +.|++. +.-|-.|+....|.+...+
T Consensus 409 a~aG~iig~Al~gv~~e~lerGMVl~~~~~pkaVref 445 (527)
T COG5258 409 AKAGSIIGIALKGVEKEELERGMVLSAGADPKAVREF 445 (527)
T ss_pred CCCCCEEEEEECCCCHHHHHCCEEECCCCCCHHHHEE
T ss_conf 3577589999626687787345175279996044401
No 72
>KOG0461 consensus
Probab=99.95 E-value=3.6e-28 Score=204.12 Aligned_cols=251 Identities=25% Similarity=0.339 Sum_probs=180.2
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEE---EEEEEE------EECCEEEEE
Q ss_conf 02431499985468987788999999839614232200000388577987096064---679999------989979999
Q gi|254780233|r 16 YMQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITIL---AKVTSI------VWNDVRINI 86 (624)
Q Consensus 16 ~~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~---a~~~~~------~~~~~~iNi 86 (624)
+.| -|++|+||||+|||||+-+|-.. |. ....|.+++-+|||||.- |..+.. +-....+++
T Consensus 5 p~n-~N~GiLGHvDSGKTtLarals~~-~S--------TaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tl 74 (522)
T KOG0461 5 PSN-LNLGILGHVDSGKTTLARALSEL-GS--------TAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTL 74 (522)
T ss_pred CCE-EEEEEEEECCCCHHHHHHHHHHH-CC--------HHHHCCCCCCCCCCEEEEECCEEEECCCCCCCCCCCCCEEEE
T ss_conf 720-24435740257648999999863-14--------033224875310462674122044135723378766412699
Q ss_pred ECCCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC--CCCCHHHHHHHHHHHHHH
Q ss_conf 728987540799999987421789999768788647899999999729978999975436--674025689999988862
Q gi|254780233|r 87 VDTPGHADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDR--SDARADEVINEVFDLFSA 164 (624)
Q Consensus 87 iDTPGH~DF~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr--~~a~~~~v~~ei~dlf~~ 164 (624)
+|+|||+...--+..+..+.|-++||||++.|.|+||-..|-.+..+--+.+|+|||+|. ++.|...+......+-..
T Consensus 75 vDCPGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~qr~ski~k~~kk~~Kt 154 (522)
T KOG0461 75 VDCPGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPENQRASKIEKSAKKVRKT 154 (522)
T ss_pred EECCCHHHHHHHHHCCHHHHEEEEEEEEHHCCCCCCCCHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 71797088999997101200134678861017666521454437664462699995012265302456789999999977
Q ss_pred CCCCHHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCCCC-CCCCHHHCCCCCCCCCCCCCEEEEEEECCC
Q ss_conf 2673011042668878865916467422334864135553210245422-332000001111013677734999996078
Q gi|254780233|r 165 LDATDAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPPV-ISEGEFKMIGTILEKDPFLGRIVTGRIHSG 243 (624)
Q Consensus 165 l~a~de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~P~-~~e~pl~~~V~~i~~d~y~Gria~gRV~sG 243 (624)
|.++.---..|++..||+.|+. ...++..|-+++-+.+-.|. ++++||-|.|-....-...|.+.+|.|.+|
T Consensus 155 Le~t~f~g~~PI~~vsa~~G~~-------~~~~i~eL~e~l~s~if~P~Rd~~gpflm~vDHCF~IKGQGTV~TGTvl~G 227 (522)
T KOG0461 155 LESTGFDGNSPIVEVSAADGYF-------KEEMIQELKEALESRIFEPKRDEEGPFLMAVDHCFAIKGQGTVLTGTVLRG 227 (522)
T ss_pred HHHCCCCCCCCEEEEECCCCCC-------CHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEE
T ss_conf 8745768888526764378754-------066789999999976247776888875898642578626715886347876
Q ss_pred CCCCCCEEEEECCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 051598899960578501211455301103665344411254554322
Q gi|254780233|r 244 TIKSNQNIKALSPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSI 291 (624)
Q Consensus 244 tlk~Gd~V~vl~~~g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIvaI 291 (624)
+++.|+.+..-..+ ..-||..+..++ .+|.+|.+||-.++
T Consensus 228 ~~~ln~~iE~PAL~----e~rkVKslqmf~----~~vtsa~~GdR~g~ 267 (522)
T KOG0461 228 VLRLNTEIEFPALN----EKRKVKSLQMFK----QRVTSAAAGDRAGF 267 (522)
T ss_pred EEECCCEEEECCCC----HHHHHHHHHHHH----HHHHHHHCCCCEEE
T ss_conf 89628688504333----144444699875----12002321562243
No 73
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.95 E-value=9.9e-28 Score=201.27 Aligned_cols=176 Identities=24% Similarity=0.290 Sum_probs=124.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCC-EECCCCHHHHHCCCEEEEEE------------------------EE
Q ss_conf 999854689877889999998396142322000-00388577987096064679------------------------99
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSE-RVMDCNDLEKERGITILAKV------------------------TS 76 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~-~vmD~~~~EreRGITI~a~~------------------------~~ 76 (624)
||++||||||||||+.+|. +|... .|+... ..+..+..|.++|+|..-.. -.
T Consensus 2 v~v~GhVD~GKSTL~G~Lt--~g~lD-dGrg~ar~~~~rh~hE~~~G~Tssi~~~~lgf~~~g~~~~~~~~~~~~~~~~~ 78 (224)
T cd04165 2 VAVVGNVDAGKSTLLGVLT--QGELD-NGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEI 78 (224)
T ss_pred EEEEECCCCCHHHHHHHHH--CCCCC-CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEECCCCCCCCCCCEEE
T ss_conf 8999485884889999985--67742-22106777877618999726544115655401014532021347654422012
Q ss_pred EEECCEEEEEECCCCCCCCHHHHHHHHH--HHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC-CCHHH
Q ss_conf 9989979999728987540799999987--42178999976878864789999999972997899997543667-40256
Q gi|254780233|r 77 IVWNDVRINIVDTPGHADFGGEVERILC--MVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSD-ARADE 153 (624)
Q Consensus 77 ~~~~~~~iNiiDTPGH~DF~gEVer~l~--~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~-a~~~~ 153 (624)
++..++.|+|||+|||.+|.--..+.+. ..|.|+|||+|.+|+++||+.++..++.+++|.+|+|||||.-. ...++
T Consensus 79 ~~~~~k~it~iD~pGH~~y~kt~i~G~~~~~~d~~~LvV~A~~G~~~~T~ehl~l~~~l~ip~~vvitKiDl~~~~~l~~ 158 (224)
T cd04165 79 CEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAPANILQE 158 (224)
T ss_pred ECCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHH
T ss_conf 13678679999788739999999987635568989999317889779999999999983999899998977689899999
Q ss_pred HHHHHHHHHHHCCC---------CHHH------C----CHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCCC
Q ss_conf 89999988862267---------3011------0----4266887886591646742233486413555321024542
Q gi|254780233|r 154 VINEVFDLFSALDA---------TDAQ------L----DFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPP 212 (624)
Q Consensus 154 v~~ei~dlf~~l~a---------~de~------l----d~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~P 212 (624)
+++++..++..-+. .++. . -.|++..|+.+| .|++ +|...+..+|.+
T Consensus 159 ~~~~i~~~lk~p~~~k~p~~v~~~~d~~~~a~~~~~~~ivPIf~vS~VtG-----------~Gi~-~L~~fL~~LP~r 224 (224)
T cd04165 159 TLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTG-----------EGLD-LLHAFLNLLPLR 224 (224)
T ss_pred HHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHCCCCCCCCCEEEEECCCC-----------CCHH-HHHHHHHHCCCC
T ss_conf 99999999704475568702168588999986488677746799765898-----------7999-999999876999
No 74
>TIGR00487 IF-2 translation initiation factor IF-2; InterPro: IPR000178 Initiation factor 2 (IF-2) (gene infB) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-2 promotes the GTP-dependent binding of the initiator tRNA to the small subunit of the ribosome. IF-2 is a protein of about 70 to 95 Kd which contains a central GTP-binding domain flanked by a highly variable N-terminal domain and a more conserved C-terminal domain. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial IF-2 (IF-2(mt)) as well as to algal and plants chloroplast IF-2 (IF-2(chl)). Both IF-2(mt) and IF-2(chl) are encoded by nuclear genes and are produced as precursor proteins with a transit peptide. An exception are red algae where IF-2(chl) is encoded by the plastid genome .; GO: 0003743 translation initiation factor activity, 0005525 GTP binding, 0006413 translational initiation, 0005622 intracellular.
Probab=99.92 E-value=1.9e-24 Score=179.67 Aligned_cols=252 Identities=28% Similarity=0.314 Sum_probs=188.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCE--EEEEECCCCCCC
Q ss_conf 243149998546898778899999983961423220000038857798709606467999998997--999972898754
Q gi|254780233|r 17 MQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDV--RINIVDTPGHAD 94 (624)
Q Consensus 17 ~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~--~iNiiDTPGH~D 94 (624)
.+---+.|+||+|||||+|.|.+-...-.-.+. -|||-......+++++. .+.++|||||.-
T Consensus 88 ~~pp~~~~~gh~dhg~~~ll~~~~~~~~~~~~~----------------gg~~~~~g~y~~~~~~~~~~~~f~d~pgh~~ 151 (594)
T TIGR00487 88 PRPPVVTIMGHVDHGKTSLLDSIRKTKVAAGEA----------------GGITQHIGAYHVEKEDGKKWITFLDTPGHEA 151 (594)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCC----------------CCCHHHCCEEEEEECCCCEEEEEECCCCHHH
T ss_conf 247636885123554034565554100001113----------------6520101304566428843799840775367
Q ss_pred CHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCH
Q ss_conf 07999999874217899997687886478999999997299789999754366740256899999888622673011042
Q gi|254780233|r 95 FGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDF 174 (624)
Q Consensus 95 F~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~ 174 (624)
|..--.|...+.|-++|+|.|.+|++|||...+.+|...+.|.++++||+|+|.++|+.+..++.++ .+-..++.-+.
T Consensus 152 f~~~~~~g~~~~d~~~~~~~~~dg~~~~~~~~~~h~~~~~~p~~~~~n~~d~p~~~pd~~~~~~~~~--g~~~~~wgg~~ 229 (594)
T TIGR00487 152 FTLMRARGAKVTDIVVLVVAADDGVKPQTIEAISHAKAANVPLIVAVNKIDKPEANPDRVKQELSEY--GLVPEDWGGDT 229 (594)
T ss_pred HHHHHHCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHC--CCCCHHCCCCE
T ss_conf 7877633761001579998415564235688765333307736998612467667877899998751--77501127834
Q ss_pred HHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCC---CCCCCCCHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCEE
Q ss_conf 668878865916467422334864135553210245---42233200000111101367773499999607805159889
Q gi|254780233|r 175 PILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVP---PPVISEGEFKMIGTILEKDPFLGRIVTGRIHSGTIKSNQNI 251 (624)
Q Consensus 175 Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP---~P~~~e~pl~~~V~~i~~d~y~Gria~gRV~sGtlk~Gd~V 251 (624)
..++.|++.| .|+..|+|+|+-.-. -...+++.....+.....|..+|.++..-+.+|+++.||.+
T Consensus 230 ~~~~~~~~~g-----------~g~~~l~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~g~g~~~~~~~~~g~l~~gd~~ 298 (594)
T TIGR00487 230 IFVPVSALTG-----------DGIDELLDAILLQSEVEELKANPNGQASGTVLEAELDKGRGPVATVLVQSGTLRVGDSV 298 (594)
T ss_pred EEEEEECCCC-----------CCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCEECCCEE
T ss_conf 6886200136-----------76578888888764344432032322220256410013656324566614720116413
Q ss_pred EEECCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC-CCEECCC
Q ss_conf 996057850121145530110366534441125455432222332101-2211055
Q gi|254780233|r 252 KALSPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSIAGLVKATV-ADTFCDP 306 (624)
Q Consensus 252 ~vl~~~g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIvaIaGl~~~~i-GDTL~~~ 306 (624)
.+-. .-+|+..+..-.| ..++++.+.-.+.+.|+.+... ||-+.-.
T Consensus 299 ~~g~------~~g~~~~~~~~~g---~~~~~~~p~~~~~~~g~~~~p~~g~~~~~~ 345 (594)
T TIGR00487 299 VLGA------AYGKVRALIDENG---KSVKEAGPSKPVEILGLSDVPAAGDEFLVF 345 (594)
T ss_pred EEEC------CCCHHHHHHHHCC---CHHHHCCCCCEEEEECCCCCCCCCCEEEEE
T ss_conf 5203------2110000120024---211212765215551355667677504775
No 75
>cd03710 BipA_TypA_C BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the elongation factors EF-G and EF-2. A member of the ribosome binding GTPase superfamily, BipA is widely distributed in bacteria and plants. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secreti
Probab=99.91 E-value=3.1e-24 Score=178.34 Aligned_cols=79 Identities=57% Similarity=0.991 Sum_probs=77.8
Q ss_pred CEEEEEEEECCHHHHHHHHHHHHHCCCEECCCCCCCCCEEEEEEEECHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCC
Q ss_conf 4168888731323310789988743540104213689849999996133565688998853276167888870530135
Q gi|254780233|r 413 EPIEEVVIDVDEEHSGAVVQKMTLHKSEMIELRPSGTGRVRLVFLSPTRGLIGYQSQLMTDTRGTAIMNRLFHSYQPHK 491 (624)
Q Consensus 413 EPie~v~I~vp~ey~G~Vi~~l~~RrG~i~~m~~~~~g~~~l~~~vP~r~l~g~~~~l~s~T~G~g~~~~~f~~Y~p~~ 491 (624)
|||++++|+||+||+|+||++|++|||++++|++.++++++++|.+|+|+|+||+++|+|+|+|+|+|+++|++|+||+
T Consensus 1 EP~~~~~I~~P~e~~G~V~~~l~~Rrg~i~~~~~~~~~~~~l~~~iP~r~l~Gf~~~Lrs~T~G~a~~~~~f~~Y~P~~ 79 (79)
T cd03710 1 EPIEELTIDVPEEYSGAVIEKLGKRKGEMVDMEPDGNGRTRLEFKIPSRGLIGFRSEFLTDTRGTGIMNHVFDGYEPYK 79 (79)
T ss_pred CCEEEEEEEECHHHHHHHHHHHHHCCEEEECCEECCCCEEEEEEECCHHHHHCCHHHHHHHCCCEEEEEEEECCEECCC
T ss_conf 9859999994678868999878738809973484699639999988978872517875643677599999955623389
No 76
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=99.88 E-value=4.2e-23 Score=170.89 Aligned_cols=86 Identities=42% Similarity=0.802 Sum_probs=81.8
Q ss_pred HHCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00011110136777349999960780515988999605785012114553011036653444112545543222233210
Q gi|254780233|r 219 FKMIGTILEKDPFLGRIVTGRIHSGTIKSNQNIKALSPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSIAGLVKAT 298 (624)
Q Consensus 219 l~~~V~~i~~d~y~Gria~gRV~sGtlk~Gd~V~vl~~~g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIvaIaGl~~~~ 298 (624)
|||+||+++||||+||++++||+||+|++||+|++++++++. +.+||++||.|+|++++++++|.|||||+++|++++.
T Consensus 1 f~mlv~~~~~d~~~Gri~~~RV~sG~lk~gd~v~~~~~~~~~-~~~rv~~l~~~~g~~~~~v~~a~AGDIvai~Gl~~~~ 79 (86)
T cd03691 1 LQMLVTTLDYDDYVGRIAIGRIFRGTVKVGQQVAVVKRDGKI-EKAKITKLFGFEGLKRVEVEEAEAGDIVAIAGIEDIT 79 (86)
T ss_pred CCEEEEEEECCCCCCEEEEEEEECCCCCCCCEEEEECCCCCE-EECCCEEEEEEECCCCEEEEEECCCCEEEECCCCCCC
T ss_conf 968999810188775599999846951799989996167826-7622307689606985697187599999994888886
Q ss_pred CCCEECC
Q ss_conf 1221105
Q gi|254780233|r 299 VADTFCD 305 (624)
Q Consensus 299 iGDTL~~ 305 (624)
+|||||+
T Consensus 80 iGdTl~D 86 (86)
T cd03691 80 IGDTICD 86 (86)
T ss_pred CCCCCCC
T ss_conf 5471369
No 77
>KOG1144 consensus
Probab=99.86 E-value=1.9e-21 Score=160.09 Aligned_cols=233 Identities=23% Similarity=0.288 Sum_probs=151.7
Q ss_pred CCCCC--EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEE---------------
Q ss_conf 02431--4999854689877889999998396142322000003885779870960646799999---------------
Q gi|254780233|r 16 YMQIR--NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIV--------------- 78 (624)
Q Consensus 16 ~~~IR--NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~--------------- 78 (624)
.+++| =+||+||||.|||-|.|.+ +.+.+. -|. .-|||-.-..|.|.
T Consensus 470 ~~~lRSPIcCilGHVDTGKTKlld~i-r~tNVq--ege-------------aggitqqIgAt~fp~~ni~e~tk~~~~~~ 533 (1064)
T KOG1144 470 TENLRSPICCILGHVDTGKTKLLDKI-RGTNVQ--EGE-------------AGGITQQIGATYFPAENIREKTKELKKDA 533 (1064)
T ss_pred HHHCCCCEEEEEECCCCCCHHHHHHH-HCCCCC--CCC-------------CCCEEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf 13236863789711126605788876-205532--244-------------56600000541152677899999987502
Q ss_pred ---ECCEEEEEECCCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC-------CC
Q ss_conf ---89979999728987540799999987421789999768788647899999999729978999975436-------67
Q gi|254780233|r 79 ---WNDVRINIVDTPGHADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDR-------SD 148 (624)
Q Consensus 79 ---~~~~~iNiiDTPGH~DF~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr-------~~ 148 (624)
++---+-+||||||--|+-=-.|..+.||-||||||-..|.+|||-.-+......+.|.||++||+|| ++
T Consensus 534 K~~~kvPg~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~ 613 (1064)
T KOG1144 534 KKRLKVPGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPN 613 (1064)
T ss_pred HHHCCCCEEEEECCCCCHHHHHHHHCCCCCCCEEEEEEEHHCCCCCCHHHHHHHHHHCCCCEEEEEHHHHHHCCCCCCCC
T ss_conf 33137870489658872555556650433455377785311167742067899887548975986101344404424898
Q ss_pred CCHHHHH---------------HHHHHHHHHCCCCHHHC--------CHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHH
Q ss_conf 4025689---------------99998886226730110--------426688788659164674223348641355532
Q gi|254780233|r 149 ARADEVI---------------NEVFDLFSALDATDAQL--------DFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLI 205 (624)
Q Consensus 149 a~~~~v~---------------~ei~dlf~~l~a~de~l--------d~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~I 205 (624)
+.+.+.+ +.|.--|.+-|.+-++. -|.++++||..| .|+..|+-.|
T Consensus 614 ~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sG-----------eGipdLl~ll 682 (1064)
T KOG1144 614 APIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISG-----------EGIPDLLLLL 682 (1064)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEECCCCCCEEEEEECCCCCC-----------CCHHHHHHHH
T ss_conf 31999998744789999999999999999971104434231467465588621221367-----------8807899999
Q ss_pred HCCCCCCCCC----CCHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCEEECCCCCEEEECCCCC
Q ss_conf 1024542233----20000011110136777349999960780515988999605785012114553011036653
Q gi|254780233|r 206 VDHVPPPVIS----EGEFKMIGTILEKDPFLGRIVTGRIHSGTIKSNQNIKALSPDGALVEVGRVSKILAFRGIDR 277 (624)
Q Consensus 206 i~~iP~P~~~----e~pl~~~V~~i~~d~y~Gria~gRV~sGtlk~Gd~V~vl~~~g~~~~~~kV~~L~~~~G~~r 277 (624)
++..-.--.. -..++..|.-+-.-+..|...-+-+.+|.|+.||.+.+|.-+|.... .|..|++++-++-
T Consensus 683 v~ltQk~m~~kl~y~~ev~cTVlEVKvieG~GtTIDViLvNG~L~eGD~IvvcG~~GpIvT--tIRaLLtP~PlkE 756 (1064)
T KOG1144 683 VQLTQKTMVEKLAYVDEVQCTVLEVKVIEGHGTTIDVILVNGELHEGDQIVVCGLQGPIVT--TIRALLTPQPLKE 756 (1064)
T ss_pred HHHHHHHHHHHHHHHHHEEEEEEEEEEECCCCCEEEEEEECCEECCCCEEEECCCCCCHHH--HHHHHCCCCCHHH
T ss_conf 9999999998774240100478998752377716899987565526987998279986168--8897638864476
No 78
>cd03709 lepA_C lepA_C: This family represents the C-terminal region of LepA, a GTP-binding protein localized in the cytoplasmic membrane. LepA is ubiquitous in Bacteria and Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is missing from Archaea. LepA exhibits significant homology to elongation factors (EFs) Tu and G. The function(s) of the proteins in this family are unknown. The N-terminal domain of LepA is homologous to a domain of similar size found in initiation factor 2 (IF2), and in EF-Tu and EF-G (factors required for translation in Escherichia coli). Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including S. cerevisiae GUF1) originated within the bacterial LepA family. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=99.85 E-value=3.1e-21 Score=158.67 Aligned_cols=78 Identities=18% Similarity=0.266 Sum_probs=75.8
Q ss_pred CEEEEEEEECCHHHHHHHHHHHHHCCCEECCCCCCCCCEEEEEEEECHHHH-HHHHHHHHHHCCCCEEEEEEEECCCCC
Q ss_conf 416888873132331078998874354010421368984999999613356-568899885327616788887053013
Q gi|254780233|r 413 EPIEEVVIDVDEEHSGAVVQKMTLHKSEMIELRPSGTGRVRLVFLSPTRGL-IGYQSQLMTDTRGTAIMNRLFHSYQPH 490 (624)
Q Consensus 413 EPie~v~I~vp~ey~G~Vi~~l~~RrG~i~~m~~~~~g~~~l~~~vP~r~l-~g~~~~l~s~T~G~g~~~~~f~~Y~p~ 490 (624)
|||++++|.+|+||+|+||++|++|||++++|++.+.+++.+.|++|.+|| +||.++|+|+|+|+|+|+++|++|+|-
T Consensus 1 EPi~~~~I~~P~ey~G~V~~ll~~rRG~~~~~~~~~~~~~~i~~~vPlaE~~~~f~~~LkS~T~G~as~~~e~~~y~~a 79 (80)
T cd03709 1 EPFVKATIITPSEYLGAIMELCQERRGVQKDMEYLDANRVMLTYELPLAEIVYDFFDKLKSISKGYASLDYELIGYRES 79 (80)
T ss_pred CCEEEEEEECCHHHHHHHHHHHHHHHCEEECCEECCCCEEEEEEECCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCC
T ss_conf 9869999968589899999999984257725465489879999994479976547787664356629999874462358
No 79
>smart00838 EFG_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold.
Probab=99.85 E-value=3.7e-21 Score=158.15 Aligned_cols=84 Identities=26% Similarity=0.414 Sum_probs=80.1
Q ss_pred ECCEEEEEEEECCHHHHHHHHHHHHHCCCEECCCCCCCCCEEEEEEEECHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC
Q ss_conf 60416888873132331078998874354010421368984999999613356568899885327616788887053013
Q gi|254780233|r 411 LLEPIEEVVIDVDEEHSGAVVQKMTLHKSEMIELRPSGTGRVRLVFLSPTRGLIGYQSQLMTDTRGTAIMNRLFHSYQPH 490 (624)
Q Consensus 411 ~lEPie~v~I~vp~ey~G~Vi~~l~~RrG~i~~m~~~~~g~~~l~~~vP~r~l~g~~~~l~s~T~G~g~~~~~f~~Y~p~ 490 (624)
+||||++++|.||++|+|+||++|++|||++.+|++.++ ...+.+.+|.++++||+++|+|.|+|+|+|+++|+||+|+
T Consensus 1 LLEPi~~~~I~~P~~~~G~V~~~l~~RRG~i~~~~~~~~-~~~i~a~vP~~e~~gf~~~Lrs~T~G~g~~~~~f~~ye~v 79 (85)
T smart00838 1 LLEPIMKVEVTVPEEYMGDVIGDLNSRRGKIEGMEQRGG-AQVIKAKVPLSEMFGYATDLRSATQGRATWSMEFSHYEEV 79 (85)
T ss_pred CCCCEEEEEEEECHHHHHHHHHHHHHCCCEEEEEEECCC-EEEEEEEEEHHHHHHHHHHHHHHCCCCEEEEEEECCCCCC
T ss_conf 978769999997889999999998865828970574599-0999999877887549999996488938999997568409
Q ss_pred CCCCC
Q ss_conf 57878
Q gi|254780233|r 491 KGEIG 495 (624)
Q Consensus 491 ~g~i~ 495 (624)
|+++.
T Consensus 80 P~~~~ 84 (85)
T smart00838 80 PKSIA 84 (85)
T ss_pred CHHHC
T ss_conf 95677
No 80
>TIGR00491 aIF-2 translation initiation factor aIF-2; InterPro: IPR004544 Initiation factor 2 (IF-2) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-2 promotes the GTP-dependent binding of the initiator tRNA to the small subunit of the ribosome. IF-2 is a protein of about 70 to 95 Kd which contains a central GTP-binding domain flanked by a highly variable N-terminal domain and a more conserved C-terminal domain. Some members of this family undergo protein self splicing that involves a post-translational excision of the intein followed by peptide ligation.; GO: 0003743 translation initiation factor activity, 0005525 GTP binding, 0006413 translational initiation, 0005622 intracellular.
Probab=99.85 E-value=2.3e-21 Score=159.51 Aligned_cols=237 Identities=26% Similarity=0.354 Sum_probs=152.3
Q ss_pred CCEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCC-CCCCCCCCEECCCCHHHHHCCCE--EEEEEEEE----
Q ss_conf 404653134680243149998546898778899999983961-42322000003885779870960--64679999----
Q gi|254780233|r 5 DGLFFIYGRLGYMQIRNIAIIAHVDHGKTTLVDELLKQSGVF-RDNQRVSERVMDCNDLEKERGIT--ILAKVTSI---- 77 (624)
Q Consensus 5 ~~~~~~~~~~~~~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~-~~~~~v~~~vmD~~~~EreRGIT--I~a~~~~~---- 77 (624)
||..|.+..-...-|-| +|+-| -|||.|++ +.|-+. ++.| ||| |-|.-+++
T Consensus 541 dGyvydlttethnfian-Givvh----nTTLLDkI-Rks~Vv~kEAG----------------giTQhiGAsevP~dVI~ 598 (1145)
T TIGR00491 541 DGYVYDLTTETHNFIAN-GIVVH----NTTLLDKI-RKSAVVKKEAG----------------GITQHIGASEVPLDVIK 598 (1145)
T ss_pred CCEEEEECCCHHHHHHC-CEEEE----CCCCCCCC-CCCCEEEECCC----------------CCCEECCCEECCHHHHH
T ss_conf 76267401000123226-64785----14331000-33401324778----------------84010066654668986
Q ss_pred -----EECCEEEE-------EECCCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf -----98997999-------972898754079999998742178999976878864789999999972997899997543
Q gi|254780233|r 78 -----VWNDVRIN-------IVDTPGHADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVD 145 (624)
Q Consensus 78 -----~~~~~~iN-------iiDTPGH~DF~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiD 145 (624)
-|+..++. +||||||.-|+.=--|.=++||-|+||||=.||.+|||...+.-...+..|-||+-||||
T Consensus 599 ~ic~Dl~K~f~i~~~iPGLLfIDTPGHeaFt~LRkRGGAlADlAILvVDInEGfkpQT~EA~~ILr~~ktPFvVAANKID 678 (1145)
T TIGR00491 599 KICGDLLKKFKIKLKIPGLLFIDTPGHEAFTNLRKRGGALADLAILVVDINEGFKPQTEEALNILRSFKTPFVVAANKID 678 (1145)
T ss_pred HHCHHHHHCEEEEEECCEEEEEECCCCHHHHCCCCCCCHHHHHHEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 51321211402578658015860786234422010010363011013410269840348999996128987289503305
Q ss_pred C-CCCC------H------------HHHHHHHHHHHHH-----CCCCHHHC----CH----HHHHHHHHCCEECCCCCCC
Q ss_conf 6-6740------2------------5689999988862-----26730110----42----6688788659164674223
Q gi|254780233|r 146 R-SDAR------A------------DEVINEVFDLFSA-----LDATDAQL----DF----PILYGSGRFGWMSDSSDGS 193 (624)
Q Consensus 146 r-~~a~------~------------~~v~~ei~dlf~~-----l~a~de~l----d~----Pv~~~Sa~~G~~~~~~~~~ 193 (624)
| ++.+ | +..-++++.|... .|.+.|.. || .|++.||.+|
T Consensus 679 rI~GW~~~e~~~fl~~~~kq~~~~~~~l~~~~y~lv~~kPL~e~GF~AerFdRv~Dft~tVaviPvSA~tG--------- 749 (1145)
T TIGR00491 679 RIPGWKSHEGRPFLESYEKQEQRVKQNLDKKVYNLVIKKPLAEEGFEAERFDRVRDFTRTVAVIPVSAVTG--------- 749 (1145)
T ss_pred CCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCEECEEEEEEEEEEECCCC---------
T ss_conf 58896454885166665411167886688778988730221125887122552000011368988665678---------
Q ss_pred CCCCCHHHHHHHHC----CCCCC-C-CCCCHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCEEECCCC
Q ss_conf 34864135553210----24542-2-332000001111013677734999996078051598899960578501211455
Q gi|254780233|r 194 RDQGMVPLLNLIVD----HVPPP-V-ISEGEFKMIGTILEKDPFLGRIVTGRIHSGTIKSNQNIKALSPDGALVEVGRVS 267 (624)
Q Consensus 194 ~~~gl~~Lld~Ii~----~iP~P-~-~~e~pl~~~V~~i~~d~y~Gria~gRV~sGtlk~Gd~V~vl~~~g~~~~~~kV~ 267 (624)
+|+..||-+++- |+-.- + .-|+|-++-|--+--...+|.-+=.=||.|++|+||.+.++..++-.. .||.
T Consensus 750 --EGIpelL~~l~GLAQ~YL~~~Lkl~~eG~AkGtiLEVKEe~GLG~T~DaviYdGilk~~D~iv~~~~d~viv--T~vk 825 (1145)
T TIGR00491 750 --EGIPELLLILAGLAQKYLEEKLKLEVEGPAKGTILEVKEEKGLGVTIDAVIYDGILKKGDIIVLAGKDDVIV--TRVK 825 (1145)
T ss_pred --CCHHHHHHHHHHHHHHHHHHHCCEEECCCCCEEEEEEEEECCCCCEEEEEEECCEECCCCEEEEECCCCCEE--EEEE
T ss_conf --974899999988888998852674222786515898785068971699999557712078899813898057--6678
Q ss_pred CEEEECCCC
Q ss_conf 301103665
Q gi|254780233|r 268 KILAFRGID 276 (624)
Q Consensus 268 ~L~~~~G~~ 276 (624)
.|+.+.-++
T Consensus 826 AlLkP~Pl~ 834 (1145)
T TIGR00491 826 ALLKPRPLE 834 (1145)
T ss_pred EECCCCCHH
T ss_conf 634888836
No 81
>pfam00679 EFG_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold.
Probab=99.84 E-value=7.7e-21 Score=156.02 Aligned_cols=88 Identities=34% Similarity=0.571 Sum_probs=84.2
Q ss_pred EECCEEEEEEEECCHHHHHHHHHHHHHCCCEECCCCCCCCCEEEEEEEECHHHHHHHHHHHHHHCCCCEEEEEEEECCCC
Q ss_conf 26041688887313233107899887435401042136898499999961335656889988532761678888705301
Q gi|254780233|r 410 SLLEPIEEVVIDVDEEHSGAVVQKMTLHKSEMIELRPSGTGRVRLVFLSPTRGLIGYQSQLMTDTRGTAIMNRLFHSYQP 489 (624)
Q Consensus 410 ~~lEPie~v~I~vp~ey~G~Vi~~l~~RrG~i~~m~~~~~g~~~l~~~vP~r~l~g~~~~l~s~T~G~g~~~~~f~~Y~p 489 (624)
.+||||++++|.||++|+|+|+++|++|||++.++++.++++++|+|.+|+|+++||+++|+++|+|+|+|+++|++|+|
T Consensus 1 ~llEP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~~i~~~iP~~~~~gf~~~L~s~T~G~a~~~~~f~~y~~ 80 (89)
T pfam00679 1 VLLEPIMKVEITVPEEYLGDVIGDLNKRRGEILDMEPIGGGRVVIEAEVPLAELFGFSTELRSLTQGRGSFSMEFSGYEP 80 (89)
T ss_pred CEECCEEEEEEEECHHHHHHHHHHHHHHCCEEECCEECCCCEEEEEEEEEHHHHHHHHHHHHHCCCCCCEEEEEECCEEE
T ss_conf 96782899999988899999999998706835574775898799999972157667875886138997189999535037
Q ss_pred CCCCCCCC
Q ss_conf 35787877
Q gi|254780233|r 490 HKGEIGGR 497 (624)
Q Consensus 490 ~~g~i~~r 497 (624)
++|+...+
T Consensus 81 ~~~~~~~~ 88 (89)
T pfam00679 81 VPGDILDR 88 (89)
T ss_pred CCCCHHHC
T ss_conf 89793443
No 82
>cd04097 mtEFG1_C mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals (desig
Probab=99.84 E-value=6.2e-21 Score=156.66 Aligned_cols=78 Identities=23% Similarity=0.405 Sum_probs=75.3
Q ss_pred CEEEEEEEECCHHHHHHHHHHHHHCCCEECCCCCCCCCEEEEEEEECHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCC
Q ss_conf 4168888731323310789988743540104213689849999996133565688998853276167888870530135
Q gi|254780233|r 413 EPIEEVVIDVDEEHSGAVVQKMTLHKSEMIELRPSGTGRVRLVFLSPTRGLIGYQSQLMTDTRGTAIMNRLFHSYQPHK 491 (624)
Q Consensus 413 EPie~v~I~vp~ey~G~Vi~~l~~RrG~i~~m~~~~~g~~~l~~~vP~r~l~g~~~~l~s~T~G~g~~~~~f~~Y~p~~ 491 (624)
|||++++|.||+||+|+||++|++|||++++|++.+ +++.|.+++|.++|+||.++|+|+|+|+|+|+++|+||+|+|
T Consensus 1 EPi~~v~I~vP~e~~G~V~~~l~~RRG~i~~~~~~~-~~~~i~a~vP~~el~gy~~~Lrs~T~G~g~~s~~f~~y~~vP 78 (78)
T cd04097 1 EPIMKVEVTAPTEFQGNVIGLLNKRKGTIVDTDTGE-DEFTLEAEVPLNDMFGYSTELRSMTQGKGEFSMEFSRYAPVP 78 (78)
T ss_pred CCEEEEEEECCHHHHHHHHHHHHHCCCEEECCCCCC-CEEEEEEEECHHHHHCCHHHHHHHCCCEEEEEEEECCCCCCC
T ss_conf 986999997627987899999877687877720359-959999994878861428987866578189999824544497
No 83
>cd03711 Tet_C Tet_C: C-terminus of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to the C terminal domains of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=99.81 E-value=1e-19 Score=148.62 Aligned_cols=78 Identities=22% Similarity=0.350 Sum_probs=74.9
Q ss_pred CEEEEEEEECCHHHHHHHHHHHHHCCCEECCCCCCCCCEEEEEEEECHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCC
Q ss_conf 4168888731323310789988743540104213689849999996133565688998853276167888870530135
Q gi|254780233|r 413 EPIEEVVIDVDEEHSGAVVQKMTLHKSEMIELRPSGTGRVRLVFLSPTRGLIGYQSQLMTDTRGTAIMNRLFHSYQPHK 491 (624)
Q Consensus 413 EPie~v~I~vp~ey~G~Vi~~l~~RrG~i~~m~~~~~g~~~l~~~vP~r~l~g~~~~l~s~T~G~g~~~~~f~~Y~p~~ 491 (624)
|||+++.|.||+||+|+||++|++|||++.+++..+ ++++|++.+|+++|+||.++|+|+|+|+|+|+++|++|+|+.
T Consensus 1 EPi~~~~i~vP~e~~G~v~~~L~~rrg~i~~~~~~~-~~~~i~~~~P~ae~~~y~~~Lrs~T~G~g~~~~~f~~Y~Pc~ 78 (78)
T cd03711 1 EPYLRFELEVPQDALGRAMSDLAKMGATFEDPQIKG-DEVTLEGTIPVATSQDYQSELPSYTHGEGVLETEFKGYRPCH 78 (78)
T ss_pred CCEEEEEEECCHHHHHHHHHHHHHCCCEEECCEECC-CEEEEEEEECHHHHHHHHHHHHHHCCCEEEEEEEECCEECCC
T ss_conf 984999998258989999999987698876808839-969999998778863188971754888599998979733789
No 84
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.80 E-value=1.8e-18 Score=140.40 Aligned_cols=156 Identities=28% Similarity=0.313 Sum_probs=112.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCC--------
Q ss_conf 499985468987788999999839614232200000388577987096064679999989979999728987--------
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGH-------- 92 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH-------- 92 (624)
+|||+|+..+|||||..+|+ |.- ...+. ...|.|.......+.|++.++.|+||||-
T Consensus 4 ~V~ivG~pN~GKSTL~N~l~---g~~--~~~vs----------~~pgtTr~~~~~~~~~~~~~~~~vDtpGi~~~~~~~~ 68 (174)
T cd01895 4 RIAIIGRPNVGKSSLVNALL---GEE--RVIVS----------DIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEE 68 (174)
T ss_pred EEEEECCCCCCHHHHHHHHH---CCC--CEEEC----------CCCCCEEECCEEEEEECCEEEEEEECCCCCCCCCCCC
T ss_conf 99999899998999999983---898--44434----------9999157332899999998899985788421344210
Q ss_pred -CCCH--HHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCC---HHHHHHHHHHHHHHCC
Q ss_conf -5407--999999874217899997687886478999999997299789999754366740---2568999998886226
Q gi|254780233|r 93 -ADFG--GEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDAR---ADEVINEVFDLFSALD 166 (624)
Q Consensus 93 -~DF~--gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~---~~~v~~ei~dlf~~l~ 166 (624)
.++. -...++++-+|.+++||||.+|+..|...++....+.+.|.++++||+|..+.. .+++.+++.+.|..+
T Consensus 69 ~~e~~~~~~~~~~i~~~dvil~viDa~~~~~~~d~~i~~~l~~~~~p~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~- 147 (174)
T cd01895 69 GIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFL- 147 (174)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECEECCCCCHHHHHHHHHHHHHHHCCC-
T ss_conf 6889999999999984286589975898998899999999998599869998567526764778999999999873416-
Q ss_pred CCHHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 730110426688788659164674223348641355532102
Q gi|254780233|r 167 ATDAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDH 208 (624)
Q Consensus 167 a~de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~ 208 (624)
...|+++.||++| .|++.|+++|.+-
T Consensus 148 -----~~~~ii~iSA~~g-----------~Gi~~L~~~I~ei 173 (174)
T cd01895 148 -----DYAPIVFISALTG-----------QGVDKLFDAIDEV 173 (174)
T ss_pred -----CCCCEEEEECCCC-----------CCHHHHHHHHHHH
T ss_conf -----8992899974479-----------8999999999986
No 85
>cd03713 EFG_mtEFG_C EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation factor (EF) EF-G. Included in this group is the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2) proteins. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide
Probab=99.79 E-value=2.6e-19 Score=146.03 Aligned_cols=78 Identities=23% Similarity=0.383 Sum_probs=75.0
Q ss_pred CEEEEEEEECCHHHHHHHHHHHHHCCCEECCCCCCCCCEEEEEEEECHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCC
Q ss_conf 4168888731323310789988743540104213689849999996133565688998853276167888870530135
Q gi|254780233|r 413 EPIEEVVIDVDEEHSGAVVQKMTLHKSEMIELRPSGTGRVRLVFLSPTRGLIGYQSQLMTDTRGTAIMNRLFHSYQPHK 491 (624)
Q Consensus 413 EPie~v~I~vp~ey~G~Vi~~l~~RrG~i~~m~~~~~g~~~l~~~vP~r~l~g~~~~l~s~T~G~g~~~~~f~~Y~p~~ 491 (624)
|||++++|+||++|+|+||++|++|||++.+|+.. .+++.|.+.+|+++++||.++|+|+|+|+|+|+++|+||+|++
T Consensus 1 EP~~~~~I~~p~e~~g~v~~~l~~rrg~i~~~~~~-~~~~~i~~~iP~~e~~gf~~~Lrs~T~G~a~~~~~f~~y~~~p 78 (78)
T cd03713 1 EPIMKVEVTVPEEYMGDVIGDLSSRRGQILGTESR-GGWKVIKAEVPLAEMFGYSTDLRSLTQGRGSFTMEFSHYEEVP 78 (78)
T ss_pred CCEEEEEEEECHHHHHHHHHHHHHCCCCEECCEEC-CCEEEEEEECCHHHHHCHHHHHHHHCCCCEEEEEEECCCCCCC
T ss_conf 99799999978899999999998706822530335-8809999990868874789998875889189998834430085
No 86
>KOG0466 consensus
Probab=99.79 E-value=1.2e-19 Score=148.21 Aligned_cols=241 Identities=26% Similarity=0.370 Sum_probs=159.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEE-----EE---------EC-----
Q ss_conf 149998546898778899999983961423220000038857798709606467999-----99---------89-----
Q gi|254780233|r 20 RNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTS-----IV---------WN----- 80 (624)
Q Consensus 20 RNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~-----~~---------~~----- 80 (624)
-||+.||||-|||+|++.++ ||+-. + ...-|-||-|||+...+. ++ |+
T Consensus 39 iNIGTIGHVAHGKSTvVkAi---SGv~T----v------rFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~ 105 (466)
T KOG0466 39 INIGTIGHVAHGKSTVVKAI---SGVHT----V------RFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSS 105 (466)
T ss_pred EEECCEECCCCCCCEEEEEE---CCCEE----E------EEHHHHHCCEEEEECCCCCEEEECCCCCCCCCCHHHCCCCC
T ss_conf 43021110025740244540---46148----8------71334421526885135445785589889996630204789
Q ss_pred -------------C-----EEEEEECCCCCCCCHHHHHHHHHHHCEEEEEEECCCC-CCHHHHHHHHHHHHCCCC-EEEE
Q ss_conf -------------9-----7999972898754079999998742178999976878-864789999999972997-8999
Q gi|254780233|r 81 -------------D-----VRINIVDTPGHADFGGEVERILCMVESVVVLVDAAEG-PMPQTKFVVGKALKIGLR-PIVV 140 (624)
Q Consensus 81 -------------~-----~~iNiiDTPGH~DF~gEVer~l~~~DgaiLvVdA~eG-v~~QT~~vl~~A~~~~l~-~Ivv 140 (624)
+ .++.++|+|||-=.-.-.-....+.|+|+|++.|.|- |||||-.+|.-..-+.|+ +|+.
T Consensus 106 k~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~Lkhiiil 185 (466)
T KOG0466 106 KEDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHIIIL 185 (466)
T ss_pred CCCCCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCEEEEE
T ss_conf 99999865689987458999877514796188998874326775433410104888989850667888778631418998
Q ss_pred EECCCCCCCC-HHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCCCCCC-CCH
Q ss_conf 9754366740-25689999988862267301104266887886591646742233486413555321024542233-200
Q gi|254780233|r 141 VNKVDRSDAR-ADEVINEVFDLFSALDATDAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPPVIS-EGE 218 (624)
Q Consensus 141 INKiDr~~a~-~~~v~~ei~dlf~~l~a~de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~P~~~-e~p 218 (624)
-||+|.-... ..+-.++++.......|+ ..|+++.||--+ .+++.+.|.|+.++|-|..+ ..|
T Consensus 186 QNKiDli~e~~A~eq~e~I~kFi~~t~ae----~aPiiPisAQlk-----------yNId~v~eyivkkIPvPvRdf~s~ 250 (466)
T KOG0466 186 QNKIDLIKESQALEQHEQIQKFIQGTVAE----GAPIIPISAQLK-----------YNIDVVCEYIVKKIPVPVRDFTSP 250 (466)
T ss_pred ECHHHHHHHHHHHHHHHHHHHHHHCCCCC----CCCEEEEHHHHC-----------CCHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 21233543778898899999997456557----995210136433-----------676799999986189882014789
Q ss_pred HHCCCCCC--------CCCCCCCEEEEEEECCCCCCCCCEEEEE----CCC--CCCEEE---CCCCCEEEECCCCCCCCC
Q ss_conf 00011110--------1367773499999607805159889996----057--850121---145530110366534441
Q gi|254780233|r 219 FKMIGTIL--------EKDPFLGRIVTGRIHSGTIKSNQNIKAL----SPD--GALVEV---GRVSKILAFRGIDRQPID 281 (624)
Q Consensus 219 l~~~V~~i--------~~d~y~Gria~gRV~sGtlk~Gd~V~vl----~~~--g~~~~~---~kV~~L~~~~G~~r~~v~ 281 (624)
.+|.|... +.+.-.|-++-|.+..|.|+.||.+.+- ..+ |...-. .||..||. ++.+.+
T Consensus 251 prlIVIRSFDVNkPG~ev~~lkGgvaggsil~Gvlkvg~~IEiRPGiv~kd~~g~~~C~Pi~SrI~sL~A----E~n~L~ 326 (466)
T KOG0466 251 PRLIVIRSFDVNKPGSEVDDLKGGVAGGSILKGVLKVGQEIEIRPGIVTKDENGNIKCRPIFSRIVSLFA----EQNDLQ 326 (466)
T ss_pred CCEEEEEEECCCCCCCHHHCCCCCCCCCHHHHHHHHCCCEEEECCCEEEECCCCCEEEEEHHHHHHHHHH----HHCCCE
T ss_conf 7289998623689984122145742030554324204858886276155558996787567887788875----323502
Q ss_pred CCCCCCCCCCC
Q ss_conf 12545543222
Q gi|254780233|r 282 EAHAGDIVSIA 292 (624)
Q Consensus 282 ea~AGDIvaIa 292 (624)
.|.+|-.+.+.
T Consensus 327 ~AvPGGLIGVG 337 (466)
T KOG0466 327 FAVPGGLIGVG 337 (466)
T ss_pred EECCCCEEEEC
T ss_conf 42588556412
No 87
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=99.77 E-value=3.4e-19 Score=145.24 Aligned_cols=83 Identities=33% Similarity=0.568 Sum_probs=77.1
Q ss_pred HHCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00011110136777349999960780515988999605785012114553011036653444112545543222233210
Q gi|254780233|r 219 FKMIGTILEKDPFLGRIVTGRIHSGTIKSNQNIKALSPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSIAGLVKAT 298 (624)
Q Consensus 219 l~~~V~~i~~d~y~Gria~gRV~sGtlk~Gd~V~vl~~~g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIvaIaGl~~~~ 298 (624)
|.++|||+.+|||+|+++++||+||+|++||.|++++.+ +..||++|+.++|.++.+++++.||||++|+|++++.
T Consensus 1 ~~a~VFK~~~d~~~Gri~~~RV~~G~l~~g~~v~~~~~~----~~~kv~~l~~~~g~~~~~v~~~~aGdI~ai~gl~~~~ 76 (83)
T cd04088 1 FVALVFKTIHDPFVGKLSFVRVYSGTLKAGSTLYNSTKG----KKERVGRLLRMHGKKQEEVEEAGAGDIGAVAGLKDTA 76 (83)
T ss_pred CEEEEEEEEECCCCCEEEEEEEECCEECCCCEEEECCCC----EEEEECEEEEEECCCCEECCEECCCCEEEEECCCCCC
T ss_conf 909999766559888699999958998679758860651----0488220478856982394688899999995888870
Q ss_pred CCCEECC
Q ss_conf 1221105
Q gi|254780233|r 299 VADTFCD 305 (624)
Q Consensus 299 iGDTL~~ 305 (624)
+|||||+
T Consensus 77 ~GDTl~d 83 (83)
T cd04088 77 TGDTLCD 83 (83)
T ss_pred CCCCCCC
T ss_conf 5675369
No 88
>cd04096 eEF2_snRNP_like_C eEF2_snRNP_like_C: this family represents a C-terminal domain of eukaryotic elongation factor 2 (eEF-2) and a homologous domain of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.77 E-value=1.5e-18 Score=141.05 Aligned_cols=79 Identities=22% Similarity=0.327 Sum_probs=74.6
Q ss_pred CEEEEEEEECCHHHHHHHHHHHHHCCCEECCCCCCC-CCEEEEEEEECHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCC
Q ss_conf 416888873132331078998874354010421368-9849999996133565688998853276167888870530135
Q gi|254780233|r 413 EPIEEVVIDVDEEHSGAVVQKMTLHKSEMIELRPSG-TGRVRLVFLSPTRGLIGYQSQLMTDTRGTAIMNRLFHSYQPHK 491 (624)
Q Consensus 413 EPie~v~I~vp~ey~G~Vi~~l~~RrG~i~~m~~~~-~g~~~l~~~vP~r~l~g~~~~l~s~T~G~g~~~~~f~~Y~p~~ 491 (624)
|||+.++|.||++|+|+|+++|++|||+++++++.. .+...+.+.+|.++++||.++||++|+|+|++++.|+||+|++
T Consensus 1 EPi~~veI~~p~~~~g~V~~~L~~RRG~I~~~~~~~g~~~~~I~a~vP~~e~fg~~~~LRs~T~G~a~~~~~F~~y~~vP 80 (80)
T cd04096 1 EPIYLVEIQCPEDALGKVYSVLSKRRGHVLSEEPKEGTPLFEIKAYLPVIESFGFETDLRSATSGQAFPQLVFSHWEIVP 80 (80)
T ss_pred CCEEEEEEEECHHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEEEECHHHHHCHHHHHHHHCCCCCEEEEEECCCCCCC
T ss_conf 98599999988899889999884478588431000699769999990579971848999965779717998964232287
No 89
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=99.77 E-value=3.6e-19 Score=145.04 Aligned_cols=83 Identities=25% Similarity=0.318 Sum_probs=77.1
Q ss_pred HHCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00011110136777349999960780515988999605785012114553011036653444112545543222233210
Q gi|254780233|r 219 FKMIGTILEKDPFLGRIVTGRIHSGTIKSNQNIKALSPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSIAGLVKAT 298 (624)
Q Consensus 219 l~~~V~~i~~d~y~Gria~gRV~sGtlk~Gd~V~vl~~~g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIvaIaGl~~~~ 298 (624)
|.++|||+.+|||+|+++|+||+||+|++|+.|++.+.+ +.+|+++|+.++|.++.+++++.||||++++|++++.
T Consensus 1 l~AlVFK~~~D~~~G~ls~vRVysG~l~~g~~v~n~~~~----~~ekv~~l~~~~g~~~~~v~~~~AGdI~av~gl~~~~ 76 (83)
T cd04092 1 LCALAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTNTG----KKERISRLLQPFADQYQEIPSLSAGNIGVITGLKQTR 76 (83)
T ss_pred CEEEEEEEECCCCCCCEEEEEEEECEECCCCEEEECCCC----CEEEEEEEEEEECCCCEECCEECCCCEEEEECCCCCC
T ss_conf 949999865079844099999970789789999968899----6297308889757993299789699899997877860
Q ss_pred CCCEECC
Q ss_conf 1221105
Q gi|254780233|r 299 VADTFCD 305 (624)
Q Consensus 299 iGDTL~~ 305 (624)
+|||||+
T Consensus 77 tGDTltt 83 (83)
T cd04092 77 TGDTLVT 83 (83)
T ss_pred CCCEECC
T ss_conf 3889759
No 90
>cd01514 Elongation_Factor_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of elongation factors (EFs) bacterial EF-G, eukaryotic and archeal EF-2 and eukaryotic mitochondrial mtEFG1s and mtEFG2s. This group also includes proteins similar to the ribosomal protection proteins Tet(M) and Tet(O), BipA, LepA and, spliceosomal proteins: human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and yeast counterpart Snu114p. This domain adopts a ferredoxin-like fold consisting of an alpha-beta sandwich with anti-parallel beta-sheets, resembling the topology of domain III found in the elongation factors EF-G and eukaryotic EF-2, with which it forms the C-terminal block. The two domains however are not superimposable and domain III lacks some of the characteristics of this domain. EF-2/EF-G in complex with GTP, promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the
Probab=99.76 E-value=1.5e-18 Score=140.95 Aligned_cols=79 Identities=34% Similarity=0.563 Sum_probs=77.0
Q ss_pred CEEEEEEEECCHHHHHHHHHHHHHCCCEECCCCCCCCCEEEEEEEECHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCC
Q ss_conf 4168888731323310789988743540104213689849999996133565688998853276167888870530135
Q gi|254780233|r 413 EPIEEVVIDVDEEHSGAVVQKMTLHKSEMIELRPSGTGRVRLVFLSPTRGLIGYQSQLMTDTRGTAIMNRLFHSYQPHK 491 (624)
Q Consensus 413 EPie~v~I~vp~ey~G~Vi~~l~~RrG~i~~m~~~~~g~~~l~~~vP~r~l~g~~~~l~s~T~G~g~~~~~f~~Y~p~~ 491 (624)
|||++++|.+|++|+|.|+++|++|||++.++.+.+++++++.|.+|+++++||+++|++.|+|+|+|++.|++|+|++
T Consensus 1 EP~~~~~I~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~~i~~~iP~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~~~ 79 (79)
T cd01514 1 EPIMKVEITVPEEYLGAVIGDLSKRRGEILGMEPRGTGRVVIKAELPLAEMFGFATDLRSLTQGRASFSMEFSHYEPVP 79 (79)
T ss_pred CCEEEEEEEECHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECHHHHCCHHHHHHCCCCCEEEEEEEECCEEECC
T ss_conf 9989999998889999999998861777987786489859999997468862925274363799169999951305186
No 91
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=99.75 E-value=9.8e-19 Score=142.22 Aligned_cols=81 Identities=30% Similarity=0.477 Sum_probs=74.3
Q ss_pred HHCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00011110136777349999960780515988999605785012114553011036653444112545543222233210
Q gi|254780233|r 219 FKMIGTILEKDPFLGRIVTGRIHSGTIKSNQNIKALSPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSIAGLVKAT 298 (624)
Q Consensus 219 l~~~V~~i~~d~y~Gria~gRV~sGtlk~Gd~V~vl~~~g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIvaIaGl~~~~ 298 (624)
|.++|||+..||| |+++|.|||||+|++|+.|++.+. .+.+||++||.++|.+++++++|.||||++++|+ ++.
T Consensus 1 f~a~vFK~~~d~~-G~lsf~RVysG~l~~g~~v~n~~~----~~~eri~~l~~~~~~~~~~v~~a~aGDIvav~gl-~~~ 74 (81)
T cd04091 1 FVGLAFKLEEGRF-GQLTYMRIYQGKLKKGDTIYNVRT----GKKVRVPRLVRMHSNEMEEVEEAGAGDICAIFGI-DCA 74 (81)
T ss_pred CCEEEEEEECCCC-CCEEEEEEEEEEECCCCEEEECCC----CCEEEEEEEEEEECCCCEECCEECCCCEEEEECC-CCC
T ss_conf 9499998761899-889999996728879999997868----9168720228997898507656879989999899-967
Q ss_pred CCCEECC
Q ss_conf 1221105
Q gi|254780233|r 299 VADTFCD 305 (624)
Q Consensus 299 iGDTL~~ 305 (624)
+|||||+
T Consensus 75 tGDTL~d 81 (81)
T cd04091 75 SGDTFTD 81 (81)
T ss_pred CCCCCCC
T ss_conf 4776359
No 92
>PRK03003 engA GTP-binding protein EngA; Reviewed
Probab=99.74 E-value=2.4e-16 Score=126.57 Aligned_cols=158 Identities=22% Similarity=0.310 Sum_probs=117.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCC---
Q ss_conf 43149998546898778899999983961423220000038857798709606467999998997999972898754---
Q gi|254780233|r 18 QIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHAD--- 94 (624)
Q Consensus 18 ~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~D--- 94 (624)
.+=-|||||----|||||..+|+..-.++ |.+ .-|+|=-.....+.|++..|+++||||...
T Consensus 37 ~lPiVaIvGRPNVGKStLFNrL~~~~~AI-----V~d----------~pGvTRDr~~~~~~~~~~~f~lvDTgG~~~~~~ 101 (474)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAV-----VED----------IPGVTRDRVSYDAEWNGRRFVVQDTGGWEPDAK 101 (474)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCEEE-----ECC----------CCCCCCCCEEEEEEECCCEEEEEECCCCCCCHH
T ss_conf 99989998999988899999986886388-----059----------899880863689999992899997999999747
Q ss_pred -CH----HHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCH
Q ss_conf -07----9999998742178999976878864789999999972997899997543667402568999998886226730
Q gi|254780233|r 95 -FG----GEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATD 169 (624)
Q Consensus 95 -F~----gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~d 169 (624)
|. ..++.++.-+|.+|+||||.+|+.+.-..+.+.....+.|.|+++||+|.+.. +.... + |..||..+
T Consensus 102 ~~~~~i~~q~~~ai~eaD~IlfVvD~~~glt~~D~eia~~LRk~~kpviLVvNK~D~~~~--~~~~~---e-fy~LGf~~ 175 (474)
T PRK03003 102 GLQALVAEQAEVAMRTADAVLFVVDATVGATATDEAVARLLRRSGKPVFLAANKVDSERG--EADAA---A-LWSLGLGE 175 (474)
T ss_pred HHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCH--HHHHH---H-HHHHCCCC
T ss_conf 899999999999998699999999689898878999999987539977998675566210--23489---9-99757998
Q ss_pred HHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCCCC
Q ss_conf 11042668878865916467422334864135553210245422
Q gi|254780233|r 170 AQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPPV 213 (624)
Q Consensus 170 e~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~P~ 213 (624)
+++.||.+| .|+..|+|.|.+.+|...
T Consensus 176 ------~i~ISA~Hg-----------~Gi~dLld~i~~~l~~~~ 202 (474)
T PRK03003 176 ------PHPVSALHG-----------RGVADLLDAVLAALPEVP 202 (474)
T ss_pred ------EEEEEHHCC-----------CCHHHHHHHHHHHCCCCC
T ss_conf ------699602037-----------897999999997487766
No 93
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=99.72 E-value=4.3e-18 Score=138.02 Aligned_cols=85 Identities=25% Similarity=0.325 Sum_probs=77.8
Q ss_pred CCHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 20000011110136777349999960780515988999605785012114553011036653444112545543222233
Q gi|254780233|r 216 EGEFKMIGTILEKDPFLGRIVTGRIHSGTIKSNQNIKALSPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSIAGLV 295 (624)
Q Consensus 216 e~pl~~~V~~i~~d~y~Gria~gRV~sGtlk~Gd~V~vl~~~g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIvaIaGl~ 295 (624)
|+||+++|||+.+|+|.|+++|.||+||+|+.++.|.+. ++ ..+||++|+.++|.++.+++++.||||++++|+.
T Consensus 1 e~~l~a~VFKi~~d~~~grl~yvRv~sG~l~~~~~v~~~-~~----~~eki~~l~~~~~~~~~~v~~~~AGdI~av~gl~ 75 (85)
T cd03690 1 ESELSGTVFKIERDDKGERLAYLRLYSGTLRLRDSVRVN-RE----EKIKITELRVFNNGEVVTADTVTAGDIAILTGLK 75 (85)
T ss_pred CCCCEEEEEEEEECCCCCEEEEEEEEEEEECCCCEEECC-CC----CEEEECEEEEEECCCEEECCEECCCCEEEEECCC
T ss_conf 997349999888779998599999834098289889658-99----6040234899908995697789899999998999
Q ss_pred CCCCCCEECC
Q ss_conf 2101221105
Q gi|254780233|r 296 KATVADTFCD 305 (624)
Q Consensus 296 ~~~iGDTL~~ 305 (624)
++.+||||.+
T Consensus 76 ~~~~GDtlgd 85 (85)
T cd03690 76 GLRVGDVLGD 85 (85)
T ss_pred CCCCCCCCCC
T ss_conf 8837772278
No 94
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.72 E-value=1.7e-16 Score=127.45 Aligned_cols=149 Identities=25% Similarity=0.310 Sum_probs=108.6
Q ss_pred EEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHH---
Q ss_conf 99854689877889999998396142322000003885779870960646799999899799997289875407999---
Q gi|254780233|r 23 AIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEV--- 99 (624)
Q Consensus 23 aIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEV--- 99 (624)
||+|...+|||||..+|+ |.- ...|.+ .-|.|.......+.|+++++.|+||||+.+.....
T Consensus 1 aivG~pN~GKSsL~N~l~---~~~--~~ivs~----------~~gtTr~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~ 65 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLT---GRR--DAIVED----------TPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKE 65 (157)
T ss_pred CCCCCCCCCHHHHHHHHH---CCC--CEEEEC----------CCCCEEEEEEEEEEECCEEEEEEECCCCCCCCCHHHHH
T ss_conf 904899988999999995---887--535407----------99935667899999999889998578755566067899
Q ss_pred -----HHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCH
Q ss_conf -----999874217899997687886478999999997299789999754366740256899999888622673011042
Q gi|254780233|r 100 -----ERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDF 174 (624)
Q Consensus 100 -----er~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~ 174 (624)
..++.-+|.+++|+||.+|+..+...++....+.+.|.++++||+|.... ++...+. ..++..
T Consensus 66 ~~~~~~~~i~~ad~il~viDa~~~~~~~d~~i~~~l~~~~kp~i~v~NK~D~~~~--~~~~~~~----~~l~~~------ 133 (157)
T cd01894 66 IREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKE--EDEAAEF----YSLGFG------ 133 (157)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC--HHHHHHH----HHCCCC------
T ss_conf 9999999998659079999899999989999999999847980999978716586--4569999----965999------
Q ss_pred HHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 66887886591646742233486413555321024
Q gi|254780233|r 175 PILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 175 Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
++++.||++| .|++.|+|.|++.+
T Consensus 134 ~~i~iSA~~g-----------~Gid~L~~~I~~~L 157 (157)
T cd01894 134 EPIPISAEHG-----------RGIGDLLDAILELL 157 (157)
T ss_pred CEEEEEEECC-----------CCHHHHHHHHHHHC
T ss_conf 7599996589-----------49999999999659
No 95
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.72 E-value=1.4e-16 Score=128.13 Aligned_cols=154 Identities=21% Similarity=0.274 Sum_probs=107.2
Q ss_pred EECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECC-EEEEEECCCCCCCCH------
Q ss_conf 9854689877889999998396142322000003885779870960646799999899-799997289875407------
Q gi|254780233|r 24 IIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWND-VRINIVDTPGHADFG------ 96 (624)
Q Consensus 24 IiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~-~~iNiiDTPGH~DF~------ 96 (624)
|||+..+|||||+.+|+ |.- ...+. ...|.|.......+.+.+ ..|.|+||||+.+..
T Consensus 1 ivG~~N~GKStL~N~L~---~~~--~~~vs----------~~~gtT~~~~~~~~~~~~~~~i~lvDtpG~~~~~~~~~~~ 65 (163)
T cd00880 1 LFGRTNAGKSSLLNALL---GQE--VAIVS----------PVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGRER 65 (163)
T ss_pred CCCCCCCCHHHHHHHHH---CCC--CCEEC----------CCCCEECCCEEEEEEECCCCEEEEEECCCCCCCCCHHHHH
T ss_conf 91979989999999995---899--61016----------9899865645899995478659997279852223101689
Q ss_pred -HHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHH-HHHHHHHHHCCCCHHHCCH
Q ss_conf -99999987421789999768788647899999999729978999975436674025689-9999888622673011042
Q gi|254780233|r 97 -GEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDARADEVI-NEVFDLFSALDATDAQLDF 174 (624)
Q Consensus 97 -gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~-~ei~dlf~~l~a~de~ld~ 174 (624)
-.+.+.+.-+|.+++||||.++...+...++......+.|.|+++||+|+......+.. ........ .....
T Consensus 66 ~~~~~~~~~~~D~il~viD~~~~~~~~~~~~l~~l~~~~~p~i~v~NK~D~~~~~~~~~~~~~~~~~~~------~~~~~ 139 (163)
T cd00880 66 EELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEELLELRLLILL------LLLGL 139 (163)
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECEECCCHHHHHHHHHHHHHHHH------HCCCC
T ss_conf 999999998689899998789997556699999999719742788534206787899999999999987------67998
Q ss_pred HHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 66887886591646742233486413555321024
Q gi|254780233|r 175 PILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 175 Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
|+++.||++| .|+..|++.|++.+
T Consensus 140 ~i~~iSA~~g-----------~gi~~L~~~i~e~L 163 (163)
T cd00880 140 PVIAVSALTG-----------EGIDELREALIEAL 163 (163)
T ss_pred EEEEEECCCC-----------CCHHHHHHHHHHHC
T ss_conf 5999978989-----------79999999999519
No 96
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.72 E-value=3e-16 Score=125.86 Aligned_cols=157 Identities=25% Similarity=0.226 Sum_probs=107.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCC----
Q ss_conf 1499985468987788999999839614232200000388577987096064679999989979999728987540----
Q gi|254780233|r 20 RNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADF---- 95 (624)
Q Consensus 20 RNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF---- 95 (624)
-+|||+|+..+|||||..+|+ |. +...+. + .-|.|-......+.|+++++.|+||||...-
T Consensus 4 ~~V~ivG~pN~GKSsL~N~L~---~~--~~a~vs----~------~~gtTr~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 68 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALV---GQ--KISIVS----P------KPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKL 68 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHH---CC--CEEEEC----C------CCCEEECCCEEEEEECCEEEEEEECCCCCCCHHHH
T ss_conf 689999999999999999995---89--703323----8------89826344236898499789999589866514567
Q ss_pred ----HHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHH
Q ss_conf ----7999999874217899997687886478999999997299789999754366740256899999888622673011
Q gi|254780233|r 96 ----GGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQ 171 (624)
Q Consensus 96 ----~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ 171 (624)
.-...+++.-+|.+++|+||.+|...+...+++...+.+.|.++++||+|..+.. + ...+....+.....
T Consensus 69 ~~~~~~~~~~~l~~~D~il~vvD~~~~~~~~d~~i~~~l~~~~~~~iivlNK~Dl~~~~-~-~~~~~~~~~~~~~~---- 142 (168)
T cd04163 69 GERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDK-E-DLLPLLEKLKELGP---- 142 (168)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECEEECCCH-H-HHHHHHHHHHHHCC----
T ss_conf 78999999986513655899997898986677999999998099859999788704787-7-89999999996189----
Q ss_pred CCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 04266887886591646742233486413555321024
Q gi|254780233|r 172 LDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 172 ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
.-|+++.||++| .|++.|++.|++++
T Consensus 143 -~~~vi~iSA~~g-----------~Gid~L~~~i~~~L 168 (168)
T cd04163 143 -FAEIFPISALKG-----------ENVDELLEEIVKYL 168 (168)
T ss_pred -CCCEEEEECCCC-----------CCHHHHHHHHHHHC
T ss_conf -996899977789-----------69999999999539
No 97
>PRK00089 era GTP-binding protein Era; Reviewed
Probab=99.72 E-value=4.8e-16 Score=124.52 Aligned_cols=163 Identities=28% Similarity=0.315 Sum_probs=114.6
Q ss_pred CCCCCC--EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCC
Q ss_conf 802431--499985468987788999999839614232200000388577987096064679999989979999728987
Q gi|254780233|r 15 GYMQIR--NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGH 92 (624)
Q Consensus 15 ~~~~IR--NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH 92 (624)
.+++-| .|||||---+|||||+.+|+-+-=++ |.+ .-|-|-.+-..-+.|++.++.|+||||-
T Consensus 2 ~~~~~ksG~VaivG~PNvGKSTL~N~l~~~k~si-----VS~----------k~~TTR~~i~gi~~~~~~q~i~iDTpGi 66 (296)
T PRK00089 2 SPEKFKSGFVAIVGRPNVGKSTLLNALVGQKISI-----VSP----------KPQTTRHRIRGIVTEDDAQIIFVDTPGI 66 (296)
T ss_pred CCCCCCEEEEEEECCCCCCHHHHHHHHHCCCEEE-----ECC----------CCCCCCCCEEEEEEECCEEEEEEECCCC
T ss_conf 9889837999999899988899999996896176-----149----------5998728389999979979999989986
Q ss_pred CC--------CHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 54--------0799999987421789999768788647899999999729978999975436674025689999988862
Q gi|254780233|r 93 AD--------FGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLFSA 164 (624)
Q Consensus 93 ~D--------F~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~ 164 (624)
.+ +...+.+++.-+|-+++|+||.+|+..|.+.++....+.+.|.|+++||+|+- +.++++..+.++-..
T Consensus 67 ~~~~~~l~~~~~~~~~~ai~~aDlil~viD~~~~~~~~d~~i~~~l~~~~kp~ilviNKiDlv--~k~~l~~~~~~l~~~ 144 (296)
T PRK00089 67 HKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLV--DKEELLPLLEELSEL 144 (296)
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEHHHHC--CHHHHHHHHHHHHHH
T ss_conf 674677878999999999975999999985788989889999998887499889995478842--898899999999853
Q ss_pred CCCCHHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf 26730110426688788659164674223348641355532102454
Q gi|254780233|r 165 LDATDAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPP 211 (624)
Q Consensus 165 l~a~de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~ 211 (624)
.+.. .+++.||++| .|++.|++.|.+++|.
T Consensus 145 ~~f~------~if~iSA~~~-----------~gi~~L~~~l~~~lp~ 174 (296)
T PRK00089 145 MDFA------EIVPISALKG-----------DNVDELLDLIAKYLPE 174 (296)
T ss_pred CCCC------EEEEEECCCC-----------CCHHHHHHHHHHHCCC
T ss_conf 7976------5999967788-----------8989999999986798
No 98
>PRK09518 bifunctional cytidylate kinase/GTP-binding protein; Reviewed
Probab=99.71 E-value=1.7e-15 Score=120.91 Aligned_cols=160 Identities=23% Similarity=0.373 Sum_probs=118.3
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCC-
Q ss_conf 8024314999854689877889999998396142322000003885779870960646799999899799997289875-
Q gi|254780233|r 15 GYMQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHA- 93 (624)
Q Consensus 15 ~~~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~- 93 (624)
.++.+=-|||||----|||||..+|+..-.++ |++. -|+|=--....++|+++.|.+|||.|..
T Consensus 275 ~~~~~p~VAIVGRPNVGKSTLFNRL~g~r~AI-----V~d~----------pGvTRDR~~~~~~~~~~~F~lvDTGG~~~ 339 (714)
T PRK09518 275 GPEPVGTVAIVGRPNVGKSTLVNRILGRREAV-----VEDT----------PGVTRDRVSYDAEWAGRDFKLVDTGGWEA 339 (714)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHCCCEEE-----ECCC----------CCCCCCCCEEEEEECCEEEEEEECCCCCC
T ss_conf 77888879998999876899998862884168-----4698----------99883755579999991699997999998
Q ss_pred ---CCHHH----HHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf ---40799----99998742178999976878864789999999972997899997543667402568999998886226
Q gi|254780233|r 94 ---DFGGE----VERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLFSALD 166 (624)
Q Consensus 94 ---DF~gE----Ver~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~ 166 (624)
+|..+ ++.++.-+|.+|+|||+..|+.+.-..+.+.....+.|.|+++||+|.+.... ...+ |..||
T Consensus 340 ~~~~~~~~I~~Q~~~Ai~eADlIlFVVD~~~Glt~~D~~ia~~LRk~~KpvilvvNK~D~~~~e~-----~~~e-f~~LG 413 (714)
T PRK09518 340 DAEGIEAAIASQAEIAMTLADAIVFVVDGQVGMTSTDEVIARMLQRAGKPVVLVANKIDDQASEY-----DVAE-FWKLG 413 (714)
T ss_pred CCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHH-----HHHH-HHHCC
T ss_conf 83269999999999999968999999968979897899999999856998899998978876401-----2999-99659
Q ss_pred CCHHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCCC
Q ss_conf 7301104266887886591646742233486413555321024542
Q gi|254780233|r 167 ATDAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPP 212 (624)
Q Consensus 167 a~de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~P 212 (624)
..+ +++.||.+| .|+..|||.|++.+|..
T Consensus 414 ~~e------~~~ISA~Hg-----------~G~~dLld~i~~~l~~~ 442 (714)
T PRK09518 414 LGE------PYSISAMHG-----------RGVADLLDVVLDSLKQH 442 (714)
T ss_pred CCC------CEEEECCCC-----------CCHHHHHHHHHHHCCCC
T ss_conf 999------689847357-----------89899999999658888
No 99
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.71 E-value=2e-15 Score=120.52 Aligned_cols=343 Identities=20% Similarity=0.212 Sum_probs=186.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCH---
Q ss_conf 14999854689877889999998396142322000003885779870960646799999899799997289875407---
Q gi|254780233|r 20 RNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFG--- 96 (624)
Q Consensus 20 RNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~--- 96 (624)
.-|||+|--.-|||||..+|..+--++ |+ |.- |.|=--.....+|.++.|.+|||+|-.+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AI-----V~----D~p------GvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~ 68 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAI-----VS----DTP------GVTRDRIYGDAEWLGREFILIDTGGLDDGDEDE 68 (444)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCEEEE-----EE----CCC------CCCCCCCCCEEEECCCEEEEEECCCCCCCCCHH
T ss_conf 789998999875899998875770267-----60----699------975577545069838607999789977688128
Q ss_pred --HH----HHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHH
Q ss_conf --99----999987421789999768788647899999999729978999975436674025689999988862267301
Q gi|254780233|r 97 --GE----VERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDA 170 (624)
Q Consensus 97 --gE----Ver~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de 170 (624)
.+ ++.++..+|.+|+|||+.+|+.++-+.+.+.....+.|.|+++||+|...+ ++.. .+ |..||..+
T Consensus 69 l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~--e~~~---~e-fyslG~g~- 141 (444)
T COG1160 69 LQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKA--EELA---YE-FYSLGFGE- 141 (444)
T ss_pred HHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHH--HHHH---HH-HHHCCCCC-
T ss_conf 99999999999997679999998488789978999999998539988999976667304--5648---99-98647898-
Q ss_pred HCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCCCEEE-EEEECCCCC----
Q ss_conf 104266887886591646742233486413555321024542233200000111101367773499-999607805----
Q gi|254780233|r 171 QLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPPVISEGEFKMIGTILEKDPFLGRIV-TGRIHSGTI---- 245 (624)
Q Consensus 171 ~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~P~~~e~pl~~~V~~i~~d~y~Gria-~gRV~sGtl---- 245 (624)
+++.||-+| .|+..|+|+|++.+| |.....+... .-..+++ +||-..|.=
T Consensus 142 -----~~~ISA~Hg-----------~Gi~dLld~v~~~l~-~~e~~~~~~~--------~~~ikiaiiGrPNvGKSsLiN 196 (444)
T COG1160 142 -----PVPISAEHG-----------RGIGDLLDAVLELLP-PDEEEEEEEE--------TDPIKIAIIGRPNVGKSSLIN 196 (444)
T ss_pred -----CEEEEHHHC-----------CCHHHHHHHHHHHCC-CCCCCCCCCC--------CCCEEEEEEECCCCCCHHHHH
T ss_conf -----268425535-----------698999999997567-7433444356--------775089999278787058887
Q ss_pred --CCCCEEEEECCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCC-CCCCCCCCCEECCCCCCCCCCCCCCCCCCE
Q ss_conf --15988999605785012114553011036653444112545543222-233210122110556521123366665421
Q gi|254780233|r 246 --KSNQNIKALSPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSIA-GLVKATVADTFCDPSIDEPLKAQPIDPPTV 322 (624)
Q Consensus 246 --k~Gd~V~vl~~~g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIvaIa-Gl~~~~iGDTL~~~~~p~~Lp~i~i~~Pti 322 (624)
-..+.+.+-...|+.. .-|..-+.+.|.+..-+|.|+-=--.-|. +++...+..| ++.+...+ ++
T Consensus 197 ~ilgeeR~Iv~~~aGTTR--D~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt---------~~aI~~a~-vv 264 (444)
T COG1160 197 AILGEERVIVSDIAGTTR--DSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVART---------LKAIERAD-VV 264 (444)
T ss_pred HHCCCCEEEECCCCCCCC--CCEEEEEEECCEEEEEEECCCCCCCCCCCCCEEEEEEHHH---------HHHHHHCC-EE
T ss_conf 750682598459998622--0331258998818999987787746641242688750546---------76786568-89
Q ss_pred EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEECCHHHHHHHHHHHHHCCEEEECCCCEE
Q ss_conf 57861268655444432101788999999973028379999859997599996364568888741233480330157448
Q gi|254780233|r 323 TMTFGVNDSPLAGTEGDKVTSRMIRDRLFKEAEGNIALKIEESSSKDAFFVSGRGELQLAVLIETMRREGFELAVSRPRV 402 (624)
Q Consensus 323 s~~f~vn~sP~ag~eg~~~ts~~l~~rL~ke~~~dvsL~ve~~~~~~~~~v~GrGeLHL~IliE~mRREG~E~~vs~P~V 402 (624)
.+.+.+ +.|+..++ .+|.....+. ..+.+-+- +. |-.--..+..++...+.++|. +-|.=-.|.+
T Consensus 265 llviDa-~~~~~~qD------~~ia~~i~~~--g~~~vIvv-NK----WDl~~~~~~~~~~~k~~i~~~-l~~l~~a~i~ 329 (444)
T COG1160 265 LLVIDA-TEGISEQD------LRIAGLIEEA--GRGIVIVV-NK----WDLVEEDEATMEEFKKKLRRK-LPFLDFAPIV 329 (444)
T ss_pred EEEEEC-CCCCHHHH------HHHHHHHHHC--CCCEEEEE-EC----CCCCCCHHHHHHHHHHHHHHH-HCCCCCCEEE
T ss_conf 999988-87836889------9999999975--89749999-75----325785166799999999987-2213677279
Q ss_pred EEEEECCEE--------CCEEEEEEEECCHHHHHHHHHHHHH
Q ss_conf 998208826--------0416888873132331078998874
Q gi|254780233|r 403 VIKKEGDSL--------LEPIEEVVIDVDEEHSGAVVQKMTL 436 (624)
Q Consensus 403 ~~k~~dg~~--------lEPie~v~I~vp~ey~G~Vi~~l~~ 436 (624)
-.....|.- .+-++..+--++.--+..+++....
T Consensus 330 ~iSA~~~~~i~~l~~~i~~~~~~~~~ri~Ts~LN~~l~~a~~ 371 (444)
T COG1160 330 FISALTGQGLDKLFEAIKEIYECATRRISTSLLNRVLEDAVA 371 (444)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 997047877278899999999986545476899999999997
No 100
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.71 E-value=4.4e-16 Score=124.82 Aligned_cols=156 Identities=25% Similarity=0.382 Sum_probs=117.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCC----CH-
Q ss_conf 9998546898778899999983961423220000038857798709606467999998997999972898754----07-
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHAD----FG- 96 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~D----F~- 96 (624)
|||+|---.|||||..+|+.+-.++ |.+ .-|.|--.....+.|+++.++++||||-.+ |.
T Consensus 2 VaIvGrpNVGKStLfN~L~~~~~aI-----v~~----------~~G~TRD~~~~~~~~~~~~~~liDT~G~~~~~~~~~~ 66 (429)
T TIGR03594 2 VAIVGRPNVGKSTLFNRLTGKRDAI-----VAD----------TPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDK 66 (429)
T ss_pred EEEECCCCCCHHHHHHHHHCCCEEE-----CCC----------CCCCCCCCEEEEEEECCEEEEEEECCCCCCCCHHHHH
T ss_conf 8999999987899999987886176-----159----------8998877337999999907999989898987437899
Q ss_pred ---HHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCC
Q ss_conf ---99999987421789999768788647899999999729978999975436674025689999988862267301104
Q gi|254780233|r 97 ---GEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLD 173 (624)
Q Consensus 97 ---gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld 173 (624)
..+..++.-+|.+++||||.+|+.++-..+++.....+.|.|+++||+|... .+.... | |..||-.+
T Consensus 67 ~~~~q~~~ai~~aDlIlfVvD~~~git~~D~~i~~~Lrk~~k~vilviNK~D~~~--~~~~~~---e-f~~LG~~~---- 136 (429)
T TIGR03594 67 QIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKK--EDAVAA---E-FYSLGFGE---- 136 (429)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC--HHHHHH---H-HHHHCCCC----
T ss_conf 9999999999867999999857768986799999999871997899998346753--145699---9-99836898----
Q ss_pred HHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCCCCCC
Q ss_conf 266887886591646742233486413555321024542233
Q gi|254780233|r 174 FPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPPVIS 215 (624)
Q Consensus 174 ~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~P~~~ 215 (624)
+++.||.+| .|+..|+|.|.+.+|....+
T Consensus 137 --~i~iSA~h~-----------~Gi~~L~~~i~~~l~~~~~~ 165 (429)
T TIGR03594 137 --PIPISAEHG-----------RGIGDLLDAILELLPEEEEE 165 (429)
T ss_pred --EEEEEECCC-----------CCHHHHHHHHHHHCCCCCCC
T ss_conf --688742046-----------79999999999658866555
No 101
>cd04098 eEF2_C_snRNP eEF2_C_snRNP: This family includes a C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to the C-terminal domain of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.70 E-value=3.2e-17 Score=132.23 Aligned_cols=79 Identities=25% Similarity=0.365 Sum_probs=73.8
Q ss_pred CEEEEEEEECCHHHHHHHHHHHHHCCCEECCCCCC-CCCEEEEEEEECHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCC
Q ss_conf 41688887313233107899887435401042136-89849999996133565688998853276167888870530135
Q gi|254780233|r 413 EPIEEVVIDVDEEHSGAVVQKMTLHKSEMIELRPS-GTGRVRLVFLSPTRGLIGYQSQLMTDTRGTAIMNRLFHSYQPHK 491 (624)
Q Consensus 413 EPie~v~I~vp~ey~G~Vi~~l~~RrG~i~~m~~~-~~g~~~l~~~vP~r~l~g~~~~l~s~T~G~g~~~~~f~~Y~p~~ 491 (624)
|||++++|.||++|+|.|++.|++|||+++++++. +.+...+.+.+|.++++||.++||+.|+|+|++++.|+||+|+|
T Consensus 1 EPi~~veI~~p~~~~g~V~~~l~~RRG~ii~~~~~~gt~~~~I~A~vPv~esFG~~tdLRs~T~G~a~~~~~Fsh~~~vP 80 (80)
T cd04098 1 EPIYEVEITCPADAVSAVYEVLSRRRGHVIYDTPIPGTPLYEVKAFIPVIESFGFETDLRVHTQGQAFCQSVFDHWQIVP 80 (80)
T ss_pred CCCEEEEEEECHHHHHHHHHHHHCCCCEEECCCCCCCCCEEEEEEECCHHHHCCCHHHHHHHCCCCCEEEEEECCCEECC
T ss_conf 99489999977798536887630489814134204998679999987578975847999965779726997963231276
No 102
>PRK09518 bifunctional cytidylate kinase/GTP-binding protein; Reviewed
Probab=99.70 E-value=4.8e-16 Score=124.53 Aligned_cols=158 Identities=20% Similarity=0.190 Sum_probs=112.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCC----
Q ss_conf 2431499985468987788999999839614232200000388577987096064679999989979999728987----
Q gi|254780233|r 17 MQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGH---- 92 (624)
Q Consensus 17 ~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH---- 92 (624)
...++|||||---.|||||+.+||-+--.+ |.+ .-|.|.-|-.+.+.|++.++.||||.|-
T Consensus 450 ~~~~rIAIIGRPNVGKSTLiN~LlgeeR~I-----Vs~----------iaGTTRDsId~~~~~~g~~~~lIDTAGiRkk~ 514 (714)
T PRK09518 450 SGLRRVALVGRPNVGKSSLLNQLTREERAV-----VND----------LAGTTRDPVDEIVNIDGKDWLFVDTAGIRRKQ 514 (714)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCEEE-----ECC----------CCCCEECEEEEEEEECCEEEEEEECHHCCCCC
T ss_conf 677358886699887899999996897588-----568----------89850230556799999789999860015244
Q ss_pred -CC----CH--HHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCC-CHHHHHHHHHHHHHH
Q ss_conf -54----07--99999987421789999768788647899999999729978999975436674-025689999988862
Q gi|254780233|r 93 -AD----FG--GEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDA-RADEVINEVFDLFSA 164 (624)
Q Consensus 93 -~D----F~--gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a-~~~~v~~ei~dlf~~ 164 (624)
.+ |. -...+++.-+|.||||+||.+|+.-|-..+...+.+.|.+.|+++||.|.-+. +-+....++...|..
T Consensus 515 k~~~~iE~~S~~rt~~aI~~adVvllviDA~~git~QD~~Ia~~i~~~gk~~IivvNKWDLv~~~~~~~~~~~i~~~l~~ 594 (714)
T PRK09518 515 KKLTGAEYYASLRTQAAIERCELALILFDASQPISEQDLRVMSMAVDAGRALVLAFNKWDLMDEFRRQRLEREIDTEFDR 594 (714)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECHHCCCHHHHHHHHHHHHHHCCC
T ss_conf 32543227999999998865889999986776752899999999998599379999614306866899999999975636
Q ss_pred CCCCHHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHH
Q ss_conf 267301104266887886591646742233486413555321
Q gi|254780233|r 165 LDATDAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIV 206 (624)
Q Consensus 165 l~a~de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii 206 (624)
+ -..|++|.||++|+ ++..||+++.
T Consensus 595 ~------~~apiv~iSA~~g~-----------~v~kl~~~i~ 619 (714)
T PRK09518 595 V------MWAERVNISAKTGR-----------HTNRLARAMD 619 (714)
T ss_pred C------CCCCEEEEECCCCC-----------CHHHHHHHHH
T ss_conf 8------99988999667897-----------8899999999
No 103
>PRK03003 engA GTP-binding protein EngA; Reviewed
Probab=99.70 E-value=6.8e-16 Score=123.54 Aligned_cols=156 Identities=21% Similarity=0.228 Sum_probs=113.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCC-----
Q ss_conf 314999854689877889999998396142322000003885779870960646799999899799997289875-----
Q gi|254780233|r 19 IRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHA----- 93 (624)
Q Consensus 19 IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~----- 93 (624)
.-+|||||.-..|||||+.+||-.-..+... .-|.|.-|-...+.|++..+.||||+|-.
T Consensus 211 ~~rIAIvGrPNvGKStL~N~llg~~r~ivs~---------------~~GTTRDsI~~~~~~~~~~~~liDTAGiRrk~kv 275 (474)
T PRK03003 211 PRRVALVGKPNVGKSSLLNKLAGEERSVVHD---------------VAGTTVDPVDSLIELGGKVWRFVDTAGLRRKVGQ 275 (474)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEEECC---------------CCCCCCCCEEEEEEECCEEEEEEECCCCCCCCCC
T ss_conf 6279998089987889999985897567458---------------9985154405899999989999989876635533
Q ss_pred ----CCH--HHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHH-HHHHHHHHHHHHCC
Q ss_conf ----407--99999987421789999768788647899999999729978999975436674025-68999998886226
Q gi|254780233|r 94 ----DFG--GEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDARAD-EVINEVFDLFSALD 166 (624)
Q Consensus 94 ----DF~--gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~-~v~~ei~dlf~~l~ 166 (624)
+|. -...+++.-+|-|+||+||.+|+-.|-..+...+.+.|.+.|+++||.|.-+.+.. ....++...+..+
T Consensus 276 ~~~iE~~s~~rtl~aI~~advvilviDa~egit~QD~~Ia~~v~~~gk~~IivvNKwDLv~~~~~~~~~~~i~~~l~~~- 354 (474)
T PRK03003 276 ASGHEFYASLRTHAAIDAAEVAVVLIDASEPLTEQDQRVLSMVIEAGRALVLAFNKWDLVDEDRRYYLEREIDRELAQV- 354 (474)
T ss_pred CCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECHHCCCHHHHHHHHHHHHHHHHHC-
T ss_conf 4314589999999998733557999854658749999999999980995799997144168678999999998645544-
Q ss_pred CCHHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHH
Q ss_conf 7301104266887886591646742233486413555321
Q gi|254780233|r 167 ATDAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIV 206 (624)
Q Consensus 167 a~de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii 206 (624)
-..|++|.||++| .++..||+.+.
T Consensus 355 -----~~~piv~ISA~~g-----------~~i~kL~~~i~ 378 (474)
T PRK03003 355 -----RWAPRVNISAKTG-----------RAVQKLVPALE 378 (474)
T ss_pred -----CCCCEEEEEEECC-----------CCHHHHHHHHH
T ss_conf -----8985699981048-----------79899999999
No 104
>PRK00093 engA GTP-binding protein EngA; Reviewed
Probab=99.69 E-value=9e-16 Score=122.76 Aligned_cols=157 Identities=24% Similarity=0.324 Sum_probs=117.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCC-----C
Q ss_conf 49998546898778899999983961423220000038857798709606467999998997999972898754-----0
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHAD-----F 95 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~D-----F 95 (624)
-|||+|---.|||||..+|+..--++ |. |. -|.|--.....+.|++++|+++||||... |
T Consensus 3 ~VaIvGrpNvGKStLfN~l~~~~~aI-----v~----~~------~G~TRD~~~~~~~~~~~~~~lvDT~G~~~~~~~~~ 67 (438)
T PRK00093 3 VVAIVGRPNVGKSTLFNRLTGKRDAI-----VA----DT------PGVTRDRIYGEAEWLGREFIVIDTGGIDPGDEDGF 67 (438)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCEEE-----EC----CC------CCCCCCCEEEEEEECCEEEEEEECCCCCCCCCHHH
T ss_conf 89998999987899999986886187-----15----98------99984715899999992899998979898882079
Q ss_pred HHH----HHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 799----9999874217899997687886478999999997299789999754366740256899999888622673011
Q gi|254780233|r 96 GGE----VERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQ 171 (624)
Q Consensus 96 ~gE----Ver~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ 171 (624)
... +..++.-+|.+|+||||.+|+.++-..+.+.....+.|.|+++||+|.... .+...| |..||..+
T Consensus 68 ~~~i~~q~~~ai~~aDlIlfVvD~~~git~~D~~i~~~Lrk~~k~vilviNK~D~~~~-----~~~~~e-f~~LGf~~-- 139 (438)
T PRK00093 68 EKQMREQALLAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGKKM-----EADAYE-FYSLGLGE-- 139 (438)
T ss_pred HHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCH-----HHHHHH-HHHHCCCC--
T ss_conf 9999999999998589999998377689878999999999739978999975566320-----345999-99836898--
Q ss_pred CCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCCCCCC
Q ss_conf 04266887886591646742233486413555321024542233
Q gi|254780233|r 172 LDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPPVIS 215 (624)
Q Consensus 172 ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~P~~~ 215 (624)
+++.||.+| .|+..|+|.|.+++|....+
T Consensus 140 ----~i~iSA~h~-----------~Gi~~L~~~i~~~l~~~~~~ 168 (438)
T PRK00093 140 ----PYPISAEHG-----------RGIGDLLDAILELLPEEEEE 168 (438)
T ss_pred ----EEEEEECCC-----------CCHHHHHHHHHHHCCCCCCC
T ss_conf ----188853056-----------69899999998548855434
No 105
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.69 E-value=4.1e-16 Score=125.03 Aligned_cols=155 Identities=26% Similarity=0.383 Sum_probs=101.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCC---CC----
Q ss_conf 99985468987788999999839614232200000388577987096064679999989979999728987---54----
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGH---AD---- 94 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH---~D---- 94 (624)
|||+|+..+|||||..+|+.+... ..+. + .-|.|-.. -.+.| +.++.|+||||. .-
T Consensus 2 IaivG~pN~GKSTL~N~L~~~~~~----~~vs----~------~~gtTr~i--~~~~~-~~~~~~vDtPG~g~~~~~~~~ 64 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKL----ARTS----K------TPGKTQLI--NFFNV-NDKFRLVDLPGYGYAKVSKEV 64 (170)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCE----EEEE----C------CCCEEEEE--EEEEE-CCEEEEEECCCCHHCCCCHHH
T ss_conf 899989999999999999689962----7860----7------89778520--58853-877999965784010168779
Q ss_pred ---CHHHHHHHHH---HHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC-CCHHHHHHHHHHHHHHCCC
Q ss_conf ---0799999987---42178999976878864789999999972997899997543667-4025689999988862267
Q gi|254780233|r 95 ---FGGEVERILC---MVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSD-ARADEVINEVFDLFSALDA 167 (624)
Q Consensus 95 ---F~gEVer~l~---~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~-a~~~~v~~ei~dlf~~l~a 167 (624)
|....++.++ -+|.+++|+||..|+..|.+.++....+.+.|.|+++||+|+-. .+..+...++.. .+..
T Consensus 65 ~~~~~~~~~~~l~~~~~~~~vi~viD~~~~~~~~d~~i~~~l~~~~kp~iiVlNKiDlv~~~~~~~~~~~~~~---~l~~ 141 (170)
T cd01876 65 KEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKK---ELKL 141 (170)
T ss_pred HHHHHHHHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHH---HHHC
T ss_conf 9999999999998406334999999632237486899999998769987999986753787789999999999---8742
Q ss_pred CHHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 301104266887886591646742233486413555321024
Q gi|254780233|r 168 TDAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 168 ~de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
. ....|+++.||++| .|++.|++.|.+++
T Consensus 142 ~--~~~~~ii~iSA~~g-----------~gi~~L~~~I~~~L 170 (170)
T cd01876 142 F--EIDPPIILFSSLKG-----------QGIDELRALIEKWL 170 (170)
T ss_pred C--CCCCEEEEEECCCC-----------CCHHHHHHHHHHHC
T ss_conf 1--79983999988999-----------77999999999859
No 106
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.69 E-value=8.9e-16 Score=122.80 Aligned_cols=155 Identities=30% Similarity=0.313 Sum_probs=113.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCC-----
Q ss_conf 149998546898778899999983961423220000038857798709606467999998997999972898754-----
Q gi|254780233|r 20 RNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHAD----- 94 (624)
Q Consensus 20 RNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~D----- 94 (624)
-+|||+|---.|||||+.+||.+--++.... -|.|--+-...+.|++.++.|+||+|-..
T Consensus 173 iriaivGrPNvGKSTl~N~ll~~~r~ivs~~---------------~GtTrD~i~~~~~~~~~~~~~iDTaGirkk~k~~ 237 (429)
T TIGR03594 173 IKIAIIGRPNVGKSTLVNALLGEERVIVSDI---------------AGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVT 237 (429)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCC---------------CCCCCCCEEEEEEECCEEEEEEECCCCCCCCCCC
T ss_conf 2699974887654677777654333214799---------------9863102687999999089999898876366423
Q ss_pred ----C--HHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC-CC-CHHHHHHHHHHHHHHCC
Q ss_conf ----0--7999999874217899997687886478999999997299789999754366-74-02568999998886226
Q gi|254780233|r 95 ----F--GGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRS-DA-RADEVINEVFDLFSALD 166 (624)
Q Consensus 95 ----F--~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~-~a-~~~~v~~ei~dlf~~l~ 166 (624)
+ .....++++.+|.|+||+||.+|+..|-..++..+.+.|.|.|+++||.|.- +. ..++...++...|-.+
T Consensus 238 ~~~e~~s~~~t~~~i~~~dvvil~iD~~~~~~~qD~~i~~~i~~~~k~~ii~~NK~Dli~~~~~~~~~~~~i~~~l~~~- 316 (429)
T TIGR03594 238 EGIEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLALEAGKALIIVVNKWDLVKDEKTREEFKKELRRKLPFL- 316 (429)
T ss_pred HHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEHHHCCCCHHHHHHHHHHHHHHCCCC-
T ss_conf 0477999999999987447799999766588488899999898739976999972230379999999999999856236-
Q ss_pred CCHHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHH
Q ss_conf 7301104266887886591646742233486413555321
Q gi|254780233|r 167 ATDAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIV 206 (624)
Q Consensus 167 a~de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii 206 (624)
-..|++|.||++| .|+..||+.+.
T Consensus 317 -----~~~pI~fiSA~~g-----------~gi~kl~~~i~ 340 (429)
T TIGR03594 317 -----DFAPIVFISALTG-----------QGVDKLLDAID 340 (429)
T ss_pred -----CCCCEEEEECCCC-----------CCHHHHHHHHH
T ss_conf -----8986899734577-----------89999999999
No 107
>PRK00093 engA GTP-binding protein EngA; Reviewed
Probab=99.68 E-value=1.2e-15 Score=121.99 Aligned_cols=156 Identities=29% Similarity=0.338 Sum_probs=113.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCC--
Q ss_conf 431499985468987788999999839614232200000388577987096064679999989979999728987540--
Q gi|254780233|r 18 QIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADF-- 95 (624)
Q Consensus 18 ~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF-- 95 (624)
.| +|||||---.|||||+.+||-+--++.... -|.|.-+-...+.|++.++.|+||+|-.--
T Consensus 172 ~i-riaiiGrpNvGKStl~N~ll~~~r~ivs~~---------------~GtTrD~i~~~~~~~~~~~~~iDTaGirkk~k 235 (438)
T PRK00093 172 PI-KIAIIGRPNVGKSTLINALLGEERVIVSDI---------------AGTTRDSIDTPFERDGQKYTLIDTAGIRRRGK 235 (438)
T ss_pred CE-EEEEECCCCCCHHHHHHHHHHHHHHHCCCC---------------CCCCCCCEEEEEEECCCEEEEEECCCCCCCCC
T ss_conf 60-599955888655678887654333204799---------------98511232679998996799998989876564
Q ss_pred ---------HHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCC---HHHHHHHHHHHHH
Q ss_conf ---------7999999874217899997687886478999999997299789999754366740---2568999998886
Q gi|254780233|r 96 ---------GGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDAR---ADEVINEVFDLFS 163 (624)
Q Consensus 96 ---------~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~---~~~v~~ei~dlf~ 163 (624)
.....++++-+|-|+||+||.+|+.-|-..+...+.+.|.+.|+++||+|.-..+ .++..+++...|-
T Consensus 236 ~~~~iE~~s~~~t~~~i~~~dvvilviDa~~~~~~qD~~i~~~i~~~gk~~ii~vNKwDLv~~~~~~~~~~~~~i~~~l~ 315 (438)
T PRK00093 236 VTEGIEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVEKDSKTMEEVKEELRRRLP 315 (438)
T ss_pred CCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECHHCCCCCHHHHHHHHHHHHHHCC
T ss_conf 21378899999999998644669999976658848889999999981996699997022256638999999999997561
Q ss_pred HCCCCHHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHH
Q ss_conf 2267301104266887886591646742233486413555321
Q gi|254780233|r 164 ALDATDAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIV 206 (624)
Q Consensus 164 ~l~a~de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii 206 (624)
.+ -..|++|.||++| .|+..||+.+.
T Consensus 316 ~~------~~~pIvfiSA~~g-----------~gi~kl~~~i~ 341 (438)
T PRK00093 316 FL------DFAPIVFISALTG-----------QGVDKLFESIL 341 (438)
T ss_pred CC------CCCCEEEEECCCC-----------CCHHHHHHHHH
T ss_conf 25------8987799851477-----------79999999999
No 108
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=99.65 E-value=6.4e-17 Score=130.31 Aligned_cols=81 Identities=25% Similarity=0.306 Sum_probs=73.0
Q ss_pred CCCCCCCC--C-CCCCEEEEEEECCCCCCCCCEEEEECCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 01111013--6-77734999996078051598899960578501211455301103665344411254554322223321
Q gi|254780233|r 221 MIGTILEK--D-PFLGRIVTGRIHSGTIKSNQNIKALSPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSIAGLVKA 297 (624)
Q Consensus 221 ~~V~~i~~--d-~y~Gria~gRV~sGtlk~Gd~V~vl~~~g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIvaIaGl~~~ 297 (624)
.+|||+.. | +|+||++|.||+||++++|+.|++.+ . .+..|+++++.+++.+|+++++|.|||||++.|+.++
T Consensus 1 GfVFKiqanmd~~h~grlaf~RV~SG~l~~G~~v~n~r-t---gK~~ri~r~~~~~a~~Re~ie~A~aGDIvav~g~~~~ 76 (85)
T cd03689 1 GFVFKIQANMDPAHRDRIAFVRVCSGKFERGMKVKHVR-L---GKEVRLSNPQQFFAQDRETVDEAYPGDIIGLVNPGNF 76 (85)
T ss_pred CEEEEEECCCCCCCCCEEEEEEEEEEEECCCCEEEECC-C---CCEEEECCHHHHHHCCCEEECEEECCCEEEEECCCCC
T ss_conf 94899853799100771899999872986899999712-7---9678835445332277008034938989998279987
Q ss_pred CCCCEECC
Q ss_conf 01221105
Q gi|254780233|r 298 TVADTFCD 305 (624)
Q Consensus 298 ~iGDTL~~ 305 (624)
.+|||||+
T Consensus 77 ~tGDTL~~ 84 (85)
T cd03689 77 QIGDTLTE 84 (85)
T ss_pred EECCCCCC
T ss_conf 31465137
No 109
>PRK00454 engB GTPase EngB; Reviewed
Probab=99.64 E-value=3.9e-15 Score=118.61 Aligned_cols=160 Identities=21% Similarity=0.269 Sum_probs=107.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCC--CC
Q ss_conf 2431499985468987788999999839614232200000388577987096064679999989979999728987--54
Q gi|254780233|r 17 MQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGH--AD 94 (624)
Q Consensus 17 ~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH--~D 94 (624)
.++=-|||+|---.|||||..+|+-+-. + -.+. + ..|.|- ...+.+.+..+.++||||+ +.
T Consensus 22 ~~~p~VaivGrpNvGKSTL~N~L~g~k~-~---a~vs----~------~pgtTr---~i~~~~~~~~~~lvDtpGyG~a~ 84 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKN-L---ARTS----K------TPGRTQ---LINFFEVNDGLRLVDLPGYGYAK 84 (196)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC-E---EEEE----C------CCCCEE---EEEEEECCCCEEEEECCCCCCCC
T ss_conf 8896899984898889999999868973-6---9974----7------888607---98887618833899379974132
Q ss_pred --------CHHHHHHHH---HHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC-CCHHHHHHHHHHHH
Q ss_conf --------079999998---742178999976878864789999999972997899997543667-40256899999888
Q gi|254780233|r 95 --------FGGEVERIL---CMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSD-ARADEVINEVFDLF 162 (624)
Q Consensus 95 --------F~gEVer~l---~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~-a~~~~v~~ei~dlf 162 (624)
|...++..+ .-.+.++++|||.+|+..|-+.++..+.+.+.|.++++||+|+-. ....+.+.++.+.+
T Consensus 85 ~~~~~~~~~~~~i~~yl~~~~~l~~villIDa~~g~~~~D~~i~~~l~~~~~p~iivlNKiD~l~~~~~~~~~~~i~~~l 164 (196)
T PRK00454 85 VSKEEKEKWQKLIEEYLQKRENLKGVVLLIDSRHPLKELDLEMIEWLKEAGIPVLIVLTKADKLKKGERKKLLKKVKKAL 164 (196)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCHHCCHHHHHHHHHHHHHHH
T ss_conf 77878889999999999962333638999971658988899999999862778599998725169789999999999997
Q ss_pred HHCCCCHHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 62267301104266887886591646742233486413555321024
Q gi|254780233|r 163 SALDATDAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 163 ~~l~a~de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
..... ..|+++.||++| .|++.|++.|.+++
T Consensus 165 ~~~~~-----~~~ii~ISA~~g-----------~GI~eL~~~I~k~L 195 (196)
T PRK00454 165 ARFAA-----DPEVLLFSSLKK-----------TGIDELRAAIAKWL 195 (196)
T ss_pred HHCCC-----CCCEEEEECCCC-----------CCHHHHHHHHHHHH
T ss_conf 61258-----982899969999-----------79899999999985
No 110
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.63 E-value=6.3e-15 Score=117.19 Aligned_cols=156 Identities=25% Similarity=0.341 Sum_probs=118.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCC-------
Q ss_conf 1499985468987788999999839614232200000388577987096064679999989979999728987-------
Q gi|254780233|r 20 RNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGH------- 92 (624)
Q Consensus 20 RNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH------- 92 (624)
.-|||||..-.|||||+.+||.+--++.... -|.|+-|-.+.++|++.++-+|||-|-
T Consensus 179 ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~---------------aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~ 243 (444)
T COG1160 179 IKIAIIGRPNVGKSSLINAILGEERVIVSDI---------------AGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKIT 243 (444)
T ss_pred EEEEEEECCCCCCHHHHHHHCCCCEEEECCC---------------CCCCCCCEEEEEEECCEEEEEEECCCCCCCCCCC
T ss_conf 0899992787870588877506825984599---------------9862203312589988189999877877466412
Q ss_pred ---CCCH-HHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC---CCHHHHHHHHHHHHHHC
Q ss_conf ---5407-9999998742178999976878864789999999972997899997543667---40256899999888622
Q gi|254780233|r 93 ---ADFG-GEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSD---ARADEVINEVFDLFSAL 165 (624)
Q Consensus 93 ---~DF~-gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~---a~~~~v~~ei~dlf~~l 165 (624)
.-|+ .-..+++..+|-++||+||.+|..-|-..+...+.+.|.+.++++||-|.-. +..++...++...|--+
T Consensus 244 e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l 323 (444)
T COG1160 244 ESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFL 323 (444)
T ss_pred CCEEEEEEHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 42688750546767865688999998887836889999999997589749999753257851667999999999872213
Q ss_pred CCCHHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHC
Q ss_conf 673011042668878865916467422334864135553210
Q gi|254780233|r 166 DATDAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVD 207 (624)
Q Consensus 166 ~a~de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~ 207 (624)
+. .|++|.||++| .++..||++|.+
T Consensus 324 ~~------a~i~~iSA~~~-----------~~i~~l~~~i~~ 348 (444)
T COG1160 324 DF------APIVFISALTG-----------QGLDKLFEAIKE 348 (444)
T ss_pred CC------CEEEEEEECCC-----------CCHHHHHHHHHH
T ss_conf 67------72799970478-----------772788999999
No 111
>pfam02421 FeoB_N Ferrous iron transport protein B. Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.63 E-value=5.2e-15 Score=117.74 Aligned_cols=154 Identities=26% Similarity=0.444 Sum_probs=103.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHH--H
Q ss_conf 49998546898778899999983961423220000038857798709606467999998997999972898754079--9
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGG--E 98 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~g--E 98 (624)
.|||+|.--.|||||..+|+ |. +..+.+ . -|.|.-.....+.|++..+.|+||||..++.. +
T Consensus 1 tVaIvG~PNvGKSTLlN~L~---g~---~~~Vs~----~------pGtTrd~~~~~~~~~~~~~~lvDTpGi~~~~~~~~ 64 (188)
T pfam02421 1 TIALVGNPNVGKTTLFNALT---GA---RQHVGN----W------PGVTVEKKEGTFKYKGYEIEIVDLPGTYSLSPYSE 64 (188)
T ss_pred CEEEECCCCCCHHHHHHHHH---CC---CCEEEC----C------CCCCCCEEEEEEEECCEEEEEEECCCCCCCCCCCH
T ss_conf 98998899989999999995---99---965638----9------99723335768752516799996888501465327
Q ss_pred HHHH----H--HHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHC
Q ss_conf 9999----8--742178999976878864789999999972997899997543667402568999998886226730110
Q gi|254780233|r 99 VERI----L--CMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQL 172 (624)
Q Consensus 99 Ver~----l--~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~l 172 (624)
-|++ + .-+|-+|+|+||.. + .++.+.+.+..+.+.|.|+++||+|..... ........+ .+.+
T Consensus 65 ~e~v~~~~~~~~~aDlvl~vvDa~~-~-er~l~l~~~l~~~~~p~IvVlNK~Dl~~~~--~~~~~~~~l-------~~~l 133 (188)
T pfam02421 65 EEKVARDYLLEEKPDVIINVVDATN-L-ERNLYLTLQLLELGIPVVVALNMMDEAEKK--GIKIDIKKL-------SELL 133 (188)
T ss_pred HHHHHHHHHHHCCCCCEEEEEECCC-H-HHHHHHHHHHHHCCCCEEEEECCCHHCCCC--CCHHHHHHH-------HHHC
T ss_conf 8999999986236873699976762-4-544899999997699889996170201003--652039999-------9873
Q ss_pred CHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCCC
Q ss_conf 4266887886591646742233486413555321024542
Q gi|254780233|r 173 DFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPP 212 (624)
Q Consensus 173 d~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~P 212 (624)
.+|+++.||++| .|+..|++.|++.++.+
T Consensus 134 g~~vi~ISA~~g-----------~Gi~eL~~~I~~~~~~~ 162 (188)
T pfam02421 134 GVPVVPTSARKG-----------EGIDELKDAIIEVAEGK 162 (188)
T ss_pred CCCEEEEEEECC-----------CCHHHHHHHHHHHHHCC
T ss_conf 996899993169-----------99999999999997268
No 112
>KOG0052 consensus
Probab=99.63 E-value=7.2e-17 Score=129.95 Aligned_cols=140 Identities=32% Similarity=0.423 Sum_probs=103.6
Q ss_pred CCCCCCC-EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCC--------------C-CEECCCCHHHHHCCCEEEEEEEEE
Q ss_conf 6802431-49998546898778899999983961423220--------------0-000388577987096064679999
Q gi|254780233|r 14 LGYMQIR-NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRV--------------S-ERVMDCNDLEKERGITILAKVTSI 77 (624)
Q Consensus 14 ~~~~~IR-NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v--------------~-~~vmD~~~~EreRGITI~a~~~~~ 77 (624)
|.++++| ||.+|+|+|+||+|+.. +.+|.++.+... . ..++|....||+|||||....-.+
T Consensus 1 ~~~~~~~~ni~~i~h~~s~~stt~~---~~~g~id~~~~~k~~keaa~~~kgsf~~a~~~dk~~ae~~r~i~I~~~l~~~ 77 (391)
T KOG0052 1 MGKEKIHINIVVIGHVDSGKSTTTG---YKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKF 77 (391)
T ss_pred CCCCCCCCCEEEEEEEEEEEEEEEE---EECCCCCCHHHHHHCHHHHHHCCCEEEEEEEECHHHHCCCCCEEEEEEEECC
T ss_conf 9877653025898763221268986---3036645301333066777635641665543111121114654899985043
Q ss_pred EECCEEEEEECCCCCCCCHHHHHHHHHHHCEEEEEEECCCC-------CCHHHHHHHHHHHHCCC-CEEEEEECCCCCC-
Q ss_conf 98997999972898754079999998742178999976878-------86478999999997299-7899997543667-
Q gi|254780233|r 78 VWNDVRINIVDTPGHADFGGEVERILCMVESVVVLVDAAEG-------PMPQTKFVVGKALKIGL-RPIVVVNKVDRSD- 148 (624)
Q Consensus 78 ~~~~~~iNiiDTPGH~DF~gEVer~l~~~DgaiLvVdA~eG-------v~~QT~~vl~~A~~~~l-~~IvvINKiDr~~- 148 (624)
.-..+-+++||.|||.||+-.+....+++|.|+|.|.|.-| --.||+.+.-.|..++. +.|+.+||||...
T Consensus 78 ~t~k~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv~qliv~v~k~D~~~~ 157 (391)
T KOG0052 78 ETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEP 157 (391)
T ss_pred CCEEEEEEEECCCCCCCEEEEEEEEEEEECCEEEEEEEECCCEEEECCCCCHHHHHHHHHCCCCCEEEEEEEECCCCCCC
T ss_conf 31067799853778874214687668762305899975035335520335114456555310353145677603433688
Q ss_pred ----CCHHHHHH
Q ss_conf ----40256899
Q gi|254780233|r 149 ----ARADEVIN 156 (624)
Q Consensus 149 ----a~~~~v~~ 156 (624)
+++.++..
T Consensus 158 ~~s~~r~~ei~k 169 (391)
T KOG0052 158 PYSEARYEEIKK 169 (391)
T ss_pred CCCCCCHHHHEE
T ss_conf 733463231002
No 113
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.60 E-value=7.3e-15 Score=116.78 Aligned_cols=145 Identities=26% Similarity=0.334 Sum_probs=101.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHH
Q ss_conf 49998546898778899999983961423220000038857798709606467999998997999972898754079999
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVE 100 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVe 100 (624)
+|||+|.-.+|||||..+|. |. +...|. + .-|.|--.....+.|++++|.|+||||..+....+|
T Consensus 3 ~ValvG~pN~GKStL~N~l~---g~--~~~ivs----~------~pgtTrd~~~~~~~~~~~~i~l~DTpG~~~~~~~~e 67 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALA---GR--DRAIVS----D------IAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIE 67 (157)
T ss_pred EEEEECCCCCCHHHHHHHHH---CC--CCEEEC----C------CCCEEEECCEEEEEECCEEEEEEECCCCCCCCCHHH
T ss_conf 99998899998999999996---89--733432----8------898478632678953998899972677544457899
Q ss_pred -----HH---HHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHC
Q ss_conf -----99---8742178999976878864789999999972997899997543667402568999998886226730110
Q gi|254780233|r 101 -----RI---LCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQL 172 (624)
Q Consensus 101 -----r~---l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~l 172 (624)
|+ +.-+|.+++|+|+.++...+-...+.. ..+.|.++++||+|+.+.. + .+. . ..
T Consensus 68 ~~~~~~~~~~i~~aDlil~vvD~~~~~~~~~~~~~~~--~~~~p~i~v~NKiDl~~~~--~----~~~---~------~~ 130 (157)
T cd04164 68 KIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLPDS--E----LLS---L------LA 130 (157)
T ss_pred HHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHH--HCCCCEEEEEECCCCCCCH--H----HHH---H------CC
T ss_conf 9999999863015767999988987788889999985--1479989999676014866--6----798---5------28
Q ss_pred CHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 426688788659164674223348641355532102
Q gi|254780233|r 173 DFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDH 208 (624)
Q Consensus 173 d~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~ 208 (624)
..|+++.||++| .|++.|++.|++.
T Consensus 131 ~~~vi~ISA~~g-----------~Gi~~L~~~I~e~ 155 (157)
T cd04164 131 GKPIIAISAKTG-----------EGLDELKEALLEL 155 (157)
T ss_pred CCCEEEEECCCC-----------CCHHHHHHHHHHH
T ss_conf 997799985279-----------5999999999997
No 114
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.60 E-value=2.3e-14 Score=113.52 Aligned_cols=160 Identities=21% Similarity=0.297 Sum_probs=110.3
Q ss_pred CCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCC
Q ss_conf 34680243149998546898778899999983961423220000038857798709606467999998997999972898
Q gi|254780233|r 12 GRLGYMQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPG 91 (624)
Q Consensus 12 ~~~~~~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPG 91 (624)
.+|...++ +|.++|.-++|||||+.+++ .+.+.. . ..|+.....++.++++++++.||+|
T Consensus 8 ~~~~~~~~-KililG~~~sGKTsll~~l~--~~~~~~---~--------------~pT~G~~~~~~~~~~~~l~iwD~~G 67 (173)
T cd04154 8 QKLKEREM-RILILGLDNAGKTTILKKLL--GEDIDT---I--------------SPTLGFQIKTLEYEGYKLNIWDVGG 67 (173)
T ss_pred HHCCCCCE-EEEEECCCCCCHHHHHHHHC--CCCCCC---C--------------CCCCCEEEEEEEECCEEEEEEECCC
T ss_conf 55445731-89999899978899999983--999897---2--------------6705777899998999999996688
Q ss_pred CCCCHHHHHHHHHHHCEEEEEEECCCCCC-HHHHHHHHHHH----HCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 75407999999874217899997687886-47899999999----72997899997543667402568999998886226
Q gi|254780233|r 92 HADFGGEVERILCMVESVVVLVDAAEGPM-PQTKFVVGKAL----KIGLRPIVVVNKVDRSDARADEVINEVFDLFSALD 166 (624)
Q Consensus 92 H~DF~gEVer~l~~~DgaiLvVdA~eGv~-~QT~~vl~~A~----~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~ 166 (624)
+..|..-...-.+-+|++++|||+++--. .+.+..|...+ ..+.|.+++.||+|.+++...+-+.+..++. .
T Consensus 68 ~e~~~~~~~~y~~~a~~ii~VvD~td~~~~~~~~~~l~~ll~~~~~~~~pili~~NK~Dl~~~~~~~ei~~~l~l~-~-- 144 (173)
T cd04154 68 QKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELD-K-- 144 (173)
T ss_pred CCCCCHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHH-H--
T ss_conf 6020058999722665389998556578899999999999863541598479998765677788999999998687-4--
Q ss_pred CCHHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHC
Q ss_conf 73011042668878865916467422334864135553210
Q gi|254780233|r 167 ATDAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVD 207 (624)
Q Consensus 167 a~de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~ 207 (624)
.. ...++++++||++| .|+.++|+.|++
T Consensus 145 ~~--~~~~~~~~~SAktG-----------~gI~e~f~wL~~ 172 (173)
T cd04154 145 IS--SHHWRIQPCSAVTG-----------EGLLQGIDWLVD 172 (173)
T ss_pred CC--CCCCEEEEEECCCC-----------CCHHHHHHHHHC
T ss_conf 45--79829999889669-----------298999999864
No 115
>pfam00025 Arf ADP-ribosylation factor family. Pfam combines a number of different Prosite families together
Probab=99.59 E-value=4.8e-14 Score=111.42 Aligned_cols=155 Identities=20% Similarity=0.283 Sum_probs=105.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHH
Q ss_conf 14999854689877889999998396142322000003885779870960646799999899799997289875407999
Q gi|254780233|r 20 RNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEV 99 (624)
Q Consensus 20 RNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEV 99 (624)
-.|.++|..++|||||..++. .+.+.. . .+ --|.+ ...+.+++.++++.|||||..|..-.
T Consensus 15 ~Ki~llG~~~vGKTsll~~~~--~~~~~~---~-------~p---Tig~~----~~~v~~~~~~~~iwDt~Gqe~~~~~~ 75 (174)
T pfam00025 15 MRILILGLDNAGKTTILYKLK--LGEIVT---T-------IP---TIGFN----VETVTYKNVKFTVWDVGGQESLRPLW 75 (174)
T ss_pred EEEEEECCCCCCHHHHHHHHH--CCCCCC---C-------CC---CCCCE----EEEEEECCEEEEEEECCCCCCCCHHH
T ss_conf 699999999998899999995--499887---4-------47---46823----89999899999998279870232679
Q ss_pred HHHHHHHCEEEEEEECCCCC-CHHHHHHHHHHHH----CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCH
Q ss_conf 99987421789999768788-6478999999997----299789999754366740256899999888622673011042
Q gi|254780233|r 100 ERILCMVESVVVLVDAAEGP-MPQTKFVVGKALK----IGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDF 174 (624)
Q Consensus 100 er~l~~~DgaiLvVdA~eGv-~~QT~~vl~~A~~----~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~ 174 (624)
..-.+-+|++++|+|+++-- ..+.+.-|...+. .++|.+++.||+|.+++...+-+.+...+. .+. ...+
T Consensus 76 ~~y~~~a~~ii~V~D~t~~~s~~~~~~~l~~~l~~~~~~~~piliv~NK~DL~~~~~~~ei~~~~~~~---~~~--~~~~ 150 (174)
T pfam00025 76 RNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELADAPLLILANKQDLPGAMSEAEIRELLGLH---ELK--SRPW 150 (174)
T ss_pred HHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHH---HCC--CCCC
T ss_conf 98841782689998678678799999999998754235897089987256676789999999999786---441--7996
Q ss_pred HHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 66887886591646742233486413555321024
Q gi|254780233|r 175 PILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 175 Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
+++.+||++| .|++.+|+.|..++
T Consensus 151 ~~~~~SAktG-----------~gI~e~f~~L~~~I 174 (174)
T pfam00025 151 EIQGCSAVTG-----------EGLDEGLDWLSNYI 174 (174)
T ss_pred EEEEEECCCC-----------CCHHHHHHHHHHHC
T ss_conf 8999988679-----------59899999999539
No 116
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.58 E-value=3.6e-14 Score=112.27 Aligned_cols=158 Identities=20% Similarity=0.262 Sum_probs=108.6
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCC
Q ss_conf 80243149998546898778899999983961423220000038857798709606467999998997999972898754
Q gi|254780233|r 15 GYMQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHAD 94 (624)
Q Consensus 15 ~~~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~D 94 (624)
...+...|+|+|+-++|||||+.++.. +.+.. . ..|+.....++.++++++++.|||||.-
T Consensus 10 ~~~~~~Ki~ilG~~~sGKTsll~~l~~--~~~~~---~--------------~pT~g~~~~~v~~~~~~~~lwD~~G~~~ 70 (173)
T cd04155 10 KSSEEPRILILGLDNAGKTTILKQLAS--EDISH---I--------------TPTQGFNIKTVQSDGFKLNVWDIGGQRA 70 (173)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHC--CCCCC---C--------------CCCCCEEEEEEEECCEEEEEEECCCCHH
T ss_conf 568775899997999988999999856--99866---0--------------6811323799998999999985587510
Q ss_pred CHHHHHHHHHHHCEEEEEEECCCCC-CHHHHHHHHHHH----HCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCH
Q ss_conf 0799999987421789999768788-647899999999----72997899997543667402568999998886226730
Q gi|254780233|r 95 FGGEVERILCMVESVVVLVDAAEGP-MPQTKFVVGKAL----KIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATD 169 (624)
Q Consensus 95 F~gEVer~l~~~DgaiLvVdA~eGv-~~QT~~vl~~A~----~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~d 169 (624)
|..-.....+-+|++|+|||+++-- ..+++..|...+ ..++|.+++.||+|.++|...+-+.+.+++. ++ .+
T Consensus 71 ~~~~~~~y~~~a~~iI~VvD~td~~~~~~~~~~l~~~l~~~~~~~~PiLiv~NK~Dl~~a~~~~eI~~~l~l~-~~--~~ 147 (173)
T cd04155 71 IRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLH-DL--RD 147 (173)
T ss_pred HHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHCHH-HC--CC
T ss_conf 1268997655563799999667568899999999999741300698389999766677789999999985876-43--48
Q ss_pred HHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHC
Q ss_conf 11042668878865916467422334864135553210
Q gi|254780233|r 170 AQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVD 207 (624)
Q Consensus 170 e~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~ 207 (624)
. .+.+.++||++| .|+++.||.|++
T Consensus 148 ~--~~~i~~~SA~tG-----------~Gi~E~f~WL~~ 172 (173)
T cd04155 148 R--TWHIQACSAKTG-----------EGLQEGMNWVCK 172 (173)
T ss_pred C--CCEEEEEECCCC-----------CCHHHHHHHHHC
T ss_conf 8--758999578579-----------398999999854
No 117
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.57 E-value=7.8e-14 Score=110.02 Aligned_cols=168 Identities=24% Similarity=0.275 Sum_probs=114.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECC-EEEEEECCCCCCCCHHHH
Q ss_conf 4999854689877889999998396142322000003885779870960646799999899-799997289875407999
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWND-VRINIVDTPGHADFGGEV 99 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~-~~iNiiDTPGH~DF~gEV 99 (624)
-|+|+|-+|+||||.+.++-+........-..+ ++... .|-.|+.--.-++.+++ +.+.|.|||||.-|-.--
T Consensus 12 KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~----~s~k~--kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~ 85 (187)
T COG2229 12 KIVVIGPVGAGKTTFVRALSDKPLVITEADASS----VSGKG--KRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMW 85 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCEEECCCCC----CCCCC--CCCEEEEECCCCEEECCCCEEEEECCCCCHHHHHHH
T ss_conf 699984436640667887653456201033555----54466--455068632411377586168996589707789899
Q ss_pred HHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCC-CCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHH
Q ss_conf 99987421789999768788647899999999729-97899997543667402568999998886226730110426688
Q gi|254780233|r 100 ERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIG-LRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFPILY 178 (624)
Q Consensus 100 er~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~-l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~Pv~~ 178 (624)
+-..+-++||+++||+..++--.-++.+..-...+ +|.+|++||.|.++|++-+.+.+.+++- + +..|++.
T Consensus 86 ~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~--~------~~~~vi~ 157 (187)
T COG2229 86 EILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREALKLE--L------LSVPVIE 157 (187)
T ss_pred HHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHC--C------CCCCEEE
T ss_conf 9874876428999956999646789999988520688789995042257789989999999711--2------7986443
Q ss_pred HHHHCCEECCCCCCCCCCCCHHHHHHHHCC-CCCCC
Q ss_conf 788659164674223348641355532102-45422
Q gi|254780233|r 179 GSGRFGWMSDSSDGSRDQGMVPLLNLIVDH-VPPPV 213 (624)
Q Consensus 179 ~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~-iP~P~ 213 (624)
.+|.++ .+....|+.+..+ .+.|.
T Consensus 158 ~~a~e~-----------~~~~~~L~~ll~~~~~~~~ 182 (187)
T COG2229 158 IDATEG-----------EGARDQLDVLLLKDLLGSA 182 (187)
T ss_pred EECCCC-----------HHHHHHHHHHHHHCCCCCC
T ss_conf 442463-----------4178999998730356755
No 118
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.56 E-value=8.4e-14 Score=109.84 Aligned_cols=159 Identities=21% Similarity=0.286 Sum_probs=107.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCC-CCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHH
Q ss_conf 999854689877889999998396142322-0000038857798709606467999998997999972898754079999
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQR-VSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVE 100 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~-v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVe 100 (624)
|.++|.-++|||||..+|- ..+..... ..++ -..||......+.|++.+++|.||||+..|..-..
T Consensus 2 ivilG~~~~GKTsll~~l~---~~~~~~~~~~~~~----------~~~Tvg~~~~~i~~~~~~l~iwD~~Gqe~~~~l~~ 68 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLK---TLFSKYKGLPPSK----------ITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWD 68 (167)
T ss_pred EEEECCCCCCHHHHHHHHH---HCCCCCCCCCCCC----------CCCCCCEEEEEEEECCEEEEEEECCCCHHHHHHHH
T ss_conf 9999999988889999887---5036767776554----------03531326899998999999996898788878998
Q ss_pred HHHHHHCEEEEEEECCCC-CCHHHHHHHHHHH----HCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHH
Q ss_conf 998742178999976878-8647899999999----72997899997543667402568999998886226730110426
Q gi|254780233|r 101 RILCMVESVVVLVDAAEG-PMPQTKFVVGKAL----KIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFP 175 (624)
Q Consensus 101 r~l~~~DgaiLvVdA~eG-v~~QT~~vl~~A~----~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~P 175 (624)
.-.+-++|+|+|||+.+- -..+.+..|...+ ..++|.+++.||+|.+++...+-+.+.+++.... +. .-+++
T Consensus 69 ~y~~~a~~ii~VvD~sd~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~ei~~~~~~~~~~-~~--~~~~~ 145 (167)
T cd04160 69 KYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEE-IG--RRDCL 145 (167)
T ss_pred HHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHH-HC--CCCCE
T ss_conf 7428987899998668678899999999997511024896299997066766577899999999999998-54--69989
Q ss_pred HHHHHHHCCEECCCCCCCCCCCCHHHHHHHHC
Q ss_conf 68878865916467422334864135553210
Q gi|254780233|r 176 ILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVD 207 (624)
Q Consensus 176 v~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~ 207 (624)
++.+||++| .|++..|+.+++
T Consensus 146 ~~~~SAktG-----------~Gv~e~f~wL~~ 166 (167)
T cd04160 146 VLPVSALEG-----------TGVREGIEWLVE 166 (167)
T ss_pred EEEEECCCC-----------CCHHHHHHHHHC
T ss_conf 999887829-----------498999999965
No 119
>KOG0463 consensus
Probab=99.56 E-value=1.6e-14 Score=114.50 Aligned_cols=271 Identities=25% Similarity=0.397 Sum_probs=171.6
Q ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCE-ECCCCHHHHHCCCE------EEE-------------
Q ss_conf 4680243149998546898778899999983961423220000-03885779870960------646-------------
Q gi|254780233|r 13 RLGYMQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSER-VMDCNDLEKERGIT------ILA------------- 72 (624)
Q Consensus 13 ~~~~~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~-vmD~~~~EreRGIT------I~a------------- 72 (624)
.-++..+| +|++|.||+||+||..-|- -|.+ ++|+...| -+=.+.-|-|-|-| |+-
T Consensus 128 ~~DF~E~R-VAVVGNVDAGKSTLLGVLT--HgeL-DnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~ 203 (641)
T KOG0463 128 EKDFIEAR-VAVVGNVDAGKSTLLGVLT--HGEL-DNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDP 203 (641)
T ss_pred CCCCEEEE-EEEEECCCCCCCEEEEEEE--ECCC-CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCC
T ss_conf 75501379-8997122477221676653--0443-467227788776522310367544556620200254642158898
Q ss_pred EEEEEEEC------CEEEEEECCCCCCCCHHHHHHHH--HHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 79999989------97999972898754079999998--74217899997687886478999999997299789999754
Q gi|254780233|r 73 KVTSIVWN------DVRINIVDTPGHADFGGEVERIL--CMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKV 144 (624)
Q Consensus 73 ~~~~~~~~------~~~iNiiDTPGH~DF~gEVer~l--~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKi 144 (624)
..-+++|- -..|++||--||.-+---.-=.+ .|-|...|.|-|..|+---|+.+|..|+.+++|..||++||
T Consensus 204 Hg~~LdWvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKI 283 (641)
T KOG0463 204 HGHNLDWVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKI 283 (641)
T ss_pred CCCCCCCEEECCCCCEEEEEEECCCHHHHHHEEEECCCCCCCCCEEEEECCCCCCEECCHHHHHHHHHHCCCEEEEEEEE
T ss_conf 88864313431364226898861541552311441033678872589851666511144776545564268579999850
Q ss_pred CCCCCCHHHHHHHHHHHHHHC----CCC---------HHH----CCH------HHHHHHHHCCEECCCCCCCCCCCCHHH
Q ss_conf 366740256899999888622----673---------011----042------668878865916467422334864135
Q gi|254780233|r 145 DRSDARADEVINEVFDLFSAL----DAT---------DAQ----LDF------PILYGSGRFGWMSDSSDGSRDQGMVPL 201 (624)
Q Consensus 145 Dr~~a~~~~v~~ei~dlf~~l----~a~---------de~----ld~------Pv~~~Sa~~G~~~~~~~~~~~~gl~~L 201 (624)
|---| .+++|...|+..| ++. |+. .+| |++-.|-.+| .++ ||
T Consensus 284 DMCPA---NiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG-----------~NL-~L 348 (641)
T KOG0463 284 DMCPA---NILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTG-----------TNL-PL 348 (641)
T ss_pred CCCCH---HHHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCEEEECCCCC-----------CCH-HH
T ss_conf 55817---8999999999998628776507578851564478613586212354078615667-----------783-89
Q ss_pred HHHHHCCCCC--CCCCCCHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCC--CCEEECCCCCEEEECCCCC
Q ss_conf 5532102454--22332000001111013677734999996078051598899960578--5012114553011036653
Q gi|254780233|r 202 LNLIVDHVPP--PVISEGEFKMIGTILEKDPFLGRIVTGRIHSGTIKSNQNIKALSPDG--ALVEVGRVSKILAFRGIDR 277 (624)
Q Consensus 202 ld~Ii~~iP~--P~~~e~pl~~~V~~i~~d~y~Gria~gRV~sGtlk~Gd~V~vl~~~g--~~~~~~kV~~L~~~~G~~r 277 (624)
|.+.++.+|. |-.++.|..+++-.+++-|.+|.++.|...+|+|+-+|.+. +.++. .-.. -.|..|. .+|
T Consensus 349 LkmFLNlls~R~~~~E~~PAeFQIDD~Y~VpGVGTvvSGT~L~GtIrLND~Ll-LGPd~~G~F~p-I~iKSIH----RKR 422 (641)
T KOG0463 349 LKMFLNLLSLRRQLNENDPAEFQIDDIYWVPGVGTVVSGTLLSGTIRLNDILL-LGPDSNGDFMP-IPIKSIH----RKR 422 (641)
T ss_pred HHHHHHHCCCCCCCCCCCCCCEEECCEEECCCCCEEEECCEEEEEEEECCEEE-ECCCCCCCEEE-EEHHHHH----HCC
T ss_conf 99998643744566657973035222485178522764225521577522788-66788887645-3456645----403
Q ss_pred CCCCCCCCCCCC--CCCCCCC--CCCCCEECCCCC
Q ss_conf 444112545543--2222332--101221105565
Q gi|254780233|r 278 QPIDEAHAGDIV--SIAGLVK--ATVADTFCDPSI 308 (624)
Q Consensus 278 ~~v~ea~AGDIv--aIaGl~~--~~iGDTL~~~~~ 308 (624)
.+|.....|+-. |+.+++. ++-|-.+.++..
T Consensus 423 MpV~~VrcGQtASFALKKIkr~~vRKGMVmVsp~l 457 (641)
T KOG0463 423 MPVGIVRCGQTASFALKKIKRKDVRKGMVMVSPKL 457 (641)
T ss_pred CCCEEEECCCHHHHHHHHCCHHHHHCCEEEECCCC
T ss_conf 66148752640436766354666536418866877
No 120
>pfam10662 PduV-EutP Ethanolamine utilisation - propanediol utilisation. Members of this family function in ethanolamine and propanediol degradation pathways, however the exact roles of these proteins is poorly understood.
Probab=99.55 E-value=2.5e-14 Score=113.29 Aligned_cols=135 Identities=23% Similarity=0.263 Sum_probs=89.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCC----CCCCHH
Q ss_conf 9998546898778899999983961423220000038857798709606467999998997999972898----754079
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPG----HADFGG 97 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPG----H~DF~g 97 (624)
|||||...+|||||..+|+-+. |++ .|.-+.. +..++||||| |..|..
T Consensus 4 VaivGrpNvGKSTLlN~L~g~~------------------------i~~-~K~qtt~---~~~~~IDTPG~~~~~~~~~~ 55 (143)
T pfam10662 4 IMLIGRSGCGKTTLTQALNGEE------------------------LKY-KKTQAIE---FSDNMIDTPGEYLENRRFYS 55 (143)
T ss_pred EEEECCCCCCHHHHHHHHCCCC------------------------EEE-CCCEEEE---ECCCEEECCCCCCCCHHHHH
T ss_conf 9998999999999999975994------------------------451-7870798---55748999876656289999
Q ss_pred HHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHH
Q ss_conf 99999874217899997687886478999999997299789999754366740256899999888622673011042668
Q gi|254780233|r 98 EVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFPIL 177 (624)
Q Consensus 98 EVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~Pv~ 177 (624)
.+..+..=+|-+++|+||.+....... ..+...+.|.|++|||+|.... ++.+..+.+.+...+..+ ++
T Consensus 56 ~~~~~~~daDvil~vvDa~~~~~~~~~---~~~~~~~kpvIlViNKiD~~~~--~~~l~~~~~~~~~~~~~~------i~ 124 (143)
T pfam10662 56 ALIVTAADADVIALVQDATEPWSVFPP---GFASMFNKPVIGIITKIDLAKD--EANIEMVEEWLNNAGAEK------IF 124 (143)
T ss_pred HHHHHHHHCCEEEEEEECCCCCCCCCH---HHHHHCCCCEEEEEECCCCCCC--HHHHHHHHHHHHHCCCCE------EE
T ss_conf 999999649999999877886675687---7897547988999980224575--667899999997589987------99
Q ss_pred HHHHHCCEECCCCCCCCCCCCHHHHHHHH
Q ss_conf 87886591646742233486413555321
Q gi|254780233|r 178 YGSGRFGWMSDSSDGSRDQGMVPLLNLIV 206 (624)
Q Consensus 178 ~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii 206 (624)
+.||.+| .|++.|++.|-
T Consensus 125 ~iSA~~g-----------~Gid~L~~~l~ 142 (143)
T pfam10662 125 EVSAVTN-----------EGIDELFAYLE 142 (143)
T ss_pred EEECCCC-----------CCHHHHHHHHH
T ss_conf 9889899-----------89999999974
No 121
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.54 E-value=7.9e-14 Score=109.99 Aligned_cols=146 Identities=18% Similarity=0.186 Sum_probs=95.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCC----
Q ss_conf 2431499985468987788999999839614232200000388577987096064679999989979999728987----
Q gi|254780233|r 17 MQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGH---- 92 (624)
Q Consensus 17 ~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH---- 92 (624)
.+.=-|||+|.--.|||||..+|+-+-. .-.+. + ..|.|.. ..+.+.+..++++||||+
T Consensus 16 ~~~p~IaivGrpNvGKSTL~N~L~g~k~----~a~vs----~------~pGtTr~---i~~~~~~~~~~lvDtpGyG~~~ 78 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKK----LARTS----K------TPGRTQL---INFFEVNDGFRLVDLPGYGYAK 78 (179)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC----EEEEC----C------CCCEEEE---CCEEEECCCEEEEECCCHHHCC
T ss_conf 8897899986999888999999868985----58970----8------9973660---2320104736999777602112
Q ss_pred ------CCCHHHHHHHH---HHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC-CCHHHHHHHHHHHH
Q ss_conf ------54079999998---742178999976878864789999999972997899997543667-40256899999888
Q gi|254780233|r 93 ------ADFGGEVERIL---CMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSD-ARADEVINEVFDLF 162 (624)
Q Consensus 93 ------~DF~gEVer~l---~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~-a~~~~v~~ei~dlf 162 (624)
..|...++..+ ..++.+++|+||.+|...|-..++..+.+.+.|.++++||+|+-. ....+.+.++..-+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~l~~villiDa~~gl~~~D~~i~~~l~~~~kp~iivlNK~Dll~~~~~~~~~~~i~~~l 158 (179)
T TIGR03598 79 VSKEEKEKWQKLIEEYLRGRENLKGVVLLMDIRHPLKELDLEMLEWLDERGIPVLIVLTKADKLKKSERNKQLKKIKKAL 158 (179)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 78888999999999999998864302898743779989999999999975998899997813069899999999999997
Q ss_pred HHCCCCHHHCCHHHHHHHHHCC
Q ss_conf 6226730110426688788659
Q gi|254780233|r 163 SALDATDAQLDFPILYGSGRFG 184 (624)
Q Consensus 163 ~~l~a~de~ld~Pv~~~Sa~~G 184 (624)
.... -..|+++.||++|
T Consensus 159 ~~~~-----~~~~v~~ISA~~g 175 (179)
T TIGR03598 159 KKDA-----DDPSVQLFSSLKK 175 (179)
T ss_pred HCCC-----CCCCEEEEECCCC
T ss_conf 3366-----8894899979998
No 122
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.51 E-value=1.9e-13 Score=107.51 Aligned_cols=151 Identities=21% Similarity=0.217 Sum_probs=100.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHHH
Q ss_conf 99985468987788999999839614232200000388577987096064679999989979999728987540799999
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVER 101 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVer 101 (624)
|.++|.-+.|||||+.++.. +.+.. .. -|+......+.|++++++|.||||+.-|..-...
T Consensus 2 i~ilG~~~vGKTsll~~l~~--~~~~~---~~--------------pTig~~~~~i~~~~~~l~iwDt~G~~~~~~~~~~ 62 (158)
T cd00878 2 ILILGLDGAGKTTILYKLKL--GEVVT---TI--------------PTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKH 62 (158)
T ss_pred EEEECCCCCCHHHHHHHHHC--CCCCC---CC--------------CEECCCEEEEEECCEEEEEEECCCCCCCCHHHHH
T ss_conf 99999999988999999953--99887---44--------------5607408999848899999988997221448998
Q ss_pred HHHHHCEEEEEEECCCCC-CHHHHHHHHHHH----HCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHH
Q ss_conf 987421789999768788-647899999999----729978999975436674025689999988862267301104266
Q gi|254780233|r 102 ILCMVESVVVLVDAAEGP-MPQTKFVVGKAL----KIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFPI 176 (624)
Q Consensus 102 ~l~~~DgaiLvVdA~eGv-~~QT~~vl~~A~----~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~Pv 176 (624)
-.+-+|++|+|+|+.+=- ....+.-|...+ ..++|.+++.||+|.++++..+-+.+.+.+. . +. ...+++
T Consensus 63 y~~~a~~~i~V~D~t~~~s~~~~~~~~~~~~~~~~~~~~piliv~NK~Dl~~~~~~~ei~~~l~~~-~--~~--~~~~~~ 137 (158)
T cd00878 63 YYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLE-K--IL--GRRWHI 137 (158)
T ss_pred HHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHH-H--HC--CCCCEE
T ss_conf 727687768998379888999999999999866055765389876054766578999999998587-5--10--799899
Q ss_pred HHHHHHCCEECCCCCCCCCCCCHHHHHHHHC
Q ss_conf 8878865916467422334864135553210
Q gi|254780233|r 177 LYGSGRFGWMSDSSDGSRDQGMVPLLNLIVD 207 (624)
Q Consensus 177 ~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~ 207 (624)
+.+||++| .|++..|+.|++
T Consensus 138 ~~~SAktg-----------~gI~e~f~~L~e 157 (158)
T cd00878 138 QPCSAVTG-----------DGLDEGLDWLLQ 157 (158)
T ss_pred EEEECCCC-----------CCHHHHHHHHHC
T ss_conf 99988879-----------298999999956
No 123
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.50 E-value=7.4e-13 Score=103.60 Aligned_cols=153 Identities=20% Similarity=0.316 Sum_probs=95.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEEC-CEEEEEECCCCC-----CC
Q ss_conf 499985468987788999999839614232200000388577987096064679999989-979999728987-----54
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWN-DVRINIVDTPGH-----AD 94 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~-~~~iNiiDTPGH-----~D 94 (624)
||||||---+|||||.-+| +|.-. .+. |+ -|-|.......+.+. +.+|.|+||||. .+
T Consensus 2 ~VAiiG~pNvGKSTLlN~l---~~~~~---~V~----~~------pgTT~~~~~g~i~~~~~~~i~~~DtpGi~~~~~~~ 65 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAI---SNAKP---KIA----DY------PFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEG 65 (170)
T ss_pred CEEEECCCCCCHHHHHHHH---HCCCC---EEE----CC------CCCCCCCEEEEEEECCCCEEEEECCCCCCCCCCCC
T ss_conf 5899899999899999999---67876---032----56------66523744779993698569996488644455466
Q ss_pred CH--HHHHHHHHHHCEEEEEEECCCCCCH--HHHHHHHHHHH------CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 07--9999998742178999976878864--78999999997------29978999975436674025689999988862
Q gi|254780233|r 95 FG--GEVERILCMVESVVVLVDAAEGPMP--QTKFVVGKALK------IGLRPIVVVNKVDRSDARADEVINEVFDLFSA 164 (624)
Q Consensus 95 F~--gEVer~l~~~DgaiLvVdA~eGv~~--QT~~vl~~A~~------~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~ 164 (624)
++ -+.-|.+.-+|.+++||||...-.+ |.+.++. -++ .+.|.|+++||+|..+. ++......+++..
T Consensus 66 ~~l~~~~l~~i~~advil~vvD~~~~~~~~~~~~~i~~-~l~~~~~~~~~kp~ilv~NK~Dl~~~--~~~~~~~~~~~~~ 142 (170)
T cd01898 66 KGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRN-ELELYNPELLEKPRIVVLNKIDLLDE--EELFELLKELLKE 142 (170)
T ss_pred CCHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHH-HHHHHCHHHHCCCCEEEEEHHHCCCH--HHHHHHHHHHHHH
T ss_conf 22489998613345617999989987898999999999-99982744403865067762024283--5638999999985
Q ss_pred CCCCHHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 267301104266887886591646742233486413555321024
Q gi|254780233|r 165 LDATDAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 165 l~a~de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
....|+++.||++| .|++.|++.|.+.+
T Consensus 143 ------~~~~~vi~iSA~~g-----------~gi~~L~~~I~~~L 170 (170)
T cd01898 143 ------LWGKPVFPISALTG-----------EGLDELLRKLAELL 170 (170)
T ss_pred ------CCCCCEEEEECCCC-----------CCHHHHHHHHHHHC
T ss_conf ------69995899975479-----------79999999999669
No 124
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.50 E-value=7.3e-13 Score=103.64 Aligned_cols=152 Identities=22% Similarity=0.190 Sum_probs=95.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCH----
Q ss_conf 4999854689877889999998396142322000003885779870960646799999899799997289875407----
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFG---- 96 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~---- 96 (624)
-|||+|---+|||||.-+| +|.-. .+. ++ -|-|-......+.|++.++.|+||||..+..
T Consensus 2 ~VaivG~pNvGKStL~N~L---~g~~~---~v~----~~------p~TTr~~~~~~~~~~~~~~~liDTpGi~~~~~~~~ 65 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKL---TRAKP---EVA----PY------PFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEER 65 (168)
T ss_pred EEEEECCCCCCHHHHHHHH---HCCCC---EEC----CC------CCCCCCCEEEEEEECCCEEEEECCCCCCCCCHHHH
T ss_conf 7999889998899999999---58986---023----75------87235743689998372768724886556747888
Q ss_pred HHHHH----HH-HHHCEEEEEEECCCCCCH--HH-HHHHHHHHH--CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 99999----98-742178999976878864--78-999999997--2997899997543667402568999998886226
Q gi|254780233|r 97 GEVER----IL-CMVESVVVLVDAAEGPMP--QT-KFVVGKALK--IGLRPIVVVNKVDRSDARADEVINEVFDLFSALD 166 (624)
Q Consensus 97 gEVer----~l-~~~DgaiLvVdA~eGv~~--QT-~~vl~~A~~--~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~ 166 (624)
..+++ ++ ...|.+++|+|+.+...- .. ...++.-.+ .+.|.|+++||+|..+.. + +.+..++. +.
T Consensus 66 ~~ie~~~~~~l~~~~d~il~viD~~~~~~~~~~~~~~l~~~i~~~~~~~p~i~v~NK~Dl~~~~--~-~~~~~~~~-~~- 140 (168)
T cd01897 66 NTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFE--D-LSEIEEEE-EL- 140 (168)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC--C-HHHHHHHH-HC-
T ss_conf 8999999999983577689999688767848999999999877652588879999475345810--0-79999999-70-
Q ss_pred CCHHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 7301104266887886591646742233486413555321024
Q gi|254780233|r 167 ATDAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 167 a~de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
...|+++.||++| .|++.|+++|.+.+
T Consensus 141 -----~~~~vi~ISA~~g-----------~Gi~~L~~~i~ell 167 (168)
T cd01897 141 -----EGEEVLKISTLTE-----------EGVDEVKNKACELL 167 (168)
T ss_pred -----CCCCEEEEECCCC-----------CCHHHHHHHHHHHC
T ss_conf -----8998899981589-----------69999999999963
No 125
>PRK04213 GTP-binding protein; Provisional
Probab=99.48 E-value=1.2e-12 Score=102.17 Aligned_cols=161 Identities=27% Similarity=0.361 Sum_probs=101.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCC------
Q ss_conf 49998546898778899999983961423220000038857798709606467999998997999972898754------
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHAD------ 94 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~D------ 94 (624)
-|||+|.--.|||||..+|+ |. .-.+.+ .-|.|-. ...+.|++ +-++||||+-.
T Consensus 3 ~VaivGRpNVGKSTL~N~L~---g~---k~~vs~----------~pg~Tr~--~~~~~~~~--~~~vDtPG~g~~~~~~~ 62 (195)
T PRK04213 3 EIIFVGRSNVGKSTLIRALT---GK---KVRVGK----------RPGVTLK--PNEYDWGD--FILVDLPGFGFMSGVPK 62 (195)
T ss_pred EEEEECCCCCCHHHHHHHHH---CC---CCCCCC----------CCCEEEE--EEEEECCC--EEEEECCCCCCCCCCCH
T ss_conf 79997699988999999996---89---851348----------9964873--45885088--99999999622245888
Q ss_pred -C----HHHH----HHHHHHHCEEEEEEECCCCC-----------CHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHH
Q ss_conf -0----7999----99987421789999768788-----------64789999999972997899997543667402568
Q gi|254780233|r 95 -F----GGEV----ERILCMVESVVVLVDAAEGP-----------MPQTKFVVGKALKIGLRPIVVVNKVDRSDARADEV 154 (624)
Q Consensus 95 -F----~gEV----er~l~~~DgaiLvVdA~eGv-----------~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v 154 (624)
. .... +..++.+|.+++||||..++ .++-..++.+..+.+.|.|+++||+|+-. +-++.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvD~~~~~~~~dr~~~~~~~~~D~~i~~~l~~~~~p~ilv~NKiD~i~-~~~~~ 141 (195)
T PRK04213 63 KVQERIKDEIVHYIEDNADRIAAAVLVVDGKSFPEIIERWESRGEIPIDVEMFDFLRELGINPIVAVNKMDKIK-NSEEV 141 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECHHHCC-CHHHH
T ss_conf 89999999999999998851789999995786544211234456777789999999874998799998733058-77888
Q ss_pred HHHHHHHHHHCCCCHHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCCCCCC
Q ss_conf 9999988862267301104266887886591646742233486413555321024542233
Q gi|254780233|r 155 INEVFDLFSALDATDAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPPVIS 215 (624)
Q Consensus 155 ~~ei~dlf~~l~a~de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~P~~~ 215 (624)
++++.+.+ .+...-....-.+++.||+. .|++.|++.|.+++|.-..+
T Consensus 142 l~~i~e~~-~~~~~~~~~~~~iv~iSakk------------~Gid~L~~~I~~~L~E~~~~ 189 (195)
T PRK04213 142 LDEIAERL-GLYPPWRQWLDIIAPISAKK------------GGIEALKGLINKRLREFKRD 189 (195)
T ss_pred HHHHHHHH-HCCCCHHHCCCEEEEEECCC------------CCHHHHHHHHHHHCHHHCCC
T ss_conf 99999998-25761565698799984577------------99999999999967553741
No 126
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.48 E-value=5.2e-13 Score=104.64 Aligned_cols=147 Identities=27% Similarity=0.428 Sum_probs=95.5
Q ss_pred EECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCH---HH--
Q ss_conf 9854689877889999998396142322000003885779870960646799999899799997289875407---99--
Q gi|254780233|r 24 IIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFG---GE-- 98 (624)
Q Consensus 24 IiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~---gE-- 98 (624)
|+|.--.|||||..+|+ |. ...+. | .-|.|.......+.|++..+-|+||||..++. -+
T Consensus 1 ivG~pNvGKSTL~N~L~---g~---~~~vs----~------~pgtTrd~~~~~~~~~~~~~~lvDtpGi~~~~~~~~~e~ 64 (158)
T cd01879 1 LVGNPNVGKTTLFNALT---GA---RQKVG----N------WPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEK 64 (158)
T ss_pred CCCCCCCCHHHHHHHHH---CC---CCEEC----C------CCCCEEEEEEEEEEECCEEEEEEECCCCCCCCCCCHHHH
T ss_conf 97989888999999995---99---86461----7------898276347889962993799997987412564135678
Q ss_pred HHHHH---HHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHH-HHHHHHHHHHCCCCHHHCCH
Q ss_conf 99998---742178999976878864789999999972997899997543667402568-99999888622673011042
Q gi|254780233|r 99 VERIL---CMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDARADEV-INEVFDLFSALDATDAQLDF 174 (624)
Q Consensus 99 Ver~l---~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v-~~ei~dlf~~l~a~de~ld~ 174 (624)
+.+.. .-+|.+++|+||.+ +. +....+....+.+.|.|+++||+|......... .+++. +.+.+
T Consensus 65 i~~~~~~~~~~d~vl~vvD~~~-~~-~~l~~~~~l~~~~~p~ivV~NK~D~~~~~~~~~~~~~l~----------~~~~~ 132 (158)
T cd01879 65 VARDFLLGEKPDLIVNVVDATN-LE-RNLYLTLQLLELGLPVVVALNMIDEAEKRGIKIDLDKLS----------ELLGV 132 (158)
T ss_pred HHHHHHHHCCCCCEEEEEECCH-HH-HHHHHHHHHHHCCCCEEEEEEHHHHHHHCCCHHHHHHHH----------HHCCC
T ss_conf 9999998517871799977740-67-768999999865998899940277655225466799999----------87199
Q ss_pred HHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 66887886591646742233486413555321024
Q gi|254780233|r 175 PILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 175 Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
|+++.||++| .|++.|++.|.+.+
T Consensus 133 ~ii~iSA~~g-----------~Gi~~L~~~i~el~ 156 (158)
T cd01879 133 PVVPTSARKG-----------EGIDELKDAIAELA 156 (158)
T ss_pred CEEEEECCCC-----------CCHHHHHHHHHHHH
T ss_conf 4899987789-----------79999999999986
No 127
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=99.46 E-value=8.9e-14 Score=109.64 Aligned_cols=85 Identities=32% Similarity=0.449 Sum_probs=71.4
Q ss_pred CCCCCCCCCC-CCCEEEEEEECCCCCCCCCEEEEECCC-----CCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0111101367-773499999607805159889996057-----8501211455301103665344411254554322223
Q gi|254780233|r 221 MIGTILEKDP-FLGRIVTGRIHSGTIKSNQNIKALSPD-----GALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSIAGL 294 (624)
Q Consensus 221 ~~V~~i~~d~-y~Gria~gRV~sGtlk~Gd~V~vl~~~-----g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIvaIaGl 294 (624)
+.|+|...++ .-+.++++||+||+|++||+|+++.++ .+.....+|.+||.++|.++.+++++.|||||+|.||
T Consensus 3 ~~v~k~~~~~d~~~fia~gRV~SGtl~~G~~V~vlgp~y~~~~~~~~~~~~I~~l~~~~G~~~~~v~~~~AGnIv~i~Gl 82 (93)
T cd03700 3 MYVTKMVPTPDKGGFIAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGNIVLIVGL 82 (93)
T ss_pred EEEEEEEECCCCCEEEEEEEEEECEEECCCEEEEECCCCCCCCCCEEEEEEEEEEEEEECCCEEECCEECCCCEEEEECC
T ss_conf 99997165699978999999986668089999997887888877613388986999995688999098889999999776
Q ss_pred CCCCCCCEECC
Q ss_conf 32101221105
Q gi|254780233|r 295 VKATVADTFCD 305 (624)
Q Consensus 295 ~~~~iGDTL~~ 305 (624)
+++.+|+|.+.
T Consensus 83 d~~~~g~~~t~ 93 (93)
T cd03700 83 DQLKSGTTATI 93 (93)
T ss_pred CCCEEEEEEEC
T ss_conf 54437759839
No 128
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.44 E-value=1.3e-12 Score=102.07 Aligned_cols=152 Identities=22% Similarity=0.263 Sum_probs=92.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEE-CCEEEEEECCCC-CCCC
Q ss_conf 43149998546898778899999983961423220000038857798709606467999998-997999972898-7540
Q gi|254780233|r 18 QIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVW-NDVRINIVDTPG-HADF 95 (624)
Q Consensus 18 ~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~-~~~~iNiiDTPG-H~DF 95 (624)
.+--|||+|.-.+|||||..+|. |.- -.+.+ +- |.|.-...-.+.+ ++..|.++|||| ..|.
T Consensus 40 g~p~VaivG~PNvGKSTLlN~L~---g~~---~~v~~----~~------~tT~d~~~~~i~~~~~~~i~l~DT~G~i~~~ 103 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALT---GAD---VYAED----QL------FATLDPTTRRLRLPDGREVLLTDTVGFIRDL 103 (204)
T ss_pred CCCEEEEECCCCCCHHHHHHHHH---CCC---CEEEC----CC------CCCCCCEEEEEEECCCCEEEEEECCCCCCCC
T ss_conf 99879998899998999999994---899---63415----67------7645763668995699779998368644678
Q ss_pred HHH-HH---H---HHHHHCEEEEEEECCCCCC-HHHH---HHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 799-99---9---9874217899997687886-4789---9999999729978999975436674025689999988862
Q gi|254780233|r 96 GGE-VE---R---ILCMVESVVVLVDAAEGPM-PQTK---FVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLFSA 164 (624)
Q Consensus 96 ~gE-Ve---r---~l~~~DgaiLvVdA~eGv~-~QT~---~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~ 164 (624)
..+ ++ + .+.-+|.+|+||||.+... .|.. .++++....+.|.|+++||+|..+.. +.. ..+..
T Consensus 104 p~~lie~~~~tle~i~~AD~il~vvD~s~~~~~~~~~~~~~~l~~l~~~~k~~i~V~NKiDl~~~~--~~~----~~~~~ 177 (204)
T cd01878 104 PHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDE--ELE----ERLEA 177 (204)
T ss_pred CHHHHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCH--HHH----HHHHH
T ss_conf 378999999999999739899999979985366779999999998065557607888670479957--589----99970
Q ss_pred CCCCHHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 267301104266887886591646742233486413555321024
Q gi|254780233|r 165 LDATDAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 165 l~a~de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
...++++.||++| .|++.|.++|.+.+
T Consensus 178 -------~~~~~i~ISA~~g-----------~Gid~L~~~I~e~L 204 (204)
T cd01878 178 -------GRPDAVFISAKTG-----------EGLDELLEAIEELL 204 (204)
T ss_pred -------CCCCEEEEECCCC-----------CCHHHHHHHHHHHC
T ss_conf -------8998799988689-----------49999999999559
No 129
>KOG1143 consensus
Probab=99.43 E-value=2.6e-12 Score=100.09 Aligned_cols=283 Identities=21% Similarity=0.284 Sum_probs=172.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEE-CCCCHHHHHCCCEEEE--EEE-------EEEE--------
Q ss_conf 431499985468987788999999839614232200000-3885779870960646--799-------9998--------
Q gi|254780233|r 18 QIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERV-MDCNDLEKERGITILA--KVT-------SIVW-------- 79 (624)
Q Consensus 18 ~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~v-mD~~~~EreRGITI~a--~~~-------~~~~-------- 79 (624)
.+| +|++|-+|.||+||..-|-. |.. ++|....|. |=.++-|..-|-|-.- ... -+.|
T Consensus 167 evR-vAVlGg~D~GKSTLlGVLTQ--geL-DnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEE 242 (591)
T KOG1143 167 EVR-VAVLGGCDVGKSTLLGVLTQ--GEL-DNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEE 242 (591)
T ss_pred EEE-EEEECCCCCCCCEEEEEEEC--CCC-CCCCCEEEEEHHCCHHHHCCCCCCCCCHHCCCCCCCCCCCCHHHCCCHHH
T ss_conf 899-99852765672236655410--531-47887066301106365405763200101005365343002232045999
Q ss_pred ----CCEEEEEECCCCCCCCHHHHHHHHH--HHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCC-CHH
Q ss_conf ----9979999728987540799999987--421789999768788647899999999729978999975436674-025
Q gi|254780233|r 80 ----NDVRINIVDTPGHADFGGEVERILC--MVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDA-RAD 152 (624)
Q Consensus 80 ----~~~~iNiiDTPGH~DF~gEVer~l~--~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a-~~~ 152 (624)
..+.+++||--||+-+---..-+|. --+.|+|||+|..|+--.||.+|..+..+++|..|+|.|||.-+. -.+
T Consensus 243 i~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~Dl~~~~~~~ 322 (591)
T KOG1143 243 IVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKMDLVDRQGLK 322 (591)
T ss_pred HHHHHCCEEEEEECCCCHHHHEEEEEECCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCHHHH
T ss_conf 87410233887650442231304522003679862799998688876540888889997178769999840123632178
Q ss_pred HHHHHHHHHHHHCCCC---------HHH-------C---CHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCCCC
Q ss_conf 6899999888622673---------011-------0---42668878865916467422334864135553210245422
Q gi|254780233|r 153 EVINEVFDLFSALDAT---------DAQ-------L---DFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPPV 213 (624)
Q Consensus 153 ~v~~ei~dlf~~l~a~---------de~-------l---d~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~P~ 213 (624)
..+.++..|+...|.. |+. . -.|++..|...| .|+. ||...+..+|+-.
T Consensus 323 ~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsG-----------egl~-ll~~fLn~Lsp~~ 390 (591)
T KOG1143 323 KTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSG-----------EGLR-LLRTFLNCLSPAG 390 (591)
T ss_pred HHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHCCCCCEEEEEEEECCC-----------CCHH-HHHHHHHHCCCCC
T ss_conf 999999988742376326348505078878888753688114899850476-----------3266-9999986438767
Q ss_pred CC-------CCHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEC-CCCCCEEECCCCCEEEECCCCCCCCCCCCC
Q ss_conf 33-------2000001111013677734999996078051598899960-578501211455301103665344411254
Q gi|254780233|r 214 IS-------EGEFKMIGTILEKDPFLGRIVTGRIHSGTIKSNQNIKALS-PDGALVEVGRVSKILAFRGIDRQPIDEAHA 285 (624)
Q Consensus 214 ~~-------e~pl~~~V~~i~~d~y~Gria~gRV~sGtlk~Gd~V~vl~-~~g~~~~~~kV~~L~~~~G~~r~~v~ea~A 285 (624)
.. ..|...+|--+..-|.+|.+.-|-..+|.++.|+.+.+-. +||.-. ..+|..|.. +|.++-...|
T Consensus 391 ~~~e~~~L~q~~~eFqvdEiy~Vp~VG~VVGG~Ls~G~l~Eg~~~~vGP~~DG~F~-~itV~sI~R----nr~acrvvra 465 (591)
T KOG1143 391 TAEERIQLVQLPAEFQVDEIYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDGTFE-KITVGSIRR----NRQACRVVRA 465 (591)
T ss_pred CHHHHHHHHCCCCEEEHHHEECCCCCCCCCCCEEEECEECCCCEEEEECCCCCCEE-EEEEEEEEC----CCCCEEEECC
T ss_conf 72779998667622667470567765650311542232326860575047998346-788623641----6642026327
Q ss_pred CCCCCCC-CCCC---CCCCCEECCCCCCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 5543222-2332---10122110556521123366665421578612686
Q gi|254780233|r 286 GDIVSIA-GLVK---ATVADTFCDPSIDEPLKAQPIDPPTVTMTFGVNDS 331 (624)
Q Consensus 286 GDIvaIa-Gl~~---~~iGDTL~~~~~p~~Lp~i~i~~Ptis~~f~vn~s 331 (624)
|+-..++ +..| .+-|-.+..++. .|++...|.+|-+
T Consensus 466 GqaAslsl~d~D~~~LR~GMVl~~~~~----------nP~~c~~F~A~~~ 505 (591)
T KOG1143 466 GQAASLSLNDPDGVSLRRGMVLAEIDH----------NPPVCYEFTANLL 505 (591)
T ss_pred CCCEEEECCCCCCCCHHCCEEEEECCC----------CCCEEEEEEEEEH
T ss_conf 631155226887431103418963378----------9945799860002
No 130
>TIGR00231 small_GTP small GTP-binding protein domain; InterPro: IPR005225 Proteins with a small GTP-binding domain include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others . In some proteins the domain occurs more than once. Among them there is a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.; GO: 0005525 GTP binding.
Probab=99.42 E-value=3.4e-13 Score=105.84 Aligned_cols=135 Identities=28% Similarity=0.447 Sum_probs=110.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCC-CHHHHHCCCEEEEEEEEEEECCEEEEEECCCC---CC
Q ss_conf 431499985468987788999999839614232200000388-57798709606467999998997999972898---75
Q gi|254780233|r 18 QIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDC-NDLEKERGITILAKVTSIVWNDVRINIVDTPG---HA 93 (624)
Q Consensus 18 ~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~-~~~EreRGITI~a~~~~~~~~~~~iNiiDTPG---H~ 93 (624)
...+++++||.++|||||...++...+.......++....+. ....+.+|++|. ..+ +.| +++++++|||| |.
T Consensus 2 ~~~~~~~~g~~~~Gk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~-~~w-~~~~~~~d~~G~~~~~ 78 (186)
T TIGR00231 2 KDIKIGIVGDPNVGKSTLLNRLLGNKGSITESGPTDGTTRDYVTESIEEDGKTIT-GAT-FQW-GYKFNLLDTPGLHRQE 78 (186)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHCCCCEEECCCCCCCCHHHHEEEEEECCEEEE-EEE-EEC-CEEEEEEECCCCHHHH
T ss_conf 7505899734776604555445410120010232333200000011345580234-343-102-4278986257711355
Q ss_pred CC-------HHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHH
Q ss_conf 40-------799999987421789999768788647899999999729978999975436674025689
Q gi|254780233|r 94 DF-------GGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDARADEVI 155 (624)
Q Consensus 94 DF-------~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~ 155 (624)
+| .-++.+.+.++|.++++.++.+++++++..++..+...+.|.+++.||+|..+.+++.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 147 (186)
T TIGR00231 79 DYDALRRLYYPEVLSSLEVLDLVILVLDVEDGLEKDTKEIIHHADKYGVPILLVGNKIDLKDEKPGYFV 147 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEE
T ss_conf 554454332234454443333333222111001025677875322127416998513365546754010
No 131
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.42 E-value=3.5e-12 Score=99.20 Aligned_cols=154 Identities=22% Similarity=0.289 Sum_probs=104.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHH
Q ss_conf 43149998546898778899999983961423220000038857798709606467999998997999972898754079
Q gi|254780233|r 18 QIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGG 97 (624)
Q Consensus 18 ~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~g 97 (624)
+=-.|.++|--++|||||+.++.. +.+... .-|+......+.+++.++++.||+|+..|..
T Consensus 14 k~~KililG~~~sGKTsil~~l~~--~~~~~~-----------------~pT~G~~~~~i~~~~~~~~iwD~~G~e~~~~ 74 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLL--GEVVHT-----------------SPTIGSNVEEIVYKNIRFLMWDIGGQESLRS 74 (174)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHC--CCCCCC-----------------CCCCCCCEEEEEECCEEEEEEECCCCCCCCC
T ss_conf 779999998999988999999973--992771-----------------6723604699997888999998999865662
Q ss_pred HHHHHHHHHCEEEEEEECCCC-CCHHHHHHHHHHHH----CCCCEEEEEECCCCCCCCH-HHHHHHHHHHHHHCCCCHHH
Q ss_conf 999998742178999976878-86478999999997----2997899997543667402-56899999888622673011
Q gi|254780233|r 98 EVERILCMVESVVVLVDAAEG-PMPQTKFVVGKALK----IGLRPIVVVNKVDRSDARA-DEVINEVFDLFSALDATDAQ 171 (624)
Q Consensus 98 EVer~l~~~DgaiLvVdA~eG-v~~QT~~vl~~A~~----~~l~~IvvINKiDr~~a~~-~~v~~ei~dlf~~l~a~de~ 171 (624)
-...-.+-+|++|+|||+++- -....+..|...+. .+.|.+++.||.|.+++.. +++.++ ..+- . . ..
T Consensus 75 ~~~~y~~~a~~ii~VvD~sd~~~~~~~~~~l~~~l~~~~~~~~pili~~NK~Dl~~~~~~~ei~~~-l~l~-~--~--~~ 148 (174)
T cd04153 75 SWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISES-LGLT-S--I--RD 148 (174)
T ss_pred HHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHHH-HHHH-H--H--HC
T ss_conf 267770577537999976788899999999999972610169828999955556557899999999-7477-7--6--35
Q ss_pred CCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHC
Q ss_conf 042668878865916467422334864135553210
Q gi|254780233|r 172 LDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVD 207 (624)
Q Consensus 172 ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~ 207 (624)
-++.+..+||++| .|+.+.|+.+..
T Consensus 149 ~~~~~~~~SAktG-----------~Gv~e~f~wLa~ 173 (174)
T cd04153 149 HTWHIQGCCALTG-----------EGLPEGLDWIAS 173 (174)
T ss_pred CCCEEEEEECCCC-----------CCHHHHHHHHHC
T ss_conf 9809999668589-----------198999999866
No 132
>COG1159 Era GTPase [General function prediction only]
Probab=99.42 E-value=6.5e-12 Score=97.41 Aligned_cols=160 Identities=28% Similarity=0.377 Sum_probs=105.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCC--CCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCC
Q ss_conf 2431499985468987788999999839614--23220000038857798709606467999998997999972898754
Q gi|254780233|r 17 MQIRNIAIIAHVDHGKTTLVDELLKQSGVFR--DNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHAD 94 (624)
Q Consensus 17 ~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~--~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~D 94 (624)
++--=|||||--..|||||+.+|+-+-=++- ..+..-.+ =||| +..++++|-++||||-.-
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~---------I~GI--------~t~~~~QiIfvDTPGih~ 66 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNR---------IRGI--------VTTDNAQIIFVDTPGIHK 66 (298)
T ss_pred CEEEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCHHHHH---------EEEE--------EECCCCEEEEEECCCCCC
T ss_conf 36899999869987689999898568257515985311442---------1479--------986984499984898887
Q ss_pred C--------HHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 0--------79999998742178999976878864789999999972997899997543667402568999998886226
Q gi|254780233|r 95 F--------GGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLFSALD 166 (624)
Q Consensus 95 F--------~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~ 166 (624)
= .-++..++.-||.+++||||.++.-+.-++++.+-...+.|.|++|||+|+-... .++.++.+.+....
T Consensus 67 pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~--~~l~~~~~~~~~~~ 144 (298)
T COG1159 67 PKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPK--TVLLKLIAFLKKLL 144 (298)
T ss_pred CCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCH--HHHHHHHHHHHHHC
T ss_conf 6517889999999987245759999986665689107999997764389869999840257847--78999999998508
Q ss_pred CCHHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf 730110426688788659164674223348641355532102454
Q gi|254780233|r 167 ATDAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPP 211 (624)
Q Consensus 167 a~de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~ 211 (624)
... .+++.||++| .++..|++.|.+++|.
T Consensus 145 ~f~-----~ivpiSA~~g-----------~n~~~L~~~i~~~Lpe 173 (298)
T COG1159 145 PFK-----EIVPISALKG-----------DNVDTLLEIIKEYLPE 173 (298)
T ss_pred CCC-----EEEEEECCCC-----------CCHHHHHHHHHHHCCC
T ss_conf 830-----1799510156-----------7889999999985888
No 133
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.42 E-value=4.7e-12 Score=98.36 Aligned_cols=153 Identities=18% Similarity=0.225 Sum_probs=100.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHH
Q ss_conf 14999854689877889999998396142322000003885779870960646799999899799997289875407999
Q gi|254780233|r 20 RNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEV 99 (624)
Q Consensus 20 RNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEV 99 (624)
-+|.++|.-++|||||+.+|. .+.... + -.|+......+.+++.++++.||+|+.-|..-.
T Consensus 10 ~kililG~~~sGKTsil~~l~--~~~~~~----------~-------~pTvg~~~~~~~~~~~~l~iwD~~Gqe~~r~l~ 70 (168)
T cd04149 10 MRILMLGLDAAGKTTILYKLK--LGQSVT----------T-------IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLW 70 (168)
T ss_pred EEEEEECCCCCCHHHHHHHHH--CCCCCC----------C-------CCCCCCEEEEEEECCEEEEEEECCCCCCCCCHH
T ss_conf 899999999999899999996--699876----------0-------262670079999898899999899997466065
Q ss_pred HHHHHHHCEEEEEEECCCCC-CHHHHHHHHHHH----HCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCH
Q ss_conf 99987421789999768788-647899999999----7299789999754366740256899999888622673011042
Q gi|254780233|r 100 ERILCMVESVVVLVDAAEGP-MPQTKFVVGKAL----KIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDF 174 (624)
Q Consensus 100 er~l~~~DgaiLvVdA~eGv-~~QT~~vl~~A~----~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~ 174 (624)
..-.+-++|+++|||+++-- ..+.+..+...+ -.++|.+++.||.|.+++...+-+.+.+++- .+ . .-.+
T Consensus 71 ~~y~~~~~~iifVvDstd~~~~~~~~~~l~~~l~~~~~~~~pilI~~NK~Dl~~~~~~~ei~~~l~l~-~~--~--~~~~ 145 (168)
T cd04149 71 RHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLT-RI--R--DRNW 145 (168)
T ss_pred HHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCHH-HH--H--CCCC
T ss_conf 76437886689998377678999999999999714522798699999756677788999999997876-55--1--7980
Q ss_pred HHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHC
Q ss_conf 668878865916467422334864135553210
Q gi|254780233|r 175 PILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVD 207 (624)
Q Consensus 175 Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~ 207 (624)
.+..+||++| .|+.+.|+.|.+
T Consensus 146 ~i~~~SA~tG-----------~Gv~e~f~WL~~ 167 (168)
T cd04149 146 YVQPSCATSG-----------DGLYEGLTWLSS 167 (168)
T ss_pred EEEEEECCCC-----------CCHHHHHHHHHC
T ss_conf 9998068789-----------697999999865
No 134
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.41 E-value=1.4e-12 Score=101.71 Aligned_cols=155 Identities=26% Similarity=0.377 Sum_probs=109.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCH
Q ss_conf 24314999854689877889999998396142322000003885779870960646799999899799997289875407
Q gi|254780233|r 17 MQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFG 96 (624)
Q Consensus 17 ~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~ 96 (624)
++| +||++|.-..|||||-.+| ||. +++|.+. -|.|+--|.-.+.|+++++.++|.||--+..
T Consensus 2 k~i-~IALvGNPN~GKSTLFN~L---TG~---~q~VgNw----------PGvTVEkk~G~~~~~~~~~~ivDLPG~YSL~ 64 (772)
T PRK09554 2 KKL-TIGLIGNPNSGKTTLFNQL---TGA---RQRVGNW----------AGVTVERKEGQFSTTDHQVTLVDLPGTYSLT 64 (772)
T ss_pred CCC-EEEEECCCCCCHHHHHHHH---HCC---CCEEECC----------CCCEEEEEEEEEEECCCEEEEEECCCCCCCC
T ss_conf 735-6998889987899999998---689---9835789----------9764742389999689469999799778699
Q ss_pred H---H---HHHHH------HHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9---9---99998------7421789999768788647899999999729978999975436674025689999988862
Q gi|254780233|r 97 G---E---VERIL------CMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLFSA 164 (624)
Q Consensus 97 g---E---Ver~l------~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~ 164 (624)
. | -|++. .-.|.++.||||+.= ...-+...+.+++|+|.|+++|+||.-..+-.+ ++
T Consensus 65 ~~S~e~s~dE~Var~~ll~~~pDvvvnVvDAtnL--eRnLyLt~QllElg~PvVvaLNM~D~A~~~Gi~---------ID 133 (772)
T PRK09554 65 TISSQTSLDEQIACHYILSGDADLLINVVDASNL--ERNLYLTLQLLELGIPCIVALNMLDIAEKQNIR---------ID 133 (772)
T ss_pred CCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCH--HHHHHHHHHHHHCCCCEEEEEECHHHHHHCCCE---------EC
T ss_conf 9997777308999998613999899998016875--442899999997499989998779989887793---------28
Q ss_pred CCCCHHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 2673011042668878865916467422334864135553210245
Q gi|254780233|r 165 LDATDAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVP 210 (624)
Q Consensus 165 l~a~de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP 210 (624)
..+-.+.|..||++.||+.| +|++.|.++|.++.+
T Consensus 134 ~~~Ls~~LGvPVV~~~A~~g-----------~Gi~eL~~ai~~~~~ 168 (772)
T PRK09554 134 IDALSARLGCPVIPLVSTRG-----------RGIEALKLAIDRYKA 168 (772)
T ss_pred HHHHHHHHCCCEEEEEECCC-----------CCHHHHHHHHHHHHC
T ss_conf 99999985899899982788-----------799999999997522
No 135
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.41 E-value=5.3e-12 Score=98.01 Aligned_cols=154 Identities=18% Similarity=0.267 Sum_probs=100.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHH
Q ss_conf 49998546898778899999983961423220000038857798709606467999998997999972898754079999
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVE 100 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVe 100 (624)
||.++|.-++|||||..+|.... +. ...+ .-|+-.....+.+++.++++.|++|+..|..-..
T Consensus 1 ~Il~lGl~~sGKTtil~~l~~~~--~~-~~~~--------------~pT~G~~~~~~~~~~~~~~iwD~~G~~~~r~lw~ 63 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPEN--AQ-SQII--------------VPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWE 63 (162)
T ss_pred CEEEECCCCCCHHHHHHHHHCCC--CC-CCCC--------------CCCCCEEEEEEEECCEEEEEEECCCCCCCCHHHH
T ss_conf 99999999998899999997289--87-5641--------------6850757899983998899998588744205589
Q ss_pred HHHHHHCEEEEEEECCCCC-CHHHHHHHHHHHH------CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCC
Q ss_conf 9987421789999768788-6478999999997------29978999975436674025689999988862267301104
Q gi|254780233|r 101 RILCMVESVVVLVDAAEGP-MPQTKFVVGKALK------IGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLD 173 (624)
Q Consensus 101 r~l~~~DgaiLvVdA~eGv-~~QT~~vl~~A~~------~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld 173 (624)
.-.+-+|++++|||+.+=- +...+..+...++ .++|.+++.||+|.+++-..+-+.+.+++ ..+.. -.
T Consensus 64 ~y~~~~~~iI~VvDssd~~~~~~~~~~l~~ll~~~~~~~~~~PiLI~~NK~D~~~~~~~~ei~~~l~l-~~~~~----~~ 138 (162)
T cd04157 64 HYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGL-ENIKD----KP 138 (162)
T ss_pred HHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHCH-HHHCC----CC
T ss_conf 87056744899970763888999999999997176551798459999814778899999999988586-65248----96
Q ss_pred HHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHC
Q ss_conf 2668878865916467422334864135553210
Q gi|254780233|r 174 FPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVD 207 (624)
Q Consensus 174 ~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~ 207 (624)
+.++.+||++| .|+++-|+-+.+
T Consensus 139 ~~i~~~SA~tG-----------~Gi~e~f~WL~~ 161 (162)
T cd04157 139 WHIFASNALTG-----------EGLDEGVQWLQA 161 (162)
T ss_pred EEEEEEECCCC-----------CCHHHHHHHHHC
T ss_conf 49999789789-----------798999999865
No 136
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.40 E-value=4.8e-12 Score=98.30 Aligned_cols=152 Identities=26% Similarity=0.311 Sum_probs=101.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHHH
Q ss_conf 99985468987788999999839614232200000388577987096064679999989979999728987540799999
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVER 101 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVer 101 (624)
|+++|--++|||||+-++.. +.+... +. -||-...-.+.+++..+.+.||||+..|..-...
T Consensus 2 I~llG~~~~GKTsll~~~~~--~~f~~~---------~~-------pTig~~~~~i~~~~~~l~iwDt~G~e~~~~l~~~ 63 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAG--GQFSED---------TI-------PTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWER 63 (159)
T ss_pred EEEECCCCCCHHHHHHHHHC--CCCCCC---------CC-------CCCCEEEEEEEECCEEEEEEECCCHHHHHHHHHH
T ss_conf 89999999869999999975--999886---------16-------7325058999989999999979835877999998
Q ss_pred HHHHHCEEEEEEECCCCCCHH-HHHHHHHH----HHCCCCEEEEEECCCCCCCC-HHHHHHHHHHHHHHCCCCHHHCCHH
Q ss_conf 987421789999768788647-89999999----97299789999754366740-2568999998886226730110426
Q gi|254780233|r 102 ILCMVESVVVLVDAAEGPMPQ-TKFVVGKA----LKIGLRPIVVVNKVDRSDAR-ADEVINEVFDLFSALDATDAQLDFP 175 (624)
Q Consensus 102 ~l~~~DgaiLvVdA~eGv~~Q-T~~vl~~A----~~~~l~~IvvINKiDr~~a~-~~~v~~ei~dlf~~l~a~de~ld~P 175 (624)
-.+-+|++++|+|+.+--.-+ -+..|... ...++|.+++.||+|.+++. .+++.++. ++.. +.+ ..++
T Consensus 64 y~~~~~~ii~V~D~sd~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~-~~~~---~~~--~~~~ 137 (159)
T cd04159 64 YCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQM-NLKS---ITD--REVS 137 (159)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHH-HHHH---HHC--CCCE
T ss_conf 746863687515778788999999999999854434898289888356764347899999999-9998---734--9987
Q ss_pred HHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 688788659164674223348641355532102
Q gi|254780233|r 176 ILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDH 208 (624)
Q Consensus 176 v~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~ 208 (624)
++.+||++| .|++.+|+.++++
T Consensus 138 ~~~~SAktg-----------~gI~e~f~wL~~~ 159 (159)
T cd04159 138 CYSISCKEK-----------TNIDIVLDWLIKH 159 (159)
T ss_pred EEEEECCCC-----------CCHHHHHHHHHCC
T ss_conf 999979689-----------6989999999659
No 137
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.39 E-value=6.4e-12 Score=97.48 Aligned_cols=153 Identities=17% Similarity=0.240 Sum_probs=101.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHH
Q ss_conf 49998546898778899999983961423220000038857798709606467999998997999972898754079999
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVE 100 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVe 100 (624)
.|.++|--++|||||+.++. .|.+.. . --|+......+.+++.++++.|++|+.-|..=..
T Consensus 2 KililG~~~sGKTsll~~l~--~~~~~~----------~-------~pT~g~~~~~~~~~~~~l~iwD~~G~~~~r~l~~ 62 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLK--LGEIVT----------T-------IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWR 62 (159)
T ss_pred EEEEECCCCCCHHHHHHHHH--CCCCCC----------C-------CCCCCCCEEEEEECCEEEEEEECCCCCCCCHHHH
T ss_conf 99999999999899999997--299677----------5-------8968701799998989999997899721465678
Q ss_pred HHHHHHCEEEEEEECCCCC-CHHHHHHHHHHHH----CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHH
Q ss_conf 9987421789999768788-6478999999997----2997899997543667402568999998886226730110426
Q gi|254780233|r 101 RILCMVESVVVLVDAAEGP-MPQTKFVVGKALK----IGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFP 175 (624)
Q Consensus 101 r~l~~~DgaiLvVdA~eGv-~~QT~~vl~~A~~----~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~P 175 (624)
.-.+-++|+++|||+++-- ....+..|...+. .++|.+++.||.|++++...+-+.+.+.+. .+. + ..+-
T Consensus 63 ~Y~~~a~~iI~VvD~sd~~~~~~~~~~l~~~l~~~~~~~~pili~~NK~Dl~~~~~~~ei~~~l~l~-~~~--~--~~~~ 137 (159)
T cd04150 63 HYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLH-SLR--N--RNWY 137 (159)
T ss_pred HHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCHH-HHH--C--CCEE
T ss_conf 6476873899999777778999999999999623533698299999756677898999999996866-663--7--9859
Q ss_pred HHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 688788659164674223348641355532102
Q gi|254780233|r 176 ILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDH 208 (624)
Q Consensus 176 v~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~ 208 (624)
+..+||++| .|+...|+.+.++
T Consensus 138 i~~~SA~tG-----------~Gv~e~f~WL~~~ 159 (159)
T cd04150 138 IQATCATSG-----------DGLYEGLDWLSNN 159 (159)
T ss_pred EEEEECCCC-----------CCHHHHHHHHHCC
T ss_conf 998268679-----------3989999998559
No 138
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.39 E-value=8.7e-12 Score=96.59 Aligned_cols=151 Identities=21% Similarity=0.238 Sum_probs=99.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHHH
Q ss_conf 99985468987788999999839614232200000388577987096064679999989979999728987540799999
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVER 101 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVer 101 (624)
|.++|--++|||||+.++. .|.+.. +. -||......+.+++.+++|.||+||..|..-...
T Consensus 2 il~lG~~~~GKTsll~~~~--~~~~~~----------~~-------pTig~~~~~i~~~~~~~~iwD~~G~e~~r~~~~~ 62 (158)
T cd04151 2 ILILGLDNAGKTTILYRLQ--LGEVVT----------TI-------PTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRC 62 (158)
T ss_pred EEEECCCCCCHHHHHHHHH--CCCCCC----------CC-------CCCCCCEEEEEECCEEEEEEECCCCCCCCHHHHH
T ss_conf 9999999998999999997--099677----------57-------8488246999989889999967986244627887
Q ss_pred HHHHHCEEEEEEECCCCCCHH-HHHHHHHH----HHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHH
Q ss_conf 987421789999768788647-89999999----9729978999975436674025689999988862267301104266
Q gi|254780233|r 102 ILCMVESVVVLVDAAEGPMPQ-TKFVVGKA----LKIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFPI 176 (624)
Q Consensus 102 ~l~~~DgaiLvVdA~eGv~~Q-T~~vl~~A----~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~Pv 176 (624)
-.+-+|++++|+|+.+=-.-+ -+.-|... .-.+.|.+++.||+|.+++...+.+.+...+- .+ . ...+++
T Consensus 63 y~~~~~~ii~VvD~sd~~~~~~~~~~l~~~l~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~-~~--~--~~~~~~ 137 (158)
T cd04151 63 YYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLS-EL--K--DRTWSI 137 (158)
T ss_pred HCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHH-HH--H--CCCCEE
T ss_conf 466788999997457878999999999999834653698199999766776577999999998598-74--1--699689
Q ss_pred HHHHHHCCEECCCCCCCCCCCCHHHHHHHHC
Q ss_conf 8878865916467422334864135553210
Q gi|254780233|r 177 LYGSGRFGWMSDSSDGSRDQGMVPLLNLIVD 207 (624)
Q Consensus 177 ~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~ 207 (624)
+.+||++| .|+.++|+.+++
T Consensus 138 ~~tSA~tG-----------~gV~e~f~wL~~ 157 (158)
T cd04151 138 FKTSAIKG-----------EGLDEGMDWLVN 157 (158)
T ss_pred EEEECCCC-----------CCHHHHHHHHHC
T ss_conf 99678789-----------399999999856
No 139
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.38 E-value=4.9e-12 Score=98.20 Aligned_cols=149 Identities=19% Similarity=0.213 Sum_probs=96.4
Q ss_pred EECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCC-EEEEEEEEEEE--CCEEEEEECCCCCCCCHHHHH
Q ss_conf 985468987788999999839614232200000388577987096-06467999998--997999972898754079999
Q gi|254780233|r 24 IIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGI-TILAKVTSIVW--NDVRINIVDTPGHADFGGEVE 100 (624)
Q Consensus 24 IiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGI-TI~a~~~~~~~--~~~~iNiiDTPGH~DF~gEVe 100 (624)
|+|+.++|||||+.+++...-. . .++.. ++......+.+ ..++++|+||||+.+|.....
T Consensus 1 vvG~~~~GKSsl~~~~~~~~~~--~---------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 63 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFV--P---------------EEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRR 63 (157)
T ss_pred CCCCCCCCHHHHHHHHHCCCCC--C---------------CCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHH
T ss_conf 9294996889999999719888--7---------------6468715789999999999999999998589511567899
Q ss_pred HHHHHHCEEEEEEECCCCCCHHHHHH-----HHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHH
Q ss_conf 99874217899997687886478999-----9999972997899997543667402568999998886226730110426
Q gi|254780233|r 101 RILCMVESVVVLVDAAEGPMPQTKFV-----VGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFP 175 (624)
Q Consensus 101 r~l~~~DgaiLvVdA~eGv~~QT~~v-----l~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~P 175 (624)
..++-+|++++|+|+.+--.-+...- +......+.|.+++.||.|.+..+......+...+. .....|
T Consensus 64 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~-------~~~~~~ 136 (157)
T cd00882 64 LYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLA-------KELGVP 136 (157)
T ss_pred HHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHCCCCCHHHHHHHHH-------HHCCCE
T ss_conf 9975357999998658888899999999999997525898499998535615406688999999999-------878986
Q ss_pred HHHHHHHCCEECCCCCCCCCCCCHHHHHHHHC
Q ss_conf 68878865916467422334864135553210
Q gi|254780233|r 176 ILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVD 207 (624)
Q Consensus 176 v~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~ 207 (624)
++++||++| .|+..||+.|++
T Consensus 137 ~~~~Sa~~~-----------~~i~~l~~~i~~ 157 (157)
T cd00882 137 YFETSAKTG-----------ENVEELFEELAE 157 (157)
T ss_pred EEEECCCCC-----------CCHHHHHHHHHC
T ss_conf 999847888-----------399999999859
No 140
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.37 E-value=8.3e-12 Score=96.72 Aligned_cols=158 Identities=18% Similarity=0.217 Sum_probs=104.2
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCC
Q ss_conf 02431499985468987788999999839614232200000388577987096064679999989979999728987540
Q gi|254780233|r 16 YMQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADF 95 (624)
Q Consensus 16 ~~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF 95 (624)
..++ +|.++|--++|||||+.+|.. |.+.. . -.|+......+.+++.++++.||.|+.-|
T Consensus 15 kk~~-kililGl~~sGKTsil~~l~~--~~~~~------~-----------~pTvg~~~~~~~~~~~~l~iwD~~Gqe~~ 74 (182)
T PTZ00133 15 KKEV-RILMVGLDAAGKTTILYKLKL--GEVVT------T-----------IPTIGFNVETVEYKNLKFTMWDVGGQDKL 74 (182)
T ss_pred CCEE-EEEEECCCCCCHHHHHHHHHC--CCCCC------C-----------CCCCCCCEEEEEECCEEEEEEECCCCCCC
T ss_conf 8747-999996799889999999962--99777------3-----------78688456999978889999989998454
Q ss_pred HHHHHHHHHHHCEEEEEEECCCC-CCHHHHHHHHHHHH----CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHH
Q ss_conf 79999998742178999976878-86478999999997----29978999975436674025689999988862267301
Q gi|254780233|r 96 GGEVERILCMVESVVVLVDAAEG-PMPQTKFVVGKALK----IGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDA 170 (624)
Q Consensus 96 ~gEVer~l~~~DgaiLvVdA~eG-v~~QT~~vl~~A~~----~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de 170 (624)
-.-...-.+-+||+++|||+++- -..+.+..|...+. .+.|.+++.||.|.++|....-+.+...+- ...
T Consensus 75 r~lw~~yy~~~~giI~VvD~sd~~~~~~~~~~l~~~l~~~~~~~~piLi~~NK~Dl~~a~~~~ei~~~l~l~---~~~-- 149 (182)
T PTZ00133 75 RPLWRHYYQNTNGIIFVVDSNDRERIGDARQELEKMLAEDELRNAVLLVFANKQDLPNAMSTTEVTEKLGLH---SVR-- 149 (182)
T ss_pred CHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEECCCCCCCCCCHHHHHHHHCHH---HHH--
T ss_conf 747876056764499999667878999999999999714422488599997066877888999999996955---561--
Q ss_pred HCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 104266887886591646742233486413555321024
Q gi|254780233|r 171 QLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 171 ~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
+-.+.+.++||++| .|+.+.|+.+.+.+
T Consensus 150 ~~~~~i~~~SA~tG-----------~Gi~e~f~wL~~~i 177 (182)
T PTZ00133 150 QRNWYIQGCCATTA-----------QGLYEGLDWLSANI 177 (182)
T ss_pred CCCCEEEEEECCCC-----------CCHHHHHHHHHHHH
T ss_conf 59958998257589-----------49899999999999
No 141
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.36 E-value=1.7e-11 Score=94.67 Aligned_cols=158 Identities=19% Similarity=0.229 Sum_probs=103.6
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCC
Q ss_conf 02431499985468987788999999839614232200000388577987096064679999989979999728987540
Q gi|254780233|r 16 YMQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADF 95 (624)
Q Consensus 16 ~~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF 95 (624)
..++ .|.++|--++|||||+.+|.. |.+ ... -.|+......+.+++.++++.||.|+.-|
T Consensus 11 kk~~-kililG~~~~GKTsil~~l~~--~~~------~~~-----------~pTvg~~~~~~~~~~~~l~iwD~~Gqe~~ 70 (175)
T smart00177 11 NKEM-RILMVGLDAAGKTTILYKLKL--GES------VTT-----------IPTIGFNVETVTYKNISFTVWDVGGQDKI 70 (175)
T ss_pred CCEE-EEEEECCCCCCHHHHHHHHHC--CCC------CCC-----------CCCCCCEEEEEEECCEEEEEEECCCCCCC
T ss_conf 8889-999998899998999999965--997------775-----------79788107999989899999989998545
Q ss_pred HHHHHHHHHHHCEEEEEEECCCC-CCHHHHHHHHHHH----HCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHH
Q ss_conf 79999998742178999976878-8647899999999----729978999975436674025689999988862267301
Q gi|254780233|r 96 GGEVERILCMVESVVVLVDAAEG-PMPQTKFVVGKAL----KIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDA 170 (624)
Q Consensus 96 ~gEVer~l~~~DgaiLvVdA~eG-v~~QT~~vl~~A~----~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de 170 (624)
..-...-.+-+||+++|||+++- -..+.+..|...+ -.++|.+++.||.|.+++....-+.+...+.. ..+
T Consensus 71 r~l~~~Yy~~a~~iIfVvD~sd~~~~~~~~~~l~~~l~~~~~~~~piLil~NK~Dl~~~~~~~ei~~~l~l~~---~~~- 146 (175)
T smart00177 71 RPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHS---IRD- 146 (175)
T ss_pred CHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCHHH---HCC-
T ss_conf 5367775577618999986687789999999999996315316986999984566767889999999968665---407-
Q ss_pred HCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 104266887886591646742233486413555321024
Q gi|254780233|r 171 QLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 171 ~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
-.+-+.++||++| .|+.+.|+.|.+.+
T Consensus 147 -~~~~i~~~SA~tG-----------~GI~e~f~wL~~~i 173 (175)
T smart00177 147 -RNWYIQPTCATSG-----------DGLYEGLTWLSNNL 173 (175)
T ss_pred -CCEEEEEEECCCC-----------CCHHHHHHHHHHHH
T ss_conf -9759998268789-----------69899999999984
No 142
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.34 E-value=1.5e-11 Score=95.11 Aligned_cols=159 Identities=19% Similarity=0.263 Sum_probs=96.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEE-EECCEEEEEECCCCCCCCHHHH
Q ss_conf 499985468987788999999839614232200000388577987096064679999-9899799997289875407999
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSI-VWNDVRINIVDTPGHADFGGEV 99 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~-~~~~~~iNiiDTPGH~DF~gEV 99 (624)
+|.++|--.+|||||+.++. .+.+.. ... --|+......... ..++++++|.||.|+.-|..-.
T Consensus 5 kIvilG~~~~GKTsil~r~~--~~~f~~--~~p-----------TiG~~~~~~~~~~~~~~~v~l~iwDtaGqe~~r~l~ 69 (183)
T cd04152 5 HIVMLGLDSAGKTTVLYRLK--FNEFVN--TVP-----------TKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLW 69 (183)
T ss_pred EEEEECCCCCCHHHHHHHHH--CCCCCC--CCC-----------CCCEEEEEEEEECCCCCEEEEEEEECCCCCCCCEEH
T ss_conf 99999999998899999996--498677--687-----------035578999996167866799999789873451008
Q ss_pred HHHHHHHCEEEEEEECCCCC-CHHHHHHHHHHH----HCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCH
Q ss_conf 99987421789999768788-647899999999----7299789999754366740256899999888622673011042
Q gi|254780233|r 100 ERILCMVESVVVLVDAAEGP-MPQTKFVVGKAL----KIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDF 174 (624)
Q Consensus 100 er~l~~~DgaiLvVdA~eGv-~~QT~~vl~~A~----~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~ 174 (624)
..-.+-+||+++|+|+++=- ..+.+.-|...+ ..++|.+++-||.|.+++....-+.+...+ .++... -.+
T Consensus 70 ~~Y~r~a~g~i~V~D~td~~~~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~ei~~~l~l-~~~~~~---~~~ 145 (183)
T cd04152 70 KSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLAL-HELSAS---TPW 145 (183)
T ss_pred HHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHH-HHHHCC---CCC
T ss_conf 7674678678999967768899999999999973212379629999866777668788999999719-998666---998
Q ss_pred HHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 66887886591646742233486413555321024
Q gi|254780233|r 175 PILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 175 Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
.+..+||++| .|+...|+.+.+.+
T Consensus 146 ~i~~tSA~tG-----------~gI~e~f~~L~~~i 169 (183)
T cd04152 146 HVQPACAIIG-----------EGLQEGLEKLYEMI 169 (183)
T ss_pred EEEEEECCCC-----------CCHHHHHHHHHHHH
T ss_conf 9997279979-----------69899999999999
No 143
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.34 E-value=2.2e-11 Score=93.98 Aligned_cols=151 Identities=21% Similarity=0.260 Sum_probs=91.7
Q ss_pred EECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEEC-CEEEEEECCCCCCC-C------
Q ss_conf 985468987788999999839614232200000388577987096064679999989-97999972898754-0------
Q gi|254780233|r 24 IIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWN-DVRINIVDTPGHAD-F------ 95 (624)
Q Consensus 24 IiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~-~~~iNiiDTPGH~D-F------ 95 (624)
|||---+|||||..+| +|.-. .+. + .-|-|.....-.+.|+ +.++.++||||-.+ .
T Consensus 1 ivG~PNvGKSTL~N~L---t~~~~---~v~----~------~pgTTr~~~~g~~~~~~~~~i~~~DtpGi~~~~~~~~~~ 64 (176)
T cd01881 1 LVGLPNVGKSTLLNAL---TNAKP---KVA----N------YPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGL 64 (176)
T ss_pred CCCCCCCCHHHHHHHH---HCCCC---EEE----C------CCCCEEEEEEEEEEECCCCEEEEEECCCCCCCCHHHHHH
T ss_conf 9699988899999999---68996---030----7------899676124679994799669999578754573378789
Q ss_pred HHHHHHHHHHHCEEEEEEECCCCCCHHHHHHH------HH-----------HHHCCCCEEEEEECCCCCCCCHHHHHHHH
Q ss_conf 79999998742178999976878864789999------99-----------99729978999975436674025689999
Q gi|254780233|r 96 GGEVERILCMVESVVVLVDAAEGPMPQTKFVV------GK-----------ALKIGLRPIVVVNKVDRSDARADEVINEV 158 (624)
Q Consensus 96 ~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl------~~-----------A~~~~l~~IvvINKiDr~~a~~~~v~~ei 158 (624)
+....+.++-+|.+++|+||.+....+....+ .. ....+.|.++++||+|....+ +.....
T Consensus 65 ~~~~l~~~~~~d~il~vvD~~~~~~~~~~~~~~~~~~i~~el~~~~~~~~~~~~~~kp~i~v~NK~Dl~~~~--~~~~~~ 142 (176)
T cd01881 65 GNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAE--ELEEEL 142 (176)
T ss_pred HHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEEECEECCCHH--HHHHHH
T ss_conf 999998741088999999898765545445899999999999971156655543269719999686034700--315999
Q ss_pred HHHHHHCCCCHHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 988862267301104266887886591646742233486413555321024
Q gi|254780233|r 159 FDLFSALDATDAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 159 ~dlf~~l~a~de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
...+.. ....|+++.||++| .|+..|++.|.+.+
T Consensus 143 ~~~~~~------~~~~~ii~iSA~~~-----------~gi~~L~~~i~~~L 176 (176)
T cd01881 143 VRELAL------EEGAEVVPISAKTE-----------EGLDELIRAIYELL 176 (176)
T ss_pred HHHHHH------CCCCCEEEEECCCC-----------CCHHHHHHHHHHHC
T ss_conf 999974------68995899977788-----------79999999999659
No 144
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.32 E-value=4.6e-11 Score=91.82 Aligned_cols=151 Identities=18% Similarity=0.263 Sum_probs=100.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECC-EEEEEECCCCCCCCHHHHH
Q ss_conf 999854689877889999998396142322000003885779870960646799999899-7999972898754079999
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWND-VRINIVDTPGHADFGGEVE 100 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~-~~iNiiDTPGH~DF~gEVe 100 (624)
|.++|--++|||||+.++. .|.+... --||......+.+++ .++++.||.|...|..-..
T Consensus 2 ivilG~~~~GKTsil~r~~--~~~~~~~-----------------~pTig~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~ 62 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLK--HAELVTT-----------------IPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWK 62 (160)
T ss_pred EEEECCCCCCHHHHHHHHH--CCCCCCC-----------------CCCCCEEEEEEEECCEEEEEEEECCCCCCCCHHHH
T ss_conf 9999999999999999995--6987775-----------------77615038999989989999997898624741588
Q ss_pred HHHHHHCEEEEEEECCCCC-CHHHHHHHHHHHH----CCCCEEEEEECCCCCCCCH-HHHHHHHHHHHHHCCCCHHHCCH
Q ss_conf 9987421789999768788-6478999999997----2997899997543667402-56899999888622673011042
Q gi|254780233|r 101 RILCMVESVVVLVDAAEGP-MPQTKFVVGKALK----IGLRPIVVVNKVDRSDARA-DEVINEVFDLFSALDATDAQLDF 174 (624)
Q Consensus 101 r~l~~~DgaiLvVdA~eGv-~~QT~~vl~~A~~----~~l~~IvvINKiDr~~a~~-~~v~~ei~dlf~~l~a~de~ld~ 174 (624)
.-.+-+||+|+|+|+.+-- ..+.+.-|...++ .++|.+++.||.|.+++.. +++.++ .++ ... + ....+
T Consensus 63 ~y~~~a~~iI~V~D~td~~~~~~~~~~~~~~l~~~~~~~~pili~~NK~Dl~~~~~~~ei~~~-l~~-~~~-~--~~~~~ 137 (160)
T cd04156 63 CYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRR-FKL-KKY-C--SDRDW 137 (160)
T ss_pred HHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHH-HHH-HHH-H--HCCCC
T ss_conf 774567789999856867887879999999986635378749999986336566799999999-869-999-8--53999
Q ss_pred HHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHC
Q ss_conf 668878865916467422334864135553210
Q gi|254780233|r 175 PILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVD 207 (624)
Q Consensus 175 Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~ 207 (624)
++.++||++| .|+..+|+.|..
T Consensus 138 ~i~~~SAktG-----------egi~e~f~~la~ 159 (160)
T cd04156 138 YVQPCSAVTG-----------EGLAEAFRKLAS 159 (160)
T ss_pred EEEEEECCCC-----------CCHHHHHHHHHC
T ss_conf 9998668849-----------599999999857
No 145
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.28 E-value=6.9e-11 Score=90.70 Aligned_cols=154 Identities=20% Similarity=0.225 Sum_probs=101.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHHH
Q ss_conf 99985468987788999999839614232200000388577987096064679999989979999728987540799999
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVER 101 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVer 101 (624)
|.++|--++||||+..+|. .+.+.. .. -|+--....+.+++.++++.|+.|+.-|..=...
T Consensus 2 IlilGl~~sGKTtil~~l~--~~~~~~----------~~-------pT~G~~~~~i~~~~~~l~iwD~gG~~~~r~~w~~ 62 (169)
T cd04158 2 VVTLGLDGAGKTTILFKLK--QDEFMQ----------PI-------PTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKH 62 (169)
T ss_pred EEEECCCCCCHHHHHHHHH--CCCCCC----------CC-------CCCCCCEEEEEECCEEEEEEECCCCCCCCHHHHH
T ss_conf 9999989998899999995--799689----------77-------8688166999989889999989997244636787
Q ss_pred HHHHHCEEEEEEECCCCC-CHHHHHHHHHHH----HCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHH
Q ss_conf 987421789999768788-647899999999----729978999975436674025689999988862267301104266
Q gi|254780233|r 102 ILCMVESVVVLVDAAEGP-MPQTKFVVGKAL----KIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFPI 176 (624)
Q Consensus 102 ~l~~~DgaiLvVdA~eGv-~~QT~~vl~~A~----~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~Pv 176 (624)
-.+-++++++|||+++-- +..-+..|...+ -.+.|.+++.||.|.+++...+-+.+.++| ..+. ..-.+.+
T Consensus 63 Yy~~~~~iIfVvDssd~~~~~ea~~~l~~ll~~~~~~~~piLIlaNK~Dl~~~~~~~ei~~~l~l-~~~~---~~~~~~i 138 (169)
T cd04158 63 YYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSL-HKLC---CGRSWYI 138 (169)
T ss_pred HCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCC-HHHC---CCCCEEE
T ss_conf 55576279999986306779999999999971275379849999735567779899999998570-5452---6996299
Q ss_pred HHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 887886591646742233486413555321024
Q gi|254780233|r 177 LYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 177 ~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
..+||++| .|+.+.|+.|.+.+
T Consensus 139 ~~~SA~tG-----------~Gi~e~~~WL~~~i 160 (169)
T cd04158 139 QGCDARSG-----------MGLYEGLDWLSRQL 160 (169)
T ss_pred EEEECCCC-----------CCHHHHHHHHHHHH
T ss_conf 95557279-----------59899999999999
No 146
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=99.28 E-value=3.2e-12 Score=99.44 Aligned_cols=81 Identities=30% Similarity=0.394 Sum_probs=67.2
Q ss_pred HHCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCC----CC
Q ss_conf 00011110136777349999960780515988999605785012114553011036653444112545543222----23
Q gi|254780233|r 219 FKMIGTILEKDPFLGRIVTGRIHSGTIKSNQNIKALSPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSIA----GL 294 (624)
Q Consensus 219 l~~~V~~i~~d~y~Gria~gRV~sGtlk~Gd~V~vl~~~g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIvaIa----Gl 294 (624)
|+++||+.+||+|+|.+++.||++|+|++||++..+.. + +..+|.++-.+. .++.+++++.|||++.+. .+
T Consensus 1 LrALifDS~yD~y~Gvv~~vRV~~G~lk~gd~i~~~~t-~---~~~~v~evG~~~-P~~~~~~~L~aGeVGyii~gik~~ 75 (86)
T cd03699 1 LRALIFDSWYDPYRGVIALVRVFDGTLKKGDKIRFMST-G---KEYEVEEVGIFR-PEMTPTDELSAGQVGYIIAGIKTV 75 (86)
T ss_pred CEEEEEEEEECCCCCEEEEEEEECCEECCCCEEEHHHC-C---CCCEEEEEEECC-CCCCCCCEECCCCCCEEEECCCCC
T ss_conf 90899986722788789999997999917985223348-9---963855988717-997638849478404899734201
Q ss_pred CCCCCCCEEC
Q ss_conf 3210122110
Q gi|254780233|r 295 VKATVADTFC 304 (624)
Q Consensus 295 ~~~~iGDTL~ 304 (624)
.++++||||+
T Consensus 76 ~d~~vGDTit 85 (86)
T cd03699 76 KDARVGDTIT 85 (86)
T ss_pred CCCCCCCEEE
T ss_conf 5573447875
No 147
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.27 E-value=1.2e-10 Score=89.06 Aligned_cols=146 Identities=18% Similarity=0.243 Sum_probs=92.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCC-----
Q ss_conf 499985468987788999999839614232200000388577987096064679999989979999728987540-----
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADF----- 95 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF----- 95 (624)
.|||+|--.+|||||.-+| ||+-.. +.+ +- .-|+....--+.|++.+|-++||||....
T Consensus 2 ~V~LVG~PN~GKSTLln~L---T~a~~~---v~~----yp------fTT~~pi~g~~~~~~~~iqlvDtPGli~~a~~g~ 65 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKL---TNTKSE---VAA----YE------FTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGK 65 (233)
T ss_pred EEEEECCCCCCHHHHHHHH---HCCCCC---CCC----CC------CCCCCCEEEEEEECCEEEEEEECCCCCCCCCCCC
T ss_conf 5999999999999999999---789954---369----89------7875747779998998999996730024633332
Q ss_pred --HHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHH--------------------------------------------
Q ss_conf --7999999874217899997687886478999999--------------------------------------------
Q gi|254780233|r 96 --GGEVERILCMVESVVVLVDAAEGPMPQTKFVVGK-------------------------------------------- 129 (624)
Q Consensus 96 --~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~-------------------------------------------- 129 (624)
+-++-..++-+|..++||||.+... |-..+.+.
T Consensus 66 g~g~~~l~~~r~aD~il~VvD~~~~~~-~~~~i~~eLe~~gi~l~~~~~~v~i~~~~~~gi~i~~~~~~~~~~~~~v~~i 144 (233)
T cd01896 66 GRGRQVIAVARTADLILMVLDATKPEG-HREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAI 144 (233)
T ss_pred CHHHHHHHHHHHCCEEEEEEECCCCHH-HHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCEEEECCCCCCCCCHHHHHHH
T ss_conf 068999999875899999984798266-7899999998605110357876257771358678604566666888999999
Q ss_pred ------------------------HHHCC---CCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHH
Q ss_conf ------------------------99729---978999975436674025689999988862267301104266887886
Q gi|254780233|r 130 ------------------------ALKIG---LRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFPILYGSGR 182 (624)
Q Consensus 130 ------------------------A~~~~---l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~Pv~~~Sa~ 182 (624)
++..+ .|.|+++||+|.... + ++..+. . +.++++.||.
T Consensus 145 l~e~~i~~a~v~i~~~~t~dd~~d~i~~n~~y~P~i~V~NKiDl~~~--e----e~~~~~-~--------~~~~i~ISA~ 209 (233)
T cd01896 145 LREYKIHNADVLIREDITVDDLIDVIEGNRVYIPCLYVYNKIDLISI--E----ELDLLA-R--------QPNSVVISAE 209 (233)
T ss_pred HHHHCCCCCEEEECCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCH--H----HHHHHH-C--------CCCEEEEECC
T ss_conf 99827676437860578888989987357676737999974036998--9----999864-6--------7985999888
Q ss_pred CCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 591646742233486413555321024
Q gi|254780233|r 183 FGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 183 ~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
+| .|++.|.++|.+.+
T Consensus 210 ~g-----------~gld~L~~~I~~~L 225 (233)
T cd01896 210 KG-----------LNLDELKERIWDKL 225 (233)
T ss_pred CC-----------CCHHHHHHHHHHHH
T ss_conf 89-----------89899999999983
No 148
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.26 E-value=1e-10 Score=89.62 Aligned_cols=162 Identities=18% Similarity=0.217 Sum_probs=103.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCH
Q ss_conf 24314999854689877889999998396142322000003885779870960646799999899799997289875407
Q gi|254780233|r 17 MQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFG 96 (624)
Q Consensus 17 ~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~ 96 (624)
.+=++|.|+|--.+|||||..+|. .+. ... .. -||.-....+.|++.++++.|+.|+.-|.
T Consensus 17 ~k~~kIlilGld~aGKTTil~~l~--~~~------~~~----~~-------PT~Gfn~e~i~~~~~~~~~wDvgG~~~~R 77 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLK--DDR------LAQ----HV-------PTLHPTSEELTIGNIKFKTFDLGGHEQAR 77 (190)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHH--CCC------CCE----EC-------CCCCCCEEEEEECCEEEEEEECCCCCCCC
T ss_conf 770489999069998899999980--799------531----52-------65587459999899999999899984555
Q ss_pred HHHHHHHHHHCEEEEEEECCCC-CCHHHHHHHHHHH----HCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCC---
Q ss_conf 9999998742178999976878-8647899999999----7299789999754366740256899999888622673---
Q gi|254780233|r 97 GEVERILCMVESVVVLVDAAEG-PMPQTKFVVGKAL----KIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDAT--- 168 (624)
Q Consensus 97 gEVer~l~~~DgaiLvVdA~eG-v~~QT~~vl~~A~----~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~--- 168 (624)
.--..-..-+||+++|||+++= -+...+..+.+.+ -.++|.+|+.||.|.++|-..+-+.+.++|..-....
T Consensus 78 ~lW~~Y~~~~~~iIfVVDssD~~r~~eak~~L~~lL~~~~l~~~PlLIlaNK~Dl~~a~~~~ei~~~L~L~~~~~~~~~~ 157 (190)
T cd00879 78 RLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVS 157 (190)
T ss_pred CCHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCCC
T ss_conf 43888843113799999776778999999999999855500698089998666776798999999883984201554433
Q ss_pred ---HHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCC
Q ss_conf ---0110426688788659164674223348641355532102
Q gi|254780233|r 169 ---DAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDH 208 (624)
Q Consensus 169 ---de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~ 208 (624)
..+..+.+..|||++| .|+..=|+-+.++
T Consensus 158 ~~~~~~r~~~i~~csA~tG-----------~Gl~egl~WLs~~ 189 (190)
T cd00879 158 LKVSGIRPIEVFMCSVVKR-----------QGYGEAFRWLSQY 189 (190)
T ss_pred CCCCCCCCEEEEEEEEECC-----------CCHHHHHHHHHHH
T ss_conf 4545776149996550679-----------6828999999854
No 149
>pfam00071 Ras Ras family. Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices.
Probab=99.26 E-value=5e-11 Score=91.58 Aligned_cols=150 Identities=17% Similarity=0.195 Sum_probs=97.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECC--EEEEEECCCCCCCCHHHH
Q ss_conf 999854689877889999998396142322000003885779870960646799999899--799997289875407999
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWND--VRINIVDTPGHADFGGEV 99 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~--~~iNiiDTPGH~DF~gEV 99 (624)
|+++|.-+.|||||+.+++. |.+...-. -.+..-.....+.+++ +.++|.||||...|....
T Consensus 2 i~vvG~~~vGKTsli~r~~~--~~f~~~~~--------------~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~e~~~~~~ 65 (162)
T pfam00071 2 LVLVGDGGVGKSSLLIRFTQ--NKFPEEYI--------------PTIGVDFYTKTIEVDGKTVKLQIWDTAGQERFRALR 65 (162)
T ss_pred EEEECCCCCCHHHHHHHHHH--CCCCCCCC--------------CCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHH
T ss_conf 89999799779999999961--99998747--------------741355678999999999999999789872046788
Q ss_pred HHHHHHHCEEEEEEECCCCCCHHHH---HHHH-HHHH---CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHC
Q ss_conf 9998742178999976878864789---9999-9997---2997899997543667402568999998886226730110
Q gi|254780233|r 100 ERILCMVESVVVLVDAAEGPMPQTK---FVVG-KALK---IGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQL 172 (624)
Q Consensus 100 er~l~~~DgaiLvVdA~eGv~~QT~---~vl~-~A~~---~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~l 172 (624)
...++-+|++++|.|+.+ +.+- .-|. .+.+ .++|.+++-||+|.+..+.- -.++..++.. ..
T Consensus 66 ~~~~~~ad~~iivfd~~~---~~S~~~i~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~i-~~~e~~~~a~-------~~ 134 (162)
T pfam00071 66 PLYYRGAQGFLLVYDITS---RDSFENVKKWLEEILRHADDNVPIVLVGNKCDLEDQRVV-STEEGEALAK-------EL 134 (162)
T ss_pred HHHHCCCCCCEEECCCCC---HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHCCCC-CHHHHHHHHH-------HH
T ss_conf 998625765504234898---899999999999999857988628899752474651889-9999999999-------80
Q ss_pred CHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 4266887886591646742233486413555321024
Q gi|254780233|r 173 DFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 173 d~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
++|.+.+||++| .|+..+|+.|++.+
T Consensus 135 ~~~y~e~Sak~g-----------~gI~~~F~~i~~~i 160 (162)
T pfam00071 135 GLPFMETSAKTN-----------ENVEEAFEELAREI 160 (162)
T ss_pred CCEEEEECCCCC-----------CCHHHHHHHHHHHH
T ss_conf 997999737888-----------29999999999996
No 150
>pfam01926 MMR_HSR1 GTPase of unknown function.
Probab=99.25 E-value=1e-10 Score=89.53 Aligned_cols=98 Identities=28% Similarity=0.353 Sum_probs=76.1
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCC--------HHHHHHH
Q ss_conf 87788999999839614232200000388577987096064679999989979999728987540--------7999999
Q gi|254780233|r 31 GKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADF--------GGEVERI 102 (624)
Q Consensus 31 GKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF--------~gEVer~ 102 (624)
|||||..+|+... ...+. ..-|.|.......+.|++.++.|+||||...- .....++
T Consensus 1 GKSsLiN~L~~~~-----~~~v~----------~~~gtT~~~~~~~~~~~~~~i~liDTPGi~~~~~~~~~~~~~~~~~~ 65 (106)
T pfam01926 1 GKSTLINALTGKK-----RAIVS----------DYPGTTRDPNEGRVELDGKQIILVDTPGIIEGASKGEGELGNRTLEA 65 (106)
T ss_pred CHHHHHHHHHCCC-----CEEEC----------CCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHHH
T ss_conf 9127999997888-----55552----------88998846355899889988999837873226504678889999972
Q ss_pred HHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 87421789999768788647899999999729978999975
Q gi|254780233|r 103 LCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNK 143 (624)
Q Consensus 103 l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINK 143 (624)
++-+|.+++|+||.++...+...++....+.+.|.|+++||
T Consensus 66 ~~~~d~il~viD~~~~~~~~d~~~~~~l~~~~~p~iiv~NK 106 (106)
T pfam01926 66 IEEADLILHVVDASEGLTEEDLEILDLLLELGKPVILVLNK 106 (106)
T ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 34573799999999999989999999999869988999939
No 151
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.22 E-value=1.1e-10 Score=89.34 Aligned_cols=152 Identities=25% Similarity=0.421 Sum_probs=109.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHH---
Q ss_conf 49998546898778899999983961423220000038857798709606467999998997999972898754079---
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGG--- 97 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~g--- 97 (624)
-+|++|.-..|||||-.+| ||+ ++.|.+. -|.|+--|-..+.++++.|.++|.||--+++.
T Consensus 5 ~valvGNPNvGKTtlFN~L---TG~---~q~VgNw----------pGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~ 68 (653)
T COG0370 5 TVALVGNPNVGKTTLFNAL---TGA---NQKVGNW----------PGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSE 68 (653)
T ss_pred EEEEECCCCCCHHHHHHHH---HCC---CCEECCC----------CCCEEEEEEEEEEECCCEEEEEECCCCCCCCCCCC
T ss_conf 3898569985489999998---566---7465478----------98069987889973585489986897565888992
Q ss_pred H--HHH--HH-HHHCEEEEEEECCCCCCHHHHHHHHH---HHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCH
Q ss_conf 9--999--98-74217899997687886478999999---9972997899997543667402568999998886226730
Q gi|254780233|r 98 E--VER--IL-CMVESVVVLVDAAEGPMPQTKFVVGK---ALKIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATD 169 (624)
Q Consensus 98 E--Ver--~l-~~~DgaiLvVdA~eGv~~QT~~vl~~---A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~d 169 (624)
| |.| .+ .-.|..+-||||+ +-++.++. -+|.|.|.|+++|++|-... ..+. ++.+.-+
T Consensus 69 DE~Var~~ll~~~~D~ivnVvDA~-----nLeRnLyltlQLlE~g~p~ilaLNm~D~A~~--~Gi~-------Id~~~L~ 134 (653)
T COG0370 69 DEKVARDFLLEGKPDLIVNVVDAT-----NLERNLYLTLQLLELGIPMILALNMIDEAKK--RGIR-------IDIEKLS 134 (653)
T ss_pred HHHHHHHHHHCCCCCEEEEEECCC-----HHHHHHHHHHHHHHCCCCEEEEECCHHHHHH--CCCC-------CCHHHHH
T ss_conf 089999998638998899960232-----3777789999999859985999612756886--4971-------2699999
Q ss_pred HHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCCCC
Q ss_conf 11042668878865916467422334864135553210245422
Q gi|254780233|r 170 AQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPPV 213 (624)
Q Consensus 170 e~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~P~ 213 (624)
+.|-.||++.||+.| .|++.|++.|++..+...
T Consensus 135 ~~LGvPVv~tvA~~g-----------~G~~~l~~~i~~~~~~~~ 167 (653)
T COG0370 135 KLLGVPVVPTVAKRG-----------EGLEELKRAIIELAESKT 167 (653)
T ss_pred HHHCCCEEEEEECCC-----------CCHHHHHHHHHHHCCCCC
T ss_conf 986898899873058-----------897999999987432556
No 152
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.22 E-value=3.4e-10 Score=86.16 Aligned_cols=162 Identities=16% Similarity=0.167 Sum_probs=104.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHH
Q ss_conf 43149998546898778899999983961423220000038857798709606467999998997999972898754079
Q gi|254780233|r 18 QIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGG 97 (624)
Q Consensus 18 ~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~g 97 (624)
+=.+|-|+|=-.+||||+..+|.. +. ... .. -|+......+.|+++++++.|..|+.-|-.
T Consensus 16 ke~~ililGLd~aGKTTil~~lk~--~~------~~~----~~-------PT~g~~~e~~~~~~~~~~~wDlgG~~~~R~ 76 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKN--DR------LAQ----HQ-------PTQHPTSEELAIGNIKFTTFDLGGHQQARR 76 (184)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC--CC------CCC----CC-------CCCCCCEEEEEECCEEEEEEECCCCHHHHH
T ss_conf 614799996588988999999806--99------753----05-------787886489999999999998898777889
Q ss_pred HHHHHHHHHCEEEEEEECCCC-CCHHHHHHHHHHH----HCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCC--CCHH
Q ss_conf 999998742178999976878-8647899999999----72997899997543667402568999998886226--7301
Q gi|254780233|r 98 EVERILCMVESVVVLVDAAEG-PMPQTKFVVGKAL----KIGLRPIVVVNKVDRSDARADEVINEVFDLFSALD--ATDA 170 (624)
Q Consensus 98 EVer~l~~~DgaiLvVdA~eG-v~~QT~~vl~~A~----~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~--a~de 170 (624)
-=.+-..-+||.++|||+++- -+.+.+..+...+ -.++|.+|+.||.|.|+|-..+-+.+..+|-.-.+ ....
T Consensus 77 lW~~Yy~~~~~iIfVVDssD~~r~~eak~~L~~ll~~~~l~~~PlLilaNKqDl~~a~~~~ei~~~L~L~~~~~~~~~~~ 156 (184)
T smart00178 77 LWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVG 156 (184)
T ss_pred HHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHCCHHHHCCCCCCC
T ss_conf 99988216758999972686889999999999986467655970999997567778999999998819512326557667
Q ss_pred HCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 104266887886591646742233486413555321024
Q gi|254780233|r 171 QLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 171 ~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
+-.+.+..+||.+| .|+..-|+-+.+++
T Consensus 157 ~r~~~i~~~SA~tG-----------~Gl~egl~WLs~~i 184 (184)
T smart00178 157 VRPLEVFMCSVVRR-----------MGYGEGFKWLSQYI 184 (184)
T ss_pred CCCEEEEEEECCCC-----------CCHHHHHHHHHHHC
T ss_conf 76319997356079-----------78699999998409
No 153
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.20 E-value=2.8e-10 Score=86.69 Aligned_cols=154 Identities=16% Similarity=0.228 Sum_probs=98.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHHH
Q ss_conf 99985468987788999999839614232200000388577987096064679999989979999728987540799999
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVER 101 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVer 101 (624)
|+++|.-+.|||||+.+++. |.+...-. ..-|+....+...+.-..++++|.||||+.+|..-...
T Consensus 3 ivvvG~~~vGKTsli~r~~~--~~f~~~~~------------~ti~~~~~~~~~~~~~~~~~l~iwDt~g~~~~~~~~~~ 68 (161)
T cd01863 3 ILLIGDSGVGKSSLLLRFTD--DTFDPDLA------------ATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSS 68 (161)
T ss_pred EEEECCCCCCHHHHHHHHHH--CCCCCCCC------------CCCCCCCEEEEEEECCEEEEEEEEECCCCCCCCCCHHH
T ss_conf 99999799579999999963--99999848------------73133423899999999999999999998423534224
Q ss_pred HHHHHCEEEEEEECCCCCCHHHHHHHHHHHH-----CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHH
Q ss_conf 9874217899997687886478999999997-----29978999975436674025689999988862267301104266
Q gi|254780233|r 102 ILCMVESVVVLVDAAEGPMPQTKFVVGKALK-----IGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFPI 176 (624)
Q Consensus 102 ~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~-----~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~Pv 176 (624)
.++-+|++++|.|..+----+.-.-|...+. .++|.+++-||.|.++.... .++.+.+-.+ ..+|.
T Consensus 69 ~~~~a~~~ilvfd~~~~~Sf~~i~~~~~~i~~~~~~~~~~~ilVgnK~D~~~~~v~--~~~~~~~a~~-------~~~~y 139 (161)
T cd01863 69 YYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVT--REEGLKFARK-------HNMLF 139 (161)
T ss_pred HHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCC--HHHHHHHHHH-------CCCEE
T ss_conf 41321534899767826569999999999998568888737887310440006899--9999999998-------69999
Q ss_pred HHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 887886591646742233486413555321024
Q gi|254780233|r 177 LYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 177 ~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
+.+||++| .|+..+|+.|++.+
T Consensus 140 ~e~Sak~g-----------~nV~~~F~~l~~~i 161 (161)
T cd01863 140 IETSAKTR-----------DGVQQAFEELVEKI 161 (161)
T ss_pred EEECCCCC-----------CCHHHHHHHHHHHC
T ss_conf 99715868-----------15999999999709
No 154
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.19 E-value=3.1e-10 Score=86.36 Aligned_cols=142 Identities=23% Similarity=0.308 Sum_probs=98.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHH
Q ss_conf 49998546898778899999983961423220000038857798709606467999998997999972898754079999
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVE 100 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVe 100 (624)
.|+|+|-.-+|||||..+|+.+--+|-..- -|-|--.--..+.|+|+.++|+||-|-.+=..++|
T Consensus 218 ~v~i~G~PN~GKSSL~N~L~~~drAIVS~i---------------pGTTRD~ie~~l~l~G~~v~l~DTAGiR~t~d~IE 282 (445)
T PRK05291 218 KVVIAGRPNVGKSSLLNALLGEERAIVTDI---------------AGTTRDVIEEHINLDGIPLRLIDTAGIRETEDEVE 282 (445)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCEEECCC---------------CCCCCCEEEEEEEECCEEEEEEECCCCCCCCCHHH
T ss_conf 699889998768999999857874673189---------------99740402236899998999998997665574588
Q ss_pred -----HHH---HHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHC
Q ss_conf -----998---742178999976878864789999999972997899997543667402568999998886226730110
Q gi|254780233|r 101 -----RIL---CMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQL 172 (624)
Q Consensus 101 -----r~l---~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~l 172 (624)
|+. .-+|-+|+|+|+..+....-...+... .+.+.|+++||.|...... -
T Consensus 283 ~~GI~ra~~~~~~ADlil~v~D~s~~~~~~~~~~~~~~--~~~~~i~V~NK~DL~~~~~--------------------~ 340 (445)
T PRK05291 283 KIGIERSRKAIEEADLVLLVLDASEPLTEEDKEILEEF--KNKPVIVVLNKADLTGEKI--------------------D 340 (445)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCCCHHHHHHHC--CCCCEEEEEEHHHCCCCCC--------------------C
T ss_conf 99999999999839999999879988872259999851--7998799985120466534--------------------7
Q ss_pred CHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 42668878865916467422334864135553210245
Q gi|254780233|r 173 DFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVP 210 (624)
Q Consensus 173 d~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP 210 (624)
..++++.|+++| .|++.|++.|.+.+.
T Consensus 341 ~~~~i~iSak~g-----------~Gi~~L~~~i~~~~~ 367 (445)
T PRK05291 341 GLPVIRISAKTG-----------EGIDELEEALKQLVG 367 (445)
T ss_pred CCCEEEEECCCC-----------CCHHHHHHHHHHHHH
T ss_conf 897599983788-----------699999999999970
No 155
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.19 E-value=5.2e-10 Score=84.91 Aligned_cols=152 Identities=16% Similarity=0.238 Sum_probs=98.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECC--EEEEEECCCCCCCCHHHH
Q ss_conf 999854689877889999998396142322000003885779870960646799999899--799997289875407999
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWND--VRINIVDTPGHADFGGEV 99 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~--~~iNiiDTPGH~DF~gEV 99 (624)
|+|+|.-+.|||+|+.+++. +.+...-. .+. |-+ . ...+.+++ ++++|+||+|+.+|..-.
T Consensus 2 i~ivG~~~vGKTsli~r~~~--~~f~~~~~--pTi----------~~~-~--~~~~~~~~~~~~l~i~Dt~g~~~~~~~~ 64 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVK--GTFVEEYD--PTI----------EDS-Y--RKTIVVDGETYTLDILDTAGQEEFSAMR 64 (160)
T ss_pred EEEECCCCCCHHHHHHHHHH--CCCCCCCC--CCE----------EEE-E--EEEEEECCEEEEEEEEECCCCHHHHHHH
T ss_conf 99999699679999999961--95998778--830----------048-9--9999976699999999799962355788
Q ss_pred HHHHHHHCEEEEEEECCCCCCHHHHHHHHH-HHH----CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCH
Q ss_conf 999874217899997687886478999999-997----299789999754366740256899999888622673011042
Q gi|254780233|r 100 ERILCMVESVVVLVDAAEGPMPQTKFVVGK-ALK----IGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDF 174 (624)
Q Consensus 100 er~l~~~DgaiLvVdA~eGv~~QT~~vl~~-A~~----~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~ 174 (624)
...++-+|++++|.|..+=.--+.-.-|.. ..+ ..+|.+++-||.|.++.+.- ..++++.+..+ +..
T Consensus 65 ~~~~~~a~~~ilvfd~~~~~Sf~~i~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~V-~~~e~~~~a~~-------~~~ 136 (160)
T cd00876 65 DLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQV-SKEEGKALAKE-------WGC 136 (160)
T ss_pred HHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHCCCC-CHHHHHHHHHH-------CCC
T ss_conf 9997643689997328987899999999999999728788629999974562230789-99999999998-------499
Q ss_pred HHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 66887886591646742233486413555321024
Q gi|254780233|r 175 PILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 175 Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
|.+.+||++| .|++++|+.|++.+
T Consensus 137 ~y~e~Sak~g-----------~nV~e~F~~i~~~i 160 (160)
T cd00876 137 PFIETSAKDN-----------INIDEVFKLLVREI 160 (160)
T ss_pred EEEEECCCCC-----------CCHHHHHHHHHHHC
T ss_conf 7999847989-----------49899999999729
No 156
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.19 E-value=3.7e-10 Score=85.89 Aligned_cols=149 Identities=19% Similarity=0.280 Sum_probs=99.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHHH
Q ss_conf 99985468987788999999839614232200000388577987096064679999989979999728987540799999
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVER 101 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVer 101 (624)
|+++|...-|||+|+-+++. +.+...... -=|++...+...+.-+.++++|.||||+..|..-...
T Consensus 3 ivllGd~~VGKTsli~r~~~--~~f~~~~~~------------Tig~~~~~~~~~~~~~~~~l~iwDtaG~e~f~~~~~~ 68 (161)
T cd04124 3 IILLGDSAVGKSKLVERFLM--DGYEPQQLS------------TYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHAS 68 (161)
T ss_pred EEEECCCCCCHHHHHHHHHH--CCCCCCCCC------------CCCEEEEEEEEEECCEEEEEEEEECCCCCCCCHHHHH
T ss_conf 99999899678999999980--977997266------------5415799999999999999999979998434324699
Q ss_pred HHHHHCEEEEEEECCCCCCHHHH---HHHHHHH---HCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHH
Q ss_conf 98742178999976878864789---9999999---72997899997543667402568999998886226730110426
Q gi|254780233|r 102 ILCMVESVVVLVDAAEGPMPQTK---FVVGKAL---KIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFP 175 (624)
Q Consensus 102 ~l~~~DgaiLvVdA~eGv~~QT~---~vl~~A~---~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~P 175 (624)
-.+-+++++||.|.+.= +|- .-|..-+ .-.+|.|++-||+|.+.. +.++-.++- .+..+|
T Consensus 69 y~~~a~~~ilvfDit~~---~Sf~~~~~w~~~i~~~~~~~p~ilVgNK~DL~~~----~~~~~~~~a-------~~~~~~ 134 (161)
T cd04124 69 YYHKAHACILVFDVTRK---ITYKNLSKWYEELREYRPEIPCIVVANKIDLDPS----VTQKKFNFA-------EKHNLP 134 (161)
T ss_pred HHCCCCEEEEEEECCCH---HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCH----HHHHHHHHH-------HHCCCE
T ss_conf 73568767999968977---8899999999999986869989999997117742----589999999-------986991
Q ss_pred HHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 6887886591646742233486413555321024
Q gi|254780233|r 176 ILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 176 v~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
.+.+||++| .+++.+|+.++..+
T Consensus 135 f~etSAk~g-----------~nV~e~F~~l~~~~ 157 (161)
T cd04124 135 LYYVSAADG-----------TNVVKLFQDAIKLA 157 (161)
T ss_pred EEEEECCCC-----------CCHHHHHHHHHHHH
T ss_conf 999907838-----------09799999999999
No 157
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.19 E-value=1.3e-10 Score=88.97 Aligned_cols=156 Identities=16% Similarity=0.186 Sum_probs=97.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHH
Q ss_conf 49998546898778899999983961423220000038857798709606467999998997999972898754079999
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVE 100 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVe 100 (624)
.|+++|..+.|||||+.+++. |.+...... + -|.+...+...+.-..+.++|.||||+.+|..-..
T Consensus 2 Ki~vvG~~~vGKTsli~r~~~--~~f~~~~~~--t----------i~~~~~~k~i~~~~~~~~l~iwDt~G~~~~~~~~~ 67 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVE--NKFNEKHES--T----------TQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGP 67 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHH--CCCCCCCCC--C----------CEEEEEEEEEEECCEEEEEEEEECCCCCCCCCCCH
T ss_conf 899999999679999999983--989987677--5----------26479999999999999999995899730355631
Q ss_pred HHHHHHCEEEEEEECCCCCCHHHHHHHHH----HHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHH
Q ss_conf 99874217899997687886478999999----99729978999975436674025689999988862267301104266
Q gi|254780233|r 101 RILCMVESVVVLVDAAEGPMPQTKFVVGK----ALKIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFPI 176 (624)
Q Consensus 101 r~l~~~DgaiLvVdA~eGv~~QT~~vl~~----A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~Pv 176 (624)
..++-+|+++||.|..+=---+.-.-|.. ......|.|++-||.|.++.+.- -.+|..++..+ +.+|.
T Consensus 68 ~~~~~a~~~ilv~d~t~~~Sf~~i~~~~~~i~~~~~~~~~iilvgnK~Dl~~~r~v-~~~e~~~~a~~-------~~~~y 139 (162)
T cd04123 68 IYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVV-SKSEAEEYAKS-------VGAKH 139 (162)
T ss_pred HHEECCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHCCC-CHHHHHHHHHH-------CCCEE
T ss_conf 33011445799963899899999999999999876999746866332132540888-99999999998-------29989
Q ss_pred HHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 887886591646742233486413555321024
Q gi|254780233|r 177 LYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 177 ~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
+.+||++| .|+..+|+.|++.+
T Consensus 140 ~e~Sak~g-----------~nV~e~F~~l~~~i 161 (162)
T cd04123 140 FETSAKTG-----------KGIEELFLSLAKRM 161 (162)
T ss_pred EEEECCCC-----------CCHHHHHHHHHHHH
T ss_conf 99812788-----------19899999999986
No 158
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.18 E-value=4.3e-10 Score=85.45 Aligned_cols=157 Identities=19% Similarity=0.244 Sum_probs=97.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHH
Q ss_conf 49998546898778899999983961423220000038857798709606467999998997999972898754079999
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVE 100 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVe 100 (624)
.|+++|-.+.|||+|+-+++. +.+...-. ..-|....++...+.-...+++|.||+|+..|..-..
T Consensus 3 KivviGd~~vGKTsli~r~~~--~~f~~~~~------------~Tig~~~~~k~i~~~~~~v~l~iwDtaG~e~~~~~~~ 68 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVK--NEFSENQE------------STIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAP 68 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHH--CCCCCCCC------------CCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHH
T ss_conf 999999599689999999943--98999868------------8666788999999999999999997999710027889
Q ss_pred HHHHHHCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHH
Q ss_conf 99874217899997687886478999999997----29978999975436674025689999988862267301104266
Q gi|254780233|r 101 RILCMVESVVVLVDAAEGPMPQTKFVVGKALK----IGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFPI 176 (624)
Q Consensus 101 r~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~----~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~Pv 176 (624)
.-.+-+|+++||.|..+=---+.-.-|..-+. ..+|.+++-||+|..+.+.- -.++...+-. +..++.
T Consensus 69 ~~~~~a~~~ilvydit~~~Sf~~~~~w~~~i~~~~~~~~~iilVgnK~DL~~~r~V-~~~e~~~~a~-------~~~~~~ 140 (163)
T cd01860 69 MYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQV-STEEAQEYAD-------ENGLLF 140 (163)
T ss_pred HHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHCCCC-CHHHHHHHHH-------HCCCEE
T ss_conf 88516771499981899799999999999999855987236775533575650899-9999999999-------829979
Q ss_pred HHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 8878865916467422334864135553210245
Q gi|254780233|r 177 LYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVP 210 (624)
Q Consensus 177 ~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP 210 (624)
+.+||++| .|++.+|+.|++.+|
T Consensus 141 ~E~SAk~~-----------~nV~e~F~~l~~~i~ 163 (163)
T cd01860 141 FETSAKTG-----------ENVNELFTEIAKKLP 163 (163)
T ss_pred EEECCCCC-----------CCHHHHHHHHHHHCC
T ss_conf 99862659-----------078999999998583
No 159
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.18 E-value=3.1e-11 Score=92.99 Aligned_cols=86 Identities=27% Similarity=0.283 Sum_probs=69.2
Q ss_pred HCCCCCCCCCCCC-CEEEEEEECCCCCCCCCEEEEECCCC-----CCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0011110136777-34999996078051598899960578-----50121145530110366534441125455432222
Q gi|254780233|r 220 KMIGTILEKDPFL-GRIVTGRIHSGTIKSNQNIKALSPDG-----ALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSIAG 293 (624)
Q Consensus 220 ~~~V~~i~~d~y~-Gria~gRV~sGtlk~Gd~V~vl~~~g-----~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIvaIaG 293 (624)
.++|+|....+.. ..++++||+||+|++||+|+++.++. +......|.+||.++|..+++++++.||+||+|.|
T Consensus 2 vv~v~K~~~~~d~~~F~af~RV~SGtl~~G~~V~Vlg~~y~~~~~~d~~~~~V~~l~l~~Gr~~~~v~~v~AGniv~I~G 81 (94)
T cd04090 2 VVHVTKLYSTSDGGSFWAFGRIYSGTIKKGQKVKVLGENYSLDDEEDMTICTIGRLWILGGRYKIEVNEAPAGNWVLIKG 81 (94)
T ss_pred EEEEEEECCCCCCCEEEEEEEEEEEEECCCCEEEEECCCCCCCCCCCCEEEEEEEEEEECCCEEEECCCCCCCCEEEEEC
T ss_conf 79998611149998899999998867848999999799989898541049896689996211487978269988999982
Q ss_pred CCCCCC-CCEECC
Q ss_conf 332101-221105
Q gi|254780233|r 294 LVKATV-ADTFCD 305 (624)
Q Consensus 294 l~~~~i-GDTL~~ 305 (624)
+++.-. .-|||+
T Consensus 82 ld~~i~KsaTiss 94 (94)
T cd04090 82 IDSSIVKTATITS 94 (94)
T ss_pred CCCCEEEEEEEEC
T ss_conf 4003896799619
No 160
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.17 E-value=5.5e-10 Score=84.76 Aligned_cols=149 Identities=20% Similarity=0.273 Sum_probs=93.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECC--EEEEEECCCCCCCCHHH
Q ss_conf 4999854689877889999998396142322000003885779870960646799999899--79999728987540799
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWND--VRINIVDTPGHADFGGE 98 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~--~~iNiiDTPGH~DF~gE 98 (624)
.|+++|.-+.|||||+.+++. +.+...- .+ --|..... ..+.+++ ++++|.||||...|..-
T Consensus 2 Ki~vvG~~~vGKTsli~~~~~--~~f~~~~---------~~---Tig~d~~~--~~~~~~~~~~~l~iwDt~G~e~~~~l 65 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVD--GKFDENY---------KS---TIGVDFKS--KTIEIDGKTVKLQIWDTAGQERFRSI 65 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHH--CCCCCCC---------CC---CCCEEEEE--EEEEECCEEEEEEEEECCCCHHHHHH
T ss_conf 899999699689999999970--9999984---------88---66647999--99999999999999978982657788
Q ss_pred HHHHHHHHCEEEEEEECCCCCCHHHHH---HHHH-HHH---CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 999987421789999768788647899---9999-997---299789999754366740256899999888622673011
Q gi|254780233|r 99 VERILCMVESVVVLVDAAEGPMPQTKF---VVGK-ALK---IGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQ 171 (624)
Q Consensus 99 Ver~l~~~DgaiLvVdA~eGv~~QT~~---vl~~-A~~---~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ 171 (624)
...-++-+|++++|.|..+- ++-. -|.. ..+ .+.|.+++-||+|.+..+-- -.++..++..+
T Consensus 66 ~~~~~~~~d~~ilv~d~~~~---~Sf~~~~~~~~~i~~~~~~~~~iilvgnK~DL~~~~~v-~~~~~~~~a~~------- 134 (159)
T cd00154 66 TPSYYRGAHGAILVYDITNR---ESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQV-STEEAQQFAKE------- 134 (159)
T ss_pred HHHHHHHCCEEEEECCCCCH---HHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHCCCC-CHHHHHHHHHH-------
T ss_conf 99997541275672448988---99999999999999868988826999974563011689-99999999998-------
Q ss_pred CCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHC
Q ss_conf 042668878865916467422334864135553210
Q gi|254780233|r 172 LDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVD 207 (624)
Q Consensus 172 ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~ 207 (624)
..++.+.+||++| .|+..+|+.|++
T Consensus 135 ~~~~~~e~SAk~~-----------~~i~~~F~~i~~ 159 (159)
T cd00154 135 NGLLFFETSAKTG-----------ENVEELFQSLAE 159 (159)
T ss_pred CCCEEEEECCCCC-----------CCHHHHHHHHHC
T ss_conf 6997999876888-----------198999999869
No 161
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.15 E-value=4e-10 Score=85.67 Aligned_cols=156 Identities=17% Similarity=0.204 Sum_probs=102.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHH
Q ss_conf 49998546898778899999983961423220000038857798709606467999998997999972898754079999
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVE 100 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVe 100 (624)
-|.++|..+-|||+|+-++.. +.+.... .. -.-|+....+...+.....+++|.||+|...|..-..
T Consensus 2 KIv~vGd~~VGKTsli~r~~~--~~f~~~~-~~----------~Ti~~~~~~k~~~~~~~~v~l~iwDtaG~e~~~~l~~ 68 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKD--GAFLNGN-FI----------ATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTH 68 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHH--CCCCCCC-CC----------CCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCCCHH
T ss_conf 899999499879999999995--9789998-67----------7652477999999999999999997998633464647
Q ss_pred HHHHHHCEEEEEEECCCCCCHHHH---HHHHH-HHH---CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCC
Q ss_conf 998742178999976878864789---99999-997---29978999975436674025689999988862267301104
Q gi|254780233|r 101 RILCMVESVVVLVDAAEGPMPQTK---FVVGK-ALK---IGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLD 173 (624)
Q Consensus 101 r~l~~~DgaiLvVdA~eGv~~QT~---~vl~~-A~~---~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld 173 (624)
.-.+-+|++|||.|..+= ++- ..|.. ..+ .++|++++-||.|.++.+.- -.++..++-. +..
T Consensus 69 ~~~~~a~~~ilvydit~~---~Sf~~l~~w~~~i~~~~~~~~~iilVGNK~DL~~~r~V-~~~e~~~~a~-------~~~ 137 (191)
T cd04112 69 AYYRDAHALLLLYDITNK---ASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVV-KREDGERLAK-------EYG 137 (191)
T ss_pred HHHHCCCEEEEEEECCCH---HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCC-CHHHHHHHHH-------HCC
T ss_conf 771177778999727988---99999999999999866678538986124655302679-9999999999-------829
Q ss_pred HHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf 26688788659164674223348641355532102454
Q gi|254780233|r 174 FPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPP 211 (624)
Q Consensus 174 ~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~ 211 (624)
+|.+.+||++| .|++.+|+.|+..+..
T Consensus 138 ~~f~EtSAkt~-----------~nI~e~F~~i~~~i~~ 164 (191)
T cd04112 138 VPFMETSAKTG-----------LNVELAFTAVAKELKH 164 (191)
T ss_pred CEEEEECCCCC-----------CCHHHHHHHHHHHHHH
T ss_conf 97999854898-----------0979999999999987
No 162
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.15 E-value=3.7e-10 Score=85.89 Aligned_cols=156 Identities=16% Similarity=0.187 Sum_probs=99.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHH
Q ss_conf 43149998546898778899999983961423220000038857798709606467999998997999972898754079
Q gi|254780233|r 18 QIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGG 97 (624)
Q Consensus 18 ~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~g 97 (624)
.+=.|+++|..+-|||+|+-+++. +.+...-. .+ =|+....+...+.=+.++++|.||+|+.+|..
T Consensus 4 ~~~KivvlGd~~VGKTsli~r~~~--~~f~~~~~--~T----------ig~~~~~k~i~~~~~~v~l~iwDtaG~e~~~~ 69 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVT--NKFDTQLF--HT----------IGVEFLNKDLEVDGHFVTLQIWDTAGQERFRS 69 (170)
T ss_pred EEEEEEEECCCCCCHHHHHHHHHH--CCCCCCCC--CC----------CEEEEEEEEEEECCEEEEEEEEECCCCCCCCC
T ss_conf 089999999999789999999973--98999888--87----------60798999999999999999998999724352
Q ss_pred HHHHHHHHHCEEEEEEECCCCCCHHHH---HHHHHHH--------HCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 999998742178999976878864789---9999999--------72997899997543667402568999998886226
Q gi|254780233|r 98 EVERILCMVESVVVLVDAAEGPMPQTK---FVVGKAL--------KIGLRPIVVVNKVDRSDARADEVINEVFDLFSALD 166 (624)
Q Consensus 98 EVer~l~~~DgaiLvVdA~eGv~~QT~---~vl~~A~--------~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~ 166 (624)
-.....+-+|+++||.|..+= ++- ..|..-+ ..++|.|++-||+|.++... ..++...+..+.+
T Consensus 70 l~~~~~~~a~~~ilvydit~~---~Sf~~~~~w~~~~~~~~~~~~~~~~piilvgnK~Dl~~r~v--~~~e~~~~a~~~~ 144 (170)
T cd04116 70 LRTPFYRGSDCCLLTFAVDDS---QSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQV--STEEAQAWCRENG 144 (170)
T ss_pred CHHHHEECCCEEEEEEECCCH---HHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHCCC--CHHHHHHHHHHCC
T ss_conf 417660047733999978887---99999999999999971445788840999961111303788--9999999999859
Q ss_pred CCHHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 7301104266887886591646742233486413555321024
Q gi|254780233|r 167 ATDAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 167 a~de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
..|.+.+||++| .|+..+|+.++..+
T Consensus 145 ------~~~~~E~SAk~g-----------~nV~~~F~~l~~~i 170 (170)
T cd04116 145 ------DYPYFETSAKDA-----------TNVAAAFEEAVRRV 170 (170)
T ss_pred ------CCEEEEECCCCC-----------CCHHHHHHHHHHCC
T ss_conf ------978999888888-----------18899999999539
No 163
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.14 E-value=1e-09 Score=83.02 Aligned_cols=153 Identities=16% Similarity=0.256 Sum_probs=101.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHHH
Q ss_conf 99985468987788999999839614232200000388577987096064679999989979999728987540799999
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVER 101 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVer 101 (624)
|+++|....|||+|+-+.+ .+.|...... .-|+....+...+.-+.++++|.||+|...|..-+..
T Consensus 3 ivlvGd~~VGKTsLi~rf~--~~~F~~~y~~------------Tig~d~~~k~i~v~~~~v~l~iwDtaGqe~f~~~~~~ 68 (182)
T cd04128 3 IGLLGDAQIGKTSLMVKYV--EGEFDEDYIQ------------TLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPL 68 (182)
T ss_pred EEEECCCCCCHHHHHHHHH--CCCCCCCCCC------------CCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHH
T ss_conf 9999999989899999995--3999999888------------7338989999999999999999867764878999999
Q ss_pred HHHHHCEEEEEEECCCCCCHHHH---HHHHHHH-H--CCCCEEEEEECCCCCCC----CHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 98742178999976878864789---9999999-7--29978999975436674----0256899999888622673011
Q gi|254780233|r 102 ILCMVESVVVLVDAAEGPMPQTK---FVVGKAL-K--IGLRPIVVVNKVDRSDA----RADEVINEVFDLFSALDATDAQ 171 (624)
Q Consensus 102 ~l~~~DgaiLvVdA~eGv~~QT~---~vl~~A~-~--~~l~~IvvINKiDr~~a----~~~~v~~ei~dlf~~l~a~de~ 171 (624)
-.+-+++++||.|.++= +|- .-|..-. . ...++|+|-||.|...- .-+++.++..++- .+
T Consensus 69 y~~~a~~~ilvfDit~~---~Sf~~~~~w~~~i~~~~~~~~~ilVGnK~DL~~~~~~~~~~~~~~~~~~~a-------~~ 138 (182)
T cd04128 69 VCNDAVAILFMFDLTRK---STLNSIKEWYRQARGFNKTAIPILVGTKYDLFADLPPEEQEEITKQARKYA-------KA 138 (182)
T ss_pred HHCCCCEEEEEEECCCH---HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHEEHHHHHHHHHH-------HH
T ss_conf 86478789999978998---999989999999997689998899998663556556223102489999999-------98
Q ss_pred CCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 04266887886591646742233486413555321024
Q gi|254780233|r 172 LDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 172 ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
+.+|.+.+||++| .|++.+|+.|+..+
T Consensus 139 ~~~~f~etSAk~~-----------~nV~e~F~~i~~~i 165 (182)
T cd04128 139 MKAPLIFCSTSHS-----------INVQKIFKIVLAKA 165 (182)
T ss_pred CCCEEEEEECCCC-----------CCHHHHHHHHHHHH
T ss_conf 4998999947999-----------79899999999999
No 164
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.14 E-value=6.7e-10 Score=84.22 Aligned_cols=156 Identities=14% Similarity=0.160 Sum_probs=98.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHH
Q ss_conf 49998546898778899999983961423220000038857798709606467999998997999972898754079999
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVE 100 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVe 100 (624)
-|+++|..+.|||+|+.+++. +.+...-. .+ -|+....+...+.-+..+++|.||+|+..|..-..
T Consensus 5 KivlvGd~~vGKTsli~r~~~--~~f~~~~~--~T----------ig~~~~~k~v~~~~~~i~l~iwDt~G~e~~~~~~~ 70 (167)
T cd01867 5 KLLLIGDSGVGKSCLLLRFSE--DSFNPSFI--ST----------IGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITT 70 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHH--CCCCCCCC--CC----------CCEEEEEEEEEECCEEEEEEEEECCCCCCHHHHHH
T ss_conf 999999999788999999960--99999868--98----------64688999999999999999998999700116679
Q ss_pred HHHHHHCEEEEEEECCCCCCHHHHHHHHHHH-H---CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHH
Q ss_conf 9987421789999768788647899999999-7---29978999975436674025689999988862267301104266
Q gi|254780233|r 101 RILCMVESVVVLVDAAEGPMPQTKFVVGKAL-K---IGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFPI 176 (624)
Q Consensus 101 r~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~-~---~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~Pv 176 (624)
.-++-+|++|||.|..+=---+.-.-|..-+ + .++|.+++-||.|.++.|.- -.++..++.. +..+|.
T Consensus 71 ~y~~~a~~~ilvfdit~~~Sf~~~~~w~~~i~~~~~~~~~~ilVgNK~Dl~~~r~v-~~~e~~~~a~-------~~~~~~ 142 (167)
T cd01867 71 AYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVV-SKEEGEALAD-------EYGIKF 142 (167)
T ss_pred HHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHCCCC-CHHHHHHHHH-------HHCCEE
T ss_conf 98565058899556898799999999999999866999705764212450230779-9999999999-------809969
Q ss_pred HHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 887886591646742233486413555321024
Q gi|254780233|r 177 LYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 177 ~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
+.+||++| .|+..+|+.|++.+
T Consensus 143 ~e~SAktg-----------~nI~e~F~~l~~~i 164 (167)
T cd01867 143 LETSAKAN-----------INVEEAFFTLAKDI 164 (167)
T ss_pred EEECCCCC-----------CCHHHHHHHHHHHH
T ss_conf 99822579-----------07899999999999
No 165
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.12 E-value=5.1e-10 Score=85.00 Aligned_cols=153 Identities=18% Similarity=0.239 Sum_probs=94.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECC--EEEEEECCCCCCCCHHHH
Q ss_conf 999854689877889999998396142322000003885779870960646799999899--799997289875407999
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWND--VRINIVDTPGHADFGGEV 99 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~--~~iNiiDTPGH~DF~gEV 99 (624)
|+++|..+.|||||+.+++. |.+...-.. .-|+....+ .+.+++ ++++|.||+|+.+|..-.
T Consensus 3 i~vvG~~~vGKTsli~r~~~--~~f~~~~~~------------Ti~~~~~~~--~i~~~~~~~~l~iwDt~G~e~~~~l~ 66 (164)
T smart00175 3 IILIGDSGVGKSSLLSRFTD--GKFSEQYKS------------TIGVDFKTK--TIEVDGKRVKLQIWDTAGQERFRSIT 66 (164)
T ss_pred EEEECCCCCCHHHHHHHHHH--CCCCCCCCC------------CCCEEEEEE--EEEECCEEEEEEEEECCCCHHHHHHH
T ss_conf 99999899779999999941--999998688------------456666779--99999999999999679944664779
Q ss_pred HHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHH
Q ss_conf 999874217899997687886478999999997----2997899997543667402568999998886226730110426
Q gi|254780233|r 100 ERILCMVESVVVLVDAAEGPMPQTKFVVGKALK----IGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFP 175 (624)
Q Consensus 100 er~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~----~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~P 175 (624)
..-.+-+|++++|.|..+=---+.-.-|..-+. .+.|.+++-||+|.++.+.-. .++...+-. ...+|
T Consensus 67 ~~~~~~~~~~ilvfdi~~~~Sf~~i~~w~~~i~~~~~~~~piilvgnK~Dl~~~r~V~-~~e~~~~a~-------~~~~~ 138 (164)
T smart00175 67 SSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVS-REEAEAFAE-------EHGLP 138 (164)
T ss_pred HHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHCCCC-HHHHHHHHH-------HCCCE
T ss_conf 9883366536884368998999999999999998679998255116456856518799-999999999-------84997
Q ss_pred HHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 6887886591646742233486413555321024
Q gi|254780233|r 176 ILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 176 v~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
.+.+||++| .|++.+|+.+++.+
T Consensus 139 ~~e~SAk~~-----------~~v~e~F~~l~~~i 161 (164)
T smart00175 139 FFETSAKTN-----------TNVEEAFEELAREI 161 (164)
T ss_pred EEEECCCCC-----------CCHHHHHHHHHHHH
T ss_conf 999831669-----------08899999999999
No 166
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.12 E-value=1.5e-09 Score=81.93 Aligned_cols=153 Identities=18% Similarity=0.229 Sum_probs=96.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECC--EEEEEECCCCCCCCHHHH
Q ss_conf 999854689877889999998396142322000003885779870960646799999899--799997289875407999
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWND--VRINIVDTPGHADFGGEV 99 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~--~~iNiiDTPGH~DF~gEV 99 (624)
|+++|-.+.|||+|+.+++. |.+...-. + .-|+....+ .+.+++ ++++|.||+|+..|..-.
T Consensus 3 ivvvG~~~vGKTSLi~r~~~--~~f~~~y~---------p---Tig~~~~~k--~~~~~~~~~~l~iwDt~G~~~~~~~~ 66 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCE--GRFVSKYL---------P---TIGIDYGVK--KVSVRNKEVRVNFFDLSGHPEYLEVR 66 (168)
T ss_pred EEEECCCCCCHHHHHHHHHH--CCCCCCCC---------C---CCCEEEEEE--EEEECCEEEEEEEEECCCCHHHHHHH
T ss_conf 99999599568999999963--99999858---------9---765577799--99999999999999899976478999
Q ss_pred HHHHHHHCEEEEEEECCCCCCHHHHHHHHHHH-H--------CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHH
Q ss_conf 99987421789999768788647899999999-7--------29978999975436674025689999988862267301
Q gi|254780233|r 100 ERILCMVESVVVLVDAAEGPMPQTKFVVGKAL-K--------IGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDA 170 (624)
Q Consensus 100 er~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~-~--------~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de 170 (624)
..-++-+|+++||-|...----+.-.-|..-+ + ...|.+++-||+|.+..+.-. .++...+..
T Consensus 67 ~~~~~~ad~~ilvydit~~~Sf~~l~~w~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v~-~~~~~~~a~------- 138 (168)
T cd04119 67 NEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVS-EDEGRLWAE------- 138 (168)
T ss_pred HHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCC-HHHHHHHHH-------
T ss_conf 999874778899950897444899999999999982453456686299985403444257889-999999999-------
Q ss_pred HCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 104266887886591646742233486413555321024
Q gi|254780233|r 171 QLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 171 ~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
+..+|.+.+||++| .|+..+|+.|+..+
T Consensus 139 ~~~~~~~E~Sak~g-----------~~V~e~F~~l~~~i 166 (168)
T cd04119 139 SKGFKYFETSACTG-----------EGVNEMFQTLFSSI 166 (168)
T ss_pred HCCCEEEEECCCCC-----------CCHHHHHHHHHHHH
T ss_conf 86998999885779-----------08899999999997
No 167
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.11 E-value=1.2e-09 Score=82.61 Aligned_cols=153 Identities=16% Similarity=0.169 Sum_probs=95.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEE----------CCEEEEEECCC
Q ss_conf 49998546898778899999983961423220000038857798709606467999998----------99799997289
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVW----------NDVRINIVDTP 90 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~----------~~~~iNiiDTP 90 (624)
-|+++|..+.|||+|+-+++ .|.+...-.. + =|+....+...+.. ...+++|.||+
T Consensus 6 KivvvGd~~VGKTsli~r~~--~~~f~~~y~~--T----------ig~~~~~k~i~~~~~~~~~~~~~~~~v~l~iwDta 71 (180)
T cd04127 6 KFLALGDSGVGKTSFLYQYT--DNKFNPKFIT--T----------VGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTA 71 (180)
T ss_pred EEEEECCCCCCHHHHHHHHH--CCCCCCCCCC--C----------CCEEEEEEEEEECCCCCCCCCCCCCEEEEEEEECC
T ss_conf 99999999988899999996--1958998688--4----------32268899999847655444578858999999898
Q ss_pred CCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHH---HHHHHHHH-----CCCCEEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 8754079999998742178999976878864789---99999997-----299789999754366740256899999888
Q gi|254780233|r 91 GHADFGGEVERILCMVESVVVLVDAAEGPMPQTK---FVVGKALK-----IGLRPIVVVNKVDRSDARADEVINEVFDLF 162 (624)
Q Consensus 91 GH~DF~gEVer~l~~~DgaiLvVdA~eGv~~QT~---~vl~~A~~-----~~l~~IvvINKiDr~~a~~~~v~~ei~dlf 162 (624)
|+..|..-...-++-++|+|||.|..+- ++- .-|..-+. .+.|.++|-||+|.++.|.- -.++..++-
T Consensus 72 Gqe~~~~l~~~~~~~a~~~ilvydit~~---~Sf~~l~~w~~~i~~~~~~~~~~iilVGNK~DL~~~r~V-~~~e~~~~a 147 (180)
T cd04127 72 GQERFRSLTTAFFRDAMGFLLIFDLTNE---QSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQV-SEEQAKALA 147 (180)
T ss_pred CCHHHHHHHHHHHHHHCEEEEEEECCCH---HHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHCCCC-CHHHHHHHH
T ss_conf 8630478889998754365899968988---999989999999998546689857875032366750888-999999999
Q ss_pred HHCCCCHHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 62267301104266887886591646742233486413555321024
Q gi|254780233|r 163 SALDATDAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 163 ~~l~a~de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
.+..+|.+.+||++| .|++.+|+.|++.+
T Consensus 148 -------~~~~~~~~E~SAk~g-----------~nV~e~F~~l~~~i 176 (180)
T cd04127 148 -------DKYGIPYFETSAATG-----------TNVEKAVERLLDLV 176 (180)
T ss_pred -------HHCCCEEEEECCCCC-----------CCHHHHHHHHHHHH
T ss_conf -------984997999803779-----------19899999999999
No 168
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.11 E-value=1e-09 Score=83.01 Aligned_cols=156 Identities=14% Similarity=0.225 Sum_probs=97.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHH
Q ss_conf 49998546898778899999983961423220000038857798709606467999998997999972898754079999
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVE 100 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVe 100 (624)
-|+++|..+.|||+|+-+++. +.+...-. + .-|+....+...+.-+..+++|.||+|+..|..-..
T Consensus 4 Kiv~vGd~~vGKTsli~r~~~--~~f~~~y~---------~---Tig~~~~~~~i~~~~~~~~l~iwDtaG~e~~~~~~~ 69 (166)
T cd01869 4 KLLLIGDSGVGKSCLLLRFAD--DTYTESYI---------S---TIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITS 69 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHC--CCCCCCCC---------C---CCCEEEEEEEEEECCEEEEEEEEECCCCCCCCCCHH
T ss_conf 999999999789999999943--99998747---------8---544048999999999999999998999823462678
Q ss_pred HHHHHHCEEEEEEECCCCCCHHHHHHHHHHH----HCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHH
Q ss_conf 9987421789999768788647899999999----729978999975436674025689999988862267301104266
Q gi|254780233|r 101 RILCMVESVVVLVDAAEGPMPQTKFVVGKAL----KIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFPI 176 (624)
Q Consensus 101 r~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~----~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~Pv 176 (624)
.-.+-+|++|||.|...=---+--.-|..-+ ..+.|.|++-||+|.++.+.-. .++...+-.. +.+|.
T Consensus 70 ~~~~~a~~~ilvfdit~~~Sf~~i~~w~~~i~~~~~~~~~~ilvgNK~DL~~~r~v~-~~~~~~~a~~-------~~~~~ 141 (166)
T cd01869 70 SYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVD-YSEAQEFADE-------LGIPF 141 (166)
T ss_pred HHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCC-HHHHHHHHHH-------CCCEE
T ss_conf 885632677997117998999999999999998678777448861320113146679-9999999998-------39969
Q ss_pred HHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 887886591646742233486413555321024
Q gi|254780233|r 177 LYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 177 ~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
+.+||++| .|+..+|+.|++.+
T Consensus 142 ~E~SAk~g-----------~nI~e~F~~l~~~i 163 (166)
T cd01869 142 LETSAKNA-----------TNVEQAFMTMAREI 163 (166)
T ss_pred EEECCCCC-----------CCHHHHHHHHHHHH
T ss_conf 99876878-----------06899999999999
No 169
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.10 E-value=1.5e-09 Score=81.83 Aligned_cols=152 Identities=18% Similarity=0.237 Sum_probs=94.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHHH
Q ss_conf 99985468987788999999839614232200000388577987096064679999989979999728987540799999
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVER 101 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVer 101 (624)
|+++|..+.|||+|+-+++. +.+...-. .++ |.....+...+.=+.++++|.||+|+..|..-...
T Consensus 3 ivlvGd~~VGKTsli~r~~~--~~f~~~y~--~Ti----------g~d~~~k~i~~~~~~~~l~iwDtaG~e~~~~l~~~ 68 (172)
T cd01862 3 VIILGDSGVGKTSLMNQYVN--KKFSNQYK--ATI----------GADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVA 68 (172)
T ss_pred EEEECCCCCCHHHHHHHHHC--CCCCCCCC--CCC----------CEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHH
T ss_conf 99999899789999999952--98898757--755----------51699999999999999999969998311068899
Q ss_pred HHHHHCEEEEEEECCCCCCHHHH---HHHHHH-HH-------CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHH
Q ss_conf 98742178999976878864789---999999-97-------29978999975436674025689999988862267301
Q gi|254780233|r 102 ILCMVESVVVLVDAAEGPMPQTK---FVVGKA-LK-------IGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDA 170 (624)
Q Consensus 102 ~l~~~DgaiLvVdA~eGv~~QT~---~vl~~A-~~-------~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de 170 (624)
..+-+|+++||.|... +++- .-|..- .. ..+|.|++-||+|.++.|.- -.++..++....+
T Consensus 69 ~~~~a~~~ilvydvt~---~~Sf~~l~~w~~~~~~~~~~~~~~~~piilvgNK~Dl~~~r~V-~~~e~~~~a~~~~---- 140 (172)
T cd01862 69 FYRGADCCVLVYDVTN---PKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQV-STKKAQQWCQSNG---- 140 (172)
T ss_pred HHHHCCEEEEEECCCC---HHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHHCCCC-CHHHHHHHHHHCC----
T ss_conf 8652757999933899---8999999999999999727677657638999633683641899-9999999999769----
Q ss_pred HCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 10426688788659164674223348641355532102
Q gi|254780233|r 171 QLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDH 208 (624)
Q Consensus 171 ~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~ 208 (624)
..+.+.+||++| .|+..+|+.+++.
T Consensus 141 --~~~~~E~SAk~~-----------~nV~e~F~~l~~~ 165 (172)
T cd01862 141 --NIPYFETSAKEA-----------INVEQAFETIARK 165 (172)
T ss_pred --CCEEEEECCCCC-----------CCHHHHHHHHHHH
T ss_conf --978999752679-----------1989999999999
No 170
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.10 E-value=1e-09 Score=83.06 Aligned_cols=152 Identities=18% Similarity=0.226 Sum_probs=98.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHH
Q ss_conf 49998546898778899999983961423220000038857798709606467999998997999972898754079999
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVE 100 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVe 100 (624)
-|+++|-..-|||+|+-+++. +.+...-. .++ |-. ..+...+.-+..+++|.||+|+.+|..-..
T Consensus 2 KvvlvGd~~VGKTsli~r~~~--~~F~~~y~--pTi----------~~~-~~~~~~~~~~~v~l~iwDtaG~e~~~~l~~ 66 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMY--DEFVEDYE--PTK----------ADS-YRKKVVLDGEDVQLNILDTAGQEDYAAIRD 66 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHH--CCCCCCCC--CCC----------CCE-EEEEEEECCEEEEEEEEECCCCHHHHHHHH
T ss_conf 799999999889999999971--98987748--854----------416-899999999999999998988662488999
Q ss_pred HHHHHHCEEEEEEECCCCCCHHH----HHHHHHHHH----CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHC
Q ss_conf 99874217899997687886478----999999997----2997899997543667402568999998886226730110
Q gi|254780233|r 101 RILCMVESVVVLVDAAEGPMPQT----KFVVGKALK----IGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQL 172 (624)
Q Consensus 101 r~l~~~DgaiLvVdA~eGv~~QT----~~vl~~A~~----~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~l 172 (624)
.-++-+|++|||.|...= +| ...|....+ ..+|.+++-||+|.++.+- --.++..++-.+ .
T Consensus 67 ~~~~~a~~~ilvydvt~~---~Sf~~~~~~~~~~~~~~~~~~~piilVgNK~DL~~~r~-v~~~e~~~~a~~-------~ 135 (164)
T cd04139 67 NYHRSGEGFLLVFSITDM---ESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQ-VSSEEAANLARQ-------W 135 (164)
T ss_pred HHHHHCCEEEEEEECCCH---HHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHCCC-CCHHHHHHHHHH-------C
T ss_conf 988637688999977977---88999999999999860878863698733032334177-899999999998-------3
Q ss_pred CHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 4266887886591646742233486413555321024
Q gi|254780233|r 173 DFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 173 d~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
.+|.+.+||++| .|++.+|+.+++.+
T Consensus 136 ~~~~~E~SAk~g-----------~nV~~~F~~l~~~i 161 (164)
T cd04139 136 GVPYVETSAKTR-----------QNVEKAFYDLVREI 161 (164)
T ss_pred CCEEEEECCCCC-----------CCHHHHHHHHHHHH
T ss_conf 998999826879-----------08899999999999
No 171
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.10 E-value=3.3e-09 Score=79.64 Aligned_cols=155 Identities=17% Similarity=0.184 Sum_probs=99.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEE-CCEEEEEECCCCCCCCHHHHH
Q ss_conf 9998546898778899999983961423220000038857798709606467999998-997999972898754079999
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVW-NDVRINIVDTPGHADFGGEVE 100 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~-~~~~iNiiDTPGH~DF~gEVe 100 (624)
|+++|-.+-|||||+.+++...+.+.+.-.. .-|+....+...+.- +..+++|.||+|...|..-..
T Consensus 3 ivllGd~gVGKTsli~r~~~~~~~f~~~y~~------------Tig~~~~~k~~~~~~~~~i~l~iwDtaG~e~~~~l~~ 70 (164)
T cd04101 3 CAVVGDPAVGKTAFVQMFHSNGAVFPKNYLM------------TTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVS 70 (164)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCC------------CCCEEEEEEEEEECCCCEEEEEEEECCCCCCHHHHHH
T ss_conf 9999959958899999999788866888888------------6457889999997899799999997999840067899
Q ss_pred HHHHHHCEEEEEEECCCCCCHHHHHHHHHHH---HCCCCEEEEEECCCCCCCCHHHH-HHHHHHHHHHCCCCHHHCCHHH
Q ss_conf 9987421789999768788647899999999---72997899997543667402568-9999988862267301104266
Q gi|254780233|r 101 RILCMVESVVVLVDAAEGPMPQTKFVVGKAL---KIGLRPIVVVNKVDRSDARADEV-INEVFDLFSALDATDAQLDFPI 176 (624)
Q Consensus 101 r~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~---~~~l~~IvvINKiDr~~a~~~~v-~~ei~dlf~~l~a~de~ld~Pv 176 (624)
.-++-+|+++||-|..+=--=+--.-|..-. ..+.|.|++-||+|..+.+ +| .++..++-. +..+|.
T Consensus 71 ~~~~~a~~~ilvydit~~~Sf~~~~~w~~~i~~~~~~~p~ilVgNK~DL~~~r--~V~~~e~~~~a~-------~~~~~~ 141 (164)
T cd04101 71 NYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKA--EVTDAQAQAFAQ-------ANQLKF 141 (164)
T ss_pred HHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC--CCCHHHHHHHHH-------HCCCEE
T ss_conf 99764268999970774668999999999999766898689998722445245--569999999999-------889989
Q ss_pred HHHHHHCCEECCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 88788659164674223348641355532102
Q gi|254780233|r 177 LYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDH 208 (624)
Q Consensus 177 ~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~ 208 (624)
+.+||++| .|+..+|+.|...
T Consensus 142 ~E~SAk~g-----------~nV~e~F~~lar~ 162 (164)
T cd04101 142 FKTSALRG-----------VGYEEPFESLARA 162 (164)
T ss_pred EEECCCCC-----------CCHHHHHHHHHHH
T ss_conf 99866889-----------0989999999998
No 172
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.10 E-value=1.2e-09 Score=82.56 Aligned_cols=151 Identities=18% Similarity=0.195 Sum_probs=96.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHHH
Q ss_conf 99985468987788999999839614232200000388577987096064679999989979999728987540799999
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVER 101 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVer 101 (624)
|+++|..+.|||+|+.+++. +.+...-.. + =|+...++...+.-+..+++|.||+|...|..-...
T Consensus 3 ivl~Gd~~vGKTsli~r~~~--~~f~~~~~~--T----------ig~~~~~k~~~~~~~~~~l~iwDtaG~e~~~~~~~~ 68 (161)
T cd04113 3 FIIIGSSGTGKSCLLHRFVE--NKFKEDSQH--T----------IGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRS 68 (161)
T ss_pred EEEECCCCCCHHHHHHHHHH--CCCCCCCCC--C----------CCEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHH
T ss_conf 99999499679999999972--989998799--7----------645789999999999999999989997012267899
Q ss_pred HHHHHCEEEEEEECCCCCCHHHH---HHHHH-HHH---CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCH
Q ss_conf 98742178999976878864789---99999-997---299789999754366740256899999888622673011042
Q gi|254780233|r 102 ILCMVESVVVLVDAAEGPMPQTK---FVVGK-ALK---IGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDF 174 (624)
Q Consensus 102 ~l~~~DgaiLvVdA~eGv~~QT~---~vl~~-A~~---~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~ 174 (624)
-++-+|+++||.|..+- ++- .-|.. ... .++|.+++-||+|..+.|.- -.++...+-. ...+
T Consensus 69 ~~~~a~~~ilvydit~~---~Sf~~~~~w~~~i~~~~~~~~~iilVgNK~Dl~~~r~V-~~~e~~~~a~-------~~~~ 137 (161)
T cd04113 69 YYRGAAGALLVYDITNR---TSFEALPTWLSDARALASPNIVVILVGNKSDLADQREV-TFLEASRFAQ-------ENGL 137 (161)
T ss_pred HHHCCCEEEEECCCCCH---HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHCCCC-CHHHHHHHHH-------HCCC
T ss_conf 84057778995368988---99999999999999867999649860343440003788-9999999999-------8599
Q ss_pred HHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 6688788659164674223348641355532102
Q gi|254780233|r 175 PILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDH 208 (624)
Q Consensus 175 Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~ 208 (624)
|.+.+||++| .|++.+|+.+++.
T Consensus 138 ~~~E~SAk~~-----------~nV~e~F~~la~~ 160 (161)
T cd04113 138 LFLETSALTG-----------ENVEEAFLKCARS 160 (161)
T ss_pred EEEEECCCCC-----------CCHHHHHHHHHHH
T ss_conf 7999741569-----------0589999999970
No 173
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.10 E-value=1.7e-09 Score=81.52 Aligned_cols=154 Identities=16% Similarity=0.197 Sum_probs=98.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHHH
Q ss_conf 99985468987788999999839614232200000388577987096064679999989979999728987540799999
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVER 101 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVer 101 (624)
|+++|-.+-|||+|+-+++. |.+...-.. + =|+....+...+.-+..+++|.||+|...|..=...
T Consensus 3 ivlvGd~~VGKTsli~r~~~--~~f~~~~~~--T----------ig~~~~~~~~~~~~~~v~l~iwDtaGqe~~~~l~~~ 68 (166)
T cd00877 3 LVLVGDGGTGKTTFVKRHLT--GEFEKKYVA--T----------LGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDG 68 (166)
T ss_pred EEEECCCCCCHHHHHHHHHH--CCCCCCCCC--C----------CCEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHH
T ss_conf 99999999888999999983--999998687--3----------255679999999997999999975787156668788
Q ss_pred HHHHHCEEEEEEECCCCCCHHHHHHHHHHH---HCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHH
Q ss_conf 987421789999768788647899999999---72997899997543667402568999998886226730110426688
Q gi|254780233|r 102 ILCMVESVVVLVDAAEGPMPQTKFVVGKAL---KIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFPILY 178 (624)
Q Consensus 102 ~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~---~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~Pv~~ 178 (624)
-.+-+||+|||.|.++=---+.-.-|..-+ .-++|+|++-||+|..+.+. ..+..+... ...++.+.
T Consensus 69 y~~~a~~~ilvyDvt~~~Sf~~v~~w~~~i~~~~~~~piilVgNK~Dl~~~~~---~~~~~~~~~-------~~~~~~~E 138 (166)
T cd00877 69 YYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKV---KAKQITFHR-------KKNLQYYE 138 (166)
T ss_pred HHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC---CHHHHHHHH-------HCCCEEEE
T ss_conf 74006579984378988899999999999998689998999998621750366---799999999-------78998999
Q ss_pred HHHHCCEECCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 78865916467422334864135553210245
Q gi|254780233|r 179 GSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVP 210 (624)
Q Consensus 179 ~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP 210 (624)
+||++| .+++.+|+.|...+.
T Consensus 139 tSAk~~-----------~nV~e~F~~la~~il 159 (166)
T cd00877 139 ISAKSN-----------YNFEKPFLWLARKLL 159 (166)
T ss_pred ECCCCC-----------CCHHHHHHHHHHHHH
T ss_conf 845899-----------098999999999984
No 174
>PTZ00132 GTP-binding nuclear protein; Provisional
Probab=99.09 E-value=8.2e-10 Score=83.61 Aligned_cols=151 Identities=18% Similarity=0.231 Sum_probs=97.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHH
Q ss_conf 49998546898778899999983961423220000038857798709606467999998997999972898754079999
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVE 100 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVe 100 (624)
-|.++|-.+.|||+|+-+++ .|.|...-.. + -|+....+...+.-+..+++|.||+|+..|..-..
T Consensus 8 KIvllGd~~VGKTsLi~r~~--~~~F~~~y~p--T----------ig~d~~~~~~~~~~~~i~l~IwDTaGqe~f~sl~~ 73 (209)
T PTZ00132 8 KLILVGDGGVGKTTFVKRHL--TGEFEKKYIA--T----------LGVEVHPLKFYTNRGKICFNVWDTAGQEKFGGLRD 73 (209)
T ss_pred EEEEECCCCCCHHHHHHHHH--HCCCCCCCCC--C----------CCEEEEEEEEEECCEEEEEEEEECCCCCCCCCCCC
T ss_conf 99999999967899999997--1996998777--6----------02798999999999999999998999744556651
Q ss_pred HHHHHHCEEEEEEECCCCCCHHHH---HHHHHHHH---CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCH
Q ss_conf 998742178999976878864789---99999997---299789999754366740256899999888622673011042
Q gi|254780233|r 101 RILCMVESVVVLVDAAEGPMPQTK---FVVGKALK---IGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDF 174 (624)
Q Consensus 101 r~l~~~DgaiLvVdA~eGv~~QT~---~vl~~A~~---~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~ 174 (624)
.-.+-++|++||.|.+.= +|- ..|...+. .++|.|++-||+|.++.. |..+-.. |. ....+
T Consensus 74 ~yyr~a~~~ilVfDit~~---~SF~~l~~W~~ei~~~~~~ipivLVGNK~DL~~r~---V~~~~~~-~a------~~~~~ 140 (209)
T PTZ00132 74 GYYIKGQCAIIMFDVTSR---ITYKNVPNWHRDITRVCENIPIVLVGNKVDVKDRQ---VKAKQIT-FH------RKKNL 140 (209)
T ss_pred HHHCCCCEEEEEECCCCH---HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC---CCHHHHH-HH------HHCCC
T ss_conf 442489889998437887---89999999999999868998789997623224135---5799999-99------98799
Q ss_pred HHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 66887886591646742233486413555321024
Q gi|254780233|r 175 PILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 175 Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
+.+.+|||+| .+++.+|+.+...+
T Consensus 141 ~f~EtSAKtg-----------~NV~e~F~~Lar~i 164 (209)
T PTZ00132 141 QYYDISAKSN-----------YNFEKPFLWLARRL 164 (209)
T ss_pred EEEEEECCCC-----------CCHHHHHHHHHHHH
T ss_conf 8999726899-----------39799999999998
No 175
>TIGR00437 feoB ferrous iron transport protein B; InterPro: IPR003373 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent .; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=99.09 E-value=1.1e-10 Score=89.42 Aligned_cols=137 Identities=31% Similarity=0.443 Sum_probs=100.0
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCC---CHH---HHHH-
Q ss_conf 898778899999983961423220000038857798709606467999998997999972898754---079---9999-
Q gi|254780233|r 29 DHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHAD---FGG---EVER- 101 (624)
Q Consensus 29 DhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~D---F~g---EVer- 101 (624)
--|||||--+| ||. +..|.+.- |.|+--+...+.+++++|.|||+||=-+ |+| +|+|
T Consensus 4 NVGKStlFN~L---TG~---~~~vGNwP----------G~TVek~eg~l~~~g~~i~ivDLPG~YSL~~~S~~dE~v~~d 67 (733)
T TIGR00437 4 NVGKSTLFNAL---TGA---NQKVGNWP----------GVTVEKKEGKLKFQGEDIEIVDLPGIYSLTTFSGLDEKVARD 67 (733)
T ss_pred CCHHHHHHHHH---HCC---CEEEEECC----------CCEEEEEEEEEEECCEEEEEEECCCCCCCCCCCCCHHHHHHH
T ss_conf 81589999874---158---70787358----------870787788975246278998448730058998742799989
Q ss_pred -HHH-HHCEEEEEEECCCCCCHHHHHHHHHH---HHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHH
Q ss_conf -987-42178999976878864789999999---9729978999975436674025689999988862267301104266
Q gi|254780233|r 102 -ILC-MVESVVVLVDAAEGPMPQTKFVVGKA---LKIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFPI 176 (624)
Q Consensus 102 -~l~-~~DgaiLvVdA~eGv~~QT~~vl~~A---~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~Pv 176 (624)
.++ -.|-+|-||||. +=+|.|... ++.|+|.|+++|++|- |+- +-..++.++=++.|-.||
T Consensus 68 yl~~e~~DLv~nVVDA~-----nLERnL~LTLQL~E~G~p~i~~LN~~De--A~k-------~GI~Id~~~Lee~LGvPV 133 (733)
T TIGR00437 68 YLLNEKPDLVVNVVDAS-----NLERNLYLTLQLLELGIPMILALNLVDE--AEK-------KGIRIDEEKLEERLGVPV 133 (733)
T ss_pred HHHCCCCCEEEEEECHH-----HHHHHHHHHHHHHHHCCHHHHHHHHHHH--HHH-------CCCEECHHHHHHHCCCCE
T ss_conf 97538996799972566-----7778999999999716258568726789--977-------296312577754338652
Q ss_pred HHHHHHCCEECCCCCCCCCCCCHHHHHHHH
Q ss_conf 887886591646742233486413555321
Q gi|254780233|r 177 LYGSGRFGWMSDSSDGSRDQGMVPLLNLIV 206 (624)
Q Consensus 177 ~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii 206 (624)
+..||..| .|++.|.++|.
T Consensus 134 v~~~A~~g-----------~G~~~L~~~i~ 152 (733)
T TIGR00437 134 VPTSATEG-----------RGIEELKDAIR 152 (733)
T ss_pred EEEEEEEC-----------CCHHHHHHHHH
T ss_conf 56532105-----------77899999999
No 176
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.09 E-value=2.8e-09 Score=80.09 Aligned_cols=119 Identities=22% Similarity=0.263 Sum_probs=83.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHHH
Q ss_conf 99985468987788999999839614232200000388577987096064679999989979999728987540799999
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVER 101 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVer 101 (624)
|.++|=-++|||||..+|.. +.+.. .. --|+--....+.|++.++++.|.+|+..|..--.+
T Consensus 2 IlilGLd~aGKTTil~~l~~--~~~~~--~~--------------~PT~Gf~~~~i~~~~~~l~~wDlgGq~~~R~~W~~ 63 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSS--ERSLE--SV--------------VPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKR 63 (164)
T ss_pred EEEECCCCCCHHHHHHHHHC--CCCCC--CC--------------CCCCCCCEEEEEECCEEEEEEECCCHHHHHHHHHH
T ss_conf 99996799989999999816--99876--53--------------56327746999989999999853752888656998
Q ss_pred HHHHHCEEEEEEECCCC-CCHHHHHHHHHHHH--CCCCEEEEEECCCCCCCCHHHHHHHH
Q ss_conf 98742178999976878-86478999999997--29978999975436674025689999
Q gi|254780233|r 102 ILCMVESVVVLVDAAEG-PMPQTKFVVGKALK--IGLRPIVVVNKVDRSDARADEVINEV 158 (624)
Q Consensus 102 ~l~~~DgaiLvVdA~eG-v~~QT~~vl~~A~~--~~l~~IvvINKiDr~~a~~~~v~~ei 158 (624)
-..-+||+++|||+++= =+...+..+.+.++ .++|.+|+-||.|.|+|....-+.+.
T Consensus 64 Y~~~~~gIIfVVDssD~~rl~eak~~L~~ll~~~~~~PlLIlaNKqDl~~a~s~~ei~~~ 123 (164)
T cd04162 64 YLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKE 123 (164)
T ss_pred HHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHH
T ss_conf 711775899999568888999999999999708799869999863243369999999986
No 177
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.09 E-value=8.3e-10 Score=83.58 Aligned_cols=159 Identities=18% Similarity=0.241 Sum_probs=101.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHH
Q ss_conf 43149998546898778899999983961423220000038857798709606467999998997999972898754079
Q gi|254780233|r 18 QIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGG 97 (624)
Q Consensus 18 ~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~g 97 (624)
.+=-|+++|-.+-|||+|+.++. .+.|...-.. + -|+....+...+.-+..+++|.||+|...|..
T Consensus 5 ~~~KIvlvGd~~VGKTSli~r~~--~~~F~~~~~~--T----------ig~d~~~k~v~i~~~~v~l~iwDtaGqe~~~~ 70 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFA--DNTFSGSYIT--T----------IGVDFKIRTVEINGERVKLQIWDTAGQERFRT 70 (199)
T ss_pred EEEEEEEECCCCCCHHHHHHHHH--CCCCCCCCCC--C----------CCEEEEEEEEEECCEEEEEEEEECCCCCCCCC
T ss_conf 57799999979988899999995--0999998689--7----------55587899999999999999998999812353
Q ss_pred HHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHH---CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCH
Q ss_conf 99999874217899997687886478999999997---299789999754366740256899999888622673011042
Q gi|254780233|r 98 EVERILCMVESVVVLVDAAEGPMPQTKFVVGKALK---IGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDF 174 (624)
Q Consensus 98 EVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~---~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~ 174 (624)
-.....+-+|++|||.|...----.--.-|..-+. ..+|+|++-||+|.+..+.-. .++..++- .+..+
T Consensus 71 l~~~~~~~a~~~ilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~ilVGNK~Dl~~~r~v~-~~e~~~~a-------~~~~~ 142 (199)
T cd04110 71 ITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVE-TEDAYKFA-------GQMGI 142 (199)
T ss_pred CHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHCCCC-HHHHHHHH-------HHCCC
T ss_conf 52666424654238971798899999999999999759987579998855447546999-99999999-------98699
Q ss_pred HHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 66887886591646742233486413555321024
Q gi|254780233|r 175 PILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 175 Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
|.+.+||++| .|++.+|+.|++.+
T Consensus 143 ~f~E~SAktg-----------~nV~e~F~~i~~~i 166 (199)
T cd04110 143 SLFETSAKEN-----------INVEEMFNCITELV 166 (199)
T ss_pred EEEEEECCCC-----------CCHHHHHHHHHHHH
T ss_conf 7999868999-----------29899999999999
No 178
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.09 E-value=1.6e-09 Score=81.76 Aligned_cols=154 Identities=14% Similarity=0.119 Sum_probs=100.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHH
Q ss_conf 14999854689877889999998396142322000003885779870960646799999899799997289875407999
Q gi|254780233|r 20 RNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEV 99 (624)
Q Consensus 20 RNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEV 99 (624)
=.|.++|-..-|||+|+.+++ .|.+...-.. .-|+...++...+.-+..++.|.||+|+-.|.+-.
T Consensus 7 ~KivllGd~~VGKTsl~~r~~--~~~f~~~y~~------------Tig~~~~~k~~~~~~~~v~l~iwDtaGqe~f~~l~ 72 (189)
T cd04121 7 LKFLLVGDSDVGKGEILASLQ--DGSTESPYGY------------NMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIF 72 (189)
T ss_pred EEEEEECCCCCCHHHHHHHHH--CCCCCCCCCC------------CCCEEEEEEEEEECCEEEEEEEECCCCCCCHHHHH
T ss_conf 999999989978999999997--4997898687------------65379899999999999999998178862211678
Q ss_pred HHHHHHHCEEEEEEECCCCCCHHHH---HHHHHHH---HCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCC
Q ss_conf 9998742178999976878864789---9999999---729978999975436674025689999988862267301104
Q gi|254780233|r 100 ERILCMVESVVVLVDAAEGPMPQTK---FVVGKAL---KIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLD 173 (624)
Q Consensus 100 er~l~~~DgaiLvVdA~eGv~~QT~---~vl~~A~---~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld 173 (624)
..-.+-++++|||-|.+.= +|- ..|..-+ .-++|.|++-||+|++..|. --.++..++-. ...
T Consensus 73 ~~y~r~a~~~ilvyDvt~~---~Sf~~l~~w~~~i~~~~~~~p~iLVGNK~DL~~~r~-V~~ee~~~~A~-------~~~ 141 (189)
T cd04121 73 RSYSRGAQGIILVYDITNR---WSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQ-VATEQAQAYAE-------RNG 141 (189)
T ss_pred HHHHHHCCCEEEEECCCCH---HHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHCCC-CCHHHHHHHHH-------HCC
T ss_conf 9886633704898227988---999999999999999768987899613255033088-99999999999-------889
Q ss_pred HHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 266887886591646742233486413555321024
Q gi|254780233|r 174 FPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 174 ~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
+|.+.+||+.| .++..+|+.+...+
T Consensus 142 ~~f~EtSAk~g-----------~nV~e~F~~l~~~i 166 (189)
T cd04121 142 MTFFEVSPLCN-----------FNITESFTELARIV 166 (189)
T ss_pred CEEEEECCCCC-----------CCHHHHHHHHHHHH
T ss_conf 99999600679-----------39899999999999
No 179
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.09 E-value=1.7e-09 Score=81.63 Aligned_cols=154 Identities=14% Similarity=0.185 Sum_probs=97.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHHH
Q ss_conf 99985468987788999999839614232200000388577987096064679999989979999728987540799999
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVER 101 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVer 101 (624)
|+++|...-|||+|+-+.+. +.|...- ..++ | ....+...+....++++|.||+|...|..-...
T Consensus 2 IvvlGd~~VGKTSLi~rf~~--~~F~~~y--~~Ti----------~-~~~~k~~~v~~~~v~l~i~DtaG~e~~~~l~~~ 66 (198)
T cd04147 2 LVFMGAAGVGKTALIQRFLY--DTFEPKY--RRTV----------E-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKL 66 (198)
T ss_pred EEEECCCCCCHHHHHHHHHH--CCCCCCC--CCCH----------H-HEEEEEEEECCEEEEEEEEECCCCCCCHHHHHH
T ss_conf 89999899779999999985--9899888--8872----------5-418899998997999999978775130145555
Q ss_pred HHHHHCEEEEEEECCCCCCHHHH---HHHHH-HHH----CCCCEEEEEECCCC-CCCCHHHHHHHHHHHHHHCCCCHHHC
Q ss_conf 98742178999976878864789---99999-997----29978999975436-67402568999998886226730110
Q gi|254780233|r 102 ILCMVESVVVLVDAAEGPMPQTK---FVVGK-ALK----IGLRPIVVVNKVDR-SDARADEVINEVFDLFSALDATDAQL 172 (624)
Q Consensus 102 ~l~~~DgaiLvVdA~eGv~~QT~---~vl~~-A~~----~~l~~IvvINKiDr-~~a~~~~v~~ei~dlf~~l~a~de~l 172 (624)
-++-+|++|||-|-.+= .|- .-|.. ..+ ..+|.|++-||+|+ ++.|.- -.++...+. . ...
T Consensus 67 ~~r~a~~~ilVyDit~~---~Sf~~l~~w~~~i~~~~~~~~ipiilVGNK~Dll~~~R~V-~~~e~~~~a-~-----~~~ 136 (198)
T cd04147 67 SIQNSDAFALVYAVDDP---ESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQV-PAKDALSTV-E-----LDW 136 (198)
T ss_pred HCCCCCEEEEEEECCCH---HHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCC-CHHHHHHHH-H-----HCC
T ss_conf 41588668999616977---9999999999999996288898289998787650104784-899999999-8-----559
Q ss_pred CHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf 426688788659164674223348641355532102454
Q gi|254780233|r 173 DFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPP 211 (624)
Q Consensus 173 d~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~ 211 (624)
.++.+.+||++| .|++.+|+.++..+--
T Consensus 137 ~~~f~EtSAktg-----------~nV~e~F~~l~r~i~~ 164 (198)
T cd04147 137 NCGFVETSAKDN-----------ENVLEVFKELLRQANL 164 (198)
T ss_pred CCEEEECCCCCC-----------CCHHHHHHHHHHHHCC
T ss_conf 978998779999-----------4989999999999773
No 180
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.09 E-value=1.6e-09 Score=81.75 Aligned_cols=156 Identities=16% Similarity=0.188 Sum_probs=98.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHHH
Q ss_conf 99985468987788999999839614232200000388577987096064679999989979999728987540799999
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVER 101 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVer 101 (624)
|.++|-.+-|||+|+.++. .+.|...-.. + -|+....+...+.-+..+++|.||+|+..|..-...
T Consensus 3 IvllGd~gVGKTsLi~rf~--~~~F~~~y~~--T----------ig~d~~~k~i~~~~~~v~l~IWDTaGqe~f~sl~~~ 68 (202)
T cd04120 3 VIIIGSRGVGKTSLMRRFT--DDTFCEACKS--G----------VGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSA 68 (202)
T ss_pred EEEECCCCCCHHHHHHHHH--CCCCCCCCCC--C----------CCEEEEEEEEEECCEEEEEEEEECCCCCCCCCCHHH
T ss_conf 9999979972999999995--4999998799--7----------646889999999999999999979886124523578
Q ss_pred HHHHHCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHH
Q ss_conf 9874217899997687886478999999997----299789999754366740256899999888622673011042668
Q gi|254780233|r 102 ILCMVESVVVLVDAAEGPMPQTKFVVGKALK----IGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFPIL 177 (624)
Q Consensus 102 ~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~----~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~Pv~ 177 (624)
-.+-++|++||-|.+.---=+.-.-|.+-++ .+.|.|+|-||+|..+.|-- -.++...+-.++. .++.+
T Consensus 69 yyr~a~~~ilVyDit~~~SF~~l~~W~~~i~~~~~~~~~iiLVGNK~DL~~~R~V-s~~e~~~~A~~~~------~~~f~ 141 (202)
T cd04120 69 YYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREI-SRQQGEKFAQQIT------GMRFC 141 (202)
T ss_pred HHHHHCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHCCC-CHHHHHHHHHHCC------CCEEE
T ss_conf 8764144589985688899999999999999746688718987653650531787-9999999998279------98899
Q ss_pred HHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 87886591646742233486413555321024
Q gi|254780233|r 178 YGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 178 ~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
.+||++| .|++.+|+.|++.+
T Consensus 142 EtSAkt~-----------~nV~e~F~~l~~~i 162 (202)
T cd04120 142 EASAKDN-----------FNVDEIFLKLVDDI 162 (202)
T ss_pred ECCCCCC-----------CCHHHHHHHHHHHH
T ss_conf 9258999-----------69899999999999
No 181
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.08 E-value=2e-09 Score=81.08 Aligned_cols=151 Identities=19% Similarity=0.233 Sum_probs=96.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHHH
Q ss_conf 99985468987788999999839614232200000388577987096064679999989979999728987540799999
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVER 101 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVer 101 (624)
|+++|.-+.|||+|+-+++. |.+...- ..++-|. ..+...+.-+.++++|.||+|+.+|..-...
T Consensus 3 iv~vGd~~vGKTsli~r~~~--~~f~~~y--~~Ti~~~-----------~~k~i~~~~~~~~l~iwDt~G~e~~~~~~~~ 67 (164)
T smart00173 3 LVVLGSGGVGKSALTIQFVQ--GHFVDDY--DPTIEDS-----------YRKQIEIDGEVCLLDILDTAGQEEFSAMRDQ 67 (164)
T ss_pred EEEECCCCCCHHHHHHHHHH--CCCCCCC--CCCEEEE-----------EEEEEEECCEEEEEEEEECCCCCCHHHHHHH
T ss_conf 99999999789999999972--9799877--8813678-----------9999999999999999989997103567777
Q ss_pred HHHHHCEEEEEEECCCCCCHHHH---HHH-HHHHH----CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCC
Q ss_conf 98742178999976878864789---999-99997----29978999975436674025689999988862267301104
Q gi|254780233|r 102 ILCMVESVVVLVDAAEGPMPQTK---FVV-GKALK----IGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLD 173 (624)
Q Consensus 102 ~l~~~DgaiLvVdA~eGv~~QT~---~vl-~~A~~----~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld 173 (624)
-++-+|++|||.|..+ +++- .-| ....+ .++|.|++-||+|.++.+.- -.++..++-.+ +.
T Consensus 68 ~~~~a~~~ilvydi~~---~~Sf~~~~~~~~~i~~~~~~~~~piilvgnK~DL~~~r~V-~~~e~~~~a~~-------~~ 136 (164)
T smart00173 68 YMRTGEGFLLVYSITD---RQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVV-STEEGKELARQ-------WG 136 (164)
T ss_pred HCCCCCEEEEEEECCC---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHCCCC-CHHHHHHHHHH-------CC
T ss_conf 5379877999830798---8999999999999998618888866877753463011789-99999999998-------39
Q ss_pred HHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 266887886591646742233486413555321024
Q gi|254780233|r 174 FPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 174 ~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
.|.+.+||++| .|++.+|+.+++.+
T Consensus 137 ~~~~E~SAk~g-----------~nV~~~F~~l~~~i 161 (164)
T smart00173 137 CPFLETSAKER-----------VNVDEAFYDLVREI 161 (164)
T ss_pred CEEEEECCCCC-----------CCHHHHHHHHHHHH
T ss_conf 98999858988-----------17899999999999
No 182
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.07 E-value=2.4e-09 Score=80.59 Aligned_cols=143 Identities=23% Similarity=0.253 Sum_probs=92.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHHH
Q ss_conf 99985468987788999999839614232200000388577987096064679999989979999728987540799999
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVER 101 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVer 101 (624)
|.|+|=-.+|||||.-+|. .+.. ..+ -=|+-.....+.++++++++.|..|+.-|-.--..
T Consensus 2 ililGLd~aGKTTil~~l~--~~~~---~~~--------------~PT~G~~~~~~~~~~~~l~~~DlgG~~~~R~lW~~ 62 (167)
T cd04161 2 LLTVGLDNAGKTTLVSALQ--GEIP---KKV--------------APTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVN 62 (167)
T ss_pred EEEEEECCCCHHHHHHHHC--CCCC---CCC--------------CCCCCCCEEEEEECCEEEEEEECCCCHHHHHHHHH
T ss_conf 8999008998899999982--8998---765--------------08777317999989999999989987788899998
Q ss_pred HHHHHCEEEEEEECCCC-CCHHHHHHHHHHHH----CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHH
Q ss_conf 98742178999976878-86478999999997----29978999975436674025689999988862267301104266
Q gi|254780233|r 102 ILCMVESVVVLVDAAEG-PMPQTKFVVGKALK----IGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFPI 176 (624)
Q Consensus 102 ~l~~~DgaiLvVdA~eG-v~~QT~~vl~~A~~----~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~Pv 176 (624)
=..-++|.|.|||+++- -+...+..+...+. .++|.+|+.||.|.|+|-...-+.+.++|- ++ .+..+-.+-+
T Consensus 63 Y~~~~~gIIfVVDssD~~rl~eak~~L~~lL~~~~l~~~PiLIlaNKqDl~~a~~~~ei~~~L~L~-~l-~~~~~~~~~I 140 (167)
T cd04161 63 YYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLE-KL-VNENKSLCHI 140 (167)
T ss_pred HCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCCH-HH-CCCCCCEEEE
T ss_conf 734776579998557588999999999999658877899599998865761589999999881974-24-0899863799
Q ss_pred HHHHHHCCE
Q ss_conf 887886591
Q gi|254780233|r 177 LYGSGRFGW 185 (624)
Q Consensus 177 ~~~Sa~~G~ 185 (624)
..|||++|.
T Consensus 141 ~~csA~tG~ 149 (167)
T cd04161 141 EPCSAIEGL 149 (167)
T ss_pred EECEEECCC
T ss_conf 957644488
No 183
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.07 E-value=2.4e-09 Score=80.60 Aligned_cols=156 Identities=20% Similarity=0.273 Sum_probs=97.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHH
Q ss_conf 14999854689877889999998396142322000003885779870960646799999899799997289875407999
Q gi|254780233|r 20 RNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEV 99 (624)
Q Consensus 20 RNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEV 99 (624)
|-|+++|-.+-|||+|+-+++. +.+...- ..++ |-. .++...+.-..+.++|.||+|+.+|..-.
T Consensus 2 ~KIvlvGd~~VGKTsli~r~~~--~~f~~~y--~~Ti----------~~~-~~k~i~~~~~~~~l~iwDtaG~e~~~~~~ 66 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVE--GHFVESY--YPTI----------ENT-FSKIIRYKGQDYHLEIVDTAGQDEYSILP 66 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHC--CCCCCCC--CCCC----------CCC-CCEEEEECCEEEEEEEEECCCCCCCCHHH
T ss_conf 8899999899889999999970--9789985--8812----------441-13799999999999999899870100667
Q ss_pred HHHHHHHCEEEEEEECCCCCCH-HHHHHHHHHH----HCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCH
Q ss_conf 9998742178999976878864-7899999999----7299789999754366740256899999888622673011042
Q gi|254780233|r 100 ERILCMVESVVVLVDAAEGPMP-QTKFVVGKAL----KIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDF 174 (624)
Q Consensus 100 er~l~~~DgaiLvVdA~eGv~~-QT~~vl~~A~----~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~ 174 (624)
..-.+-++|++||.|..+=--- .-+..|.+.. ..++|.|++-||+|.+..|.- -.++..++-. ++.+
T Consensus 67 ~~~~~~a~~~ilvydvt~~~Sf~~~~~~~~~~~~~~~~~~~piilVgNK~DL~~~r~V-~~~e~~~~a~-------~~~~ 138 (180)
T cd04137 67 QKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQV-STEEGKELAE-------SWGA 138 (180)
T ss_pred HHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHCCC-CHHHHHHHHH-------HCCC
T ss_conf 9998635578999743887889999999999999758888867977653462440788-9999999999-------8399
Q ss_pred HHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 66887886591646742233486413555321024
Q gi|254780233|r 175 PILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 175 Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
+.+.+||++| .|++.+|+.+++.+
T Consensus 139 ~f~EtSAk~g-----------~nV~e~F~~l~~~i 162 (180)
T cd04137 139 AFLESSAREN-----------ENVEEAFELLIEEI 162 (180)
T ss_pred EEEEECCCCC-----------CCHHHHHHHHHHHH
T ss_conf 8999776889-----------19899999999999
No 184
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.07 E-value=2e-09 Score=81.05 Aligned_cols=156 Identities=15% Similarity=0.181 Sum_probs=94.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHH
Q ss_conf 49998546898778899999983961423220000038857798709606467999998997999972898754079999
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVE 100 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVe 100 (624)
-|+++|..+.|||||+.+++. |.+...-. + .-|+....+...+.-+..+++|.||+|...|..-..
T Consensus 5 Kiv~iGd~~VGKTsli~r~~~--~~f~~~~~---------~---Tig~~~~~k~i~~~~~~~~l~iwDtaG~e~~~~~~~ 70 (165)
T cd01868 5 KIVLIGDSGVGKSNLLSRFTR--NEFNLDSK---------S---TIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITS 70 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHH--CCCCCCCC---------C---CCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHH
T ss_conf 999999999789999999972--98999889---------8---744787899999999999999998999721267899
Q ss_pred HHHHHHCEEEEEEECCCCCCHHHHHHHHHHH-H---CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHH
Q ss_conf 9987421789999768788647899999999-7---29978999975436674025689999988862267301104266
Q gi|254780233|r 101 RILCMVESVVVLVDAAEGPMPQTKFVVGKAL-K---IGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFPI 176 (624)
Q Consensus 101 r~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~-~---~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~Pv 176 (624)
.-.+-+|+++||.|..+----+--.-|..-+ + .++|.+++-||+|.++.|.- -.++..++-. +..++.
T Consensus 71 ~~~~~a~~~ilvydit~~~Sf~~i~~w~~~i~~~~~~~~~iilVgnK~DL~~~r~V-s~~e~~~~a~-------~~~~~~ 142 (165)
T cd01868 71 AYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAV-PTEEAKAFAE-------KNGLSF 142 (165)
T ss_pred HHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHCCC-CHHHHHHHHH-------HCCCEE
T ss_conf 87332051489862698899999999999999855577359870234786885788-8999999999-------859979
Q ss_pred HHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 887886591646742233486413555321024
Q gi|254780233|r 177 LYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 177 ~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
+.+||++| .|+..+|+.|++.+
T Consensus 143 ~E~SAk~g-----------~nV~e~F~~l~~~i 164 (165)
T cd01868 143 IETSALDG-----------TNVEEAFKQLLTEI 164 (165)
T ss_pred EEECCCCC-----------CCHHHHHHHHHHHH
T ss_conf 99678889-----------29899999999986
No 185
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.07 E-value=2.4e-09 Score=80.58 Aligned_cols=151 Identities=16% Similarity=0.222 Sum_probs=96.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHH
Q ss_conf 49998546898778899999983961423220000038857798709606467999998997999972898754079999
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVE 100 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVe 100 (624)
.|+++|-.+-|||+|+-+++. |.+...-. .++ |.+ ..+...+.-+.++++|.||+|+.+|..-..
T Consensus 3 KvvlvGd~~VGKTsli~r~~~--~~F~~~y~--~Ti----------~~~-~~k~~~i~~~~~~l~iwDtaG~e~~~~l~~ 67 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQ--NHFVDEYD--PTI----------EDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRD 67 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHH--CCCCCCCC--CCC----------CCE-EEEEEEECCEEEEEEEEECCCCCCCCHHHH
T ss_conf 999989999889999999983--92887568--855----------527-999999999999999997998601114789
Q ss_pred HHHHHHCEEEEEEECCCCCCHHHH---HHHH-HHHH----CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHC
Q ss_conf 998742178999976878864789---9999-9997----2997899997543667402568999998886226730110
Q gi|254780233|r 101 RILCMVESVVVLVDAAEGPMPQTK---FVVG-KALK----IGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQL 172 (624)
Q Consensus 101 r~l~~~DgaiLvVdA~eGv~~QT~---~vl~-~A~~----~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~l 172 (624)
.-++-+|++|||-|..+= ++- .-|. ...+ ..+|.|++-||+|.++-.. -.++..++-.+ +
T Consensus 68 ~~~~~a~~~ilvydvt~~---~Sf~~v~~w~~~i~~~~~~~~~piilVgNK~Dl~~r~V--~~~e~~~~a~~-------~ 135 (162)
T cd04138 68 QYMRTGEGFLCVFAINSR---KSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTV--SSRQGQDLAKS-------Y 135 (162)
T ss_pred HHHCCCCEEEEEEECCCH---HHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCHHHCCC--CHHHHHHHHHH-------C
T ss_conf 871578779999617988---99998999999999854888854999976535645558--89999999998-------0
Q ss_pred CHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 4266887886591646742233486413555321024
Q gi|254780233|r 173 DFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 173 d~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
.+|.+.+||++| .|+..+|+.+++.+
T Consensus 136 ~~~f~E~SAk~~-----------~nV~e~F~~l~~~I 161 (162)
T cd04138 136 GIPYIETSAKTR-----------QGVEEAFYTLVREI 161 (162)
T ss_pred CCEEEEECCCCC-----------CCHHHHHHHHHHHC
T ss_conf 998999738998-----------59899999999963
No 186
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.07 E-value=1e-09 Score=82.97 Aligned_cols=155 Identities=16% Similarity=0.202 Sum_probs=96.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHHH
Q ss_conf 99985468987788999999839614232200000388577987096064679999989979999728987540799999
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVER 101 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVer 101 (624)
|+++|..+.|||+|+.+++. +.+...-.. + -|.....+...+.-+.++++|.||+|...|..-...
T Consensus 3 ivvvGd~~VGKTsli~r~~~--~~f~~~~~~--T----------ig~~~~~k~i~~~~~~~~l~iwDtaG~e~~~~l~~~ 68 (188)
T cd04125 3 VVIIGDYGVGKSSLLKRFTE--DEFSESTKS--T----------IGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNS 68 (188)
T ss_pred EEEECCCCCCHHHHHHHHHH--CCCCCCCCC--C----------CCEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHH
T ss_conf 99999999789999999951--968998688--6----------540357999999999999999989997104578999
Q ss_pred HHHHHCEEEEEEECCCCCCHHHHHHHHH-HHH---CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHH
Q ss_conf 9874217899997687886478999999-997---299789999754366740256899999888622673011042668
Q gi|254780233|r 102 ILCMVESVVVLVDAAEGPMPQTKFVVGK-ALK---IGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFPIL 177 (624)
Q Consensus 102 ~l~~~DgaiLvVdA~eGv~~QT~~vl~~-A~~---~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~Pv~ 177 (624)
.++-+|++|||.|..+=--=+.-.-|.. ..+ ...|+|++-||+|..+.|.- -.++...+- ..++++.+
T Consensus 69 ~~~~a~~~ilvydit~~~Sf~~l~~w~~~i~~~~~~~~~iilvgNK~DL~~~r~V-~~~e~~~~a-------~~~~~~~~ 140 (188)
T cd04125 69 YYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVV-DSNIAKSFC-------DSLNIPFF 140 (188)
T ss_pred HHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHCCCC-CHHHHHHHH-------HHCCCEEE
T ss_conf 8637867999803898789999999999999878986624510013447660679-999999999-------98699899
Q ss_pred HHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 87886591646742233486413555321024
Q gi|254780233|r 178 YGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 178 ~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
.+||++| .|+..+|+.+++.+
T Consensus 141 E~SAktg-----------~nV~e~F~~l~~~i 161 (188)
T cd04125 141 ETSAKQS-----------INVEEAFILLVKLI 161 (188)
T ss_pred EECCCCC-----------CCHHHHHHHHHHHH
T ss_conf 9747889-----------09899999999999
No 187
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.07 E-value=1.2e-09 Score=82.59 Aligned_cols=154 Identities=16% Similarity=0.191 Sum_probs=94.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHHH
Q ss_conf 99985468987788999999839614232200000388577987096064679999989979999728987540799999
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVER 101 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVer 101 (624)
|+++|..+-|||+|+-+++ .+.+...-.. + =|+....+...+.-..++++|.||+|...|..-...
T Consensus 3 ivlvGd~~VGKTsli~r~~--~~~f~~~y~~--T----------ig~d~~~k~~~v~~~~~~l~iwDtaGqe~f~~l~~~ 68 (170)
T cd04108 3 VIVVGDLSVGKTCLINRFC--KDVFDKNYKA--T----------IGVDFEMERFEILGVPFSLQLWDTAGQERFKCIAST 68 (170)
T ss_pred EEEECCCCCCHHHHHHHHH--CCCCCCCCCC--C----------CCEEEEEEEEEECCEEEEEEEEECCCCCCCCCCHHH
T ss_conf 9999989989899999996--3988997256--3----------450589999999999999999989999746644377
Q ss_pred HHHHHCEEEEEEECCCCCCHHHHHHHH-HHHHCC----CCEEEEEECCCCCCCCHHHH-HHHHHHHHHHCCCCHHHCCHH
Q ss_conf 987421789999768788647899999-999729----97899997543667402568-999998886226730110426
Q gi|254780233|r 102 ILCMVESVVVLVDAAEGPMPQTKFVVG-KALKIG----LRPIVVVNKVDRSDARADEV-INEVFDLFSALDATDAQLDFP 175 (624)
Q Consensus 102 ~l~~~DgaiLvVdA~eGv~~QT~~vl~-~A~~~~----l~~IvvINKiDr~~a~~~~v-~~ei~dlf~~l~a~de~ld~P 175 (624)
-.+-+|++|||.|.+.=---+--.-|. .+++.+ .+++++-||+|..+.+-..+ .++..++-. ++..|
T Consensus 69 y~r~a~~~ilvyDvt~~~Sf~~~~~w~~~~~~~~~~~~~~i~LvgNK~DL~~~~~~~~~~~~~~~~a~-------~~~~~ 141 (170)
T cd04108 69 YYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAA-------EMQAE 141 (170)
T ss_pred HHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEEEEHHHHHHHHH-------HCCCE
T ss_conf 73278758999978987899999999999998508999829999984137987557644899999998-------77987
Q ss_pred HHHHHHHCCEECCCCCCCCCCCCHHHHHHHHC
Q ss_conf 68878865916467422334864135553210
Q gi|254780233|r 176 ILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVD 207 (624)
Q Consensus 176 v~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~ 207 (624)
.+.+||++| .|++.+|+.|.+
T Consensus 142 ~~E~SAk~g-----------~nV~e~F~~ia~ 162 (170)
T cd04108 142 YWSVSALSG-----------ENVREFFFRVAA 162 (170)
T ss_pred EEEECCCCC-----------CCHHHHHHHHHH
T ss_conf 999855788-----------187999999999
No 188
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.06 E-value=9.3e-09 Score=76.69 Aligned_cols=125 Identities=20% Similarity=0.262 Sum_probs=78.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHH
Q ss_conf 49998546898778899999983961423220000038857798709606467999998997999972898754079999
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVE 100 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVe 100 (624)
.|-|+|--|+|||||.-+|..... ..++. |. +- ++.........++.+++++|+|||.-+....-
T Consensus 2 tvLl~Gl~~aGKT~Lf~~L~~~~~--------~~T~t-S~--~~----n~~~~~~~~~~~~~~~~lvD~PGH~klR~~~~ 66 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKY--------RSTVT-SI--EP----NVATFILNSEGKGKKFRLVDVPGHPKLRDKLL 66 (203)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC--------CCCCC-CC--CC----CCEEEECCCCCCCCEEEEEECCCCHHHHHHHH
T ss_conf 599990799989999999974998--------88778-88--78----62066402466872799998799688999999
Q ss_pred HHH-HHHCEEEEEEECCCCC--CHHHHHHHHH----HHH--CCCCEEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 998-7421789999768788--6478999999----997--2997899997543667402568999998
Q gi|254780233|r 101 RIL-CMVESVVVLVDAAEGP--MPQTKFVVGK----ALK--IGLRPIVVVNKVDRSDARADEVINEVFD 160 (624)
Q Consensus 101 r~l-~~~DgaiLvVdA~eGv--~~QT~~vl~~----A~~--~~l~~IvvINKiDr~~a~~~~v~~ei~d 160 (624)
+.+ ..+.|.|+||||+.=. ...+...|.. ... .++|++++-||.|.+.|.+...+.+..+
T Consensus 67 ~~~~~~~~gIVfvVDs~~~~~~l~~~Ae~Ly~iL~~~~~~~~~iPvLIacNKqDl~tA~~~~~Ik~~LE 135 (203)
T cd04105 67 ETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLE 135 (203)
T ss_pred HHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHH
T ss_conf 998754989999996887511199999999999862664368998899986614345789999999999
No 189
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.05 E-value=2.4e-09 Score=80.58 Aligned_cols=148 Identities=24% Similarity=0.258 Sum_probs=99.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCC--CCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHH
Q ss_conf 4999854689877889999998396142--32200000388577987096064679999989979999728987540799
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRD--NQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGE 98 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~--~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gE 98 (624)
++||+|--..|||||..+|+.+--+|-. .|..- | .| -..+.-+|+.++|+||-|-.+=...
T Consensus 219 kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTR----D----------vi---ee~i~i~G~pv~l~DTAGiRet~d~ 281 (454)
T COG0486 219 KVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTR----D----------VI---EEDINLNGIPVRLVDTAGIRETDDV 281 (454)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCC----C----------EE---EEEEEECCEEEEEEECCCCCCCCCH
T ss_conf 49998799886799999886678667428999741----0----------37---8999989889999856776667348
Q ss_pred HH-----HHH---HHHCEEEEEEECCCCCC-HHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCH
Q ss_conf 99-----998---74217899997687886-4789999999972997899997543667402568999998886226730
Q gi|254780233|r 99 VE-----RIL---CMVESVVVLVDAAEGPM-PQTKFVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATD 169 (624)
Q Consensus 99 Ve-----r~l---~~~DgaiLvVdA~eGv~-~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~d 169 (624)
|| |+. .-+|.+|+|+||.+... ......+ .+..+.|.++++||.|.......... .+.
T Consensus 282 VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~--~~~~~~~~i~v~NK~DL~~~~~~~~~--------~~~--- 348 (454)
T COG0486 282 VERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE--LLPKKKPIIVVLNKADLVSKIELESE--------KLA--- 348 (454)
T ss_pred HHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHH--HCCCCCCEEEEEECHHCCCCCCCCHH--------HCC---
T ss_conf 99999999999998599899997088777601177887--24368977999960211564321012--------026---
Q ss_pred HHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf 110426688788659164674223348641355532102454
Q gi|254780233|r 170 AQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPP 211 (624)
Q Consensus 170 e~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~ 211 (624)
-..|+++.|+++| .|++.|.++|..++..
T Consensus 349 --~~~~~i~iSa~t~-----------~Gl~~L~~~i~~~~~~ 377 (454)
T COG0486 349 --NGDAIISISAKTG-----------EGLDALREAIKQLFGK 377 (454)
T ss_pred --CCCCEEEEEECCC-----------CCHHHHHHHHHHHHHH
T ss_conf --7882699982576-----------5799999999999863
No 190
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.04 E-value=1.5e-09 Score=81.98 Aligned_cols=154 Identities=21% Similarity=0.258 Sum_probs=96.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHH
Q ss_conf 49998546898778899999983961423220000038857798709606467999998997999972898754079999
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVE 100 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVe 100 (624)
-|+++|-.+.|||+|+.+++. +.+...... .-|+....+...+.-+..+++|.||+|...|..-..
T Consensus 9 KivllGd~~VGKTsli~r~~~--~~f~~~~~~------------Tig~d~~~k~i~~~~~~v~l~iwDtaG~e~~~~l~~ 74 (169)
T cd04114 9 KIVLIGNAGVGKTCLVRRFTQ--GLFPPGQGA------------TIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQ 74 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH--CCCCCCCCC------------CCCEEEEEEEEEECCEEEEEEEEECCCCCCCCCCHH
T ss_conf 999999899799999999985--989998677------------412478999999999999999998999844451557
Q ss_pred HHHHHHCEEEEEEECCCCCCHHHHHHHHHHH-H---CCCCEEEEEECCCCCCCCHHHHH-HHHHHHHHHCCCCHHHCCHH
Q ss_conf 9987421789999768788647899999999-7---29978999975436674025689-99998886226730110426
Q gi|254780233|r 101 RILCMVESVVVLVDAAEGPMPQTKFVVGKAL-K---IGLRPIVVVNKVDRSDARADEVI-NEVFDLFSALDATDAQLDFP 175 (624)
Q Consensus 101 r~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~-~---~~l~~IvvINKiDr~~a~~~~v~-~ei~dlf~~l~a~de~ld~P 175 (624)
.-.+-+|+++||.|...----+.-.-|..-+ + ...|+|++-||+|..+.|- |. ++..+ |. .+..+|
T Consensus 75 ~~~~~a~~~ilvydvt~~~Sf~~l~~w~~~i~~~~~~~~~~ilVGNK~DL~~~r~--v~~~~~~~-~a------~~~~~~ 145 (169)
T cd04114 75 SYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERRE--VSQQRAEE-FS------DAQDMY 145 (169)
T ss_pred HHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHCCC--CCHHHHHH-HH------HHCCCE
T ss_conf 7742366459981489888999999999999986898863897311343454178--89999999-99------988999
Q ss_pred HHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 688788659164674223348641355532102
Q gi|254780233|r 176 ILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDH 208 (624)
Q Consensus 176 v~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~ 208 (624)
.+.+||++| .|+..+|+.|...
T Consensus 146 ~~E~SAktg-----------~nV~e~F~~la~~ 167 (169)
T cd04114 146 YLETSAKES-----------DNVEKLFLDLACR 167 (169)
T ss_pred EEEECCCCC-----------CCHHHHHHHHHHH
T ss_conf 999868988-----------0889999999998
No 191
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.04 E-value=3e-09 Score=79.89 Aligned_cols=155 Identities=17% Similarity=0.191 Sum_probs=97.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHH
Q ss_conf 49998546898778899999983961423220000038857798709606467999998997999972898754079999
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVE 100 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVe 100 (624)
-|+++|..+-|||+|+-+++. |.+...-. .++- ...++...+.-...+++|.||+|+..|..-..
T Consensus 3 KivllGd~~VGKTsli~r~~~--~~f~~~y~--pTi~-----------~~~~k~i~~~~~~~~l~iwDtaG~e~~~~~~~ 67 (163)
T cd04176 3 KVVVLGSGGVGKSALTVQFVS--GTFIEKYD--PTIE-----------DFYRKEIEVDSSPSVLEILDTAGTEQFASMRD 67 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHH--CCCCCCCC--CCCC-----------CEEEEEEEECCEEEEEEEEECCCCHHHHHHHH
T ss_conf 999989999789999999970--98997558--8523-----------31679999888999999998988542567889
Q ss_pred HHHHHHCEEEEEEECCCCCCHHHHHHHHH-HHH----CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHH
Q ss_conf 99874217899997687886478999999-997----2997899997543667402568999998886226730110426
Q gi|254780233|r 101 RILCMVESVVVLVDAAEGPMPQTKFVVGK-ALK----IGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFP 175 (624)
Q Consensus 101 r~l~~~DgaiLvVdA~eGv~~QT~~vl~~-A~~----~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~P 175 (624)
.-.+-+|+++||.|...=--=+.-.-|.. ..+ .++|.|++-||+|.+..|-- -.+|..++- .++.+|
T Consensus 68 ~~~~~a~~~ilvydit~~~Sf~~l~~~~~~i~~~~~~~~~piilVgNK~DL~~~r~V-~~~e~~~~a-------~~~~~~ 139 (163)
T cd04176 68 LYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREV-SSAEGRALA-------EEWGCP 139 (163)
T ss_pred HHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCC-CHHHHHHHH-------HHCCCE
T ss_conf 985578656897127988999999999999999738999639997431340012769-999999999-------985998
Q ss_pred HHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 6887886591646742233486413555321024
Q gi|254780233|r 176 ILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 176 v~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
.+.+||++| .|++.+|+.++..+
T Consensus 140 ~~E~SAk~~-----------~nV~~~F~~l~~~i 162 (163)
T cd04176 140 FMETSAKSK-----------TMVNELFAEIVRQM 162 (163)
T ss_pred EEEECCCCC-----------CCHHHHHHHHHHHH
T ss_conf 999856878-----------17799999999953
No 192
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.04 E-value=3.9e-09 Score=79.20 Aligned_cols=154 Identities=18% Similarity=0.304 Sum_probs=96.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEEC---CEEEEEECCCCCCCCHHH
Q ss_conf 99985468987788999999839614232200000388577987096064679999989---979999728987540799
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWN---DVRINIVDTPGHADFGGE 98 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~---~~~iNiiDTPGH~DF~gE 98 (624)
|+++|-.+-|||+|+-++++ +.|...-.. + =|+....+ .+.+. ..+++|.||+|+.+|..-
T Consensus 3 vvllGd~gVGKTsLi~rf~~--~~F~~~y~~--T----------ig~df~~k--~i~~~~~~~v~l~iwDtaGqe~~~~l 66 (201)
T cd04107 3 VLVIGDLGVGKTSIIKRYVH--GIFSQHYKA--T----------IGVDFALK--VIEWDPNTVVRLQLWDIAGQERFGGM 66 (201)
T ss_pred EEEECCCCCCHHHHHHHHHH--CCCCCCCCC--C----------CCEEEEEE--EEEECCCEEEEEEEEECCCCCCCCCC
T ss_conf 99999999789999999982--999998888--7----------56778998--99967981999999868998322200
Q ss_pred HHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHH--------HCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHH
Q ss_conf 999987421789999768788647899999999--------729978999975436674025689999988862267301
Q gi|254780233|r 99 VERILCMVESVVVLVDAAEGPMPQTKFVVGKAL--------KIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDA 170 (624)
Q Consensus 99 Ver~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~--------~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de 170 (624)
...-.+-++++|||.|...---=+.-..|..-+ ...+|.++|-||+|+...+- ...+++.++-.+.
T Consensus 67 ~~~y~~~a~~~ilvydvt~~~Sf~~l~~w~~~i~~~~~~~~~~~ipiilVgNK~DL~~~~~-v~~ee~~~~a~~~----- 140 (201)
T cd04107 67 TRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLA-KDGEQMDQFCKEN----- 140 (201)
T ss_pred HHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCC-CCHHHHHHHHHHC-----
T ss_conf 3755557764799982798899998999999999986213789871899866556411256-8999999999977-----
Q ss_pred HCCHH-HHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 10426-68878865916467422334864135553210245
Q gi|254780233|r 171 QLDFP-ILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVP 210 (624)
Q Consensus 171 ~ld~P-v~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP 210 (624)
.++ .+.+||++| .|+..+|+.|++.+-
T Consensus 141 --~~~~~~EtSAktg-----------~nV~e~F~~l~~~i~ 168 (201)
T cd04107 141 --GFIGWFETSAKEG-----------INIEEAMRFLVKNIL 168 (201)
T ss_pred --CCCEEEEECCCCC-----------CCHHHHHHHHHHHHH
T ss_conf --9980999779999-----------498999999999998
No 193
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.04 E-value=7.8e-09 Score=77.20 Aligned_cols=161 Identities=24% Similarity=0.364 Sum_probs=105.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCC--C
Q ss_conf 24314999854689877889999998396142322000003885779870960646799999899799997289875--4
Q gi|254780233|r 17 MQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHA--D 94 (624)
Q Consensus 17 ~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~--D 94 (624)
...--||.+|-.-.|||||.-+|..+-+. .+.+... |-|-+- -.|+|++. +.|+|-||+- -
T Consensus 22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~L-ArtSktP-------------GrTq~i--Nff~~~~~-~~lVDlPGYGyAk 84 (200)
T COG0218 22 DDLPEIAFAGRSNVGKSSLINALTNQKNL-ARTSKTP-------------GRTQLI--NFFEVDDE-LRLVDLPGYGYAK 84 (200)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCE-EECCCCC-------------CCCCEE--EEEEECCC-EEEEECCCCCCCC
T ss_conf 88967999816866689999999678635-5657999-------------854236--79983585-7998179954032
Q ss_pred --------CHHHHHHHH---HHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC-CCHHHHHHHHHHHH
Q ss_conf --------079999998---742178999976878864789999999972997899997543667-40256899999888
Q gi|254780233|r 95 --------FGGEVERIL---CMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSD-ARADEVINEVFDLF 162 (624)
Q Consensus 95 --------F~gEVer~l---~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~-a~~~~v~~ei~dlf 162 (624)
+...+++=| .-..+++++||+..++...-+.++..+.+.++|.+|+.||+|+-. ....+.++++.+.+
T Consensus 85 v~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l 164 (200)
T COG0218 85 VPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVAEEL 164 (200)
T ss_pred CCHHHHHHHHHHHHHHHHHCHHHEEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 89999999999999999635222489999978999868799999999975998699997110377467888999999984
Q ss_pred HHCCCCHHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 62267301104266887886591646742233486413555321024
Q gi|254780233|r 163 SALDATDAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 163 ~~l~a~de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
.+...+.+. +++.|+.. ..|++.|.+.|.+++
T Consensus 165 -~~~~~~~~~---~~~~ss~~-----------k~Gi~~l~~~i~~~~ 196 (200)
T COG0218 165 -KKPPPDDQW---VVLFSSLK-----------KKGIDELKAKILEWL 196 (200)
T ss_pred -CCCCCCCCE---EEEEECCC-----------CCCHHHHHHHHHHHH
T ss_conf -689886643---99986545-----------448999999999986
No 194
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.02 E-value=3.5e-09 Score=79.51 Aligned_cols=155 Identities=17% Similarity=0.188 Sum_probs=97.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHH
Q ss_conf 49998546898778899999983961423220000038857798709606467999998997999972898754079999
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVE 100 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVe 100 (624)
-|+++|-.+-|||+|+.+.+. +.+...-. .++ |-. ..+.+.+.-+..+++|.||+|+.+|..-..
T Consensus 4 Kiv~lGd~~VGKTsli~r~~~--~~f~~~y~--~Ti----------~~~-~~k~~~~~~~~~~l~iwDtaG~e~~~~~~~ 68 (164)
T cd04145 4 KLVVVGGGGVGKSALTIQFIQ--SYFVTDYD--PTI----------EDS-YTKQCEIDGQWAILDILDTAGQEEFSAMRE 68 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHC--CCCCCCCC--CCE----------EEE-EEEEEEECCEEEEEEEEECCCCCCCCHHHH
T ss_conf 999999999788999999980--98987567--841----------358-999999999999999998988603125679
Q ss_pred HHHHHHCEEEEEEECCCCCCHHH-HHHHHHHHH----CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHH
Q ss_conf 99874217899997687886478-999999997----2997899997543667402568999998886226730110426
Q gi|254780233|r 101 RILCMVESVVVLVDAAEGPMPQT-KFVVGKALK----IGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFP 175 (624)
Q Consensus 101 r~l~~~DgaiLvVdA~eGv~~QT-~~vl~~A~~----~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~P 175 (624)
..++-+|+++||.|..+=---+. +.-|....+ ..+|.|++-||+|.++.|.- -.++...+-.+ +..+
T Consensus 69 ~~~~~a~~~ilvydi~~~~Sf~~~~~~~~~i~~~~~~~~~piilVgNK~DL~~~r~V-s~~e~~~~a~~-------~~~~ 140 (164)
T cd04145 69 QYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKV-SREEGQELARK-------LKIP 140 (164)
T ss_pred HHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHCCC-CHHHHHHHHHH-------CCCE
T ss_conf 873467874689856735439999999999998618877752653034573540889-99999999998-------1998
Q ss_pred HHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 6887886591646742233486413555321024
Q gi|254780233|r 176 ILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 176 v~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
.+.+||++| .|++.+|+.++..+
T Consensus 141 ~~E~SAk~~-----------~nV~e~F~~l~~~I 163 (164)
T cd04145 141 YIETSAKDR-----------LNVDKAFHDLVRVI 163 (164)
T ss_pred EEEECCCCC-----------CCHHHHHHHHHHHH
T ss_conf 999854868-----------27799999999975
No 195
>TIGR00450 thdF tRNA modification GTPase TrmE; InterPro: IPR004520 The GTP-binding domain of all TrmE/ThdF orthologues is found in the C-terminal portion of the molecule. The N-terminal half can be removed without affecting the GTP-binding/hydrolysis function of the GTP-binding domain. The last four amino acids of all orthologues of ThdF/TrmE are highly conserved, being either CIGK or CLGK. This matches the Caax (where 'a' represents an aliphatic amino acid, and 'x' represents any amino acid) motif for isoprenylation that anchors small GTP-binding proteins to cell membranes in eukaryotic cells. However, protein isoprenylation has never been shown to occur in bacteria. Interestingly, biochemical experiments have shown that the Escherichia coli TrmE protein peripherally associates with the membrane fraction . Although the biochemical properties of TrmE have been investigated for the E. coli and Thermotoga maritima proteins, nothing is known about the relationship of this protein to tRNA modification. Orthologues of TrmE are present in eukaryotes and bacteria, but are not present in archaea. In Saccharomyces cerevisiae, Mss1p is a nuclear-encoded mitochondrial protein that is the yeast orthologue of TrmE. Mss1p interacts with the 15S rRNA of the yeast mitochondria, which is equivalent to the 16S rRNA of bacteria. Subsequent analysis of the S. cerevisiae MTO1 gene suggests that MSS1 and MTO1 act together in a pathway involved in optimizing mitochondrial protein synthesis. TrmE may play a role in tRNA processing and may be directly or indirectly involved in regulating ribosome function.; GO: 0003924 GTPase activity, 0005525 GTP binding, 0006400 tRNA modification, 0005622 intracellular.
Probab=99.02 E-value=7.6e-09 Score=77.27 Aligned_cols=114 Identities=22% Similarity=0.336 Sum_probs=83.9
Q ss_pred CCCC---EEEEECCCCCCHHHHHHHHHHHCCCCCC--CCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCC
Q ss_conf 2431---4999854689877889999998396142--3220000038857798709606467999998997999972898
Q gi|254780233|r 17 MQIR---NIAIIAHVDHGKTTLVDELLKQSGVFRD--NQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPG 91 (624)
Q Consensus 17 ~~IR---NiaIiaHvDhGKTTL~d~LL~~sG~~~~--~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPG 91 (624)
++++ -|||||.+-.|||||.-+||.+-.++-. .|+.-| +|- ..|+.+|+.|+++||-|
T Consensus 220 ~~l~~g~k~ai~G~~NvGKSSLLNa~l~~DrAiVS~~kGtTRD--------------~vE---~~~~L~G~~~~~lDTAG 282 (473)
T TIGR00450 220 EKLKDGFKLAIVGKPNVGKSSLLNALLKQDRAIVSDIKGTTRD--------------VVE---GDFELNGILVKLLDTAG 282 (473)
T ss_pred HHHCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEECCCCCCCC--------------EEE---EEEEECCEEEEEEECCC
T ss_conf 9840894799964788757899998762287055276688320--------------442---05777467899851467
Q ss_pred CCCCHHHHHH--------HHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 7540799999--------9874217899997687886478999999997299789999754366
Q gi|254780233|r 92 HADFGGEVER--------ILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRS 147 (624)
Q Consensus 92 H~DF~gEVer--------~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~ 147 (624)
=.+--..||| ++.-||-+|.|+||..+-...--+.+......+.|.|+|+||.|.-
T Consensus 283 iR~~~~~~E~~GiekS~~~i~~A~LVi~~~D~~~~~~~ddf~li~~~~k~~k~~~~V~NK~DL~ 346 (473)
T TIGR00450 283 IREHADKVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDFELIITLNKKKKPLILVLNKIDLA 346 (473)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 5102004667768998999860573478887478988105899999732179779997350165
No 196
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.02 E-value=2.2e-09 Score=80.79 Aligned_cols=153 Identities=19% Similarity=0.199 Sum_probs=95.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHH
Q ss_conf 49998546898778899999983961423220000038857798709606467999998997999972898754079999
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVE 100 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVe 100 (624)
-|+++|...-|||+|+-+++ .+.+...-.. + =|+....+...+.-+..+++|.||+|...|..-..
T Consensus 3 KivllGd~~VGKTsli~r~~--~~~f~~~y~~--T----------ig~~~~~k~i~~~~~~i~l~iwDtaGqe~~~~l~~ 68 (165)
T cd01865 3 KLLIIGNSSVGKTSFLFRYA--DDSFTSAFVS--T----------VGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITT 68 (165)
T ss_pred EEEEECCCCCCHHHHHHHHH--CCCCCCCCCC--C----------CCEEEEEEEEEECCEEEEEEEEECCCCCCCCCCHH
T ss_conf 99999999968899999992--4988997688--7----------63787999999999999999996999834554415
Q ss_pred HHHHHHCEEEEEEECCCCCCHHHH---HHHHHHH-HC---CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCC
Q ss_conf 998742178999976878864789---9999999-72---9978999975436674025689999988862267301104
Q gi|254780233|r 101 RILCMVESVVVLVDAAEGPMPQTK---FVVGKAL-KI---GLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLD 173 (624)
Q Consensus 101 r~l~~~DgaiLvVdA~eGv~~QT~---~vl~~A~-~~---~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld 173 (624)
.-++-+|+++||.|..+= ++- .-|..-+ .. +.|.+++-||.|.++.|.-. .++..++- +++.
T Consensus 69 ~y~~~a~~~ilvydit~~---~Sf~~~~~w~~~i~~~~~~~~~iilvgNK~DL~~~r~v~-~~~~~~~a-------~~~~ 137 (165)
T cd01865 69 AYYRGAMGFILMYDITNE---ESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVS-SERGRQLA-------DQLG 137 (165)
T ss_pred HHHHCCCEEEEEECCCCH---HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCCCCC-HHHHHHHH-------HHCC
T ss_conf 441135448998517887---999999999999998689872599960242355518899-99999999-------9869
Q ss_pred HHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 266887886591646742233486413555321024
Q gi|254780233|r 174 FPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 174 ~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
+|.+.+||++| .|++.+|+.+++.+
T Consensus 138 ~~~~E~SAk~~-----------~nV~e~F~~l~~~i 162 (165)
T cd01865 138 FEFFEASAKEN-----------INVKQVFERLVDII 162 (165)
T ss_pred CEEEEECCCCC-----------CCHHHHHHHHHHHH
T ss_conf 97999768989-----------08899999999999
No 197
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.01 E-value=5.6e-09 Score=78.13 Aligned_cols=153 Identities=16% Similarity=0.178 Sum_probs=92.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECC--EEEEEECCCCCCCCHHH
Q ss_conf 4999854689877889999998396142322000003885779870960646799999899--79999728987540799
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWND--VRINIVDTPGHADFGGE 98 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~--~~iNiiDTPGH~DF~gE 98 (624)
-|+++|..+.|||+|+-+++. +.+...-. .++.| ...+ .+..++ ++++|.||+|+.+|..-
T Consensus 2 Ki~llGd~~VGKTsli~r~~~--~~f~~~y~--~Ti~~-----------~~~~--~~~~~~~~~~l~iwDt~G~e~~~~~ 64 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTT--GKFPTEYV--PTVFD-----------NYSA--TVTVDGKQVNLGLWDTAGQEEYDRL 64 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHC--CCCCCCCC--CEEEE-----------EEEE--EEEECCEEEEEEEEECCCCCCCCCC
T ss_conf 899999999669999999962--99998758--80346-----------6689--9999999999999989987102413
Q ss_pred HHHHHHHHCEEEEEEECCCCCCHHH-HHHHHHHHH---CCCCEEEEEECCCCCCCCH---------HHH-HHHHHHHHHH
Q ss_conf 9999874217899997687886478-999999997---2997899997543667402---------568-9999988862
Q gi|254780233|r 99 VERILCMVESVVVLVDAAEGPMPQT-KFVVGKALK---IGLRPIVVVNKVDRSDARA---------DEV-INEVFDLFSA 164 (624)
Q Consensus 99 Ver~l~~~DgaiLvVdA~eGv~~QT-~~vl~~A~~---~~l~~IvvINKiDr~~a~~---------~~v-~~ei~dlf~~ 164 (624)
.....+-+|++|||-|..+=--=+. +..|..-+. .+.|.|++-||+|+-+.+. ..| .++..++-.+
T Consensus 65 ~~~~~~~a~~~ilvydit~~~Sf~~i~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~r~V~~~e~~~~a~~ 144 (171)
T cd00157 65 RPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKE 144 (171)
T ss_pred HHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 22344426589999968977889999999999999859998689999871001230002233114751589999999998
Q ss_pred CCCCHHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHC
Q ss_conf 2673011042668878865916467422334864135553210
Q gi|254780233|r 165 LDATDAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVD 207 (624)
Q Consensus 165 l~a~de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~ 207 (624)
+++ .|.+.+||++| .|+..+|+.++.
T Consensus 145 ~~~------~~f~E~SAk~g-----------~nV~e~F~~l~r 170 (171)
T cd00157 145 IGA------IGYMECSALTQ-----------EGVKEVFEEAIR 170 (171)
T ss_pred CCC------CEEEEECCCCC-----------CCHHHHHHHHHC
T ss_conf 499------88999787899-----------598999999966
No 198
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.01 E-value=3.3e-09 Score=79.65 Aligned_cols=153 Identities=15% Similarity=0.161 Sum_probs=96.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHH
Q ss_conf 49998546898778899999983961423220000038857798709606467999998997999972898754079999
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVE 100 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVe 100 (624)
-|.++|..+.|||+|+-+++ .+.+...... + -|+...++...+.-+..+++|.||+|+..|..-..
T Consensus 6 KivlvGd~~VGKTsli~r~~--~~~f~~~~~~--T----------ig~~~~~k~i~~~~~~~~l~iwDt~G~e~~~~l~~ 71 (168)
T cd01866 6 KYIIIGDTGVGKSCLLLQFT--DKRFQPVHDL--T----------IGVEFGARMITIDGKQIKLQIWDTAGQESFRSITR 71 (168)
T ss_pred EEEEECCCCCCHHHHHHHHH--CCCCCCCCCC--C----------CEEEEEEEEEEECCEEEEEEEEECCCCCCCCCCHH
T ss_conf 99999989978899999991--0989998789--8----------50788999999999999999997999733462558
Q ss_pred HHHHHHCEEEEEEECCCCCCHHHH---HHHH-HHHH---CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCC
Q ss_conf 998742178999976878864789---9999-9997---29978999975436674025689999988862267301104
Q gi|254780233|r 101 RILCMVESVVVLVDAAEGPMPQTK---FVVG-KALK---IGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLD 173 (624)
Q Consensus 101 r~l~~~DgaiLvVdA~eGv~~QT~---~vl~-~A~~---~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld 173 (624)
.-.+-+|++|||.|...= ++- .-|. .+.+ .+.|.|++-||+|.+..|.- -.++...+-. +..
T Consensus 72 ~~~~~a~~~ilvydit~~---~Sf~~l~~w~~~i~~~~~~~~~iiLVGNK~DL~~~r~V-~~~e~~~~a~-------~~~ 140 (168)
T cd01866 72 SYYRGAAGALLVYDITRR---ETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREV-SYEEGEAFAK-------EHG 140 (168)
T ss_pred HHHHHHCEEEEECCCCCH---HHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHCCCC-CHHHHHHHHH-------HCC
T ss_conf 886643689993445877---99999999999999867999659984342354540778-9999999999-------869
Q ss_pred HHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 266887886591646742233486413555321024
Q gi|254780233|r 174 FPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 174 ~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
+|.+.+||++| .|++.+|+.+++.+
T Consensus 141 ~~~~E~SAk~~-----------~nV~~~F~~l~~~i 165 (168)
T cd01866 141 LIFMETSAKTA-----------SNVEEAFINTAKEI 165 (168)
T ss_pred CEEEEECCCCC-----------CCHHHHHHHHHHHH
T ss_conf 99999767888-----------08899999999999
No 199
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.00 E-value=6.1e-09 Score=77.90 Aligned_cols=156 Identities=17% Similarity=0.181 Sum_probs=99.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCH---H-
Q ss_conf 999854689877889999998396142322000003885779870960646799999899799997289875407---9-
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFG---G- 97 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~---g- 97 (624)
|+++|-.+-|||+|+-+.+ .|.|...-.. + -|..+..+...+.-+.+++.|.||||.-.|. |
T Consensus 3 ivvlG~~gVGKTsli~rf~--~~~F~~~y~p--T----------ig~~~~~k~v~~dg~~~~l~IwDtag~~~~~~tagq 68 (198)
T cd04142 3 VAVLGAPGVGKTAIVRQFL--AQEFPEEYIP--T----------EHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQ 68 (198)
T ss_pred EEEECCCCCCHHHHHHHHH--HCCCCCCCCC--C----------CCEEEEEEEEEECCEEEEEEEEECCCCCCCCCCCCH
T ss_conf 9999979989999999997--1988887478--4----------661678999999999999999958773045556521
Q ss_pred H----HHHHHHHHCEEEEEEECCCCCCHHHH---HHHHH-HHH------CCCCEEEEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 9----99998742178999976878864789---99999-997------2997899997543667402568999998886
Q gi|254780233|r 98 E----VERILCMVESVVVLVDAAEGPMPQTK---FVVGK-ALK------IGLRPIVVVNKVDRSDARADEVINEVFDLFS 163 (624)
Q Consensus 98 E----Ver~l~~~DgaiLvVdA~eGv~~QT~---~vl~~-A~~------~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~ 163 (624)
| ..|.++-+||++||-|-+.= +|- ..|.+ ..+ ...|+|+|-||.|.++.|.-. .++...+..
T Consensus 69 e~~~~r~~~ir~a~~~ilVydvt~~---~SF~~v~~~~~~i~~~~~~~~~~~piiLVGNK~DL~~~R~v~-~~~~~~~a~ 144 (198)
T cd04142 69 EWMDPRFRGLRNSRAFILVYDICSP---DSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAP-RHVLSVLVR 144 (198)
T ss_pred HHHHHHHHHCCCCCEEEEEEECCCH---HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCC-HHHHHHHHH
T ss_conf 2355564401468889999988677---888999999999999851479998289983454310035688-999999998
Q ss_pred HCCCCHHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCCC
Q ss_conf 2267301104266887886591646742233486413555321024542
Q gi|254780233|r 164 ALDATDAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPP 212 (624)
Q Consensus 164 ~l~a~de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~P 212 (624)
+ ....+.+.+||++| .++..+|+.++..+-..
T Consensus 145 ~------~~~~~f~EtSAK~~-----------~nV~~~F~~lvr~i~~~ 176 (198)
T cd04142 145 K------SWKCGYLECSAKYN-----------WHILLLFKELLISATTR 176 (198)
T ss_pred H------CCCCEEEECCCCCC-----------CCHHHHHHHHHHHHHHH
T ss_conf 5------19976998878899-----------69899999999999860
No 200
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.00 E-value=3.7e-09 Score=79.34 Aligned_cols=152 Identities=17% Similarity=0.210 Sum_probs=96.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHHH
Q ss_conf 99985468987788999999839614232200000388577987096064679999989979999728987540799999
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVER 101 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVer 101 (624)
|+++|-.+.|||+|+-+++. |.+.+.- ..++ |-+ ..+...+.-+.++++|.||+|...|..-...
T Consensus 4 ivlvGd~~VGKTsli~rf~~--~~f~~~y--~pTi----------~~~-~~k~i~i~~~~~~l~iwDtaG~e~~~~~~~~ 68 (168)
T cd04177 4 IVVLGAGGVGKSALTVQFVQ--NVFIESY--DPTI----------EDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMREL 68 (168)
T ss_pred EEEECCCCCCHHHHHHHHHH--CCCCCCC--CCCC----------CCE-EEEEEEECCEEEEEEEEECCCCCCCCCCHHH
T ss_conf 99989999779999999961--9389865--8833----------315-9999999999999999827886233345154
Q ss_pred HHHHHCEEEEEEECCCCCCHHHH----HHHHHHH----HCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCC
Q ss_conf 98742178999976878864789----9999999----729978999975436674025689999988862267301104
Q gi|254780233|r 102 ILCMVESVVVLVDAAEGPMPQTK----FVVGKAL----KIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLD 173 (624)
Q Consensus 102 ~l~~~DgaiLvVdA~eGv~~QT~----~vl~~A~----~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld 173 (624)
-.+-+|+++||.|.++- +|- ..|.... ..++|.+++-||.|..+.|.-. .++..++-.+++ .
T Consensus 69 ~~~~a~~~ilvydvt~~---~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~DL~~~r~v~-~~e~~~~a~~~~------~ 138 (168)
T cd04177 69 YIKSGQGFLLVYSVTSE---ASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVS-REDGVSLSQQWG------N 138 (168)
T ss_pred HHCCCCEEEEECCCCCH---HHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHCCCCC-HHHHHHHHHHCC------C
T ss_conf 51268667985368988---8999999999999985178887489887314612137689-999999999749------9
Q ss_pred HHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 266887886591646742233486413555321024
Q gi|254780233|r 174 FPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 174 ~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
.|.+.+||++| .+++.+|+.+++.+
T Consensus 139 ~~~~E~SAk~~-----------~nV~e~F~~l~~~i 163 (168)
T cd04177 139 VPFYETSARKR-----------TNVDEVFIDLVRQI 163 (168)
T ss_pred CEEEEECCCCC-----------CCHHHHHHHHHHHH
T ss_conf 77999624878-----------46899999999999
No 201
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.99 E-value=9e-09 Score=76.80 Aligned_cols=156 Identities=19% Similarity=0.218 Sum_probs=96.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHHH
Q ss_conf 99985468987788999999839614232200000388577987096064679999989979999728987540799999
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVER 101 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVer 101 (624)
|+++|..+.|||+|+-+++ .|.|...- . ...+ -+|+ ...+.-+..+++|.||+|..+|..-...
T Consensus 3 iv~vGd~~VGKTsli~r~~--~~~F~~~~--~-~t~~--------~~~~---~~~~~~~~v~l~i~DtaG~e~~~~~~~~ 66 (166)
T cd01893 3 IVLIGDEGVGKSSLIMSLV--SEEFPENV--P-RVLP--------EITI---PADVTPERVPTTIVDTSSRPQDRANLAA 66 (166)
T ss_pred EEEECCCCCCHHHHHHHHH--HCCCCCCC--C-CCCC--------CEEE---EEEECCEEEEEEEEECCCCCCCCHHHHH
T ss_conf 9999999989999999998--49788877--7-6345--------6899---9998890999999989987230245798
Q ss_pred HHHHHCEEEEEEECCCCCCHHH-HHHHHH---HHHCCCCEEEEEECCCCCCCCHHHHH-HHHHHHHHHCCCCHHHCCHHH
Q ss_conf 9874217899997687886478-999999---99729978999975436674025689-999988862267301104266
Q gi|254780233|r 102 ILCMVESVVVLVDAAEGPMPQT-KFVVGK---ALKIGLRPIVVVNKVDRSDARADEVI-NEVFDLFSALDATDAQLDFPI 176 (624)
Q Consensus 102 ~l~~~DgaiLvVdA~eGv~~QT-~~vl~~---A~~~~l~~IvvINKiDr~~a~~~~v~-~ei~dlf~~l~a~de~ld~Pv 176 (624)
..+-+|+++||-|..+=---+- ...|.. ....+.|+|++-||+|..+.+-.... .+...+..+... + .+.
T Consensus 67 ~~~~a~~~ilvydit~~~Sf~~i~~~w~~~i~~~~~~~piilvGNK~DL~~~r~~~~~e~~~~~~~~~~~~----~-~~~ 141 (166)
T cd01893 67 EIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFRE----I-ETC 141 (166)
T ss_pred HHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCC----C-CEE
T ss_conf 73689889999708987789999999999999868999689999886540025033588999999997307----4-889
Q ss_pred HHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 887886591646742233486413555321024
Q gi|254780233|r 177 LYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 177 ~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
+.+||++| .|+..+|+.+...+
T Consensus 142 ~EtSAktg-----------~nV~e~F~~~~k~~ 163 (166)
T cd01893 142 VECSAKTL-----------INVSEVFYYAQKAV 163 (166)
T ss_pred EEECCCCC-----------CCHHHHHHHHHHHH
T ss_conf 99065889-----------19899999999998
No 202
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.99 E-value=1.2e-08 Score=75.95 Aligned_cols=154 Identities=19% Similarity=0.222 Sum_probs=96.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHHH
Q ss_conf 99985468987788999999839614232200000388577987096064679999989979999728987540799999
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVER 101 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVer 101 (624)
|+++|..+.|||||+-+++. +.+...- +..-|+....+...+.-...+++|.||+|...|..-...
T Consensus 3 i~vvG~~~vGKTsli~r~~~--~~f~~~~------------~~tig~d~~~k~v~~~~~~~~l~i~D~~g~e~~~~~~~~ 68 (161)
T cd01861 3 LVFLGDQSVGKTSIITRFMY--DTFDNQY------------QATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPS 68 (161)
T ss_pred EEEECCCCCCHHHHHHHHHH--CCCCCCC------------CCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHH
T ss_conf 99999799789999999931--9999984------------897567889999999999999999979985315788898
Q ss_pred HHHHHCEEEEEEECCCCCCHHHHHHHHH-HHHC---CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHH
Q ss_conf 9874217899997687886478999999-9972---99789999754366740256899999888622673011042668
Q gi|254780233|r 102 ILCMVESVVVLVDAAEGPMPQTKFVVGK-ALKI---GLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFPIL 177 (624)
Q Consensus 102 ~l~~~DgaiLvVdA~eGv~~QT~~vl~~-A~~~---~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~Pv~ 177 (624)
.++-+|++++|.|...----+.-..|.. .... ..+++++-||+|.++.+.-. .++...+-. +..++.+
T Consensus 69 ~~~~~~~~ilvfd~t~~~Sf~~~~~w~~~i~~~~~~~~~ivlvGnK~Dl~~~r~v~-~~e~~~~a~-------~~~~~y~ 140 (161)
T cd01861 69 YIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVS-TEEGEKKAK-------ELNAMFI 140 (161)
T ss_pred HHHHHCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHCCCCC-HHHHHHHHH-------HCCCEEE
T ss_conf 86652589999847998999999999999998657898499961021102217789-999999999-------8499899
Q ss_pred HHHHHCCEECCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 8788659164674223348641355532102
Q gi|254780233|r 178 YGSGRFGWMSDSSDGSRDQGMVPLLNLIVDH 208 (624)
Q Consensus 178 ~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~ 208 (624)
.+||++| .|+..+|+.|...
T Consensus 141 E~Sak~~-----------~nV~e~F~~la~~ 160 (161)
T cd01861 141 ETSAKAG-----------HNVKELFRKIASA 160 (161)
T ss_pred EECCCCC-----------CCHHHHHHHHHHH
T ss_conf 9834778-----------0889999999970
No 203
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=98.99 E-value=4.2e-09 Score=78.97 Aligned_cols=150 Identities=17% Similarity=0.226 Sum_probs=96.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECC--EEEEEECCCCCCCCHHHH
Q ss_conf 999854689877889999998396142322000003885779870960646799999899--799997289875407999
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWND--VRINIVDTPGHADFGGEV 99 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~--~~iNiiDTPGH~DF~gEV 99 (624)
|+++|...-|||+|+-+++ .|.+...... + -|+....+. +..++ .+++|.||+|...|..-.
T Consensus 3 IvllGd~~VGKTsli~r~~--~~~f~~~~~~--T----------ig~~~~~k~--v~~~~~~i~l~iwDtaGqe~~~~~~ 66 (161)
T cd04117 3 LLLIGDSGVGKTCLLCRFT--DNEFHSSHIS--T----------IGVDFKMKT--IEVDGIKVRIQIWDTAGQERYQTIT 66 (161)
T ss_pred EEEECCCCCCHHHHHHHHH--CCCCCCCCCC--C----------CEEEEEEEE--EEECCEEEEEEEEECCCCCCCCCCH
T ss_conf 9999949985899999994--2998998788--7----------208988999--9999999999999799960236355
Q ss_pred HHHHHHHCEEEEEEECCCCCCHHHH---HHHHHHH-H---CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHC
Q ss_conf 9998742178999976878864789---9999999-7---2997899997543667402568999998886226730110
Q gi|254780233|r 100 ERILCMVESVVVLVDAAEGPMPQTK---FVVGKAL-K---IGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQL 172 (624)
Q Consensus 100 er~l~~~DgaiLvVdA~eGv~~QT~---~vl~~A~-~---~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~l 172 (624)
..-.+-+|+++||.|... .+|- .-|..-. + .+.|.|++-||.|.+..|.- -.++..++-. +.
T Consensus 67 ~~y~r~a~~~ilvyDvt~---~~Sf~~l~~w~~~i~~~~~~~~~~ilVgNK~Dl~~~r~v-~~~~~~~~a~-------~~ 135 (161)
T cd04117 67 KQYYRRAQGIFLVYDISS---ERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQV-GDEQGNKLAK-------EY 135 (161)
T ss_pred HHHHHHHCEEEEECCCCC---HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHCCCC-CHHHHHHHHH-------HC
T ss_conf 888764168899614898---899999999999999878998649998732787862779-9999999999-------86
Q ss_pred CHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 4266887886591646742233486413555321024
Q gi|254780233|r 173 DFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 173 d~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
..|.+.+||++| .|+..+|+.|.+.+
T Consensus 136 ~~~~~etSAk~~-----------~nV~e~F~~l~~~i 161 (161)
T cd04117 136 GMDFFETSACTN-----------SNIKESFTRLTELV 161 (161)
T ss_pred CCEEEEECCCCC-----------CCHHHHHHHHHHHC
T ss_conf 997999677898-----------29899999999649
No 204
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=98.99 E-value=6.9e-09 Score=77.56 Aligned_cols=152 Identities=17% Similarity=0.204 Sum_probs=97.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHH
Q ss_conf 49998546898778899999983961423220000038857798709606467999998997999972898754079999
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVE 100 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVe 100 (624)
-|+++|...-|||+|+-+++. |.+...-. .++ |-. ..+...+.-+.++++|.||+|+..|..-..
T Consensus 3 KIvllGd~~VGKTsli~r~~~--~~f~~~y~--pTi----------~~~-~~k~i~~~~~~~~l~iwDtaG~e~~~~l~~ 67 (164)
T cd04175 3 KLVVLGSGGVGKSALTVQFVQ--GIFVEKYD--PTI----------EDS-YRKQVEVDGQQCMLEILDTAGTEQFTAMRD 67 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHH--CCCCCCCC--CCE----------EEE-EEEEEEECCEEEEEEECCCCCCHHHHHHHH
T ss_conf 999989999759999999970--92886568--840----------468-999999999999998514775432456788
Q ss_pred HHHHHHCEEEEEEECCCCCCHHHH----HHHHHHHH----CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHC
Q ss_conf 998742178999976878864789----99999997----2997899997543667402568999998886226730110
Q gi|254780233|r 101 RILCMVESVVVLVDAAEGPMPQTK----FVVGKALK----IGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQL 172 (624)
Q Consensus 101 r~l~~~DgaiLvVdA~eGv~~QT~----~vl~~A~~----~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~l 172 (624)
.-++-+|+++||-|..+= ++- ..|....+ .++|.|++-||+|.++.|.- -.++..++-. ++
T Consensus 68 ~y~~~a~~~ilvydvt~~---~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~DL~~~r~V-~~~~~~~~a~-------~~ 136 (164)
T cd04175 68 LYMKNGQGFVLVYSITAQ---STFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVV-GKEQGQNLAR-------QW 136 (164)
T ss_pred HHHCCCCEEEEEEECCCH---HHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHCCCC-CHHHHHHHHH-------HC
T ss_conf 873578689999607877---789999999999998628999639985214572220689-9999999999-------85
Q ss_pred CHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 4266887886591646742233486413555321024
Q gi|254780233|r 173 DFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 173 d~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
.++.+.+||++| .|+..+|+.+++.+
T Consensus 137 ~~~~~E~SAk~~-----------~nV~~~F~~l~~~i 162 (164)
T cd04175 137 GCAFLETSAKAK-----------INVNEIFYDLVRQI 162 (164)
T ss_pred CCEEEEECCCCC-----------CCHHHHHHHHHHHH
T ss_conf 999999668988-----------17899999999986
No 205
>pfam09439 SRPRB Signal recognition particle receptor beta subunit. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase which anchors the alpha subunit to the endoplasmic reticulum membrane.
Probab=98.98 E-value=1.9e-08 Score=74.73 Aligned_cols=124 Identities=21% Similarity=0.279 Sum_probs=77.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHH
Q ss_conf 14999854689877889999998396142322000003885779870960646799999899799997289875407999
Q gi|254780233|r 20 RNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEV 99 (624)
Q Consensus 20 RNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEV 99 (624)
+-|-|+|--|+|||||.-+|.. |.+ .+++. |. | -.++ .....+++.+++++|+|||.-+....
T Consensus 4 ptvLllGl~~sGKT~Lf~~L~~--~~~------~~T~t-S~--~--~n~~----~~~~~~~~~~~~lvD~PGh~klR~~~ 66 (181)
T pfam09439 4 PAVIIAGLCDSGKTSLFTLLTT--GSV------RKTVT-SQ--E--PSAA----YKYMNNKGNSLTLIDFPGHVKLRYKL 66 (181)
T ss_pred CEEEEECCCCCCHHHHHHHHHC--CCC------CCEEC-CC--C--CCCE----EEEECCCCCEEEEEECCCCHHHHHHH
T ss_conf 8699986899989999999975--994------87588-86--7--8640----68751689668999889968999999
Q ss_pred HH---HHHHHCEEEEEEECCCC--CCHHHHHHHHHHH------HCCCCEEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 99---98742178999976878--8647899999999------72997899997543667402568999998
Q gi|254780233|r 100 ER---ILCMVESVVVLVDAAEG--PMPQTKFVVGKAL------KIGLRPIVVVNKVDRSDARADEVINEVFD 160 (624)
Q Consensus 100 er---~l~~~DgaiLvVdA~eG--v~~QT~~vl~~A~------~~~l~~IvvINKiDr~~a~~~~v~~ei~d 160 (624)
.. -.+-+.|.|.|||+..- -...+..-|...+ ..++|++|+-||.|.+.|.+...+.+..+
T Consensus 67 ~~~~~~~~~~~gIVfVVDS~~~~~~l~~~Ae~Ly~iL~~~~~~~~~vPvLI~cNKqDl~~A~~~~~Ik~~LE 138 (181)
T pfam09439 67 LETLKDSSSLRGLVFVVDSTAFPKEVTDTAEFLYDILSITELLKNGIDILIACNKQEIFTARPPKKIKQALE 138 (181)
T ss_pred HHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHH
T ss_conf 986430026449999997866566799999999999844543368997899973746335779999999999
No 206
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=98.98 E-value=8e-09 Score=77.12 Aligned_cols=159 Identities=15% Similarity=0.128 Sum_probs=91.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHHH
Q ss_conf 99985468987788999999839614232200000388577987096064679999989979999728987540799999
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVER 101 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVer 101 (624)
|+++|-.+-|||+|+-+.+ .+.+...-. .++. ...++...+.-+.++++|.||+|+.+|..-..-
T Consensus 1 ivllGd~~VGKTsli~r~~--~~~f~~~y~--~Ti~-----------~~~~~~~~~~~~~~~l~i~DtaG~e~~~~l~~~ 65 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYT--TNAFPEDYV--PTVF-----------ENYSADVEVDGKPVELGLWDTAGQEDYDRLRPL 65 (174)
T ss_pred EEEECCCCCCHHHHHHHHH--HCCCCCCCC--CCEE-----------EEEEEEEEECCEEEEEEEEECCCCCCCCCCCHH
T ss_conf 5998978975999999995--398999857--8505-----------789999999999999999948987034545001
Q ss_pred HHHHHCEEEEEEECCCCCCHHH-HHHHHHHH---HCCCCEEEEEECCCCCCCCH--HH--------H-HHHHHHHHHHCC
Q ss_conf 9874217899997687886478-99999999---72997899997543667402--56--------8-999998886226
Q gi|254780233|r 102 ILCMVESVVVLVDAAEGPMPQT-KFVVGKAL---KIGLRPIVVVNKVDRSDARA--DE--------V-INEVFDLFSALD 166 (624)
Q Consensus 102 ~l~~~DgaiLvVdA~eGv~~QT-~~vl~~A~---~~~l~~IvvINKiDr~~a~~--~~--------v-~~ei~dlf~~l~ 166 (624)
..+-+|++|||-|..+=--=+. ...|..-. ..++|+|++-||+|..+.+- .+ | .++...+-.+++
T Consensus 66 ~~~~a~~~ilvydvt~~~Sf~~~~~~w~~~i~~~~~~~piilVgnK~DL~~~~~~~~~~~~~~~~~Vs~~~~~~~a~~~~ 145 (174)
T smart00174 66 SYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIG 145 (174)
T ss_pred HCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCC
T ss_conf 10488689999758987899999998999999868898699998754250123335455331465002999999999839
Q ss_pred CCHHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCCC
Q ss_conf 7301104266887886591646742233486413555321024542
Q gi|254780233|r 167 ATDAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPP 212 (624)
Q Consensus 167 a~de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~P 212 (624)
+ .+.+.+||++| .|+..+|+.++..+=.|
T Consensus 146 ~------~~y~EtSAk~g-----------~nV~e~F~~l~r~~l~p 174 (174)
T smart00174 146 A------VKYLECSALTQ-----------EGVREVFEEAIRAALNP 174 (174)
T ss_pred C------CEEEEECCCCC-----------CCHHHHHHHHHHHHHCC
T ss_conf 9------78999645889-----------49899999999997294
No 207
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.97 E-value=5.1e-09 Score=78.39 Aligned_cols=152 Identities=20% Similarity=0.247 Sum_probs=95.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHH
Q ss_conf 49998546898778899999983961423220000038857798709606467999998997999972898754079999
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVE 100 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVe 100 (624)
-|+++|-...|||||+.+++ .|.+.+.... + -|+....+...+.-+..++.|.||+|...|..-..
T Consensus 5 Kiv~lGd~~vGKTsli~r~~--~~~f~~~~~~--T----------i~~~~~~k~i~~~~~~~~l~iwDtaG~e~~~~l~~ 70 (165)
T cd01864 5 KIILIGDSNVGKTCVVQRFK--SGTFSERQGN--T----------IGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQ 70 (165)
T ss_pred EEEEECCCCCCHHHHHHHHH--HCCCCCCCCC--C----------CCEEEEEEEEEECCEEEEEEEEECCCCCCCCCCCH
T ss_conf 99999999958999999996--4999998799--7----------54378999999999999999998999834453507
Q ss_pred HHHHHHCEEEEEEECCCCCCHHHH---HHHHHHH-H---CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCC
Q ss_conf 998742178999976878864789---9999999-7---29978999975436674025689999988862267301104
Q gi|254780233|r 101 RILCMVESVVVLVDAAEGPMPQTK---FVVGKAL-K---IGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLD 173 (624)
Q Consensus 101 r~l~~~DgaiLvVdA~eGv~~QT~---~vl~~A~-~---~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld 173 (624)
.-++-+|++|||.|...= ++- .-|..-+ . .+.|.|++-||+|.++.|.- -.++...+-... .
T Consensus 71 ~~~~~a~~~ilvydit~~---~Sf~~~~~w~~~i~~~~~~~~~iilVGNK~DL~~~r~V-~~~~~~~~a~~~-------~ 139 (165)
T cd01864 71 SYYRSANGAIIAYDITRR---SSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREV-LFEEACTLAEKN-------G 139 (165)
T ss_pred HHEECCCEEEEEECCCCH---HHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHCCC-CHHHHHHHHHHC-------C
T ss_conf 552215666997138998---99999999999999876999843888772376862899-999999999983-------9
Q ss_pred HH-HHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 26-688788659164674223348641355532102
Q gi|254780233|r 174 FP-ILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDH 208 (624)
Q Consensus 174 ~P-v~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~ 208 (624)
.+ ++.+||++| .|+..+|+.|...
T Consensus 140 ~~~~~E~SAk~~-----------~nV~e~F~~la~~ 164 (165)
T cd01864 140 MLAVLETSAKES-----------QNVEEAFLLMATE 164 (165)
T ss_pred CCEEEEECCCCC-----------CCHHHHHHHHHHH
T ss_conf 976999788858-----------1989999999984
No 208
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.96 E-value=9.3e-09 Score=76.69 Aligned_cols=148 Identities=16% Similarity=0.177 Sum_probs=95.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEE---EEEEEEEEECCEEEEEECCCCCCCCHHH
Q ss_conf 9998546898778899999983961423220000038857798709606---4679999989979999728987540799
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITI---LAKVTSIVWNDVRINIVDTPGHADFGGE 98 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI---~a~~~~~~~~~~~iNiiDTPGH~DF~gE 98 (624)
|++||..+-|||+|+-+++. +.|...-. -|| ..+...+.-+.++++|.||.|+..|..-
T Consensus 2 ivviGd~gVGKTsli~r~~~--~~F~~~y~----------------pTi~~~~~k~~~~~~~~~~l~iwDtaG~e~~~~l 63 (190)
T cd04144 2 LVVLGDGGVGKTALTIQLCL--NHFVETYD----------------PTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTAL 63 (190)
T ss_pred EEEECCCCCCHHHHHHHHHH--CCCCCCCC----------------CCCCEEEEEEEEECCEEEEEEEEECCCCCCHHHH
T ss_conf 89999899878999999962--97998869----------------9724788999999999999999989997311678
Q ss_pred HHHHHHHHCEEEEEEECCCCCCHHH---HHHHHHHH-------HCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 9999874217899997687886478---99999999-------7299789999754366740256899999888622673
Q gi|254780233|r 99 VERILCMVESVVVLVDAAEGPMPQT---KFVVGKAL-------KIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDAT 168 (624)
Q Consensus 99 Ver~l~~~DgaiLvVdA~eGv~~QT---~~vl~~A~-------~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~ 168 (624)
...-++-+|++|||-|..+= +| -.-|..-+ ..++|.|++-||+|..+.|-- -.+|..++-.++
T Consensus 64 ~~~~~r~a~~~ilVydvtd~---~SF~~l~~w~~~i~~~~~~~~~~~piiLVGNK~Dl~~~r~V-~~~e~~~~a~~~--- 136 (190)
T cd04144 64 RDQWIREGEGFILVYSITSR---STFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREV-STEEGAALARRL--- 136 (190)
T ss_pred HHHHHCCCCEEEEEEECCCH---HHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHCCCC-CHHHHHHHHHHC---
T ss_conf 89982367658999727977---89999999999999985337999528951455350330578-999999999980---
Q ss_pred HHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 01104266887886591646742233486413555321024
Q gi|254780233|r 169 DAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 169 de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
..+.+.+||++| .|++.+|+.++..+
T Consensus 137 ----~~~~~E~SAk~~-----------~nV~e~F~~l~~~i 162 (190)
T cd04144 137 ----GCEFIEASAKTN-----------VNVERAFYTLVRAL 162 (190)
T ss_pred ----CCEEEEECCCCC-----------CCHHHHHHHHHHHH
T ss_conf ----998999735888-----------09799999999999
No 209
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=98.96 E-value=2e-08 Score=74.57 Aligned_cols=158 Identities=18% Similarity=0.210 Sum_probs=97.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHH-
Q ss_conf 3149998546898778899999983961423220000038857798709606467999998997999972898754079-
Q gi|254780233|r 19 IRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGG- 97 (624)
Q Consensus 19 IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~g- 97 (624)
+=.|+++|....|||+|+.+++ .+.|...-.. + -|+....+...+.-+..+++|.||+|...|..
T Consensus 2 ~~Kiv~lGd~~VGKTsli~r~~--~~~F~~~~~~--T----------ig~d~~~k~i~v~~~~v~l~iwDtaG~e~~~~s 67 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFC--AGRFPERTEA--T----------IGVDFRERTVEIDGERIKVQLWDTAGQERFRKS 67 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHH--CCCCCCCCCC--C----------EEEEEEEEEEEECCEEEEEEEEECCCCHHHHHH
T ss_conf 6999999979977999999995--3988998788--6----------307878999999999999999977885305677
Q ss_pred HHHHHHHHHCEEEEEEECCCCCCHHHH---HHHHHHH-----HCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCH
Q ss_conf 999998742178999976878864789---9999999-----72997899997543667402568999998886226730
Q gi|254780233|r 98 EVERILCMVESVVVLVDAAEGPMPQTK---FVVGKAL-----KIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATD 169 (624)
Q Consensus 98 EVer~l~~~DgaiLvVdA~eGv~~QT~---~vl~~A~-----~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~d 169 (624)
-...-.+-+|++|||.|.++= ++- .-|..-+ ...+|.+++-||.|..+.+-- -.+|..++-.
T Consensus 68 ~~~~~~~~a~~~ilvydvt~~---~Sf~~~~~w~~~i~~~~~~~~~p~vlVGNK~DL~~~r~V-s~~e~~~~a~------ 137 (170)
T cd04115 68 MVQHYYRNVHAVVFVYDVTNM---ASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQV-PTDLAQRFAD------ 137 (170)
T ss_pred HHHHHHCCCCEEEEEEECCCH---HHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHCCC-CHHHHHHHHH------
T ss_conf 789984577357999504747---679999999999998658889979999998213411787-9999999999------
Q ss_pred HHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 1104266887886591646742233486413555321024
Q gi|254780233|r 170 AQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 170 e~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
+..+|.+.+|||+| ....+++.+|..+.+.+
T Consensus 138 -~~~~~~~E~SAK~~--------~~~~nV~~~F~~la~~i 168 (170)
T cd04115 138 -AHSMPLFETSAKDP--------SENDHVEAIFMTLAHKL 168 (170)
T ss_pred -HCCCEEEEECCCCC--------CCCCCHHHHHHHHHHHH
T ss_conf -77999999888998--------51708899999999996
No 210
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=98.96 E-value=1.1e-08 Score=76.28 Aligned_cols=153 Identities=19% Similarity=0.216 Sum_probs=93.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHHH
Q ss_conf 99985468987788999999839614232200000388577987096064679999989979999728987540799999
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVER 101 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVer 101 (624)
|+++|-.+-|||+|+-+++. |.+...- ..++-| + ..+...+.-+.++++|.||.|...|..-...
T Consensus 4 ivllGd~~VGKTsli~r~~~--~~F~~~y--~~Ti~~----------~-~~~~i~~~~~~~~l~iwDtaG~e~~~~l~~~ 68 (165)
T cd04140 4 VVVFGAGGVGKSSLVLRFVK--GTFRESY--IPTIED----------T-YRQVISCSKNICTLQITDTTGSHQFPAMQRL 68 (165)
T ss_pred EEEECCCCCCHHHHHHHHHH--CCCCCCC--CCCCCC----------E-EEEEEEECCEEEEEEEEECCCCCCCCCCHHH
T ss_conf 99989999769999999964--9699986--884542----------0-5589999999999999989998465423244
Q ss_pred HHHHHCEEEEEEECCCCCCHH-HHHHHHHHHH------CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCH
Q ss_conf 987421789999768788647-8999999997------299789999754366740256899999888622673011042
Q gi|254780233|r 102 ILCMVESVVVLVDAAEGPMPQ-TKFVVGKALK------IGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDF 174 (624)
Q Consensus 102 ~l~~~DgaiLvVdA~eGv~~Q-T~~vl~~A~~------~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~ 174 (624)
..+-+|++|||-|..+=--=+ -+..|....+ .++|.+++-||+|....|.- -.++..++-.+ +..
T Consensus 69 ~~~~a~~~ilvydit~~~Sf~~~~~~~~~i~~~~~~~~~~~piilVgNK~Dl~~~r~V-~~~e~~~~a~~-------~~~ 140 (165)
T cd04140 69 SISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREV-SSNEGAACATE-------WNC 140 (165)
T ss_pred HHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCC-CHHHHHHHHHH-------CCC
T ss_conf 5068857999813898789999999999999996158888878998642464002788-99999999998-------698
Q ss_pred HHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 6688788659164674223348641355532102
Q gi|254780233|r 175 PILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDH 208 (624)
Q Consensus 175 Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~ 208 (624)
+.+.+||++| .|++.+|+.+++-
T Consensus 141 ~~~E~SAk~~-----------~nV~e~F~~l~~l 163 (165)
T cd04140 141 AFMETSAKTN-----------HNVQELFQELLNL 163 (165)
T ss_pred EEEEECCCCC-----------CCHHHHHHHHHHC
T ss_conf 8999744779-----------4879999999814
No 211
>pfam03144 GTP_EFTU_D2 Elongation factor Tu domain 2. Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA. This domain is also found in other proteins such as elongation factor G and translation initiation factor IF-2. This domain is structurally related to pfam03143, and in fact has weak sequence matches to this domain.
Probab=98.95 E-value=8.7e-10 Score=83.46 Aligned_cols=70 Identities=34% Similarity=0.533 Sum_probs=62.9
Q ss_pred CEEEEEEECCCCCCCCCEEEEECCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEC
Q ss_conf 349999960780515988999605785012114553011036653444112545543222233210122110
Q gi|254780233|r 233 GRIVTGRIHSGTIKSNQNIKALSPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSIAGLVKATVADTFC 304 (624)
Q Consensus 233 Gria~gRV~sGtlk~Gd~V~vl~~~g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIvaIaGl~~~~iGDTL~ 304 (624)
|++++|||+||+|++||.|.++ +++.. +..||.+|+.+++..+.+++.+.+|+|+++.+++++.+||||+
T Consensus 1 G~v~~grv~~G~lk~gd~v~~~-~~~~~-~~~kV~~l~~~~~~~~~~~~g~~~g~iv~~~~~~~i~~Gdti~ 70 (70)
T pfam03144 1 GTVATGRVESGTLKKGDKVVIG-PNGTG-KKGRVTSLEMFHGDLREAVAGANAGIILAGIGLKDIKRGDTLT 70 (70)
T ss_pred CEEEEEEEEECEEECCCEEEEE-CCCCC-CCEEEEEEEEECCCHHHHHCCCCCEEEEEECCCCCCCCCCEEC
T ss_conf 9599999980989659999993-69962-2137718999775512211511000378746704572467949
No 212
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=98.95 E-value=1.6e-08 Score=75.07 Aligned_cols=154 Identities=17% Similarity=0.297 Sum_probs=97.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECC--EEEEEECCCCCCCCHHHH
Q ss_conf 999854689877889999998396142322000003885779870960646799999899--799997289875407999
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWND--VRINIVDTPGHADFGGEV 99 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~--~~iNiiDTPGH~DF~gEV 99 (624)
|+++|..+-|||+|+.+++. +.+...-. ..-|+....+...+..++ .+++|.||+|...|..-.
T Consensus 3 ivvlGd~~VGKTsLi~r~~~--~~f~~~y~------------~Tig~~~~~k~i~~~~~~~~v~l~iwDtaG~e~~~~l~ 68 (162)
T cd04106 3 VIVVGNGNVGKSSMIQRFVK--GIFTKDYK------------KTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAIT 68 (162)
T ss_pred EEEECCCCCCHHHHHHHHHH--CCCCCCCC------------CCCCCEEEEEEEEECCCCEEEEEEEEECCCCCCCCCCH
T ss_conf 99999999889999999984--96898768------------85562578878998679979999999789970134152
Q ss_pred HHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHH---CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHH
Q ss_conf 999874217899997687886478999999997---29978999975436674025689999988862267301104266
Q gi|254780233|r 100 ERILCMVESVVVLVDAAEGPMPQTKFVVGKALK---IGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFPI 176 (624)
Q Consensus 100 er~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~---~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~Pv 176 (624)
..-.+-+|++|||.|...=--=+.-.-|..-++ -.+|+|++-||+|..+.+.- -.++..++-. ++..|.
T Consensus 69 ~~~~~~a~~~ilvydvt~~~Sf~~l~~w~~~~~~~~~~~piilVgNK~DL~~~r~V-~~~e~~~~a~-------~~~~~~ 140 (162)
T cd04106 69 KAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVI-TNEEAEALAK-------RLQLPL 140 (162)
T ss_pred HHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCC-CHHHHHHHHH-------HCCCEE
T ss_conf 45612303126884069889999999999999976699629998405444101778-9999999999-------869879
Q ss_pred HHHHHHCCEECCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 88788659164674223348641355532102
Q gi|254780233|r 177 LYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDH 208 (624)
Q Consensus 177 ~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~ 208 (624)
+.+||++| .+++.+|+.|.+.
T Consensus 141 ~E~SAk~~-----------~nV~e~F~~la~k 161 (162)
T cd04106 141 FRTSVKDD-----------FNVTELFEYLAEK 161 (162)
T ss_pred EEECCCCC-----------CCHHHHHHHHHHH
T ss_conf 99868888-----------2989999999960
No 213
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=98.95 E-value=4e-09 Score=79.11 Aligned_cols=153 Identities=18% Similarity=0.244 Sum_probs=99.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHH
Q ss_conf 49998546898778899999983961423220000038857798709606467999998997999972898754079999
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVE 100 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVe 100 (624)
.|+++|..+-|||+|+-+++. +.+...- ..++-| + ..+...+.-+.++++|.||.|+..|..-..
T Consensus 4 Kiv~lGd~~VGKTsli~r~~~--~~f~~~~--~pTi~~----------~-~~~~i~i~~~~~~l~iwDtaGqe~~~~l~~ 68 (172)
T cd04141 4 KIVMLGAGGVGKSAVTMQFIS--HSFPDYH--DPTIED----------A-YKQQARIDNEPALLDILDTAGQAEFTAMRD 68 (172)
T ss_pred EEEEECCCCCCHHHHHHHHHH--CCCCCCC--CCCCCC----------C-EEEEEEECCEEEEEEEEECCCCCCCCCCHH
T ss_conf 999999999779999999970--9899875--884222----------0-369999999999999997888513574515
Q ss_pred HHHHHHCEEEEEEECCCCCCHHHH---HHHHHH-----HHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHC
Q ss_conf 998742178999976878864789---999999-----972997899997543667402568999998886226730110
Q gi|254780233|r 101 RILCMVESVVVLVDAAEGPMPQTK---FVVGKA-----LKIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQL 172 (624)
Q Consensus 101 r~l~~~DgaiLvVdA~eGv~~QT~---~vl~~A-----~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~l 172 (624)
.-.+-+||++||.|.++= +|- ..|..- ...++|.+++-||+|.+..|.- -.++..++-. ++
T Consensus 69 ~~~r~a~~~ilvydvt~~---~Sf~~~~~w~~~i~~~~~~~~~piilvGNK~DL~~~r~V-s~~e~~~~a~-------~~ 137 (172)
T cd04141 69 QYMRCGEGFIICYSVTDR---HSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQV-TTEEGRNLAR-------EF 137 (172)
T ss_pred HHHCCCCEEEEEECCCCH---HHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHCCC-CHHHHHHHHH-------HC
T ss_conf 564278656887316888---899999999999999728899868998504566761888-9999999999-------85
Q ss_pred CHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 42668878865916467422334864135553210245
Q gi|254780233|r 173 DFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVP 210 (624)
Q Consensus 173 d~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP 210 (624)
.+|.+.+||++| .|++.+|+.++..+-
T Consensus 138 ~~~f~EtSAk~~-----------~nV~e~F~~l~~~i~ 164 (172)
T cd04141 138 NCPFFETSAALR-----------HYIDDAFHGLVREIR 164 (172)
T ss_pred CCEEEEECCCCC-----------CCHHHHHHHHHHHHH
T ss_conf 997999747888-----------288999999999998
No 214
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=98.95 E-value=3.6e-09 Score=79.41 Aligned_cols=153 Identities=15% Similarity=0.165 Sum_probs=96.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHH
Q ss_conf 49998546898778899999983961423220000038857798709606467999998997999972898754079999
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVE 100 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVe 100 (624)
-|+++|-.+.|||+|+-+++. +.+...-.. .=|++...+...+.-+..+++|.||+|+..|..-..
T Consensus 4 KivlvGd~~VGKTsli~r~~~--~~f~~~~~~------------Tig~~~~~k~i~~~~~~~~l~iwDtaG~e~~~~~~~ 69 (166)
T cd04122 4 KYIIIGDMGVGKSCLLHQFTE--KKFMADCPH------------TIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTR 69 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHC--CCCCCCCCC------------CCCEEEEEEEEEECCEEEEEEEEECCCCCCCCCCCH
T ss_conf 999999999579999999912--988999999------------744688999999999999999998999854442521
Q ss_pred HHHHHHCEEEEEEECCCCCCHHHH---HHHH-HHHH---CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCC
Q ss_conf 998742178999976878864789---9999-9997---29978999975436674025689999988862267301104
Q gi|254780233|r 101 RILCMVESVVVLVDAAEGPMPQTK---FVVG-KALK---IGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLD 173 (624)
Q Consensus 101 r~l~~~DgaiLvVdA~eGv~~QT~---~vl~-~A~~---~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld 173 (624)
.-.+-++++|||.|... .++- .-|- .+.. .+.|++++-||+|.++.|-- ..++..++-. +..
T Consensus 70 ~~~~~a~~~ilvydvt~---~~Sf~~l~~w~~~~~~~~~~~~~iilVGNK~DL~~~r~V-~~~e~~~~a~-------~~~ 138 (166)
T cd04122 70 SYYRGAAGALMVYDITR---RSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDV-TYEEAKQFAD-------ENG 138 (166)
T ss_pred HHEECCCEEEEEECCCC---HHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHCCCC-CHHHHHHHHH-------HCC
T ss_conf 11431546599725874---767999999999999856999758703401574443899-9999999999-------869
Q ss_pred HHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 266887886591646742233486413555321024
Q gi|254780233|r 174 FPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 174 ~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
++.+.+||++| .|++.+|+.+.+.+
T Consensus 139 ~~~~E~SAk~g-----------~nV~e~F~~l~~~i 163 (166)
T cd04122 139 LLFLECSAKTG-----------ENVEDAFLETAKKI 163 (166)
T ss_pred CEEEEECCCCC-----------CCHHHHHHHHHHHH
T ss_conf 98999865878-----------08899999999999
No 215
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=98.94 E-value=6.6e-09 Score=77.68 Aligned_cols=149 Identities=18% Similarity=0.237 Sum_probs=95.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECC--EEEEEECCCCCCCCHHHH
Q ss_conf 999854689877889999998396142322000003885779870960646799999899--799997289875407999
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWND--VRINIVDTPGHADFGGEV 99 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~--~~iNiiDTPGH~DF~gEV 99 (624)
|+++|-.+-|||+|+-+++. |.+...- ..++-| ...+ .+.+++ ++++|.||+|+..|..-.
T Consensus 4 ivllGd~~VGKTsli~r~~~--~~f~~~y--~~Ti~~-----------~~~k--~i~~~~~~~~l~iwDtaG~e~~~~~~ 66 (163)
T cd04136 4 VVVLGSGGVGKSALTVQFVQ--GIFVEKY--DPTIED-----------SYRK--QIEVDGQQCMLEILDTAGTEQFTAMR 66 (163)
T ss_pred EEEECCCCCCHHHHHHHHHH--CCCCCCC--CCCCCC-----------EEEE--EEEECCEEEEEEECCCCCCHHHHHHH
T ss_conf 99989999889999999971--9598866--995420-----------6999--99999999999864576544555678
Q ss_pred HHHHHHHCEEEEEEECCCCCCHHHHH---HH-HHHHH----CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 99987421789999768788647899---99-99997----299789999754366740256899999888622673011
Q gi|254780233|r 100 ERILCMVESVVVLVDAAEGPMPQTKF---VV-GKALK----IGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQ 171 (624)
Q Consensus 100 er~l~~~DgaiLvVdA~eGv~~QT~~---vl-~~A~~----~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ 171 (624)
..-.+-+|+++||-|..+ ++|-. -| ....+ .++|.+++-||+|..+.+.- -.++...+- .+
T Consensus 67 ~~y~~~a~~~ilvydvt~---~~Sf~~l~~~~~~i~~~~~~~~~piilVGnK~Dl~~~r~v-~~~~~~~~a-------~~ 135 (163)
T cd04136 67 DLYIKNGQGFVLVYSITS---QSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVV-SREEGQALA-------RQ 135 (163)
T ss_pred HHHHCCCCEEEEEECCCC---HHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHCCC-CHHHHHHHH-------HH
T ss_conf 988346876999704898---8999999999999998618888867876235472640789-999999999-------98
Q ss_pred CCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 04266887886591646742233486413555321024
Q gi|254780233|r 172 LDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 172 ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
+.+|.+.+||++| .++..+|+.++..+
T Consensus 136 ~~~~~~E~SAk~~-----------~nV~e~F~~l~~~i 162 (163)
T cd04136 136 WGCPFYETSAKSK-----------INVDEVFADLVRQI 162 (163)
T ss_pred CCCEEEEECCCCC-----------CCHHHHHHHHHHHH
T ss_conf 4998999744878-----------05899999999963
No 216
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.94 E-value=1.2e-08 Score=76.01 Aligned_cols=154 Identities=16% Similarity=0.170 Sum_probs=93.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEE-EEEEEE-CC--EEEEEECCCCCCCCH
Q ss_conf 49998546898778899999983961423220000038857798709606467-999998-99--799997289875407
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAK-VTSIVW-ND--VRINIVDTPGHADFG 96 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~-~~~~~~-~~--~~iNiiDTPGH~DF~ 96 (624)
-|+++|-.+-|||+|+-++. .|.|...- .-||... ...+.. ++ .+++|.||+|+.+|.
T Consensus 2 KivlvGd~~VGKTsli~r~~--~~~F~~~~----------------~pTi~~~~~~~~~~~~~~~v~l~iwDtaG~e~~~ 63 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYS--QGKFPEEY----------------VPTVFENYVTNIQGPNGKIIELALWDTAGQEEYD 63 (187)
T ss_pred EEEEECCCCCCHHHHHHHHH--HCCCCCCC----------------CCCEEEEEEEEEEEECCEEEEEEEEECCCCCCCC
T ss_conf 89999949976999999996--39899975----------------8966479999999549989999999699971105
Q ss_pred HHHHHHHHHHCEEEEEEECCCCCCHHH-HHHHHHHHH---CCCCEEEEEECCCCCCCC--HHHHH-HHHHHHHHHCCCCH
Q ss_conf 999999874217899997687886478-999999997---299789999754366740--25689-99998886226730
Q gi|254780233|r 97 GEVERILCMVESVVVLVDAAEGPMPQT-KFVVGKALK---IGLRPIVVVNKVDRSDAR--ADEVI-NEVFDLFSALDATD 169 (624)
Q Consensus 97 gEVer~l~~~DgaiLvVdA~eGv~~QT-~~vl~~A~~---~~l~~IvvINKiDr~~a~--~~~v~-~ei~dlf~~l~a~d 169 (624)
.-.....+-+|++|||.|..+=---+- ...|..-.. .++|+|+|-||.|..+.+ ...|. ++...+-...++
T Consensus 64 ~l~~~~~~~a~~~ilvydit~~~Sf~~i~~~W~~~i~~~~~~~piilVgnK~DL~~~~~~~~~v~~e~~~~~a~~~~~-- 141 (187)
T cd04132 64 RLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGA-- 141 (187)
T ss_pred CCHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHCCCCCCCHHHHHHHHHHCCC--
T ss_conf 343445300348889503687677999999999999986899997999987221221223765789999999998599--
Q ss_pred HHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 1104266887886591646742233486413555321024
Q gi|254780233|r 170 AQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 170 e~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
++.+.+||++| .|+..+|+.+++.+
T Consensus 142 ----~~y~EtSAk~g-----------~nV~e~F~~l~~~i 166 (187)
T cd04132 142 ----FAYLECSAKTM-----------ENVEEVFDTAIEEA 166 (187)
T ss_pred ----CEEEEECCCCC-----------CCHHHHHHHHHHHH
T ss_conf ----78999576889-----------29899999999999
No 217
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=98.94 E-value=3.1e-08 Score=73.29 Aligned_cols=157 Identities=13% Similarity=0.151 Sum_probs=93.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEE---EEEEEEEEECCEEEEEECCCCCCCCHHH
Q ss_conf 9998546898778899999983961423220000038857798709606---4679999989979999728987540799
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITI---LAKVTSIVWNDVRINIVDTPGHADFGGE 98 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI---~a~~~~~~~~~~~iNiiDTPGH~DF~gE 98 (624)
|.++|-.+-|||+|+-+++. +.+...- --|| .++...+.-+.++++|.||+|+.+|..-
T Consensus 4 ivlvGd~~VGKTsli~r~~~--~~f~~~~----------------~~Ti~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~~ 65 (174)
T cd01871 4 CVVVGDGAVGKTCLLISYTT--NAFPGEY----------------IPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRL 65 (174)
T ss_pred EEEECCCCCCHHHHHHHHHH--CCCCCCC----------------CCEEEEEEEEEEEECCEEEEEEEECCCCCCCCHHH
T ss_conf 99989999869999999973--9999986----------------88378876799999999999999869997240678
Q ss_pred HHHHHHHHCEEEEEEECCCCC-CHHHHHHHHHHHH---CCCCEEEEEECCCCCCCCHHHHHHHHHHH-HHHCCCC-----
Q ss_conf 999987421789999768788-6478999999997---29978999975436674025689999988-8622673-----
Q gi|254780233|r 99 VERILCMVESVVVLVDAAEGP-MPQTKFVVGKALK---IGLRPIVVVNKVDRSDARADEVINEVFDL-FSALDAT----- 168 (624)
Q Consensus 99 Ver~l~~~DgaiLvVdA~eGv-~~QT~~vl~~A~~---~~l~~IvvINKiDr~~a~~~~v~~ei~dl-f~~l~a~----- 168 (624)
.....+-+|++|||-|-.+-- ....+.-|..... -+.|+|++-||+|..+.+. ..+.+.+- ...+...
T Consensus 66 ~~~~~~~a~~~ilvydi~~~~SF~~i~~~w~~~i~~~~~~~piiLVGnK~DL~~~~~--~~~~~~~~~~~~vs~~eg~~~ 143 (174)
T cd01871 66 RPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD--TIEKLKEKKLTPITYPQGLAM 143 (174)
T ss_pred HHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHH--HHHHHHHCCCCCCCHHHHHHH
T ss_conf 899874066899998679878899999999999998588999798747301310045--677886514677589999999
Q ss_pred HHHCC-HHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 01104-266887886591646742233486413555321024
Q gi|254780233|r 169 DAQLD-FPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 169 de~ld-~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
..++. ++.+.+||++| .|+..+|+.++..+
T Consensus 144 a~~~~~~~f~EtSAk~~-----------~nV~e~F~~lir~i 174 (174)
T cd01871 144 AKEIGAVKYLECSALTQ-----------KGLKTVFDEAIRAV 174 (174)
T ss_pred HHHCCCCEEEECCCCCC-----------CCHHHHHHHHHHHC
T ss_conf 98759978999187889-----------59799999999519
No 218
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=98.93 E-value=2.5e-08 Score=73.84 Aligned_cols=150 Identities=12% Similarity=0.091 Sum_probs=91.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHHH
Q ss_conf 99985468987788999999839614232200000388577987096064679999989979999728987540799999
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVER 101 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVer 101 (624)
|+++|..+-|||+|+-+++. +.+...- ..+ +....++...+..+.++++|.||+|+.+|..-...
T Consensus 3 vvlvGd~~VGKTsli~r~~~--~~F~~~y--~pT-----------~~~~~~~~i~~~~~~v~l~iwDtaG~e~~~~l~~~ 67 (173)
T cd04130 3 CVLVGDGAVGKTSLIVSYTT--NGYPTEY--VPT-----------AFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPL 67 (173)
T ss_pred EEEECCCCCCHHHHHHHHHH--CCCCCCC--CCC-----------EEEEEEEEEEECCEEEEEEEEECCCCCCCCHHHHH
T ss_conf 99999899788999999961--9999985--783-----------58999999999999999999989987344345676
Q ss_pred HHHHHCEEEEEEECCCCCCHHHH----HHHHHHHH---CCCCEEEEEECCCCCCCCH----------HHH-HHHHHHHHH
Q ss_conf 98742178999976878864789----99999997---2997899997543667402----------568-999998886
Q gi|254780233|r 102 ILCMVESVVVLVDAAEGPMPQTK----FVVGKALK---IGLRPIVVVNKVDRSDARA----------DEV-INEVFDLFS 163 (624)
Q Consensus 102 ~l~~~DgaiLvVdA~eGv~~QT~----~vl~~A~~---~~l~~IvvINKiDr~~a~~----------~~v-~~ei~dlf~ 163 (624)
..+-+|++|||-|-.+= ++- ..|..-.+ -+.|+|++-||.|...... ..| .++...+-.
T Consensus 68 ~~~~a~~~ilvydv~~~---~Sf~~l~~~w~~~i~~~~~~~piilvGnK~DL~~~~~~~~~~~~~~~r~Vs~~e~~~~a~ 144 (173)
T cd04130 68 CYPDTDVFLLCFSVVNP---SSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAE 144 (173)
T ss_pred HHCCCCEEEEEEECCCH---HHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 61378789999965987---889999999999999609899889998870110013355444332575578999999999
Q ss_pred HCCCCHHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHH
Q ss_conf 2267301104266887886591646742233486413555321
Q gi|254780233|r 164 ALDATDAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIV 206 (624)
Q Consensus 164 ~l~a~de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii 206 (624)
++++ .+.+.+||++| .|++.+||.++
T Consensus 145 ~~~~------~~y~EtSAkt~-----------~nV~e~Fe~~i 170 (173)
T cd04130 145 KIGA------CEYIECSALTQ-----------KNLKEVFDTAI 170 (173)
T ss_pred HCCC------CEEEEECCCCC-----------CCHHHHHHHHH
T ss_conf 8499------68999686889-----------69799999998
No 219
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=98.93 E-value=2.3e-08 Score=74.17 Aligned_cols=152 Identities=16% Similarity=0.125 Sum_probs=94.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHHH
Q ss_conf 99985468987788999999839614232200000388577987096064679999989979999728987540799999
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVER 101 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVer 101 (624)
|+++|...-|||+|+-+.. .+.+..... .++.| -.++...+..+.++++|.||+|..+|..-..-
T Consensus 4 ivllGd~~VGKTsL~~rf~--~~~F~~~~~--pTi~~-----------~~~~~i~v~~~~~~l~iwDTaG~e~~~~l~~~ 68 (176)
T cd04133 4 CVTVGDGAVGKTCMLICYT--SNKFPTDYI--PTVFD-----------NFSANVSVDGNTVNLGLWDTAGQEDYNRLRPL 68 (176)
T ss_pred EEEECCCCCCHHHHHHHHH--HCCCCCCCC--CCEEE-----------EEEEEEEECCEEEEEEEEECCCCCCCCHHHHH
T ss_conf 9998999977999999996--598999867--85358-----------99999999998999999979997654246898
Q ss_pred HHHHHCEEEEEEECCCCCCHHHH----HHHHHHH---HCCCCEEEEEECCCCCCCCHHH--------H-HHHHHHHHHHC
Q ss_conf 98742178999976878864789----9999999---7299789999754366740256--------8-99999888622
Q gi|254780233|r 102 ILCMVESVVVLVDAAEGPMPQTK----FVVGKAL---KIGLRPIVVVNKVDRSDARADE--------V-INEVFDLFSAL 165 (624)
Q Consensus 102 ~l~~~DgaiLvVdA~eGv~~QT~----~vl~~A~---~~~l~~IvvINKiDr~~a~~~~--------v-~~ei~dlf~~l 165 (624)
..+-+|++|||-|-..= +|- ..|..-+ .-+.|.|++-||+|..+.+-.. | ..+-..+-
T Consensus 69 ~y~~a~~~ilvydi~~~---~Sf~~~~~~w~~~~~~~~~~~piilvGnK~DL~~~r~~~~~~~~~~~Vs~~e~~~~a--- 142 (176)
T cd04133 69 SYRGADVFVLAFSLISR---ASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELR--- 142 (176)
T ss_pred HHCCCCEEEEEEECCCH---HHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHCHHHHHHCCCCCCCCHHHHHHHH---
T ss_conf 72678757999978987---899999999999999868499889999863202122233330246777799999999---
Q ss_pred CCCHHHCCHH-HHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 6730110426-6887886591646742233486413555321024
Q gi|254780233|r 166 DATDAQLDFP-ILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 166 ~a~de~ld~P-v~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
.++..+ .+.+||++| .|++.+|+.+++.+
T Consensus 143 ----~~~~~~~y~EtSAk~~-----------~nV~e~F~~~~~~i 172 (176)
T cd04133 143 ----KQIGAAAYIECSSKTQ-----------QNVKAVFDAAIKVV 172 (176)
T ss_pred ----HHCCCCEEEEECCCCC-----------CCHHHHHHHHHHHH
T ss_conf ----9779978999478988-----------09899999999998
No 220
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=98.92 E-value=2.1e-08 Score=74.32 Aligned_cols=156 Identities=15% Similarity=0.162 Sum_probs=92.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHH
Q ss_conf 49998546898778899999983961423220000038857798709606467999998997999972898754079999
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVE 100 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVe 100 (624)
-|+++|..+.|||+|+-+++. +.+...- ..++.|. .++...+.-+.+.++|.||+|+.+|..-..
T Consensus 2 Kiv~vGd~~VGKTsli~rf~~--~~f~~~y--~pTi~~~-----------~~~~i~v~~~~~~l~i~DTaG~e~~~~~~~ 66 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYAN--DAFPEEY--VPTVFDH-----------YAVSVTVGGKQYLLGLYDTAGQEDYDRLRP 66 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHH--CCCCCCC--CCEEEEE-----------EEEEEEECCEEEEEEEEECCCCCCCHHHHH
T ss_conf 899999899859999999962--9899886--8857520-----------227999999999999997976403155659
Q ss_pred HHHHHHCEEEEEEECCCC-CCHHHHHHHHHHHH---CCCCEEEEEECCCCCCCCH----------HHH-HHHHHHHHHHC
Q ss_conf 998742178999976878-86478999999997---2997899997543667402----------568-99999888622
Q gi|254780233|r 101 RILCMVESVVVLVDAAEG-PMPQTKFVVGKALK---IGLRPIVVVNKVDRSDARA----------DEV-INEVFDLFSAL 165 (624)
Q Consensus 101 r~l~~~DgaiLvVdA~eG-v~~QT~~vl~~A~~---~~l~~IvvINKiDr~~a~~----------~~v-~~ei~dlf~~l 165 (624)
...+-+|+++||-|-.+= -....+..|..-.. -++|.|++=||+|+.+... ..| .+|-..+-.++
T Consensus 67 ~~~~~a~~~ilvydi~~~~Sf~~~~~~w~~~~~~~~~~~piilvgnK~DL~~~~~~~~~~~~~~~r~Vs~eeg~~~A~~~ 146 (174)
T cd04135 67 LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEI 146 (174)
T ss_pred HHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHCCCHHHHHHHCCCCCCCCCHHHHHHHHHHC
T ss_conf 98557876789843797788999999999999986849988999685230044345545300457663999999999977
Q ss_pred CCCHHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 6730110426688788659164674223348641355532102
Q gi|254780233|r 166 DATDAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDH 208 (624)
Q Consensus 166 ~a~de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~ 208 (624)
++ .+.+.+||++| .|++.+|+.++..
T Consensus 147 g~------~~f~E~SAkt~-----------~nV~e~F~~~i~~ 172 (174)
T cd04135 147 GA------HCYVECSALTQ-----------KGLKTVFDEAILA 172 (174)
T ss_pred CC------CEEEEECCCCC-----------CCHHHHHHHHHHH
T ss_conf 99------89999054879-----------4989999999999
No 221
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.91 E-value=1.5e-08 Score=75.29 Aligned_cols=155 Identities=20% Similarity=0.229 Sum_probs=94.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHH-H
Q ss_conf 999854689877889999998396142322000003885779870960646799999899799997289875407999-9
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEV-E 100 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEV-e 100 (624)
|+++|-..-|||+|+.+++. +.+...- ..++ |. ...+.+.+.-+.++++|.||+|...|..-. .
T Consensus 2 iv~vGd~~VGKTsli~rf~~--~~f~~~y--~~T~----------~~-~~~~~~~v~~~~~~l~iwDtaG~e~~~~~~~~ 66 (165)
T cd04146 2 IAVLGASGVGKSALVVRFLT--KRFIGEY--DPNL----------ES-LYSRQVTIDGEQVSLEILDTAGQQQADTEQLE 66 (165)
T ss_pred EEEECCCCCCHHHHHHHHHH--CCCCCCC--CCCC----------CC-EEEEEEEECCEEEEEEEEECCCCCCCCHHHHH
T ss_conf 99999899778999999974--9899875--9955----------63-05799999999999999928985012201255
Q ss_pred HHHHHHCEEEEEEECCCCCCHHHHHHHHHHH-H-----CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCH
Q ss_conf 9987421789999768788647899999999-7-----299789999754366740256899999888622673011042
Q gi|254780233|r 101 RILCMVESVVVLVDAAEGPMPQTKFVVGKAL-K-----IGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDF 174 (624)
Q Consensus 101 r~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~-~-----~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~ 174 (624)
+-++-+|++|||-|..+=---+.-.-|..-. + .++|.|++-||+|.++.|.- -.++...+-. ++.+
T Consensus 67 ~~~~~a~~~ilvydit~~~Sf~~~~~~~~~i~~~~~~~~~~piilVGNK~DL~~~r~V-s~ee~~~~a~-------~~~~ 138 (165)
T cd04146 67 RSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQV-STEEGEKLAS-------ELGC 138 (165)
T ss_pred HHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCC-CHHHHHHHHH-------HCCC
T ss_conf 4304587899998658889999999999999998466999539984455452103677-9999999999-------8199
Q ss_pred HHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 66887886591646742233486413555321024
Q gi|254780233|r 175 PILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 175 Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
+.+.+||+.|+ .|++.+|+.++..+
T Consensus 139 ~f~E~SAk~~~----------~~V~~~F~~l~~~i 163 (165)
T cd04146 139 LFFEVSAAEDY----------DGVHSVFHELCREV 163 (165)
T ss_pred EEEEEECCCCC----------CCHHHHHHHHHHHH
T ss_conf 89997520878----------26999999999996
No 222
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=98.90 E-value=2.6e-08 Score=73.75 Aligned_cols=150 Identities=19% Similarity=0.210 Sum_probs=94.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEE--EEEEEECC--EEEEEECCCCCCCCHH
Q ss_conf 9998546898778899999983961423220000038857798709606467--99999899--7999972898754079
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAK--VTSIVWND--VRINIVDTPGHADFGG 97 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~--~~~~~~~~--~~iNiiDTPGH~DF~g 97 (624)
|.++|..+-|||+|+-+++. +.+.... .--||... ...+..++ .+++|.||+|...|..
T Consensus 3 ivlvGd~~VGKTsLi~r~~~--~~f~~~~---------------y~~tig~~~~~k~i~v~~~~v~l~iwDtaG~e~~~~ 65 (193)
T cd04118 3 VVMLGKESVGKTSLVERYVH--HRFLVGP---------------YQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEA 65 (193)
T ss_pred EEEECCCCCCHHHHHHHHHH--CCCCCCC---------------CCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHH
T ss_conf 99999699879999999985--9799899---------------787630588999999999999999991999731235
Q ss_pred HHHHHHHHHCEEEEEEECCCCCCHHHH---HHHHHHH---HCCCCEEEEEECCCCCCC--CHHHH-HHHHHHHHHHCCCC
Q ss_conf 999998742178999976878864789---9999999---729978999975436674--02568-99999888622673
Q gi|254780233|r 98 EVERILCMVESVVVLVDAAEGPMPQTK---FVVGKAL---KIGLRPIVVVNKVDRSDA--RADEV-INEVFDLFSALDAT 168 (624)
Q Consensus 98 EVer~l~~~DgaiLvVdA~eGv~~QT~---~vl~~A~---~~~l~~IvvINKiDr~~a--~~~~v-~~ei~dlf~~l~a~ 168 (624)
-...-.+-+|++|||.|-.+= +|- .-|..-+ .-+.|+++|-||+|.... +..+| .++..++-.+++
T Consensus 66 l~~~y~~~a~~~ilvydit~~---~Sf~~i~~W~~~i~~~~~~~~iilVGnK~DL~~~~~~~r~V~~~e~~~~a~~~~-- 140 (193)
T cd04118 66 MSRIYYRGAKAAIVCYDLTDS---SSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIK-- 140 (193)
T ss_pred HHHHHHCCCCEEEEEECCCCH---HHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHCCCCCCCCCHHHHHHHHHHCC--
T ss_conf 579883477445788306987---999989999999997489999799977466322016664468999999999809--
Q ss_pred HHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 01104266887886591646742233486413555321024
Q gi|254780233|r 169 DAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 169 de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
++.+.+||++| .|++.+|+.|.+.+
T Consensus 141 -----~~~~E~SAktg-----------~nV~e~F~~la~~i 165 (193)
T cd04118 141 -----AQHFETSSKTG-----------QNVDELFQKVAEDF 165 (193)
T ss_pred -----CEEEEECCCCC-----------CCHHHHHHHHHHHH
T ss_conf -----96999838989-----------39899999999999
No 223
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=98.90 E-value=2e-08 Score=74.48 Aligned_cols=151 Identities=19% Similarity=0.291 Sum_probs=89.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEE-CCEEEEEECCCCCCCC
Q ss_conf 243149998546898778899999983961423220000038857798709606467999998-9979999728987540
Q gi|254780233|r 17 MQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVW-NDVRINIVDTPGHADF 95 (624)
Q Consensus 17 ~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~-~~~~iNiiDTPGH~DF 95 (624)
..+-.||++|--.+|||||..+| ||. .-.++|.. .-|.-...-.+.+ ++.++-+.||+|....
T Consensus 187 ~~~p~ValVGYTNAGKSTL~n~L---t~~---~~~~~d~l----------FaTLd~t~r~~~l~~~~~~ll~DTVGFI~~ 250 (351)
T TIGR03156 187 AGVPTVALVGYTNAGKSTLFNAL---TGA---DVYAADQL----------FATLDPTTRRLDLPDGGEVLLTDTVGFIRD 250 (351)
T ss_pred CCCCEEEEECCCCCCHHHHHHHH---HHC---CCCCCCCC----------EEECCCCCCEEECCCCCEEEEEECCCHHHH
T ss_conf 49976999667887789999998---517---76410343----------135367320488799976999815005630
Q ss_pred ---------HHHHHHHHHHHCEEEEEEECCC-CCCHHHHHHHHHHHHC---CCCEEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf ---------7999999874217899997687-8864789999999972---99789999754366740256899999888
Q gi|254780233|r 96 ---------GGEVERILCMVESVVVLVDAAE-GPMPQTKFVVGKALKI---GLRPIVVVNKVDRSDARADEVINEVFDLF 162 (624)
Q Consensus 96 ---------~gEVer~l~~~DgaiLvVdA~e-Gv~~QT~~vl~~A~~~---~l~~IvvINKiDr~~a~~~~v~~ei~dlf 162 (624)
-.-.|. ..-+|-.|.|||+.+ ..+.|-..|..-..+. +.|.|+|.||+|+-+.. -...+..
T Consensus 251 LP~~Li~aF~sTLee-~~~aDlllhVvD~S~~~~~~~~~~v~~~L~elg~~~~p~i~V~NKiD~~~~~---~~~~~~~-- 324 (351)
T TIGR03156 251 LPHELVAAFRATLEE-VREADLLLHVVDASDPDREEQIEAVEEVLEELGAEDIPQLLVYNKIDLLDEP---RIERLEE-- 324 (351)
T ss_pred CCHHHHHHHHHHHHH-HHHCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECHHCCCHH---HHHHHHH--
T ss_conf 886799999999999-9859899998058884789999999999997699999889999670158957---7899873--
Q ss_pred HHCCCCHHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 62267301104266887886591646742233486413555321024
Q gi|254780233|r 163 SALDATDAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 163 ~~l~a~de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
... ..++.||++| .|++.|.+.|.+.+
T Consensus 325 ---~~~------~~v~ISA~~g-----------~gi~~L~~~I~~~L 351 (351)
T TIGR03156 325 ---GYP------EAVFVSAKTG-----------EGLDLLLEAIAERL 351 (351)
T ss_pred ---CCC------CEEEEECCCC-----------CCHHHHHHHHHHHC
T ss_conf ---799------8799968999-----------89999999999559
No 224
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=98.90 E-value=2.9e-08 Score=73.45 Aligned_cols=150 Identities=18% Similarity=0.195 Sum_probs=91.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEE-EEEEEECC--EEEEEECCCCCCCCHH
Q ss_conf 49998546898778899999983961423220000038857798709606467-99999899--7999972898754079
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAK-VTSIVWND--VRINIVDTPGHADFGG 97 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~-~~~~~~~~--~~iNiiDTPGH~DF~g 97 (624)
-|+++|..+-|||+|+-++. .+.+...-. -||... ...+..++ .++.|.||+|+.+|..
T Consensus 3 Ki~liGd~~VGKTsli~r~~--~~~F~~~y~----------------pTi~~~~~~~i~~~~~~v~l~iwDtaG~e~~~~ 64 (175)
T cd01870 3 KLVIVGDGACGKTCLLIVFS--KDQFPEVYV----------------PTVFENYVADIEVDGKQVELALWDTAGQEDYDR 64 (175)
T ss_pred EEEEECCCCCCHHHHHHHHH--CCCCCCCCC----------------CCEEEEEEEEEEECCEEEEEEEEECCCCCCCCC
T ss_conf 99999989966999999997--098999847----------------843689999999999999999997776613232
Q ss_pred HHHHHHHHHCEEEEEEECCCCCCHHHH----HHHHHHHH---CCCCEEEEEECCCCCCCCHH-H---------H-HHHHH
Q ss_conf 999998742178999976878864789----99999997---29978999975436674025-6---------8-99999
Q gi|254780233|r 98 EVERILCMVESVVVLVDAAEGPMPQTK----FVVGKALK---IGLRPIVVVNKVDRSDARAD-E---------V-INEVF 159 (624)
Q Consensus 98 EVer~l~~~DgaiLvVdA~eGv~~QT~----~vl~~A~~---~~l~~IvvINKiDr~~a~~~-~---------v-~~ei~ 159 (624)
-.....+-++++||+-|..+- ++- ..|..-.. .+.|+|++-||+|..+.+.. . | .+|..
T Consensus 65 ~~~~~~~~a~~~ilvydi~~~---~Sf~~~~~~w~~~i~~~~~~~piilVgnK~DL~~~~~~~~~~~~~~~~~V~~~eg~ 141 (175)
T cd01870 65 LRPLSYPDTDVILMCFSIDSP---DSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGR 141 (175)
T ss_pred CHHHHHCCCCEEEEEEECCCH---HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCHHHHH
T ss_conf 404431488789999865987---99999999999999972989989999872433433234566654025566899999
Q ss_pred HHHHHCCCCHHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 8886226730110426688788659164674223348641355532102
Q gi|254780233|r 160 DLFSALDATDAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDH 208 (624)
Q Consensus 160 dlf~~l~a~de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~ 208 (624)
.+-..+++ .+.+.+||++| .|+..+|+.++..
T Consensus 142 ~~a~~~~~------~~f~EtSAk~~-----------~nV~e~Fe~~~k~ 173 (175)
T cd01870 142 DMANKIGA------FGYMECSAKTK-----------EGVREVFEMATRA 173 (175)
T ss_pred HHHHHCCC------CEEEEECCCCC-----------CCHHHHHHHHHHH
T ss_conf 99997499------78999768999-----------7989999999998
No 225
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=98.88 E-value=2.4e-08 Score=73.94 Aligned_cols=155 Identities=19% Similarity=0.242 Sum_probs=94.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHHH
Q ss_conf 99985468987788999999839614232200000388577987096064679999989979999728987540799999
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVER 101 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVer 101 (624)
|.++|..+-|||+|+-+.. .+.|... --||......-.|+.+.++|.||+|...|..-..-
T Consensus 3 ivllGd~~VGKTsl~~rf~--~~~F~~~-----------------~~Tig~~~~~k~~~~~~l~IwDTaGqE~f~sl~~~ 63 (220)
T cd04126 3 VVLLGDMNVGKTSLLHRYM--ERRFKDT-----------------VSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSM 63 (220)
T ss_pred EEEECCCCCCHHHHHHHHH--HCCCCCC-----------------CCCCCEEEEEEECCEEEEEEEECCCCCCCCCCHHH
T ss_conf 9999999988999999997--2989998-----------------88713689998764788999947986224332688
Q ss_pred HHHHHCEEEEEEECCCCCCHHHHH-H--H-HHHHH---CCCCEEEEEECCCCCCCC-----------------HHHH-HH
Q ss_conf 987421789999768788647899-9--9-99997---299789999754366740-----------------2568-99
Q gi|254780233|r 102 ILCMVESVVVLVDAAEGPMPQTKF-V--V-GKALK---IGLRPIVVVNKVDRSDAR-----------------ADEV-IN 156 (624)
Q Consensus 102 ~l~~~DgaiLvVdA~eGv~~QT~~-v--l-~~A~~---~~l~~IvvINKiDr~~a~-----------------~~~v-~~ 156 (624)
-.+-++++|||-|...- +|-. + | ....+ ...++|++-||+|..+-. ...| .+
T Consensus 64 y~r~a~~~ilvyDit~~---~Sf~~l~~~~~~~~~~~~~~~~~ilVGNK~DL~~~~~~~~~~~~~~~~~~~~~~r~Vs~e 140 (220)
T cd04126 64 YCRGAAAVILTYDVSNV---QSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLE 140 (220)
T ss_pred HHCCCCEEEEEEECCCH---HHHHHHHHHHHHHHHHCCCCCEEEEEEECHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 85679889999979898---999999999999998479998089998871213643443333333223441003544899
Q ss_pred HHHHHHHHCCC---CHHH----CCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 99988862267---3011----04266887886591646742233486413555321024
Q gi|254780233|r 157 EVFDLFSALDA---TDAQ----LDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 157 ei~dlf~~l~a---~de~----ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
+...+-.+++. .++. -..|.+.+||++| .|++.+|+.|++.+
T Consensus 141 e~~~~a~~~~~~~~~~~~~~~~~~~~~fEtSAKtg-----------~nV~e~F~~i~~~i 189 (220)
T cd04126 141 DAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTG-----------YNVDELFEYLFNLV 189 (220)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCC-----------CCHHHHHHHHHHHH
T ss_conf 99999998502202221111245776999147899-----------79899999999999
No 226
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=98.88 E-value=1.9e-08 Score=74.69 Aligned_cols=147 Identities=20% Similarity=0.260 Sum_probs=92.5
Q ss_pred ECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHHHHHH
Q ss_conf 85468987788999999839614232200000388577987096064679999989979999728987540799999987
Q gi|254780233|r 25 IAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVERILC 104 (624)
Q Consensus 25 iaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVer~l~ 104 (624)
||..+-|||||+-+.+ .|.|...-.. ++ |+....+.....-+..+++|.||.|...|.+-...-.+
T Consensus 1 vGD~gVGKTsli~R~~--~~~F~~~y~p--Ti----------Gvd~~~~~~~~~~~~i~l~iWDTAGqE~f~sl~~~yyr 66 (200)
T smart00176 1 VGDGGTGKTTFVKRHL--TGEFEKKYVA--TL----------GVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYI 66 (200)
T ss_pred CCCCCCCHHHHHHHHH--CCCCCCCCCC--CE----------EEEEEEEEEEECCEEEEEEEEECCCCCCCCCCCHHHCC
T ss_conf 9898878999999994--0999999788--71----------48989999998998999999989887000110265505
Q ss_pred HHCEEEEEEECCCCCCHHHH---HHHHHHH---HCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHH
Q ss_conf 42178999976878864789---9999999---72997899997543667402568999998886226730110426688
Q gi|254780233|r 105 MVESVVVLVDAAEGPMPQTK---FVVGKAL---KIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFPILY 178 (624)
Q Consensus 105 ~~DgaiLvVdA~eGv~~QT~---~vl~~A~---~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~Pv~~ 178 (624)
-+++||||-|.+.= +|- .-|.+-+ ..++|+|+|-||+|..+-. |..+-.. |.. +..++.+.
T Consensus 67 ~a~~~IlvfDvt~~---~SF~~l~~W~~~l~~~~~~ipiiLvGNK~DL~~r~---V~~e~~~-~a~------~~~~~y~E 133 (200)
T smart00176 67 QGQCAIIMFDVTAR---VTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRK---VKAKSIT-FHR------KKNLQYYD 133 (200)
T ss_pred CCCEEEEEEECCCH---HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC---CCHHHHH-HHH------HCCCCEEE
T ss_conf 78788999635877---89998999999999857999889999887574043---6599999-999------87997898
Q ss_pred HHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 7886591646742233486413555321024
Q gi|254780233|r 179 GSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 179 ~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
.|||+| .+++.+|..+...+
T Consensus 134 tSAKt~-----------~Nv~e~F~~Lar~L 153 (200)
T smart00176 134 ISAKSN-----------YNFEKPFLWLARKL 153 (200)
T ss_pred EECCCC-----------CCHHHHHHHHHHHH
T ss_conf 300469-----------69799999999998
No 227
>PRK12299 obgE GTPase ObgE; Reviewed
Probab=98.87 E-value=5.9e-08 Score=71.45 Aligned_cols=153 Identities=25% Similarity=0.350 Sum_probs=94.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECC-EEEEEECCCCC----
Q ss_conf 4314999854689877889999998396142322000003885779870960646799999899-79999728987----
Q gi|254780233|r 18 QIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWND-VRINIVDTPGH---- 92 (624)
Q Consensus 18 ~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~-~~iNiiDTPGH---- 92 (624)
-|-.|++||--.+|||||.-+| |.+-.+-+ ||- --|+.-..-.+.|.+ ..|.+.|.||-
T Consensus 157 liADVgLVG~PNaGKSTLl~~i---s~A~pkIa-------~Yp------FTTl~P~lGvv~~~d~~~~~iaDiPGlIegA 220 (334)
T PRK12299 157 LLADVGLVGLPNAGKSTLISSV---SAAKPKIA-------DYP------FTTLHPNLGVVRVDDYKSFVIADIPGLIEGA 220 (334)
T ss_pred EECCCEEEECCCCCHHHHHHHH---HCCCCCCC-------CCC------CEECCCEEEEEEECCCCEEEEEECCCCCCCC
T ss_conf 4403014636987466999987---64764335-------787------3003875479994688678998667433552
Q ss_pred -C------CCHHHHHHHHHHHCEEEEEEECCCC-CCHHHHHHHHHHHH-----CCCCEEEEEECCCCCCCCHHHHHHHHH
Q ss_conf -5------4079999998742178999976878-86478999999997-----299789999754366740256899999
Q gi|254780233|r 93 -A------DFGGEVERILCMVESVVVLVDAAEG-PMPQTKFVVGKALK-----IGLRPIVVVNKVDRSDARADEVINEVF 159 (624)
Q Consensus 93 -~------DF~gEVer~l~~~DgaiLvVdA~eG-v~~QT~~vl~~A~~-----~~l~~IvvINKiDr~~a~~~~v~~ei~ 159 (624)
. .|-..+|| +...+.|||+... |..+-+.+.+.... ...|.++++||||..++ ++..+.+.
T Consensus 221 ~~g~GLG~~FLrHieR----~~~L~~viD~s~~d~~~~~~~l~~EL~~y~~~L~~Kp~ivvlNK~Dl~~~--~~~~~~~~ 294 (334)
T PRK12299 221 SEGAGLGHRFLKHIER----TRLLLHLVDASSEDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDE--EERKEKIK 294 (334)
T ss_pred CCCCCCHHHHHHHHHH----CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCH--HHHHHHHH
T ss_conf 3477747899876653----43699999799889899999999999985065536987999988106885--67899999
Q ss_pred HHHHHCCCCHHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 888622673011042668878865916467422334864135553210245
Q gi|254780233|r 160 DLFSALDATDAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVP 210 (624)
Q Consensus 160 dlf~~l~a~de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP 210 (624)
.+...+ ..|+++.||.+| .|++.|++.|.+.+-
T Consensus 295 ~~~~~~-------~~~v~~ISA~~g-----------~Gl~eL~~~i~~~L~ 327 (334)
T PRK12299 295 ELIKAL-------GGPVFLISAVTG-----------EGLDELLRALWEFLK 327 (334)
T ss_pred HHHHHC-------CCCEEEEECCCC-----------CCHHHHHHHHHHHHH
T ss_conf 999870-------996899978778-----------499999999999999
No 228
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=98.82 E-value=6.8e-08 Score=71.02 Aligned_cols=158 Identities=17% Similarity=0.229 Sum_probs=97.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHHH
Q ss_conf 99985468987788999999839614232200000388577987096064679999989979999728987540799999
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVER 101 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVer 101 (624)
|.++|..+-|||+|+-+.+ .|.|...- ..++.| ...+...+.-+.++++|.||.|...|..-..-
T Consensus 3 IvvlGdsgVGKTSLi~Rf~--~~~F~~~y--~pTi~d-----------~~~k~i~i~g~~v~L~IwDTaGqe~f~sl~~~ 67 (247)
T cd04143 3 MVVLGASKVGKTAIVSRFL--GGRFEEQY--TPTIED-----------FHRKLYSIRGEVYQLDILDTSGNHPFPAMRRL 67 (247)
T ss_pred EEEECCCCCCHHHHHHHHH--CCCCCCCC--CCCHHH-----------EEEEEEEECCEEEEEEEEECCCCCCCCCCHHH
T ss_conf 9999989978999999996--49689987--888353-----------18899999999999999967665368744201
Q ss_pred HHHHHCEEEEEEECCCCCCHHHHHHHHH-H------------HHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 9874217899997687886478999999-9------------97299789999754366740256899999888622673
Q gi|254780233|r 102 ILCMVESVVVLVDAAEGPMPQTKFVVGK-A------------LKIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDAT 168 (624)
Q Consensus 102 ~l~~~DgaiLvVdA~eGv~~QT~~vl~~-A------------~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~ 168 (624)
..+-+|++|||-|-++---=+.-.-|.. . ...++|+|+|=||.|++..|-- -.+|..++. |.
T Consensus 68 y~~~a~~~IlVYDITnr~SFe~v~~w~~~I~e~k~~~~~~~~~~~~vpiiLVGNK~DL~~~R~V-s~eEa~~~~----A~ 142 (247)
T cd04143 68 SILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREV-QRDEVEQLV----GG 142 (247)
T ss_pred HHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCHHCCCC-CHHHHHHHH----HH
T ss_conf 3121778999997998789998999999999864001001357888758998665543201787-999999999----97
Q ss_pred HHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCCC
Q ss_conf 01104266887886591646742233486413555321024542
Q gi|254780233|r 169 DAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPP 212 (624)
Q Consensus 169 de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~P 212 (624)
+ ...+.+.+||++| .+++.+|.++....--|
T Consensus 143 ~--~~~~f~EtSAKt~-----------~NV~E~F~~L~~~~~l~ 173 (247)
T cd04143 143 D--ENCAYFEVSAKKN-----------SNLDEMFRALFSLAKLP 173 (247)
T ss_pred H--CCCEEEECCCCCC-----------CCHHHHHHHHHHHCCCC
T ss_conf 6--8987998878999-----------49899999999854998
No 229
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=98.82 E-value=3.9e-08 Score=72.60 Aligned_cols=156 Identities=14% Similarity=0.147 Sum_probs=95.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHH
Q ss_conf 49998546898778899999983961423220000038857798709606467999998997999972898754079999
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVE 100 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVe 100 (624)
.|+++|-..-|||+|+-+.+. |.+..... . -.-|.....+...+.-+...+.|+||+|..+|.-.
T Consensus 2 KVvllGd~gVGKTSLi~rf~~--~~f~~~~y-~----------~t~~~d~~~k~v~vd~~~~~l~i~Dt~g~e~~~~~-- 66 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTS--GEYDDHAY-D----------ASGDDDTYERTVSVDGEESTLVVIDHWEQEMWTED-- 66 (221)
T ss_pred EEEEECCCCCHHHHHHHHHHH--CCCCCCCC-C----------CCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHH--
T ss_conf 799999899709999999981--98698667-8----------74424889999999999989999989873126666--
Q ss_pred HHH-HHHCEEEEEEECCCCCCH-HHHHHHHHHH----HCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCH
Q ss_conf 998-742178999976878864-7899999999----7299789999754366740256899999888622673011042
Q gi|254780233|r 101 RIL-CMVESVVVLVDAAEGPMP-QTKFVVGKAL----KIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDF 174 (624)
Q Consensus 101 r~l-~~~DgaiLvVdA~eGv~~-QT~~vl~~A~----~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~ 174 (624)
..+ ..+|+++||-|.++=--= .....|.... ..++|+|+|=||+|....|-- -.+|-.++- .++++
T Consensus 67 ~~~~~~ada~ilVYdvtdr~SF~~~~~~~~~l~~~~~~~~~piILVGNK~DL~~~R~V-s~eEg~~~A-------~~~~~ 138 (221)
T cd04148 67 SCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREV-SVQEGRACA-------VVFDC 138 (221)
T ss_pred HHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHCCC-CHHHHHHHH-------HHCCC
T ss_conf 5653068689999964667788889999999998648999519998535666863899-999999999-------98599
Q ss_pred HHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 668878865916467422334864135553210245
Q gi|254780233|r 175 PILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVP 210 (624)
Q Consensus 175 Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP 210 (624)
+.+.+||+.| .+++.+|+.++..+-
T Consensus 139 ~F~EtSAk~~-----------~NV~elF~~lvrqIr 163 (221)
T cd04148 139 KFIETSAGLQ-----------HNVDELLEGIVRQIR 163 (221)
T ss_pred EEEECCCCCC-----------CCHHHHHHHHHHHHH
T ss_conf 8999457999-----------498999999999998
No 230
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=98.81 E-value=7.2e-08 Score=70.88 Aligned_cols=154 Identities=18% Similarity=0.196 Sum_probs=98.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEEC-CEEEEEECCCCCCCCHHHHH
Q ss_conf 99985468987788999999839614232200000388577987096064679999989-97999972898754079999
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWN-DVRINIVDTPGHADFGGEVE 100 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~-~~~iNiiDTPGH~DF~gEVe 100 (624)
|.++|-.+-|||+|+-+++. +.|...-.. + =|+-..++...+.-+ ..+++|.||+|+..|..-..
T Consensus 3 vvllGd~~VGKTSli~rf~~--~~F~~~y~~--T----------iG~d~~~k~i~i~~~~~v~l~iwDtaGqe~~~~~~~ 68 (215)
T cd04109 3 IVVLGDGAVGKTSLCRRFAK--EGFGKSYKQ--T----------IGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLD 68 (215)
T ss_pred EEEECCCCCCHHHHHHHHHH--CCCCCCCCC--C----------CCEEEEEEEEEECCCCEEEEEEEECCCCCCHHHHHH
T ss_conf 99999999709999999974--989887788--6----------557889999998799469999996998500237899
Q ss_pred HHHHHHCEEEEEEECCCCCCHHHH---HHHHH----HHHC-C-CC-EEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHH
Q ss_conf 998742178999976878864789---99999----9972-9-97-8999975436674025689999988862267301
Q gi|254780233|r 101 RILCMVESVVVLVDAAEGPMPQTK---FVVGK----ALKI-G-LR-PIVVVNKVDRSDARADEVINEVFDLFSALDATDA 170 (624)
Q Consensus 101 r~l~~~DgaiLvVdA~eGv~~QT~---~vl~~----A~~~-~-l~-~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de 170 (624)
.-.+-+++++||-|-+.= +|- .-|.. .... . .| ++++=||+|++..|.- -.++..+ |. .
T Consensus 69 ~y~~~a~~~ilVYDitn~---~SF~~l~~W~~~i~~~~~~~~~~~~iiLVGNK~DL~~~R~V-s~ee~~~-~A------~ 137 (215)
T cd04109 69 KYIYGAHAVFLVYDVTNS---QSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTV-KDDKHAR-FA------Q 137 (215)
T ss_pred HHHHHHCCEEEECCCCCH---HHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHCCC-CHHHHHH-HH------H
T ss_conf 999751513774147867---89998999999999985045778529999754542864776-9999999-99------9
Q ss_pred HCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf 10426688788659164674223348641355532102454
Q gi|254780233|r 171 QLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPP 211 (624)
Q Consensus 171 ~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~ 211 (624)
...++.+.+||++| .+++.+|..++..+-.
T Consensus 138 ~~g~~f~E~SAktg-----------~nV~e~F~~la~~i~~ 167 (215)
T cd04109 138 ANGMESCLVSAKTG-----------DRVNLLFQQLAAELLG 167 (215)
T ss_pred HCCCEEEEEECCCC-----------CCHHHHHHHHHHHHHC
T ss_conf 82998999838999-----------4989999999999976
No 231
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.80 E-value=1.6e-07 Score=68.64 Aligned_cols=155 Identities=15% Similarity=0.201 Sum_probs=93.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEE---EEEEEEEEECCEEEEEECCCCCCCCH
Q ss_conf 149998546898778899999983961423220000038857798709606---46799999899799997289875407
Q gi|254780233|r 20 RNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITI---LAKVTSIVWNDVRINIVDTPGHADFG 96 (624)
Q Consensus 20 RNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI---~a~~~~~~~~~~~iNiiDTPGH~DF~ 96 (624)
|-|+++|-..-|||+|+-++.. |.|...-. -|| ..+...+.=+.++++|.||.|+..|.
T Consensus 1 ~KivlvGd~~VGKTsli~r~~~--~~F~~~y~----------------~Ti~~~~~~~~~v~~~~v~l~iwDTaGqe~~~ 62 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTR--GYFPQVYE----------------PTVFENYVHDIFVDGLHIELSLWDTAGQEEFD 62 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHHC--CCCCCCCC----------------CCEEEEEEEEEEECCEEEEEEEEECCCCCCCC
T ss_conf 9899999799769999999970--99999868----------------83789999999999999999998477850000
Q ss_pred HHHHHHHHHHCEEEEEEECCCCCCH-HHHHHHHHHHH---CCCCEEEEEECCCCCCCCHHHHH-----------HHHHHH
Q ss_conf 9999998742178999976878864-78999999997---29978999975436674025689-----------999988
Q gi|254780233|r 97 GEVERILCMVESVVVLVDAAEGPMP-QTKFVVGKALK---IGLRPIVVVNKVDRSDARADEVI-----------NEVFDL 161 (624)
Q Consensus 97 gEVer~l~~~DgaiLvVdA~eGv~~-QT~~vl~~A~~---~~l~~IvvINKiDr~~a~~~~v~-----------~ei~dl 161 (624)
.-.....+-+|+++||-|-..=--= .....|..-.. -++|+|++-||+|..+.+-.+.. +|-.++
T Consensus 63 ~i~~~~y~~a~~~ilvydi~~~~Sf~~v~~~w~~~i~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~~is~~eg~~~ 142 (189)
T cd04134 63 RLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAV 142 (189)
T ss_pred HHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHCCCCHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 35567643786459999789878999999999999997497997899998800465323567776630466589999999
Q ss_pred HHHCCCCHHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 862267301104266887886591646742233486413555321024
Q gi|254780233|r 162 FSALDATDAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 162 f~~l~a~de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
-.++++ .+.+.+||++| .|++.+|+.+.+.+
T Consensus 143 Ak~~~~------~~y~EtSAkt~-----------~nV~e~F~~lar~~ 173 (189)
T cd04134 143 AKRINA------LRYLECSAKLN-----------RGVNEAFTEAARVA 173 (189)
T ss_pred HHHHCC------CEEEEECCCCC-----------CCHHHHHHHHHHHH
T ss_conf 998299------78999680679-----------49899999999999
No 232
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=98.80 E-value=5.5e-09 Score=78.20 Aligned_cols=86 Identities=20% Similarity=0.310 Sum_probs=71.4
Q ss_pred CCCHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCC--
Q ss_conf 320000011110136777349999960780515988999605785012114553011036653444112545543222--
Q gi|254780233|r 215 SEGEFKMIGTILEKDPFLGRIVTGRIHSGTIKSNQNIKALSPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSIA-- 292 (624)
Q Consensus 215 ~e~pl~~~V~~i~~d~y~Gria~gRV~sGtlk~Gd~V~vl~~~g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIvaIa-- 292 (624)
.|+||+|.|..+...+..|.+.+|||.+|+|+.||+|.++. .+. ..+|..|..+. .++++|.|||.|++.
T Consensus 1 ~dkPlRmpId~vf~i~G~GtVvtG~v~~G~i~~gd~v~i~P-~~~---~~~VksI~~~~----~~~~~a~aGd~v~l~L~ 72 (91)
T cd03693 1 TDKPLRLPIQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAP-AGV---TGEVKSVEMHH----EPLEEALPGDNVGFNVK 72 (91)
T ss_pred CCCCEEEEEEEEEECCCCEEEEEEEEEECEEECCCEEEECC-CCC---EEEEEEEEECC----CCCCEECCCCEEEEEEC
T ss_conf 99875889988997299569999998117785799977278-643---37999999988----49588889989999987
Q ss_pred CCC--CCCCCCEECCCCC
Q ss_conf 233--2101221105565
Q gi|254780233|r 293 GLV--KATVADTFCDPSI 308 (624)
Q Consensus 293 Gl~--~~~iGDTL~~~~~ 308 (624)
|++ ++.-|+.||++++
T Consensus 73 gi~~~~i~rG~Vl~~~~n 90 (91)
T cd03693 73 NVSKKDIKRGDVAGDSKN 90 (91)
T ss_pred CCCHHHCCCCCEEECCCC
T ss_conf 998999267689955689
No 233
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=98.80 E-value=2.5e-07 Score=67.35 Aligned_cols=147 Identities=16% Similarity=0.115 Sum_probs=90.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEE---EEEEEEEEECCEEEEEECCCCCCCCHH
Q ss_conf 49998546898778899999983961423220000038857798709606---467999998997999972898754079
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITI---LAKVTSIVWNDVRINIVDTPGHADFGG 97 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI---~a~~~~~~~~~~~iNiiDTPGH~DF~g 97 (624)
.|+++|..+-|||+|+-+.+. +.|...- --|| .++...+.-+.+.+.|.||+|+.+|..
T Consensus 3 Kvv~lGd~~VGKTsli~r~~~--~~f~~~y----------------~pti~~~~~~~~~~~~~~v~l~iwDTaG~e~~~~ 64 (175)
T cd01874 3 KCVVVGDGAVGKTCLLISYTT--NKFPSEY----------------VPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDR 64 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHH--CCCCCCC----------------CCCEEEEEEEEEEECCEEEEEEEEECCCCCCCHH
T ss_conf 999989999588999999964--9899986----------------7863478999999999999999998999745124
Q ss_pred HHHHHHHHHCEEEEEEECCCCCCHHHH----HHHHHHHH---CCCCEEEEEECCCCCCCCHHHHHH-------------H
Q ss_conf 999998742178999976878864789----99999997---299789999754366740256899-------------9
Q gi|254780233|r 98 EVERILCMVESVVVLVDAAEGPMPQTK----FVVGKALK---IGLRPIVVVNKVDRSDARADEVIN-------------E 157 (624)
Q Consensus 98 EVer~l~~~DgaiLvVdA~eGv~~QT~----~vl~~A~~---~~l~~IvvINKiDr~~a~~~~v~~-------------e 157 (624)
-..-..+-+|+++||-|-.+ +++- ..|-+-.. .+.|.|++-||+|..+.+. +.+ +
T Consensus 65 l~~~~~~~~~~~ilvydv~d---~~Sf~~i~~~w~~~i~~~~~~~p~iLVGnK~DL~~~~~--~~~~~~~~~~r~V~~~e 139 (175)
T cd01874 65 LRPLSYPQTDVFLVCFSVVS---PSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS--TIEKLAKNKQKPITPET 139 (175)
T ss_pred HHHHHHHCCCEEEEEEECCC---HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHH--HHHHHHHCCCCCCCHHH
T ss_conf 65887713888899963798---78899999999999998298998899998720335666--67776440265668999
Q ss_pred HHHHHHHCCCCHHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHC
Q ss_conf 99888622673011042668878865916467422334864135553210
Q gi|254780233|r 158 VFDLFSALDATDAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVD 207 (624)
Q Consensus 158 i~dlf~~l~a~de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~ 207 (624)
-..+-.++++ .+.+.+||++| .|+..+|+.++.
T Consensus 140 g~~lA~~~~~------~~y~EtSAk~g-----------~nV~e~F~~~i~ 172 (175)
T cd01874 140 GEKLARDLKA------VKYVECSALTQ-----------KGLKNVFDEAIL 172 (175)
T ss_pred HHHHHHHCCC------CEEEECCCCCC-----------CCHHHHHHHHHH
T ss_conf 9999997599------59999133789-----------597999999999
No 234
>TIGR02528 EutP ethanolamine utilization protein, EutP; InterPro: IPR012381 Members of this family function in ethanolamine and propanediol degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose , . More than 10f the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect , . The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella , , . Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 biogenic amine metabolic process.
Probab=98.79 E-value=1.5e-08 Score=75.41 Aligned_cols=133 Identities=23% Similarity=0.331 Sum_probs=77.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEE-EEEEEECCEEEEEECCCC----CCCC
Q ss_conf 49998546898778899999983961423220000038857798709606467-999998997999972898----7540
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAK-VTSIVWNDVRINIVDTPG----HADF 95 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~-~~~~~~~~~~iNiiDTPG----H~DF 95 (624)
-|.+||.+++|||||+.+| + |--|+.| .=+++|++... ||||| |.-+
T Consensus 2 r~~f~G~~gCGKTTL~q~L--------~------------------g~~~~YKKTQAvE~~~k~~--IDTPGEY~enr~~ 53 (144)
T TIGR02528 2 RIMFIGSVGCGKTTLTQAL--------Q------------------GEEIKYKKTQAVEYKDKEA--IDTPGEYVENRRY 53 (144)
T ss_pred EEEEEECCCCCHHHHHHHC--------C------------------CCCCCEEEEEEEEECCCCC--CCCCCCCCCCCCH
T ss_conf 1788715888744354311--------6------------------8732102334454258886--5598500157523
Q ss_pred HHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHC-CCCEEEEEECCCCCCCCH--HHHHHHHHHHHHHCCCCHHHC
Q ss_conf 79999998742178999976878864789999999972-997899997543667402--568999998886226730110
Q gi|254780233|r 96 GGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKI-GLRPIVVVNKVDRSDARA--DEVINEVFDLFSALDATDAQL 172 (624)
Q Consensus 96 ~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~-~l~~IvvINKiDr~~a~~--~~v~~ei~dlf~~l~a~de~l 172 (624)
..----...=||-.+||-+|.++-. .|-=..+--. ..|.|=+|.|+|.++++- +.+... +..-|+.
T Consensus 54 Y~AL~vtaaDAd~i~lV~~a~~~~~---~f~PgF~~~f~kK~~IG~vTK~DLA~~d~~i~r~~~~----L~~AG~~---- 122 (144)
T TIGR02528 54 YSALIVTAADADVIALVQSATDEES---RFSPGFASIFVKKEVIGIVTKIDLAEADKDIERAKRL----LETAGAE---- 122 (144)
T ss_pred HHHHHHHHHCCEEEEEEECCCCCCC---CCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHH----HHHCCCC----
T ss_conf 7888888721023667735776422---3785000236788634788403788773479999999----8723654----
Q ss_pred CHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHH
Q ss_conf 426688788659164674223348641355532
Q gi|254780233|r 173 DFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLI 205 (624)
Q Consensus 173 d~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~I 205 (624)
+++..|+. .+.|++.|++-+
T Consensus 123 --~iF~~~~~-----------d~~G~~~l~~yL 142 (144)
T TIGR02528 123 --KIFEISSV-----------DEKGIEELVDYL 142 (144)
T ss_pred --CCEEECCC-----------CCHHHHHHHHHH
T ss_conf --33165077-----------804589999984
No 235
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.78 E-value=6.6e-08 Score=71.11 Aligned_cols=155 Identities=18% Similarity=0.243 Sum_probs=95.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEE-ECCEEEEEECCCCCCCCHHHH
Q ss_conf 4999854689877889999998396142322000003885779870960646799999-899799997289875407999
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIV-WNDVRINIVDTPGHADFGGEV 99 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~-~~~~~iNiiDTPGH~DF~gEV 99 (624)
-|.++|-.+-|||+|+-+++. |.|...-.. + =|+...++...+. ....+++|.||+|...|..-.
T Consensus 4 KivllGd~~VGKTsL~~rf~~--~~F~~~~~~--T----------ig~df~~k~i~i~dg~~v~l~IwDTaGqe~~~si~ 69 (211)
T cd04111 4 RLIVIGDSTVGKSSLLKRFTE--GRFAEVSDP--T----------VGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSIT 69 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHH--CCCCCCCCC--C----------CCEEEEEEEEEECCCCEEEEEEEECCCCCCCCCCH
T ss_conf 999999999619999999981--999998687--2----------01688998999779959999999798863456442
Q ss_pred HHHHHHHCEEEEEEECCCCCCHHHHHHHHH-HHH----CCCCEEEEEECCCCCCCCHHHHH-HHHHHHHHHCCCCHHHCC
Q ss_conf 999874217899997687886478999999-997----29978999975436674025689-999988862267301104
Q gi|254780233|r 100 ERILCMVESVVVLVDAAEGPMPQTKFVVGK-ALK----IGLRPIVVVNKVDRSDARADEVI-NEVFDLFSALDATDAQLD 173 (624)
Q Consensus 100 er~l~~~DgaiLvVdA~eGv~~QT~~vl~~-A~~----~~l~~IvvINKiDr~~a~~~~v~-~ei~dlf~~l~a~de~ld 173 (624)
..-.+-++|+|||-|.+.=---+--.-|.+ +.+ ..++.|++=||.|..+.| +|. +|...+- .+..
T Consensus 70 ~~yyr~a~g~ilVyDvt~~~SF~~l~~W~~ei~~~~~~~~~~iiLVGNK~DL~~~R--~Vs~ee~~~~A-------~~~~ 140 (211)
T cd04111 70 RSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQR--QVTREEAEKLA-------KDLG 140 (211)
T ss_pred HHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHC--CCCHHHHHHHH-------HHHC
T ss_conf 87742124468971477779999999999999997498885389887423128567--88999999999-------9839
Q ss_pred HHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 266887886591646742233486413555321024
Q gi|254780233|r 174 FPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 174 ~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
++.+.+||++| .+++.+|+.|...+
T Consensus 141 ~~f~EtSAK~g-----------~nV~e~F~~la~~i 165 (211)
T cd04111 141 MKYIETSARTG-----------DNVEEAFELLTQEI 165 (211)
T ss_pred CEEEEECCCCC-----------CCHHHHHHHHHHHH
T ss_conf 97999759998-----------19899999999999
No 236
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.78 E-value=1.6e-07 Score=68.60 Aligned_cols=157 Identities=12% Similarity=0.077 Sum_probs=97.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCH
Q ss_conf 24314999854689877889999998396142322000003885779870960646799999899799997289875407
Q gi|254780233|r 17 MQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFG 96 (624)
Q Consensus 17 ~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~ 96 (624)
.++-++.|+|..+.|||+|+-+++. +.+...... ---|.....+.+.+.=+..++.|.||+|+..|.
T Consensus 2 r~vfk~~VlG~~~VGKTsLi~rf~~--~~f~~~~y~-----------~Ti~~~~~~k~v~v~g~~~~L~i~Dt~g~e~~~ 68 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLG--RSFSLNAYS-----------PTIKPRYAVNTVEVYGQEKYLILREVGEDEVAI 68 (169)
T ss_pred CEEEEEEEECCCCCCHHHHHHHHHC--CCCCCCCCC-----------CCCCCEEEEEEEEECCEEEEEEEEECCCCHHHH
T ss_conf 5089999999999889999999964--999866656-----------754661899999989999999998556532355
Q ss_pred HHHHHHHHHHCEEEEEEECCCCCCHHHH----HHHHHHH-HCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 9999998742178999976878864789----9999999-7299789999754366740256899999888622673011
Q gi|254780233|r 97 GEVERILCMVESVVVLVDAAEGPMPQTK----FVVGKAL-KIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQ 171 (624)
Q Consensus 97 gEVer~l~~~DgaiLvVdA~eGv~~QT~----~vl~~A~-~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ 171 (624)
.-...-++-+|+++||-|.++= ++= .++++.. ...+|.+++-||.|++..|-- ...|..++-. +
T Consensus 69 ~l~~~~~~~ad~~ilVyDit~~---~SF~~i~~~~~~~~~~~~iP~vlVgNK~DL~~~rqV-~~~e~~~~a~-------~ 137 (169)
T cd01892 69 LLNDAELAACDVACLVYDSSDP---KSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQR-YEVQPDEFCR-------K 137 (169)
T ss_pred HHHHHHHCCCCEEEEEEECCCH---HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCC-CHHHHHHHHH-------H
T ss_conf 6658875469889999979987---899999999997005689818999886554203754-6776999999-------8
Q ss_pred CCHHH-HHHHHHCCEECCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 04266-88788659164674223348641355532102
Q gi|254780233|r 172 LDFPI-LYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDH 208 (624)
Q Consensus 172 ld~Pv-~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~ 208 (624)
..++. +.+||++| .++..+|..|.+-
T Consensus 138 ~~~~~~~e~SAktg-----------~nv~~~F~~la~~ 164 (169)
T cd01892 138 LGLPPPLHFSSKLG-----------DSSNELFTKLATA 164 (169)
T ss_pred CCCCCCEEEEEECC-----------CCHHHHHHHHHHH
T ss_conf 39996669983279-----------8989999999999
No 237
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.77 E-value=3.6e-07 Score=66.27 Aligned_cols=113 Identities=25% Similarity=0.362 Sum_probs=76.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCH-
Q ss_conf 4314999854689877889999998396142322000003885779870960646799999899799997289875407-
Q gi|254780233|r 18 QIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFG- 96 (624)
Q Consensus 18 ~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~- 96 (624)
+.+.|.|.|+-.-|||||+-++ |++-.+-..-. + --+||.| -+|+++..++-+|||||--|=-
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~l---T~AkpEvA~YP--F-------TTK~i~v----Ghfe~~~~R~QvIDTPGlLDRPl 230 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKL---TTAKPEVAPYP--F-------TTKGIHV----GHFERGYLRIQVIDTPGLLDRPL 230 (346)
T ss_pred CCCEEEEECCCCCCHHHHHHHH---HCCCCCCCCCC--C-------CCCCEEE----EEEECCCCEEEEECCCCCCCCCH
T ss_conf 9973898569987589999887---54897667888--5-------3365467----65504870589842886457885
Q ss_pred ---HHHHH----HHHH-HCEEEEEEECCC----CCCHHHHHHHHHH-HHCCCCEEEEEECCCCC
Q ss_conf ---99999----9874-217899997687----8864789999999-97299789999754366
Q gi|254780233|r 97 ---GEVER----ILCM-VESVVVLVDAAE----GPMPQTKFVVGKA-LKIGLRPIVVVNKVDRS 147 (624)
Q Consensus 97 ---gEVer----~l~~-~DgaiLvVdA~e----Gv~~QT~~vl~~A-~~~~l~~IvvINKiDr~ 147 (624)
-++|+ +|+- .+.+|.++|+++ .++.|-. .|..- ...+.|.++|+||+|..
T Consensus 231 ~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~-L~~eIk~~f~~p~v~V~nK~D~~ 293 (346)
T COG1084 231 EERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQIS-LLEEIKELFKAPIVVVINKIDIA 293 (346)
T ss_pred HHHCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHH-HHHHHHHHCCCCEEEEEECCCCC
T ss_conf 7736899999999997428589997685002899999999-99999985388769997410124
No 238
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=98.76 E-value=3e-07 Score=66.77 Aligned_cols=158 Identities=15% Similarity=0.120 Sum_probs=92.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHH
Q ss_conf 49998546898778899999983961423220000038857798709606467999998997999972898754079999
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVE 100 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVe 100 (624)
.|.++|..+-|||+|+-+++. |.|...-. .++-| ...+.+.+.-+.++++|.||.|+..|..-..
T Consensus 5 KivlvGd~~VGKTsli~r~~~--~~F~~~y~--pti~~-----------~~~~~~~i~~~~v~l~iwDtaG~e~~~~~~~ 69 (191)
T cd01875 5 KCVVVGDGAVGKTCLLICYTT--NAFPKEYI--PTVFD-----------NYSAQTAVDGRTVSLNLWDTAGQEEYDRLRT 69 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHH--CCCCCCCC--CCCCE-----------EEEEEEEECCEEEEEEEEECCCCCCHHHHHH
T ss_conf 999999999899999999972--99998646--62100-----------0467899999999999985888700356778
Q ss_pred HHHHHHCEEEEEEECCCCCCHHHH----HHHHHHHH---CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCH----
Q ss_conf 998742178999976878864789----99999997---2997899997543667402568999998886226730----
Q gi|254780233|r 101 RILCMVESVVVLVDAAEGPMPQTK----FVVGKALK---IGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATD---- 169 (624)
Q Consensus 101 r~l~~~DgaiLvVdA~eGv~~QT~----~vl~~A~~---~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~d---- 169 (624)
...+-+|++||+-|-.+= +|- .-|..-.. .++|+|++-||.|+.+.+ ....++.+--..--..+
T Consensus 70 ~~~~~a~~~ilvfdvt~~---~Sf~~v~~~w~~ei~~~~~~~piiLvGnK~DL~~~~--~~~~~~~e~~~~~vs~eeg~~ 144 (191)
T cd01875 70 LSYPQTNVFIICFSIASP---SSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDA--DTLKKLKEQGQAPITPQQGGA 144 (191)
T ss_pred HHHCCCCEEEEEEECCCH---HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCH--HHHHHHHHHHCCCCCHHHHHH
T ss_conf 774478689999857977---889999999999999709699789998880102345--778887764137556999999
Q ss_pred --HHCC-HHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf --1104-266887886591646742233486413555321024
Q gi|254780233|r 170 --AQLD-FPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 170 --e~ld-~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
.++. .+.+.+||++| .|+..+|+.+++.+
T Consensus 145 ~a~~~~~~~y~EtSAkt~-----------~nV~e~F~~l~k~i 176 (191)
T cd01875 145 LAKQIHAVKYLECSALNQ-----------DGVKEVFAEAVRAV 176 (191)
T ss_pred HHHHHCCCEEEECCCCCC-----------CCHHHHHHHHHHHH
T ss_conf 999809988999068989-----------69899999999998
No 239
>KOG1423 consensus
Probab=98.73 E-value=4.8e-07 Score=65.45 Aligned_cols=166 Identities=22% Similarity=0.357 Sum_probs=96.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCC--
Q ss_conf 243149998546898778899999983961423220000038857798709606467999998997999972898754--
Q gi|254780233|r 17 MQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHAD-- 94 (624)
Q Consensus 17 ~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~D-- 94 (624)
.++-+||+||--..||+||+..|+.+- +..-..+++ +. |- .|++ .+.-+++++-|.||||-.-
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~k-v~~vS~K~~-----TT---r~---~ilg---i~ts~eTQlvf~DTPGlvs~~ 134 (379)
T KOG1423 70 QKSLYVAVIGAPNVGKSTLTNQMIGQK-VSAVSRKVH-----TT---RH---RILG---IITSGETQLVFYDTPGLVSKK 134 (379)
T ss_pred CEEEEEEEECCCCCCHHHHHHHHHCCC-CCCCCCCCC-----CE---EE---EEEE---EEECCCEEEEEECCCCCCCCC
T ss_conf 157899997089765455445764872-120115665-----30---20---1357---871596589996487645334
Q ss_pred ----------CHHHHHHHHHHHCEEEEEEECCCCCCHHH-HHHHHHHHH-CCCCEEEEEECCCCCCCCHHHHHHH-----
Q ss_conf ----------07999999874217899997687886478-999999997-2997899997543667402568999-----
Q gi|254780233|r 95 ----------FGGEVERILCMVESVVVLVDAAEGPMPQT-KFVVGKALK-IGLRPIVVVNKVDRSDARADEVINE----- 157 (624)
Q Consensus 95 ----------F~gEVer~l~~~DgaiLvVdA~eGv~~QT-~~vl~~A~~-~~l~~IvvINKiDr~~a~~~~v~~e----- 157 (624)
|--...+++.-+|.+++|+||.. +..++ -+||+...+ .++|-|.+.||+|..... .++-.
T Consensus 135 ~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~-tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k--~~Ll~l~~~L 211 (379)
T KOG1423 135 MHRRHHLMMSVLQNPRDAAQNADCVVVVVDASA-TRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQK--RLLLNLKDLL 211 (379)
T ss_pred HHHHHHHHHHHHHCHHHHHHHCCEEEEEEECCC-CCCCCCHHHHHHHHHHHCCCCEEECCCHHCCHHH--HHHHHHHHHC
T ss_conf 135678888765378988863887999985567-7675680787778998618720330400022146--6776667760
Q ss_pred -----------HHHHHHHCCCCHH---HCC---H-HHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf -----------9988862267301---104---2-6688788659164674223348641355532102454
Q gi|254780233|r 158 -----------VFDLFSALDATDA---QLD---F-PILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPP 211 (624)
Q Consensus 158 -----------i~dlf~~l~a~de---~ld---~-Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~ 211 (624)
+++-|.+...++- ... | -|++.||+.| .|+..|-+-++...|+
T Consensus 212 t~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G-----------~GikdlkqyLmsqa~~ 272 (379)
T KOG1423 212 TNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYG-----------EGIKDLKQYLMSQAPP 272 (379)
T ss_pred CCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCC-----------CCHHHHHHHHHHCCCC
T ss_conf 555100345658887355974335643247645314899840466-----------6789999999723799
No 240
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=98.69 E-value=2.8e-08 Score=73.55 Aligned_cols=81 Identities=33% Similarity=0.463 Sum_probs=68.4
Q ss_pred HHCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCC--
Q ss_conf 000111101367773499999607805159889996057850121145530110366534441125455432222332--
Q gi|254780233|r 219 FKMIGTILEKDPFLGRIVTGRIHSGTIKSNQNIKALSPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSIAGLVK-- 296 (624)
Q Consensus 219 l~~~V~~i~~d~y~Gria~gRV~sGtlk~Gd~V~vl~~~g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIvaIaGl~~-- 296 (624)
++++|+++..+++.|+++++||++|++++|+.+.+..... ....+|.+|+.+. .+++++.||+++++.....
T Consensus 1 ~~~~v~~~~~~~~~g~v~~~rv~~G~l~~g~~v~~~~~~~--~~~~~v~~i~~~~----~~~~~~~aG~~~~~~~~~~~~ 74 (83)
T cd01342 1 LRALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVGPGGG--GVKGKVKSLKRFK----GEVDEAVAGDIVGIVLKDKDD 74 (83)
T ss_pred CEEEEEEEEEECCCEEEEEEEECCCEEECCCEEEEECCCC--CEEEEEEEEEEEC----CCCCEECCCCEEEEEECCHHH
T ss_conf 9129999999189689999999342998999999970996--3899998999922----377798489899999716353
Q ss_pred CCCCCEECC
Q ss_conf 101221105
Q gi|254780233|r 297 ATVADTFCD 305 (624)
Q Consensus 297 ~~iGDTL~~ 305 (624)
+.+||++++
T Consensus 75 ~~~gd~~~~ 83 (83)
T cd01342 75 IKIGDTLTD 83 (83)
T ss_pred CCCCCEECC
T ss_conf 479989829
No 241
>PRK12298 obgE GTPase ObgE; Reviewed
Probab=98.68 E-value=3.7e-07 Score=66.23 Aligned_cols=153 Identities=22% Similarity=0.334 Sum_probs=95.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCE-EEEEEEEEEECC-EEEEEECCCCCC---
Q ss_conf 314999854689877889999998396142322000003885779870960-646799999899-799997289875---
Q gi|254780233|r 19 IRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGIT-ILAKVTSIVWND-VRINIVDTPGHA--- 93 (624)
Q Consensus 19 IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGIT-I~a~~~~~~~~~-~~iNiiDTPGH~--- 93 (624)
|-.|++||---+|||||.-++ |.+-.+ +. ||- .| +.-..--+.+.+ ..|.+.|.||-.
T Consensus 159 iADVGLvG~PNAGKSTll~~i---S~AkPK---IA----dYp-------FTTL~PnLGvV~~~~~~~fviADIPGLIeGA 221 (380)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAV---SAAKPK---VA----DYP-------FTTLVPNLGVVRVDDERSFVIADIPGLIEGA 221 (380)
T ss_pred ECCCCEEECCCCCCHHHHHHH---HCCCCC---CC----CCC-------CCCCCCEEEEEEECCCCEEEEEECCCCCCCC
T ss_conf 516514636988610899885---558975---47----887-------5336874679994698669998777555775
Q ss_pred --------CCHHHHHHHHHHHCEEEEEEECC--CCCCHHH--HHHHHHH-----HHCCCCEEEEEECCCCCCCCHHHHHH
Q ss_conf --------40799999987421789999768--7886478--9999999-----97299789999754366740256899
Q gi|254780233|r 94 --------DFGGEVERILCMVESVVVLVDAA--EGPMPQT--KFVVGKA-----LKIGLRPIVVVNKVDRSDARADEVIN 156 (624)
Q Consensus 94 --------DF~gEVer~l~~~DgaiLvVdA~--eGv~~QT--~~vl~~A-----~~~~l~~IvvINKiDr~~a~~~~v~~ 156 (624)
.|--.+|| +..-|.|||+. ++--|.- +.+.... .-...|.|+++||||.+++ ++..+
T Consensus 222 s~G~GLG~~FLrHieR----t~~LlhviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~kp~iiv~NK~Dl~~~--~e~~~ 295 (380)
T PRK12298 222 AEGAGLGIRFLKHLER----CRVLLHLIDIAPIDGSDPVENARIIVNELEKYSPKLAEKPRWLVFNKIDLLDE--EEAEE 295 (380)
T ss_pred CCCCCHHHHHHHHHHH----HCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCHHHCCCCEEEEEECCCCCCH--HHHHH
T ss_conf 5587728999999875----35899999688777519999999999999985976605987999988548997--99999
Q ss_pred HHHHHHHHCCCCHHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 999888622673011042668878865916467422334864135553210245
Q gi|254780233|r 157 EVFDLFSALDATDAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVP 210 (624)
Q Consensus 157 ei~dlf~~l~a~de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP 210 (624)
.+.++..+++.+ -||++.||.+| +|+.+|+.+|.+++.
T Consensus 296 ~~~~~~~~~~~~-----~~v~~ISA~tg-----------eG~~~L~~~i~~~l~ 333 (380)
T PRK12298 296 RAKEIVEALGWE-----GPVYLISAASG-----------EGTKELCWDLMTFIE 333 (380)
T ss_pred HHHHHHHHCCCC-----CCEEEEECCCC-----------CCHHHHHHHHHHHHH
T ss_conf 999999970888-----88799978768-----------799999999999998
No 242
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.67 E-value=3.3e-07 Score=66.53 Aligned_cols=156 Identities=21% Similarity=0.369 Sum_probs=95.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCH----
Q ss_conf 4999854689877889999998396142322000003885779870960646799999899799997289875407----
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFG---- 96 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~---- 96 (624)
||-|+|--++|||+|..+|+. |....-..+ -.++.+.-+.| ..|++..++|.||||.-|=.
T Consensus 41 nvLi~G~TG~GKSSliNALF~--~~~~~v~~v---g~~t~~~~~~~----------~~~~~~~l~lwDtPG~gdg~~~D~ 105 (296)
T COG3596 41 NVLLMGATGAGKSSLINALFQ--GEVKEVSKV---GVGTDITTRLR----------LSYDGENLVLWDTPGLGDGKDKDA 105 (296)
T ss_pred EEEEECCCCCCHHHHHHHHHH--CCCCEEEEC---CCCCCCHHHHH----------HHCCCCCEEEECCCCCCCCHHHHH
T ss_conf 589743777768899999970--267342104---66887015677----------412665248843788553202218
Q ss_pred ---HHHHHHHHHHCEEEEEEECCCCCCHHH-HHHHHHHH--HCCCCEEEEEECCCCCCC----C-----H--------HH
Q ss_conf ---999999874217899997687886478-99999999--729978999975436674----0-----2--------56
Q gi|254780233|r 97 ---GEVERILCMVESVVVLVDAAEGPMPQT-KFVVGKAL--KIGLRPIVVVNKVDRSDA----R-----A--------DE 153 (624)
Q Consensus 97 ---gEVer~l~~~DgaiLvVdA~eGv~~QT-~~vl~~A~--~~~l~~IvvINKiDr~~a----~-----~--------~~ 153 (624)
--+.-.|+-.|-++++++|.+--. || ..-|+.-. ..+.+.|++||..||..- + + ++
T Consensus 106 ~~r~~~~d~l~~~DLvL~l~~~~draL-~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~ 184 (296)
T COG3596 106 EHRQLYRDYLPKLDLVLWLIKADDRAL-GTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEE 184 (296)
T ss_pred HHHHHHHHHHHHCCEEEEECCCCCCCC-CCCHHHHHHHHHHCCCCEEEEEEEHHHHHCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 999999988632247999614777001-4779999999986057606999736654365543000259998789999999
Q ss_pred HHHHHHHHHHHCCCCHHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf 8999998886226730110426688788659164674223348641355532102454
Q gi|254780233|r 154 VINEVFDLFSALDATDAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPP 211 (624)
Q Consensus 154 v~~ei~dlf~~l~a~de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~ 211 (624)
=.+.+.++|-+ --||+++|++.+ .|+..|+.+++..+|.
T Consensus 185 k~~~~~~~~q~--------V~pV~~~~~r~~-----------wgl~~l~~ali~~lp~ 223 (296)
T COG3596 185 KAEALGRLFQE--------VKPVVAVSGRLP-----------WGLKELVRALITALPV 223 (296)
T ss_pred HHHHHHHHHHH--------CCCEEEECCCCC-----------CCHHHHHHHHHHHCCC
T ss_conf 99999998763--------177477525467-----------6689999999986731
No 243
>PRK11058 putative GTPase HflX; Provisional
Probab=98.66 E-value=7e-07 Score=64.39 Aligned_cols=155 Identities=16% Similarity=0.263 Sum_probs=92.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEEC-CEEEEEECCCCCCC-
Q ss_conf 2431499985468987788999999839614232200000388577987096064679999989-97999972898754-
Q gi|254780233|r 17 MQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWN-DVRINIVDTPGHAD- 94 (624)
Q Consensus 17 ~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~-~~~iNiiDTPGH~D- 94 (624)
..+-.||++|--.+|||||..+|- .++++ ++|+..- |.-.+.-.+.+. +.++-+.||.|+.+
T Consensus 195 ~~~~~ValVGYTNAGKSTL~n~Lt-~~~v~-----~~d~LFA----------TLD~t~R~~~l~~~~~~lltDTVGFI~~ 258 (426)
T PRK11058 195 ADVPTVSLVGYTNAGKSTLFNRIT-EARVY-----AADQLFA----------TLDPTLRRIDVADVGETVLADTVGFIRH 258 (426)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH-CCCCC-----CCCCCCC----------CCCCCEEEEECCCCCEEEEECCCHHHHH
T ss_conf 699769997357777899987775-28876-----3254501----------4786202678699986999715066651
Q ss_pred --------CHHHHHHHHHHHCEEEEEEECCCC-CCHHHH---HHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf --------079999998742178999976878-864789---99999997299789999754366740256899999888
Q gi|254780233|r 95 --------FGGEVERILCMVESVVVLVDAAEG-PMPQTK---FVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLF 162 (624)
Q Consensus 95 --------F~gEVer~l~~~DgaiLvVdA~eG-v~~QT~---~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf 162 (624)
|-.-.|- ..-+|-.|.||||++= ...|-. .+|..--..+.|.|+|.||+|+-+.. ...+.
T Consensus 259 LP~~LveAF~sTLeE-v~~ADlLLhVvD~S~p~~~~q~~~v~~vL~elg~~~~p~i~V~NKiD~~~~~----~~~~~--- 330 (426)
T PRK11058 259 LPHDLVAAFKATLQE-TRQATLLLHVIDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDF----EPRID--- 330 (426)
T ss_pred CCHHHHHHHHHHHHH-HHCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCH----HHHHH---
T ss_conf 989999999999999-9639889999849993799999999999997599999779999770238964----45566---
Q ss_pred HHCCCCHHHCCHH-HHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCCC
Q ss_conf 6226730110426-6887886591646742233486413555321024542
Q gi|254780233|r 163 SALDATDAQLDFP-ILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPP 212 (624)
Q Consensus 163 ~~l~a~de~ld~P-v~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~P 212 (624)
. .+ ..+| .++.||++| .|++.|+++|.+.++..
T Consensus 331 -~---~~--~~~p~~V~iSA~tg-----------~Gi~~L~~~I~~~L~~~ 364 (426)
T PRK11058 331 -R---DE--ENKPIRVWLSAQTG-----------AGIPLLFQALTERLSGE 364 (426)
T ss_pred -H---HH--CCCCCEEEEECCCC-----------CCHHHHHHHHHHHCCCC
T ss_conf -6---53--39987799978999-----------89999999999870337
No 244
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.65 E-value=9.8e-07 Score=63.42 Aligned_cols=153 Identities=14% Similarity=0.150 Sum_probs=89.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEE-EEEEEECC--EEEEEECCCCCCCCHH
Q ss_conf 49998546898778899999983961423220000038857798709606467-99999899--7999972898754079
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAK-VTSIVWND--VRINIVDTPGHADFGG 97 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~-~~~~~~~~--~~iNiiDTPGH~DF~g 97 (624)
-|.++|...-|||+|+-++. .+.|...- --||... ...+..++ ++++|.||+|..+|..
T Consensus 3 KivlvGd~~VGKTsLi~r~~--~~~F~~~y----------------~pTi~~~~~~~~~v~~~~v~l~iwDTaGqe~~~~ 64 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFA--KDCYPETY----------------VPTVFENYTASFEIDEQRIELSLWDTSGSPYYDN 64 (178)
T ss_pred EEEEECCCCCCHHHHHHHHH--CCCCCCCC----------------CCCEEEEEEEEEEECCEEEEEEEEECCCCHHHCC
T ss_conf 99999999977899999996--39999985----------------7856888899999999999999996898742110
Q ss_pred HHHHHHHHHCEEEEEEECCCCCCHH-HHHHHHHHHH---CCCCEEEEEECCCCCCCCHHH----------H-HHHHHHHH
Q ss_conf 9999987421789999768788647-8999999997---299789999754366740256----------8-99999888
Q gi|254780233|r 98 EVERILCMVESVVVLVDAAEGPMPQ-TKFVVGKALK---IGLRPIVVVNKVDRSDARADE----------V-INEVFDLF 162 (624)
Q Consensus 98 EVer~l~~~DgaiLvVdA~eGv~~Q-T~~vl~~A~~---~~l~~IvvINKiDr~~a~~~~----------v-~~ei~dlf 162 (624)
-..-..+-+|++||+-|-..=---. ....|..-.. -+.|+|++-||.|...-+... | .+|-..+-
T Consensus 65 l~~~~y~~a~~~ilvydit~~~Sf~~v~~~W~~ei~~~~~~~~iiLVGnK~DLr~~~~~~~~~~~~~~~~Vs~eeg~~~A 144 (178)
T cd04131 65 VRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIA 144 (178)
T ss_pred HHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 36677346878999973798788999999999999986879988999985436644455667764467776899999999
Q ss_pred HHCCCCHHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHC
Q ss_conf 622673011042668878865916467422334864135553210
Q gi|254780233|r 163 SALDATDAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVD 207 (624)
Q Consensus 163 ~~l~a~de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~ 207 (624)
.++++ .+.+.+||++| +.|+..+|+.+..
T Consensus 145 ~~~ga------~~y~EtSAktg----------~ngV~evF~~a~~ 173 (178)
T cd04131 145 KQLGA------EIYLECSAFTS----------EKSVRDIFHVATM 173 (178)
T ss_pred HHCCC------CEEEECCCCCC----------CCCHHHHHHHHHH
T ss_conf 97499------89999784868----------7398999999999
No 245
>pfam08477 Miro Miro-like protein. Mitochondrial Rho proteins (Miro-1 and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis.
Probab=98.63 E-value=8.6e-07 Score=63.80 Aligned_cols=111 Identities=18% Similarity=0.211 Sum_probs=74.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHHH
Q ss_conf 99985468987788999999839614232200000388577987096064679999989979999728987540799999
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVER 101 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVer 101 (624)
|+++|--+.|||||+.+++. +.+...... ...+.++..+......+.+.+++.||+|+..|.....+
T Consensus 2 ivvvG~~~vGKTSLi~r~~~--~~f~~~~~~-----------~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~ 68 (118)
T pfam08477 2 VVVIGDKGSGKSSLLSQLVG--GEFPPEIPE-----------EIQGDTLAVDTLEVDGDTELLHIWDFGGREELKFEHII 68 (118)
T ss_pred EEEECCCCCCHHHHHHHHHH--CCCCCCCCC-----------CCCCCEEEEEEEEECCCEEEEEEEECCCCHHHHHHHHH
T ss_conf 99999899789999999983--988876667-----------87777688899999992899999989996777666654
Q ss_pred HHHHHCEEEEEEECCCCCCHHH-HH--HHHH-H--HHCCCCEEEEEECCC
Q ss_conf 9874217899997687886478-99--9999-9--972997899997543
Q gi|254780233|r 102 ILCMVESVVVLVDAAEGPMPQT-KF--VVGK-A--LKIGLRPIVVVNKVD 145 (624)
Q Consensus 102 ~l~~~DgaiLvVdA~eGv~~QT-~~--vl~~-A--~~~~l~~IvvINKiD 145 (624)
.++-+|++|||.|...----+. +. .|-. . ...++|+|++-||.|
T Consensus 69 ~~~~~d~~ilvydit~~~Sf~~~~~~~~~i~~~~~~~~~~piilVGnK~D 118 (118)
T pfam08477 69 FMKTADAILLVYDLTDRESLNRVSRLIAWLPHLRKLGKKIPVILVGNKFD 118 (118)
T ss_pred HCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf 22587467899979987899999999999999982099998899996859
No 246
>PRK12296 obgE GTPase ObgE; Reviewed
Probab=98.63 E-value=6.4e-07 Score=64.65 Aligned_cols=153 Identities=24% Similarity=0.365 Sum_probs=93.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCC----
Q ss_conf 4314999854689877889999998396142322000003885779870960646799999899799997289875----
Q gi|254780233|r 18 QIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHA---- 93 (624)
Q Consensus 18 ~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~---- 93 (624)
-|-.|++||--.+|||||.-++ |.+-.+ +. ||.- -|+.-..--+.+.+..|.+.|-||-.
T Consensus 158 ~iADVGLvG~PNaGKSTLl~~i---S~Akpk---IA----~YpF------TTL~PnLGvv~~~d~~f~iADiPGLIeGAs 221 (495)
T PRK12296 158 SVADVGLVGFPSAGKSSLISAI---SAAKPK---IA----DYPF------TTLVPNLGVVSAGDHTFTVADVPGLIPGAS 221 (495)
T ss_pred EEECCCEECCCCCCHHHHHHHH---HCCCCC---CC----CCCC------CCCCCEEEEEECCCCEEEEEECCCCCCCCC
T ss_conf 8613110118999615899887---548876---57----8775------545754678970795289985664346500
Q ss_pred -------CCHHHHHHHHHHHCEEEEEEECCC---CCCHHHHH-HHHH-HHH--------------CCCCEEEEEECCCCC
Q ss_conf -------407999999874217899997687---88647899-9999-997--------------299789999754366
Q gi|254780233|r 94 -------DFGGEVERILCMVESVVVLVDAAE---GPMPQTKF-VVGK-ALK--------------IGLRPIVVVNKVDRS 147 (624)
Q Consensus 94 -------DF~gEVer~l~~~DgaiLvVdA~e---Gv~~QT~~-vl~~-A~~--------------~~l~~IvvINKiDr~ 147 (624)
+|---+|| |-.-+.|||+.. |--|-.-+ +++. ... ...|.||+.||||.+
T Consensus 222 ~g~GLG~~FLRHieR----~~vL~hviD~~~~e~~rDP~~d~~~I~~EL~~Y~~~l~~~~~~~~L~erpqIVvlNKiDlp 297 (495)
T PRK12296 222 EGRGLGLDFLRHIER----CAVLVHVVDCATLEPGRDPISDIDALEAELAAYTPTLQGDAGLGDLAERPRLVVLNKIDVP 297 (495)
T ss_pred CCCCCHHHHHHHHHH----CCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCEEEEEECCCCC
T ss_conf 389843999998752----5479999968876667896999999999999719143044332321019659999665675
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 740256899999888622673011042668878865916467422334864135553210245
Q gi|254780233|r 148 DARADEVINEVFDLFSALDATDAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVP 210 (624)
Q Consensus 148 ~a~~~~v~~ei~dlf~~l~a~de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP 210 (624)
+++ +..+.+.+.|.+ ..+||++.||.+| +|+.+|+..+.+.++
T Consensus 298 ~a~--e~~e~~~~~l~~-------~g~~Vf~ISA~t~-----------eGl~eL~~~l~elv~ 340 (495)
T PRK12296 298 DAR--ELAEFVRPELEE-------RGWPVFEVSTVTR-----------EGLRPLSFALAELVS 340 (495)
T ss_pred CHH--HHHHHHHHHHHH-------CCCCEEEEECCCC-----------CCHHHHHHHHHHHHH
T ss_conf 769--999999999987-------4995799864100-----------389999999999998
No 247
>KOG1489 consensus
Probab=98.62 E-value=4.9e-07 Score=65.37 Aligned_cols=148 Identities=24% Similarity=0.390 Sum_probs=91.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEE-EEEECCCCC----
Q ss_conf 431499985468987788999999839614232200000388577987096064679999989979-999728987----
Q gi|254780233|r 18 QIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVR-INIVDTPGH---- 92 (624)
Q Consensus 18 ~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~-iNiiDTPGH---- 92 (624)
-|-++++||--.+|||||..+| |.+-. +|.+ |- =-|+.-+.-.+.|.++. |.+-|-||-
T Consensus 195 siadvGLVG~PNAGKSTLL~al---s~AKp---kVa~----Ya------FTTL~P~iG~v~yddf~q~tVADiPGiI~GA 258 (366)
T KOG1489 195 SIADVGLVGFPNAGKSTLLNAL---SRAKP---KVAH----YA------FTTLRPHIGTVNYDDFSQITVADIPGIIEGA 258 (366)
T ss_pred EECCCCEECCCCCCHHHHHHHH---HCCCC---CCCC----CC------EEEECCCCCEEECCCCCEEEECCCCCCCCCC
T ss_conf 1055432128988678898776---40587---5455----42------0344464112513545146850476534454
Q ss_pred -------CCCHHHHHHHHHHHCEEEEEEECCCC---CCHHHHHHHHHHH---HCC---CCEEEEEECCCCCCCCHHHHHH
Q ss_conf -------54079999998742178999976878---8647899999999---729---9789999754366740256899
Q gi|254780233|r 93 -------ADFGGEVERILCMVESVVVLVDAAEG---PMPQTKFVVGKAL---KIG---LRPIVVVNKVDRSDARADEVIN 156 (624)
Q Consensus 93 -------~DF~gEVer~l~~~DgaiLvVdA~eG---v~~QT~~vl~~A~---~~~---l~~IvvINKiDr~~a~~~~v~~ 156 (624)
.+|---+|| |+..++|||...+ .--|+-..|..-+ +.+ -|.++|.||||.++|.-+. +.
T Consensus 259 h~nkGlG~~FLrHiER----~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~-l~ 333 (366)
T KOG1489 259 HMNKGLGYKFLRHIER----CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNL-LS 333 (366)
T ss_pred CCCCCCCHHHHHHHHH----HCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHH-HH
T ss_conf 3467654899998875----334899997787555887899999999999986542358538997446736678889-99
Q ss_pred HHHHHHHHCCCCHHHCCHH-HHHHHHHCCEECCCCCCCCCCCCHHHHHHHHC
Q ss_conf 9998886226730110426-68878865916467422334864135553210
Q gi|254780233|r 157 EVFDLFSALDATDAQLDFP-ILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVD 207 (624)
Q Consensus 157 ei~dlf~~l~a~de~ld~P-v~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~ 207 (624)
+ |+..|. -| |+..||+.| +++++|++.+-+
T Consensus 334 ~---L~~~lq-------~~~V~pvsA~~~-----------egl~~ll~~lr~ 364 (366)
T KOG1489 334 S---LAKRLQ-------NPHVVPVSAKSG-----------EGLEELLNGLRE 364 (366)
T ss_pred H---HHHHCC-------CCCEEEEEECCC-----------CCHHHHHHHHHH
T ss_conf 9---998737-------981787640046-----------456889987763
No 248
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=98.62 E-value=4.7e-08 Score=72.09 Aligned_cols=79 Identities=25% Similarity=0.428 Sum_probs=64.8
Q ss_pred HHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCC--CCC
Q ss_conf 000011110136777349999960780515988999605785012114553011036653444112545543222--233
Q gi|254780233|r 218 EFKMIGTILEKDPFLGRIVTGRIHSGTIKSNQNIKALSPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSIA--GLV 295 (624)
Q Consensus 218 pl~~~V~~i~~d~y~Gria~gRV~sGtlk~Gd~V~vl~~~g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIvaIa--Gl~ 295 (624)
||+|.|..+..+.. |.+.+|||.||+++.||+|.++ |.+. ..+|..|..+ ..++++|.|||.|+++ |++
T Consensus 1 P~R~pI~~v~~~~g-G~vv~G~v~sG~i~~Gd~v~i~-P~~~---~~~VksI~~~----~~~~~~A~aG~~V~l~L~gid 71 (83)
T cd03698 1 PFRLPISDKYKDQG-GTVVSGKVESGSIQKGDTLLVM-PSKE---SVEVKSIYVD----DEEVDYAVAGENVRLKLKGID 71 (83)
T ss_pred CEEEEEEEEEECCC-CCEEEEEEEECEECCCCEEEEE-CCCC---EEEEEEEEEC----CEEECEECCCCEEEEEECCCC
T ss_conf 97989974798699-7399999902587289999997-8998---8999999999----917298889997999984898
Q ss_pred --CCCCCCEECC
Q ss_conf --2101221105
Q gi|254780233|r 296 --KATVADTFCD 305 (624)
Q Consensus 296 --~~~iGDTL~~ 305 (624)
++..||.||+
T Consensus 72 ~~~i~rG~vlcs 83 (83)
T cd03698 72 EEDISPGDVLCS 83 (83)
T ss_pred HHHCCCCCEEEC
T ss_conf 999479889949
No 249
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.59 E-value=5.1e-07 Score=65.30 Aligned_cols=154 Identities=14% Similarity=0.120 Sum_probs=89.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHH
Q ss_conf 49998546898778899999983961423220000038857798709606467999998997999972898754079999
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVE 100 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVe 100 (624)
-|+++|-.+-|||+|+-++.. |.|...-. .++.|. ..+...+.-+.++++|.||+|+.+|..-..
T Consensus 3 KivllGd~~VGKTsLi~r~~~--~~f~~~y~--pTi~~~-----------~~~~i~v~~~~v~l~iwDTaG~e~~~~~~~ 67 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTL--GEFPEEYH--PTVFEN-----------YVTDCRVDGKPVQLALWDTAGQEEYERLRP 67 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHH--CCCCCCCC--CCEEEE-----------EEEEEEECCEEEEEEEEECCCCCCCCCCCC
T ss_conf 999999899768999999982--98999878--866789-----------899999999999999997888703454604
Q ss_pred HHHHHHCEEEEEEECCCCCCHHHH----HHHHHHH---HCCCCEEEEEECCCCCCCCH--------HHHH-HHHHHHHHH
Q ss_conf 998742178999976878864789----9999999---72997899997543667402--------5689-999988862
Q gi|254780233|r 101 RILCMVESVVVLVDAAEGPMPQTK----FVVGKAL---KIGLRPIVVVNKVDRSDARA--------DEVI-NEVFDLFSA 164 (624)
Q Consensus 101 r~l~~~DgaiLvVdA~eGv~~QT~----~vl~~A~---~~~l~~IvvINKiDr~~a~~--------~~v~-~ei~dlf~~ 164 (624)
...+-+|++||+-|-..= +|- .-|..-. .-+.|.|++-||.|..+... ..|. ++-..+-..
T Consensus 68 ~~~~~a~~~ilvydi~~~---~Sf~~~~~~w~~~~~~~~~~~piilVGnK~DL~~~~~~~~~~~~~r~V~~~~g~~~a~~ 144 (187)
T cd04129 68 LSYSKAHVILIGFAVDTP---DSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKE 144 (187)
T ss_pred CEECCCCEEEEECCCCCH---HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHCCCCCHHHHHHHHHH
T ss_conf 123388589997026986---67999999999999985879988999886001134112111223155789999999998
Q ss_pred CCCCHHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 267301104266887886591646742233486413555321024
Q gi|254780233|r 165 LDATDAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 165 l~a~de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
+++. +.+.+||++| .|+..+|+.++..+
T Consensus 145 ~~~~------~y~EtSAk~~-----------~nV~e~F~~~~r~~ 172 (187)
T cd04129 145 IGAK------KYMECSALTG-----------EGVDDVFEAATRAA 172 (187)
T ss_pred CCCC------EEEEECCCCC-----------CCHHHHHHHHHHHH
T ss_conf 4997------8999688999-----------79899999999999
No 250
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.54 E-value=3.8e-07 Score=66.13 Aligned_cols=115 Identities=18% Similarity=0.223 Sum_probs=73.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEE---EEEC-CEEEEEECCCCCC
Q ss_conf 43149998546898778899999983961423220000038857798709606467999---9989-9799997289875
Q gi|254780233|r 18 QIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTS---IVWN-DVRINIVDTPGHA 93 (624)
Q Consensus 18 ~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~---~~~~-~~~iNiiDTPGH~ 93 (624)
...-|+++|..++|||||+-++... .+.+ +...||.....+ ..++ ..++.++||+|+.
T Consensus 4 ~~~kivv~G~~g~GKTtl~~~l~~~--~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~ 65 (219)
T COG1100 4 KEFKIVVLGDGGVGKTTLLNRLVGD--EFPE----------------GYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQE 65 (219)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHCC--CCCC----------------CCCCCEEECCCCCEEECCCCCEEEEEEECCCHH
T ss_conf 3279999999999889999999647--6765----------------567614540432036226660026767679869
Q ss_pred CCHHHHHHHHHHHCEEEEEEECCC--CCCHHHHHHHHHHHHC----CCCEEEEEECCCCCCCCH
Q ss_conf 407999999874217899997687--8864789999999972----997899997543667402
Q gi|254780233|r 94 DFGGEVERILCMVESVVVLVDAAE--GPMPQTKFVVGKALKI----GLRPIVVVNKVDRSDARA 151 (624)
Q Consensus 94 DF~gEVer~l~~~DgaiLvVdA~e--Gv~~QT~~vl~~A~~~----~l~~IvvINKiDr~~a~~ 151 (624)
+|..=...-...++++++++|... ....-+ ..|...+.. +.|.+++-||+|....+.
T Consensus 66 ~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~-~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~ 128 (219)
T COG1100 66 EYRSLRPEYYRGANGILIVYDSTLRESSDELT-EEWLEELRELAPDDVPILLVGNKIDLFDEQS 128 (219)
T ss_pred HHHHHHHHCCCCCCEEEEEEECCCHHHHHHHH-HHHHHHHHHHCCCCCEEEEECCCCCCCCCHH
T ss_conf 99998875043897899999762056578899-9999999874668867999697610554301
No 251
>TIGR00750 lao LAO/AO transport system ATPase; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli K-12, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase..
Probab=98.52 E-value=2.4e-07 Score=67.42 Aligned_cols=169 Identities=27% Similarity=0.354 Sum_probs=103.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCC-----------------CEE-CCCCH----HHHHCCCEEEEEEEEEEE
Q ss_conf 99985468987788999999839614232200-----------------000-38857----798709606467999998
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVS-----------------ERV-MDCND----LEKERGITILAKVTSIVW 79 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~-----------------~~v-mD~~~----~EreRGITI~a~~~~~~~ 79 (624)
|+|-|--++|||||+|+|-.. .+++.-.|. ||. |+.++ +=..=|+=|-|-.++=..
T Consensus 41 vG~TG~PGaGKSTl~~~l~~~--lrRrG~~VaViAvDP~SPfTGGsiLGDr~Rm~~~asrkqlW~dPg~FIRs~ptrG~l 118 (333)
T TIGR00750 41 VGITGVPGAGKSTLVEKLIME--LRRRGLKVAVIAVDPSSPFTGGSILGDRLRMQRLASRKQLWTDPGVFIRSMPTRGSL 118 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHH--HHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCH
T ss_conf 766468888577799999899--976597689998879759755145456887754422223322898567677666752
Q ss_pred ----------------CCEEEEEECCCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf ----------------9979999728987540799999987421789999768788647899999999729978999975
Q gi|254780233|r 80 ----------------NDVRINIVDTPGHADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNK 143 (624)
Q Consensus 80 ----------------~~~~iNiiDTPGH~DF~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINK 143 (624)
-||-.-||-|=|=- ..||+ +.+|+|+.|+|-=|--|=+.|+- ||--+-+-=|+||||
T Consensus 119 GGls~at~~~~~lldA~G~DVI~vETVGVG--QSEVd-i~~~aDT~v~v~~pg~GDd~Q~i----KaG~mEiaDI~VVNK 191 (333)
T TIGR00750 119 GGLSKATRELVKLLDAAGYDVILVETVGVG--QSEVD-IINMADTFVVVTIPGTGDDVQGI----KAGVMEIADIYVVNK 191 (333)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEEECCC--HHHHH-HHHHHCEEEEEECCCCCCHHHHH----HHHHHEEEEEEEEEC
T ss_conf 578799999999998638987999841575--24878-87341505898548878346666----544302324878816
Q ss_pred CCCCCCCH-HHHHHHHHHHHHH-------C-CCCHHHC---CH---------HHHHHHHHCCEECCCCCCCCCCCCHHHH
Q ss_conf 43667402-5689999988862-------2-6730110---42---------6688788659164674223348641355
Q gi|254780233|r 144 VDRSDARA-DEVINEVFDLFSA-------L-DATDAQL---DF---------PILYGSGRFGWMSDSSDGSRDQGMVPLL 202 (624)
Q Consensus 144 iDr~~a~~-~~v~~ei~dlf~~-------l-~a~de~l---d~---------Pv~~~Sa~~G~~~~~~~~~~~~gl~~Ll 202 (624)
-|+++|+- .....-.+.+=.+ + .|++... ++ ||+-+||..| .|+.+|-
T Consensus 192 aD~~~a~~v~~~a~~~l~l~~esvqmlsqmthadearvq~G~~~~r~~gW~Ppv~~tsA~~G-----------~Gi~EL~ 260 (333)
T TIGR00750 192 ADGEGAEEVKTLARLMLALDLESVQMLSQMTHADEARVQKGEIYRREKGWRPPVLKTSAVEG-----------RGIDELW 260 (333)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCEEEEECCCC-----------CCCHHHH
T ss_conf 88766589999999988888889999986533334443026551101058996388733568-----------8716789
Q ss_pred HHHHCCCC
Q ss_conf 53210245
Q gi|254780233|r 203 NLIVDHVP 210 (624)
Q Consensus 203 d~Ii~~iP 210 (624)
|+|.+|..
T Consensus 261 daI~eH~~ 268 (333)
T TIGR00750 261 DAIEEHKK 268 (333)
T ss_pred HHHHHHHH
T ss_conf 99999999
No 252
>KOG0073 consensus
Probab=98.51 E-value=1.2e-06 Score=62.88 Aligned_cols=143 Identities=24% Similarity=0.359 Sum_probs=97.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHH
Q ss_conf 43149998546898778899999983961423220000038857798709606467999998997999972898754079
Q gi|254780233|r 18 QIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGG 97 (624)
Q Consensus 18 ~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~g 97 (624)
++| |-|+|--.+||||++.+++... .+++ .--+|.-| .+++|+++++||.|.-|..-+..
T Consensus 16 E~r-iLiLGLdNsGKTti~~kl~~~~---------~~~i------~pt~gf~I----ktl~~~~~~L~iwDvGGq~~lr~ 75 (185)
T KOG0073 16 EVR-ILILGLDNSGKTTIVKKLLGED---------TDTI------SPTLGFQI----KTLEYKGYTLNIWDVGGQKTLRS 75 (185)
T ss_pred EEE-EEEEECCCCCCHHHHHHHCCCC---------CCCC------CCCCCEEE----EEEEECCEEEEEEECCCCCHHHH
T ss_conf 447-9999127898244898853898---------2232------87211355----78774242899997488533687
Q ss_pred HHHHHHHHHCEEEEEEECCCC-CCHHHHHHHHHHHH----CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHC
Q ss_conf 999998742178999976878-86478999999997----2997899997543667402568999998886226730110
Q gi|254780233|r 98 EVERILCMVESVVVLVDAAEG-PMPQTKFVVGKALK----IGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQL 172 (624)
Q Consensus 98 EVer~l~~~DgaiLvVdA~eG-v~~QT~~vl~~A~~----~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~l 172 (624)
==..-..-+||.|.|||..+- .|.+|...++.++. +|-|++|+-||.|.++|--.+-+..+++| .++. ...
T Consensus 76 ~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L-~~l~---ks~ 151 (185)
T KOG0073 76 YWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDL-EELA---KSH 151 (185)
T ss_pred HHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHCH-HHHC---CCC
T ss_conf 887766504728999977208889999999999975654348843999734768552478788876477-8761---336
Q ss_pred CHHHHHHHHHCC
Q ss_conf 426688788659
Q gi|254780233|r 173 DFPILYGSGRFG 184 (624)
Q Consensus 173 d~Pv~~~Sa~~G 184 (624)
++|++-|||.+|
T Consensus 152 ~~~l~~cs~~tg 163 (185)
T KOG0073 152 HWRLVKCSAVTG 163 (185)
T ss_pred CCEEEEEECCCC
T ss_conf 722899854545
No 253
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=98.50 E-value=1.3e-07 Score=69.11 Aligned_cols=78 Identities=21% Similarity=0.299 Sum_probs=62.0
Q ss_pred HHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCC--CC-
Q ss_conf 000011110136777349999960780515988999605785012114553011036653444112545543222--23-
Q gi|254780233|r 218 EFKMIGTILEKDPFLGRIVTGRIHSGTIKSNQNIKALSPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSIA--GL- 294 (624)
Q Consensus 218 pl~~~V~~i~~d~y~Gria~gRV~sGtlk~Gd~V~vl~~~g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIvaIa--Gl- 294 (624)
||+|.|..+.. ..|.+.+|||+||+++.||+|.++. .+. ..+|..|+.+ ..++++|.|||.|++. |+
T Consensus 1 PlR~pi~dv~k--g~G~vV~G~vesG~v~~Gd~v~i~P-~~~---~~~Vk~I~~~----~~~v~~A~aGd~V~l~L~gvd 70 (82)
T cd04089 1 PLRLPIIDKYK--DMGTVVLGKVESGTIKKGDKLLVMP-NKT---QVEVLSIYNE----DVEVRYARPGENVRLRLKGIE 70 (82)
T ss_pred CEEEEEEEEEE--CCCEEEEEEEEEEEECCCCEEEEEC-CCC---EEEEEEEEEC----CEEECEECCCCCEEEEECCCC
T ss_conf 97826878992--8988999999367782999999958-998---8999999999----979588869973268884888
Q ss_pred -CCCCCCCEECC
Q ss_conf -32101221105
Q gi|254780233|r 295 -VKATVADTFCD 305 (624)
Q Consensus 295 -~~~~iGDTL~~ 305 (624)
.++..||.||+
T Consensus 71 ~~~i~rG~vlcs 82 (82)
T cd04089 71 EEDISPGFVLCS 82 (82)
T ss_pred HHHCCCCCEECC
T ss_conf 884478879959
No 254
>PRK12297 obgE GTPase ObgE; Reviewed
Probab=98.49 E-value=2.5e-06 Score=60.79 Aligned_cols=155 Identities=19% Similarity=0.303 Sum_probs=91.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCC-EEEEEEEEEEEC-CEEEEEECCCCCCC-
Q ss_conf 431499985468987788999999839614232200000388577987096-064679999989-97999972898754-
Q gi|254780233|r 18 QIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGI-TILAKVTSIVWN-DVRINIVDTPGHAD- 94 (624)
Q Consensus 18 ~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGI-TI~a~~~~~~~~-~~~iNiiDTPGH~D- 94 (624)
-|-.|++||---+|||||.-++ |.+-.+ +. ||- . |+.-..--+.|+ +..+.+.|-||-..
T Consensus 157 liADVGLvG~PNaGKSTll~~i---s~A~pk---Ia----~Yp-------FTTl~P~lGvv~~~~~~~~~iADiPGLIeG 219 (429)
T PRK12297 157 LLADVGLVGFPNVGKSTLLSVV---SNAKPK---IA----NYH-------FTTLVPNLGVVETDDGRSFVMADLPGLIEG 219 (429)
T ss_pred EECCCCEEECCCCCHHHHHHHH---HCCCCC---CC----CCC-------CCCCCCEEEEEEECCCCEEEEEECCCCCCC
T ss_conf 5327633647998457899887---548975---57----877-------402576666898569866999626745677
Q ss_pred ------CHHHHHHHHHHHCEEEEEEECC--CCCCH--HHHHHHHH-----HHHCCCCEEEEEECCCCCCCCHHHHHHHHH
Q ss_conf ------0799999987421789999768--78864--78999999-----997299789999754366740256899999
Q gi|254780233|r 95 ------FGGEVERILCMVESVVVLVDAA--EGPMP--QTKFVVGK-----ALKIGLRPIVVVNKVDRSDARADEVINEVF 159 (624)
Q Consensus 95 ------F~gEVer~l~~~DgaiLvVdA~--eGv~~--QT~~vl~~-----A~~~~l~~IvvINKiDr~~a~~~~v~~ei~ 159 (624)
-+-+.-|-+.-+..-+.|||++ ++--| +-+.+... ..-...|.||++||||.+++ ++.++++.
T Consensus 220 A~~g~GLG~~FLrHieR~~~L~hviD~s~~~~~dp~~d~~~i~~EL~~y~~~L~~kp~ivv~NK~Dl~~~--~~~~~~~~ 297 (429)
T PRK12297 220 ASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYETINKELKKYNLRLLERPQIIVANKMDLPEA--EENLEEFK 297 (429)
T ss_pred CCCCCCCCHHHHHHHHHCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCHHHHCCCEEEEEECCCCCCH--HHHHHHHH
T ss_conf 4468886688888766246799999787877779899999999999986898726966999976458576--99999999
Q ss_pred HHHHHCCCCHHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 888622673011042668878865916467422334864135553210245
Q gi|254780233|r 160 DLFSALDATDAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVP 210 (624)
Q Consensus 160 dlf~~l~a~de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP 210 (624)
..|. + ..++++.||.+| +|+..|++.+.+.+.
T Consensus 298 ~~~~----~----~~~i~~iSa~t~-----------egl~~l~~~i~~~l~ 329 (429)
T PRK12297 298 EKLA----K----GKKVFPISALTK-----------QGLDELLYAIAELLE 329 (429)
T ss_pred HHHH----C----CCCEEEEECCCC-----------CCHHHHHHHHHHHHH
T ss_conf 9753----4----697899968445-----------199999999999998
No 255
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=98.48 E-value=2.9e-06 Score=60.31 Aligned_cols=154 Identities=13% Similarity=0.165 Sum_probs=89.7
Q ss_pred CC-EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEE-EEEEEEECC--EEEEEECCCCCCC
Q ss_conf 31-4999854689877889999998396142322000003885779870960646-799999899--7999972898754
Q gi|254780233|r 19 IR-NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILA-KVTSIVWND--VRINIVDTPGHAD 94 (624)
Q Consensus 19 IR-NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a-~~~~~~~~~--~~iNiiDTPGH~D 94 (624)
|| -|.++|...-|||+|+-+.. .+.|.+.-. -||.. ....+..++ +++.|.||+|+.+
T Consensus 4 ik~KivlvGd~~VGKTsLi~r~~--~~~F~~~y~----------------pTi~~~~~~~~~i~~~~v~l~iwDTaGqe~ 65 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFA--KDCFPENYV----------------PTVFENYTASFEIDTQRIELSLWDTSGSPY 65 (182)
T ss_pred EEEEEEEECCCCCCHHHHHHHHH--HCCCCCCCC----------------CEEEEEEEEEEEECCEEEEEEEEECCCCHH
T ss_conf 04899999999989999999998--399999868----------------735322689999999999999996898620
Q ss_pred CHHHHHHHHHHHCEEEEEEECCCCCCHHH-HHHHHHHHH---CCCCEEEEEECCCCCCCCHHH----------H-HHHHH
Q ss_conf 07999999874217899997687886478-999999997---299789999754366740256----------8-99999
Q gi|254780233|r 95 FGGEVERILCMVESVVVLVDAAEGPMPQT-KFVVGKALK---IGLRPIVVVNKVDRSDARADE----------V-INEVF 159 (624)
Q Consensus 95 F~gEVer~l~~~DgaiLvVdA~eGv~~QT-~~vl~~A~~---~~l~~IvvINKiDr~~a~~~~----------v-~~ei~ 159 (624)
|..-.....+-+|++||+-|-.+=--=+. ...|..-.+ -+.|+|++-||.|..+..... | .+|-.
T Consensus 66 f~~l~~~~y~~~~~~ilvydit~~~Sf~~v~~~W~~ei~~~~~~~~iiLVGnK~DLr~~~~~~~~l~~~~~~~Vs~eeg~ 145 (182)
T cd04172 66 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGA 145 (182)
T ss_pred CCCCCHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHH
T ss_conf 12212555127878999964897788999999999999986879988999617101244145667764567786999999
Q ss_pred HHHHHCCCCHHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHH
Q ss_conf 88862267301104266887886591646742233486413555321
Q gi|254780233|r 160 DLFSALDATDAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIV 206 (624)
Q Consensus 160 dlf~~l~a~de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii 206 (624)
.+-.++++ .+.+.+||++| ..|+..+|+...
T Consensus 146 ~~A~~~g~------~~y~EtSAk~~----------~n~V~e~F~~a~ 176 (182)
T cd04172 146 NMAKQIGA------ATYIECSALQS----------ENSVRDIFHVAT 176 (182)
T ss_pred HHHHHCCC------CEEEECCCCCC----------CCCHHHHHHHHH
T ss_conf 99997699------79999170789----------959899999999
No 256
>pfam03308 ArgK ArgK protein. The ArgK protein acts as an ATPase enzyme and as a kinase, and phosphorylates periplasmic binding proteins involved in the LAO (lysine, arginine, ornithine)/AO transport systems.
Probab=98.48 E-value=4.6e-07 Score=65.58 Aligned_cols=166 Identities=27% Similarity=0.323 Sum_probs=104.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCC-----------------CEE-CCCCHHHHHCCCEEEEEEEE-----
Q ss_conf 1499985468987788999999839614232200-----------------000-38857798709606467999-----
Q gi|254780233|r 20 RNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVS-----------------ERV-MDCNDLEKERGITILAKVTS----- 76 (624)
Q Consensus 20 RNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~-----------------~~v-mD~~~~EreRGITI~a~~~~----- 76 (624)
.-|+|-|--++|||||+|+|...-- .+..+|. ||+ |.. +-+..++=|-|..+.
T Consensus 30 ~~iGiTG~PGaGKStli~~l~~~~~--~~g~~vaVlAvDPSS~~sgGaiLGDr~RM~~--~~~~~~vfiRs~~srg~lGG 105 (267)
T pfam03308 30 HRVGITGVPGAGKSTLIEALGMELR--RRGHRVAVLAVDPSSPFTGGSILGDRTRMQR--LAVDPGAFIRSSPSRGALGG 105 (267)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH--HCCCEEEEEEECCCCCCCCCCCCCCHHHHHH--HCCCCCEEEEECCCCCCCCC
T ss_conf 5998768998879999999999999--6898689999789998888630010777765--05899858864577888887
Q ss_pred -----------EEECCEEEEEECCCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf -----------998997999972898754079999998742178999976878864789999999972997899997543
Q gi|254780233|r 77 -----------IVWNDVRINIVDTPGHADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVD 145 (624)
Q Consensus 77 -----------~~~~~~~iNiiDTPGH~DF~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiD 145 (624)
++.-++-+-||-|-|--- .|++ +.+|+|..+||.-.-.|=+.|.. ||--.-+.=|++|||.|
T Consensus 106 ls~~t~~~i~lleaaGfD~IivETVGVGQ--sE~~-v~~~aD~~llv~~Pg~GDeiQ~i----KaGImEiaDi~vVNKaD 178 (267)
T pfam03308 106 LSRATREAILLLDAAGFDVIIIETVGVGQ--SEVD-IANMADTFVLVTIPGGGDDLQGI----KAGLMEIADIYVVNKAD 178 (267)
T ss_pred CCHHHHHHHHHHHHCCCCEEEEECCCCCC--CCHH-HHHHCCEEEEEECCCCCHHHHHH----HHHHHHHCCEEEEECCC
T ss_conf 14769999999997799999992477775--3035-55415768999558876088898----75376535489996676
Q ss_pred CCCCCHHHHHHHHHHHHHHCC-CCHHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 667402568999998886226-73011042668878865916467422334864135553210245
Q gi|254780233|r 146 RSDARADEVINEVFDLFSALD-ATDAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVP 210 (624)
Q Consensus 146 r~~a~~~~v~~ei~dlf~~l~-a~de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP 210 (624)
+++|+ ....++...+ .+. .....-.-||+.+||.+| .|+++|.++|.+|..
T Consensus 179 ~~~A~--~~~~~l~~~l-~l~~~~~~~W~p~Vl~tSA~~g-----------~Gi~el~~~I~~~~~ 230 (267)
T pfam03308 179 LPGAE--RTARELRSAL-HLLTPKEAGWRPPVLTTSAVTG-----------EGIDELWDAIEEHRE 230 (267)
T ss_pred HHHHH--HHHHHHHHHH-HCCCCCCCCCCCCEEEEECCCC-----------CCHHHHHHHHHHHHH
T ss_conf 47699--9999999998-5179877899999899874788-----------999999999999999
No 257
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=98.47 E-value=1.5e-06 Score=62.14 Aligned_cols=150 Identities=15% Similarity=0.197 Sum_probs=91.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHHH
Q ss_conf 99985468987788999999839614232200000388577987096064679999989979999728987540799999
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVER 101 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVer 101 (624)
|+++|..+-|||+|+-+.+ .|.|...- .+.. | -..+...+.-..+.+.|.||.|...| +
T Consensus 3 ivllGd~~VGKTsl~~Rf~--~~~F~~~~---------~pt~---~--~~~~~~~vdg~~~~l~i~DTaG~~~~-----~ 61 (158)
T cd04103 3 LGIVGNLQSGKSALVHRYL--TGSYVQLE---------SPEG---G--RFKKEVLVDGQSHLLLIRDEGGAPDA-----Q 61 (158)
T ss_pred EEEECCCCCCHHHHHHHHH--HCCCCCCC---------CCCC---C--EEEEEEEECCEEEEEEEEECCCCCCH-----H
T ss_conf 9999969987999999998--09478744---------4664---4--17999999999999999958998343-----3
Q ss_pred HHHHHCEEEEEEECCCCCCHHHHHHHH-HHHH----CCCCEEEEEECCCCCCCCHHHHH-HHHHHHHHHCCCCHHHCCHH
Q ss_conf 987421789999768788647899999-9997----29978999975436674025689-99998886226730110426
Q gi|254780233|r 102 ILCMVESVVVLVDAAEGPMPQTKFVVG-KALK----IGLRPIVVVNKVDRSDARADEVI-NEVFDLFSALDATDAQLDFP 175 (624)
Q Consensus 102 ~l~~~DgaiLvVdA~eGv~~QT~~vl~-~A~~----~~l~~IvvINKiDr~~a~~~~v~-~ei~dlf~~l~a~de~ld~P 175 (624)
-.+.+|+++||-|.++=--=+.-.-|. ...+ ..+|.|++-||-|.+..+...|- ++...+..+++ ..+
T Consensus 62 ~~~~ada~ilVydit~~~SF~~v~~~~~~i~~~~~~~~ipiilvGnK~dl~~~~~r~V~~~e~~~~a~~~~------~~~ 135 (158)
T cd04103 62 FASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMK------RCS 135 (158)
T ss_pred HHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCEECCHHHHHHHHHHCC------CCE
T ss_conf 32149989999988988899999999999998559789968999877003657761479999999998569------988
Q ss_pred HHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 6887886591646742233486413555321024
Q gi|254780233|r 176 ILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 176 v~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
.+.+||++| .++..+|+.+++.+
T Consensus 136 f~EtSAk~~-----------~NV~~~F~~~~~~i 158 (158)
T cd04103 136 YYETCATYG-----------LNVERVFQEAAQKI 158 (158)
T ss_pred EEEEECCCC-----------CCHHHHHHHHHHHC
T ss_conf 999017999-----------59899999999639
No 258
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.43 E-value=9.3e-06 Score=56.99 Aligned_cols=153 Identities=16% Similarity=0.210 Sum_probs=90.5
Q ss_pred CCCCC-EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEE-EEEEEECC--EEEEEECCCC
Q ss_conf 02431-49998546898778899999983961423220000038857798709606467-99999899--7999972898
Q gi|254780233|r 16 YMQIR-NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAK-VTSIVWND--VRINIVDTPG 91 (624)
Q Consensus 16 ~~~IR-NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~-~~~~~~~~--~~iNiiDTPG 91 (624)
|..+| -|.++|...-|||+|+-++.. +.|...- --||... ...+..++ .+++|.||-|
T Consensus 9 p~~~~~KiVlVGD~~VGKTsLl~~~~~--~~F~~~y----------------~pTv~~~~~~~i~v~~~~v~L~lWDTAG 70 (232)
T cd04174 9 PLVMRCKLVLVGDVQCGKTAMLQVLAK--DCYPETY----------------VPTVFENYTAGLETEEQRVELSLWDTSG 70 (232)
T ss_pred CCCEEEEEEEECCCCCCHHHHHHHHHH--CCCCCCC----------------CCCEEEEEEEEEEECCEEEEEEEEECCC
T ss_conf 985588999999899899999999973--9899985----------------8836888899999999999999983899
Q ss_pred CCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHH----HHHHHHHH---CCCCEEEEEECCCCCCCCHHHHHHHHH-----
Q ss_conf 754079999998742178999976878864789----99999997---299789999754366740256899999-----
Q gi|254780233|r 92 HADFGGEVERILCMVESVVVLVDAAEGPMPQTK----FVVGKALK---IGLRPIVVVNKVDRSDARADEVINEVF----- 159 (624)
Q Consensus 92 H~DF~gEVer~l~~~DgaiLvVdA~eGv~~QT~----~vl~~A~~---~~l~~IvvINKiDr~~a~~~~v~~ei~----- 159 (624)
+.+|..-..-..+-+|++||+-|-.. ++|- ..|..-+. -+.|+|+|-||.|..+ +. .++.++.
T Consensus 71 qE~y~~lr~~yY~~a~~~ll~Fdvt~---~~Sfe~~~~~Wi~Ei~~~~p~~piiLVGnK~DLr~-d~-~~l~~L~~~~~~ 145 (232)
T cd04174 71 SPYYDNVRPLCYSDSDAVLLCFDISR---PETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRT-DL-STLMELSNQKQA 145 (232)
T ss_pred CCCCCHHHHHHHCCCCEEEEEEECCC---HHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHCCC-CH-HHHHHHHHCCCC
T ss_conf 70100367997406878999996898---79999899999999998689997899987602154-75-778899756888
Q ss_pred --------HHHHHCCCCHHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHC
Q ss_conf --------888622673011042668878865916467422334864135553210
Q gi|254780233|r 160 --------DLFSALDATDAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVD 207 (624)
Q Consensus 160 --------dlf~~l~a~de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~ 207 (624)
.+-.+++|. ..+.+||++| ..+++.+|++...
T Consensus 146 pVt~eeg~~~Ak~iga~------~Y~E~SA~tg----------e~~v~~vF~~a~~ 185 (232)
T cd04174 146 PISYEQGCALAKQLGAE------VYLECSAFTS----------EKSIHSIFRSASL 185 (232)
T ss_pred CCCHHHHHHHHHHCCCC------EEEECCCCCC----------CCCHHHHHHHHHH
T ss_conf 75799999999974997------8998756866----------6259999999999
No 259
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=98.43 E-value=7.7e-06 Score=57.54 Aligned_cols=156 Identities=13% Similarity=0.182 Sum_probs=84.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEE-------CCEEEEEECCCCCCC
Q ss_conf 9998546898778899999983961423220000038857798709606467999998-------997999972898754
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVW-------NDVRINIVDTPGHAD 94 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~-------~~~~iNiiDTPGH~D 94 (624)
|.++|-.+-|||||+.++.... +...-. .+ =|.++..+. +.| +.+++.|.||.|...
T Consensus 3 IlllGDsgVGKTSL~~~~~~~~--f~~~~~--~T----------iG~~v~~k~--~~~~~~~~~~k~~~l~lWDtaGqer 66 (202)
T cd04102 3 VLVVGDSGVGKSSLVHLICKNQ--VLGRPS--WT----------VGCSVDVKH--HTYKEGTPEEKTFFVELWDVGGSES 66 (202)
T ss_pred EEEECCCCCCHHHHHHHHHCCC--CCCCCC--CC----------EEEEEEEEE--EEECCCCCCCCEEEEEEEECCCCHH
T ss_conf 9999999989999999998398--888888--85----------036789999--9933787678389999998998775
Q ss_pred CHHHHHHHHHHHCEEEEEEECCCCCCHHHHH---HHHH-HH----------------------HCCCCEEEEEECCCCCC
Q ss_conf 0799999987421789999768788647899---9999-99----------------------72997899997543667
Q gi|254780233|r 95 FGGEVERILCMVESVVVLVDAAEGPMPQTKF---VVGK-AL----------------------KIGLRPIVVVNKVDRSD 148 (624)
Q Consensus 95 F~gEVer~l~~~DgaiLvVdA~eGv~~QT~~---vl~~-A~----------------------~~~l~~IvvINKiDr~~ 148 (624)
|..-...-.+-+||+|||-|-+.= +|-. -|.+ .+ ...+|++|+=||.|+-.
T Consensus 67 y~sl~~~yYr~a~gvILVyDvTnr---~SF~nL~~Wl~Eil~~~~~~~~~~~~~~~~~~~~~~~~~vPilvVGtK~D~~~ 143 (202)
T cd04102 67 VKSTRAVFYNQVNGIILVHDLTNR---KSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIP 143 (202)
T ss_pred HHHHHHHHHCCCCEEEEEEECCCH---HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECHHHCC
T ss_conf 776789975889899999989498---99986999999997536766654556665553334678975899976065243
Q ss_pred CCH---HHHHHHHHHH-HHHCCCCHHHCC---HHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 402---5689999988-862267301104---26688788659164674223348641355532102
Q gi|254780233|r 149 ARA---DEVINEVFDL-FSALDATDAQLD---FPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDH 208 (624)
Q Consensus 149 a~~---~~v~~ei~dl-f~~l~a~de~ld---~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~ 208 (624)
.+. ..+... .+- -.+++|++-.++ -+.+.++++++ ..+...||..++.
T Consensus 144 ~r~~~~~~~~~~-~~~ia~q~~~eei~~~c~~~~~~~~~~~~~-----------~kl~~ff~~vie~ 198 (202)
T cd04102 144 EKESSGNLVLTA-RGFVAEQGNAEEINLNCTNGRLLAAGSSDA-----------VKLSRFFDKVIEK 198 (202)
T ss_pred CCCCCCCHHHHH-HHHHHHHCCHHHHHHHCCCCCCCCCCCCCH-----------HHHHHHHHHHHHH
T ss_conf 435554235553-025777516678887456844003467551-----------6899999999888
No 260
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=98.43 E-value=2.5e-07 Score=67.32 Aligned_cols=83 Identities=33% Similarity=0.422 Sum_probs=64.5
Q ss_pred HHCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCC--CCCC-
Q ss_conf 0001111013677734999996078051598899960578501211455301103665344411254554322--2233-
Q gi|254780233|r 219 FKMIGTILEKDPFLGRIVTGRIHSGTIKSNQNIKALSPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSI--AGLV- 295 (624)
Q Consensus 219 l~~~V~~i~~d~y~Gria~gRV~sGtlk~Gd~V~vl~~~g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIvaI--aGl~- 295 (624)
|+|.|..+..-+..|.+.+|+|.+|+++.||++.++.. ++. ...+|..|..+ +.++++|.|||.|++ .|++
T Consensus 1 F~m~Id~~f~v~G~GtVvtGtv~~G~i~~gd~v~i~~~-~~~-~~~~V~sIq~~----~~~v~~a~aG~rv~l~l~gi~~ 74 (87)
T cd03697 1 FLMPIEDVFSIPGRGTVVTGRIERGTIKVGDEVEIVGF-GET-LKTTVTGIEMF----RKTLDEAEAGDNVGVLLRGVKR 74 (87)
T ss_pred CEEEEEEEEECCCEEEEEEEEECCCCEECCCEEEEECC-CCC-CEEEEEEEHHC----CCCCCCCCCCCEEEEEECCCCH
T ss_conf 97368169966986899999955260847999999728-997-18999990871----9433537986799999858888
Q ss_pred -CCCCCCEECCCC
Q ss_conf -210122110556
Q gi|254780233|r 296 -KATVADTFCDPS 307 (624)
Q Consensus 296 -~~~iGDTL~~~~ 307 (624)
++.-|+.||+|+
T Consensus 75 ~~i~rG~vl~~pG 87 (87)
T cd03697 75 EDVERGMVLAKPG 87 (87)
T ss_pred HHCCCCCEEECCC
T ss_conf 9837703994799
No 261
>COG2262 HflX GTPases [General function prediction only]
Probab=98.43 E-value=5.2e-06 Score=58.67 Aligned_cols=154 Identities=21% Similarity=0.319 Sum_probs=93.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEEC-CEEEEEECCCCCCC-
Q ss_conf 2431499985468987788999999839614232200000388577987096064679999989-97999972898754-
Q gi|254780233|r 17 MQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWN-DVRINIVDTPGHAD- 94 (624)
Q Consensus 17 ~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~-~~~iNiiDTPGH~D- 94 (624)
..|--||++|--.+|||||..+| +|.. --+++... -|.-.+.-.+.+. +.++-+-||=|..+
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~L---T~~~---~~~~d~LF----------ATLdpttR~~~l~~g~~vlLtDTVGFI~~ 253 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNAL---TGAD---VYVADQLF----------ATLDPTTRRIELGDGRKVLLTDTVGFIRD 253 (411)
T ss_pred CCCCEEEEEEECCCCHHHHHHHH---HCCC---EECCCCCC----------CCCCCCEEEEEECCCCEEEEECCCCCCCC
T ss_conf 69975898732344499999887---2457---13046664----------21057404898079964998657567155
Q ss_pred --------CHHHHHHHHHHHCEEEEEEECCCC-CCHHHHHHHHHHHHC---CCCEEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf --------079999998742178999976878-864789999999972---99789999754366740256899999888
Q gi|254780233|r 95 --------FGGEVERILCMVESVVVLVDAAEG-PMPQTKFVVGKALKI---GLRPIVVVNKVDRSDARADEVINEVFDLF 162 (624)
Q Consensus 95 --------F~gEVer~l~~~DgaiLvVdA~eG-v~~QT~~vl~~A~~~---~l~~IvvINKiDr~~a~~~~v~~ei~dlf 162 (624)
|-.-.|- ..-+|-.|.||||++- +..|-+.|..--.+. ..|.|++.||+|+-... .....+..
T Consensus 254 LP~~LV~AFksTLEE-~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~--~~~~~~~~-- 328 (411)
T COG2262 254 LPHPLVEAFKSTLEE-VKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDE--EILAELER-- 328 (411)
T ss_pred CCHHHHHHHHHHHHH-HHCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCH--HHHHHHHH--
T ss_conf 986799999998987-6227779997406885189999999999997488999789997641015732--22345663--
Q ss_pred HHCCCCHHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf 6226730110426688788659164674223348641355532102454
Q gi|254780233|r 163 SALDATDAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPP 211 (624)
Q Consensus 163 ~~l~a~de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~ 211 (624)
+. . +.++.||++| .|++.|++.|.+.++.
T Consensus 329 ---~~-----~-~~v~iSA~~~-----------~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 329 ---GS-----P-NPVFISAKTG-----------EGLDLLRERIIELLSG 357 (411)
T ss_pred ---CC-----C-CEEEEEECCC-----------CCHHHHHHHHHHHHHH
T ss_conf ---48-----9-7489980667-----------5989999999998631
No 262
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.42 E-value=5.8e-06 Score=58.37 Aligned_cols=119 Identities=21% Similarity=0.313 Sum_probs=83.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCC-CEEEEEEEEEEECCEEEEEECCCCCCCCHHHH
Q ss_conf 49998546898778899999983961423220000038857798709-60646799999899799997289875407999
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERG-ITILAKVTSIVWNDVRINIVDTPGHADFGGEV 99 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRG-ITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEV 99 (624)
=|||+|--+.|||||+..|.++-.-.+ ...+ +| ||| +.-+..+++||.+| .|-.+-+
T Consensus 41 vVavvGPpgvGKtTLiksLvk~ytk~~-l~~i-------------~GPiTv------vs~K~rRiTfiEc~--nDi~smi 98 (225)
T cd01882 41 VVAVVGPPGVGKTTLIKSLVKNYTKQN-ISDI-------------KGPITV------VTGKKRRLTFIECP--NDINAMI 98 (225)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC-CCCC-------------CCCEEE------EECCCEEEEEEECC--CHHHHHH
T ss_conf 999989899778899999999985443-7557-------------888799------94684268999748--6099998
Q ss_pred HHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEE-EEECCCCCC--CCHHHHHHHHHHHH
Q ss_conf 9998742178999976878864789999999972997899-997543667--40256899999888
Q gi|254780233|r 100 ERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIV-VVNKVDRSD--ARADEVINEVFDLF 162 (624)
Q Consensus 100 er~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~Iv-vINKiDr~~--a~~~~v~~ei~dlf 162 (624)
. +..++|-+||+|||..|.+-.|-.-|..+...|+|.++ +++.+|.-. ....+....++.-|
T Consensus 99 D-~AKvADlVLl~iD~s~GfEmEtfEfLnilq~hG~PkV~GVltHlD~fk~~k~lrk~KK~lk~RF 163 (225)
T cd01882 99 D-IAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRF 163 (225)
T ss_pred H-HHHHHHEEEEEECCCCCEEEEHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf 7-8876433688861665535208999999997599943788544310155788999999999999
No 263
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=98.36 E-value=1.7e-05 Score=55.34 Aligned_cols=145 Identities=15% Similarity=0.205 Sum_probs=87.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEE-EEEEEECC--EEEEEECCCCCCCCHHH
Q ss_conf 9998546898778899999983961423220000038857798709606467-99999899--79999728987540799
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAK-VTSIVWND--VRINIVDTPGHADFGGE 98 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~-~~~~~~~~--~~iNiiDTPGH~DF~gE 98 (624)
|.++|..+-|||+|+-+.. .+.|...- --||... ...+.+++ ++++|.||.|..+|..-
T Consensus 4 iVlvGD~~VGKTsLl~~f~--~~~F~~~y----------------~pTi~~~~~~~~~vd~~~v~L~iWDTAGqE~y~~l 65 (222)
T cd04173 4 IVVVGDAECGKTALLQVFA--KDAYPGSY----------------VPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNV 65 (222)
T ss_pred EEEECCCCCCHHHHHHHHH--CCCCCCCC----------------CCCEEEEEEEEEEECCEEEEEEEECCCCCCHHHHH
T ss_conf 9998989989899999996--39999984----------------78458778999999999999999768885034556
Q ss_pred HHHHHHHHCEEEEEEECCCCCCHHH----HHHHHHHHH---CCCCEEEEEECCCCCCCCHHHHHHHH-------------
Q ss_conf 9999874217899997687886478----999999997---29978999975436674025689999-------------
Q gi|254780233|r 99 VERILCMVESVVVLVDAAEGPMPQT----KFVVGKALK---IGLRPIVVVNKVDRSDARADEVINEV------------- 158 (624)
Q Consensus 99 Ver~l~~~DgaiLvVdA~eGv~~QT----~~vl~~A~~---~~l~~IvvINKiDr~~a~~~~v~~ei------------- 158 (624)
..-..+-+|++||+-|-..= ++ ..-|..-.. -+.|+|+|-||.|.-+ ++ ..+.++
T Consensus 66 r~~yyr~a~~~llvfdit~~---~SF~~v~~~W~~ei~~~~p~~piiLVGnK~DLR~-d~-~~~~el~~~~~~pVt~eeg 140 (222)
T cd04173 66 RPLAYPDSDAVLICFDISRP---ETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRT-DL-ATLRELSKQRLIPVTHEQG 140 (222)
T ss_pred HHHHCCCCCEEEEEEECCCH---HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC-CH-HHHHHHHHCCCCCCCHHHH
T ss_conf 78750369899999838977---8899999999999998589997899958742456-87-8899998557888789999
Q ss_pred HHHHHHCCCCHHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHH
Q ss_conf 98886226730110426688788659164674223348641355532
Q gi|254780233|r 159 FDLFSALDATDAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLI 205 (624)
Q Consensus 159 ~dlf~~l~a~de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~I 205 (624)
..+-.++|| .+.+.+||+.| ..|+..+|+..
T Consensus 141 ~~lA~~~ga------~~y~EcSAk~~----------~n~V~evF~~a 171 (222)
T cd04173 141 TVLAKQVGA------VSYVECSSRSS----------ERSVRDVFHVA 171 (222)
T ss_pred HHHHHHCCC------CEEEECCCCCC----------CCCHHHHHHHH
T ss_conf 999997699------88998884868----------74989999999
No 264
>KOG1191 consensus
Probab=98.33 E-value=2.9e-06 Score=60.31 Aligned_cols=20 Identities=35% Similarity=0.607 Sum_probs=9.3
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 49998546898778899999
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELL 40 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL 40 (624)
+|||+|--..||+||+.+|.
T Consensus 270 ~iaIvGrPNvGKSSLlNaL~ 289 (531)
T KOG1191 270 QIAIVGRPNVGKSSLLNALS 289 (531)
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 28997699877889998875
No 265
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=98.33 E-value=8.8e-07 Score=63.72 Aligned_cols=79 Identities=27% Similarity=0.347 Sum_probs=59.8
Q ss_pred HHCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCC--
Q ss_conf 000111101367773499999607805159889996057850121145530110366534441125455432222332--
Q gi|254780233|r 219 FKMIGTILEKDPFLGRIVTGRIHSGTIKSNQNIKALSPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSIAGLVK-- 296 (624)
Q Consensus 219 l~~~V~~i~~d~y~Gria~gRV~sGtlk~Gd~V~vl~~~g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIvaIaGl~~-- 296 (624)
|+|.|..+.....-+|...|||.+|+++.||+|.++ |+++. .+|.+|+.+. .++++|.|||-+++.=-++
T Consensus 1 fr~PVQ~V~r~~~~~R~~~G~v~sG~v~~GD~v~i~-Psg~~---a~Vk~I~~~~----~~~~~A~aG~~v~l~L~~eid 72 (81)
T cd03695 1 FRFPVQYVIRPNADFRGYAGTIASGSIRVGDEVVVL-PSGKT---SRVKSIETFD----GELDEAGAGESVTLTLEDEID 72 (81)
T ss_pred CCCCEEEEEECCCCCCEEEEEEEECCEECCCEEEEC-CCCCC---EEEEEEEECC----CCCCEECCCCEEEEEECCCCC
T ss_conf 932518998269984689999933558389999968-99981---8998999589----982488799828999787311
Q ss_pred CCCCCEECC
Q ss_conf 101221105
Q gi|254780233|r 297 ATVADTFCD 305 (624)
Q Consensus 297 ~~iGDTL~~ 305 (624)
+.-||.|++
T Consensus 73 isRGdvi~s 81 (81)
T cd03695 73 VSRGDVIVA 81 (81)
T ss_pred CCCCCEEEC
T ss_conf 579879859
No 266
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.32 E-value=2.6e-06 Score=60.69 Aligned_cols=111 Identities=18% Similarity=0.338 Sum_probs=71.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCC-C--
Q ss_conf 3149998546898778899999983961423220000038857798709606467999998997999972898754-0--
Q gi|254780233|r 19 IRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHAD-F-- 95 (624)
Q Consensus 19 IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~D-F-- 95 (624)
.-.+|+||---.|||||.-+| |++.++.+.-+=+ |...-.--++|+|.+|-|+|+||-.. +
T Consensus 63 da~v~lVGfPsvGKStLL~~L---Tnt~seva~y~FT-------------Tl~~vPG~l~Y~ga~IQild~Pgii~gas~ 126 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKL---TNTKSEVADYPFT-------------TLEPVPGMLEYKGAQIQLLDLPGIIEGASS 126 (365)
T ss_pred CEEEEEECCCCCCHHHHHHHH---HCCCCCCCCCCCE-------------ECCCCCCEEEECCCEEEEECCCCCCCCCCC
T ss_conf 738999768874589999887---6887643456741-------------024457447547816999727631257656
Q ss_pred ----HHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCC-----CEEEEEECCCC
Q ss_conf ----7999999874217899997687886478999999997299-----78999975436
Q gi|254780233|r 96 ----GGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGL-----RPIVVVNKVDR 146 (624)
Q Consensus 96 ----~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l-----~~IvvINKiDr 146 (624)
+-||-.+.+-||..++|+|+.+.+. |-..+.+.....|+ |+-|.|-|-++
T Consensus 127 g~grG~~vls~~R~ADlIiiVld~~~~~~-~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~ 185 (365)
T COG1163 127 GRGRGRQVLSVARNADLIIIVLDVFEDPH-HRDIIERELEDVGIRLNKRPPDVTIKKKES 185 (365)
T ss_pred CCCCCCEEEEEECCCCEEEEEEECCCCHH-HHHHHHHHHHHCCEEECCCCCCEEEEEECC
T ss_conf 88876465465215888999971688824-889999999856768217999659999525
No 267
>PTZ00099 rab6; Provisional
Probab=98.29 E-value=3.3e-06 Score=60.00 Aligned_cols=122 Identities=18% Similarity=0.177 Sum_probs=77.9
Q ss_pred EEEEEEEEECCEEEEEECCCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHH-H---CCCCEEEEEECCCC
Q ss_conf 4679999989979999728987540799999987421789999768788647899999999-7---29978999975436
Q gi|254780233|r 71 LAKVTSIVWNDVRINIVDTPGHADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKAL-K---IGLRPIVVVNKVDR 146 (624)
Q Consensus 71 ~a~~~~~~~~~~~iNiiDTPGH~DF~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~-~---~~l~~IvvINKiDr 146 (624)
..+...+.=+.++++|.||+|+..|..=+..-.+-++|+|||-|-..=--=+.-.-|.+-+ + .+++++++-||.|+
T Consensus 18 ~~k~i~i~~~~v~l~IWDTAGqE~f~sl~~~y~r~a~~~ilVyDit~~~SF~~l~~W~~~i~~~~~~~~~iiLVGNK~DL 97 (176)
T PTZ00099 18 LSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDL 97 (176)
T ss_pred EEEEEEECCEEEEEEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCH
T ss_conf 99999999999999999799863413576887079867999850420778999999999999853887743999855655
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf 67402568999998886226730110426688788659164674223348641355532102454
Q gi|254780233|r 147 SDARADEVINEVFDLFSALDATDAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPP 211 (624)
Q Consensus 147 ~~a~~~~v~~ei~dlf~~l~a~de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~ 211 (624)
.+.|-- -.+|..++- .+..++.+.+||++| .|+..+|+.|.+.++.
T Consensus 98 ~~~r~V-~~ee~~~~A-------~~~~~~f~EtSAktg-----------~nV~e~F~~la~~i~~ 143 (176)
T PTZ00099 98 GDLRKV-TYEEGMQKA-------QEYNTMFHETSAKAG-----------HNIKVLFKKIAAKLPN 143 (176)
T ss_pred HHHCCC-CHHHHHHHH-------HHCCCEEEEEECCCC-----------CCHHHHHHHHHHHHCC
T ss_conf 861685-999999999-------985999999848999-----------4989999999998608
No 268
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=98.28 E-value=1.1e-06 Score=63.07 Aligned_cols=79 Identities=28% Similarity=0.401 Sum_probs=62.4
Q ss_pred HHCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCC--CCCC-
Q ss_conf 0001111013677734999996078051598899960578501211455301103665344411254554322--2233-
Q gi|254780233|r 219 FKMIGTILEKDPFLGRIVTGRIHSGTIKSNQNIKALSPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSI--AGLV- 295 (624)
Q Consensus 219 l~~~V~~i~~d~y~Gria~gRV~sGtlk~Gd~V~vl~~~g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIvaI--aGl~- 295 (624)
|+|.|..+..-+..|.+.+|+|.||+++.||++.+++ .+ +..+|..|..+ +.++++|.|||.+++ .|++
T Consensus 1 fr~~Id~~F~i~G~GtVvtGtv~sG~i~~gd~l~i~P-~~---~~~~VksI~~~----~~~~~~a~aG~~v~i~L~~i~~ 72 (83)
T cd03696 1 FRLPIDRVFTVKGQGTVVTGTVLSGSVKVGDKVEILP-LG---EETRVRSIQVH----GKDVEEAKAGDRVALNLTGVDA 72 (83)
T ss_pred CEEEEEEEEECCCCEEEEEEEECCCCCCCCCEEEECC-CC---CEEEEEEEEEC----CCEECEECCCCEEEEEEECCCH
T ss_conf 9848868998189579999999679856999999978-77---33899999989----9596889799879999758976
Q ss_pred -CCCCCCEECC
Q ss_conf -2101221105
Q gi|254780233|r 296 -KATVADTFCD 305 (624)
Q Consensus 296 -~~~iGDTL~~ 305 (624)
++.-||.||+
T Consensus 73 ~di~rG~vl~s 83 (83)
T cd03696 73 KDLERGDVLSS 83 (83)
T ss_pred HHCCCCCEEEC
T ss_conf 73586789919
No 269
>pfam00350 Dynamin_N Dynamin family.
Probab=98.28 E-value=5.5e-06 Score=58.48 Aligned_cols=64 Identities=22% Similarity=0.287 Sum_probs=43.0
Q ss_pred CEEEEEECCCCCCCCHH---H-HHHHHHHHCEEEEEEECCCCCCHHHHHHHHH-HHHCCCCEEEEEECC
Q ss_conf 97999972898754079---9-9999874217899997687886478999999-997299789999754
Q gi|254780233|r 81 DVRINIVDTPGHADFGG---E-VERILCMVESVVVLVDAAEGPMPQTKFVVGK-ALKIGLRPIVVVNKV 144 (624)
Q Consensus 81 ~~~iNiiDTPGH~DF~g---E-Ver~l~~~DgaiLvVdA~eGv~~QT~~vl~~-A~~~~l~~IvvINKi 144 (624)
...+.||||||..+-.- + +...++-+|..|+|++|......|-..-|.+ +...+.+.|+++||.
T Consensus 100 ~~~l~lvDtPGl~s~~~~~~~~t~~~i~~~d~il~V~~a~~~~~~~~~~~l~~~~d~~~~r~i~V~tk~ 168 (168)
T pfam00350 100 VPGLTLVDTPGLDSVAVGDQDLTEEYIKPADIILAVVDANHDLSTSEALFLAREVDPNGKRTIGVLTKD 168 (168)
T ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 888189827986544433699999998538669999846951666199999997399998389998188
No 270
>PRK09435 arginine/ornithine transport system ATPase; Provisional
Probab=98.28 E-value=4.5e-06 Score=59.09 Aligned_cols=167 Identities=23% Similarity=0.273 Sum_probs=101.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCC-CCC-----------------CEE-CCCCHHHHHCCCEEEEEEEE-----
Q ss_conf 499985468987788999999839614232-200-----------------000-38857798709606467999-----
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQ-RVS-----------------ERV-MDCNDLEKERGITILAKVTS----- 76 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~-~v~-----------------~~v-mD~~~~EreRGITI~a~~~~----- 76 (624)
-|+|-|--++|||||+++|...-- ..+ +|. ||+ |.. +-..-++=|-|..+.
T Consensus 51 ~iGiTG~pG~GKStli~~l~~~~~---~~g~~v~vlavDPsS~~sgGaiLGDr~Rm~~--~~~~~~~fiRs~~srg~lgg 125 (325)
T PRK09435 51 RIGITGVPGVGKSTFIEALGMHLI---EQGHKVAVLAVDPSSTRTGGSILGDKTRMER--LSRHPNAFIRPSPSSGTLGG 125 (325)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH---HCCCEEEEEEECCCCCCCCCCHHHHHHHHHH--HCCCCCEEEEECCCCCCCCC
T ss_conf 997427999868899999999999---6798589999789999888610103888876--14799848840677888677
Q ss_pred -----------EEECCEEEEEECCCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf -----------998997999972898754079999998742178999976878864789999999972997899997543
Q gi|254780233|r 77 -----------IVWNDVRINIVDTPGHADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVD 145 (624)
Q Consensus 77 -----------~~~~~~~iNiiDTPGH~DF~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiD 145 (624)
++--++-+-||-|-|--- .|++ +..|+|..+||+-...|=..|.. ||--+-+.=+++|||.|
T Consensus 126 ~~~~~~~~~~~~~a~g~d~i~iETvGvGQ--~e~~-v~~~~d~~~~~~~p~~GD~~Q~~----K~GImEiaDi~vVNKaD 198 (325)
T PRK09435 126 VARKTRETMLLCEAAGFDVILVETVGVGQ--SETA-VAGMVDFFLLLQLPGAGDELQGI----KKGIMELADLIVINKAD 198 (325)
T ss_pred CCHHHHHHHHHHHHCCCCEEEEEECCCCH--HHHH-HHHHCCEEEEEECCCCCCHHHHH----HHHHHHHCCEEEEECCC
T ss_conf 33549999999997799989997067771--4889-98742668888358876088998----86577504268997767
Q ss_pred CCCCCH-HHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 667402-56899999888622673011042668878865916467422334864135553210245
Q gi|254780233|r 146 RSDARA-DEVINEVFDLFSALDATDAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVP 210 (624)
Q Consensus 146 r~~a~~-~~v~~ei~dlf~~l~a~de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP 210 (624)
+++... +....++...+.-+....+.-.-||+-+||.+| .|+++|.++|-+|..
T Consensus 199 gd~~~~A~~t~~e~~~aL~l~~~~~~~W~ppVl~~SA~~g-----------~GI~eL~~~I~~h~~ 253 (325)
T PRK09435 199 GDNHTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEG-----------EGIDELWQAIEDHRA 253 (325)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCC-----------CCHHHHHHHHHHHHH
T ss_conf 5565899999999999986078878999999899981589-----------987999999999999
No 271
>pfam04670 Gtr1_RagA Gtr1/RagA G protein conserved region. GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B.
Probab=98.27 E-value=6.4e-05 Score=51.50 Aligned_cols=114 Identities=17% Similarity=0.289 Sum_probs=74.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECC-EEEEEECCCCCCCCHH---
Q ss_conf 999854689877889999998396142322000003885779870960646799999899-7999972898754079---
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWND-VRINIVDTPGHADFGG--- 97 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~-~~iNiiDTPGH~DF~g--- 97 (624)
|-++|.-++|||+.-.-+.... .. . |+.- =|.|+.-....+.+.+ ..+||.|+||+.+|..
T Consensus 2 iLLMG~~~sGKTSi~~vIF~~~------~p-~----dT~~----L~~T~~ve~~~v~~~~~l~l~iwD~pGq~~f~e~~~ 66 (230)
T pfam04670 2 VLLMGLRGSGKSSMRSIIFSNY------SP-R----DTLR----LGATIDVEQSHVRFLGNLTLNLWDCPGQDDFMENYL 66 (230)
T ss_pred EEEECCCCCCHHHHHHHHHCCC------CH-H----HHCC----CCCCCCEEEEEEECCCCCEEEEEECCCCHHHHHHHC
T ss_conf 7875689998777699986799------82-1----4120----257777677877416873689997698353544120
Q ss_pred --HHHHHHHHHCEEEEEEECCCCCCHHH----HHHHHHHHHC--CCCEEEEEECCCCCCCC
Q ss_conf --99999874217899997687886478----9999999972--99789999754366740
Q gi|254780233|r 98 --EVERILCMVESVVVLVDAAEGPMPQT----KFVVGKALKI--GLRPIVVVNKVDRSDAR 150 (624)
Q Consensus 98 --EVer~l~~~DgaiLvVdA~eGv~~QT----~~vl~~A~~~--~l~~IvvINKiDr~~a~ 150 (624)
+.+.+++.+..-|.|+|+.......- +..+..|.+. +.+.-|+|.|||.-..+
T Consensus 67 ~~~~e~if~~v~~lIyV~D~q~~~~~~~l~~~~~~l~~~~~~sp~~~v~vfiHK~D~l~~d 127 (230)
T pfam04670 67 TRQKEHIFSNVGVLIYVFDVESREYEEDLATLVKIIEALYQYSPNAKVFVLIHKMDLLSED 127 (230)
T ss_pred CCCHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHH
T ss_conf 0223547644788999996888609999999999999999839998899999603588866
No 272
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.26 E-value=3.6e-06 Score=59.72 Aligned_cols=165 Identities=28% Similarity=0.339 Sum_probs=95.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCC----C--------EEC-CCCH---HHHHCCCEEEEEEEE--------
Q ss_conf 499985468987788999999839614232200----0--------003-8857---798709606467999--------
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVS----E--------RVM-DCND---LEKERGITILAKVTS-------- 76 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~----~--------~vm-D~~~---~EreRGITI~a~~~~-------- 76 (624)
-|+|-|--++|||||+|+|-..- +++.-.|. | .+| |..- +-..-|+=|-|..++
T Consensus 53 viGITG~PGaGKSTli~~L~~~l--~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS~ 130 (323)
T COG1703 53 VIGITGVPGAGKSTLIEALGREL--RERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLSR 130 (323)
T ss_pred EEEECCCCCCCHHHHHHHHHHHH--HHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCHHHHH
T ss_conf 78731799886688999999999--9779678999988999987853012076677644699817842687765101668
Q ss_pred --------EEECCEEEEEECCCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf --------998997999972898754079999998742178999976878864789999999972997899997543667
Q gi|254780233|r 77 --------IVWNDVRINIVDTPGHADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSD 148 (624)
Q Consensus 77 --------~~~~~~~iNiiDTPGH~DF~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~ 148 (624)
++--+|-+-||-|-|--- +||+ +.+|+|..++|.-.--|=..|.. |+--+.+-=|+||||.|+++
T Consensus 131 at~~~i~~ldAaG~DvIIVETVGvGQ--sev~-I~~~aDt~~~v~~pg~GD~~Q~i----K~GimEiaDi~vINKaD~~~ 203 (323)
T COG1703 131 ATREAIKLLDAAGYDVIIVETVGVGQ--SEVD-IANMADTFLVVMIPGAGDDLQGI----KAGIMEIADIIVINKADRKG 203 (323)
T ss_pred HHHHHHHHHHHCCCCEEEEEECCCCC--CHHH-HHHHCCEEEEEECCCCCCHHHHH----HHHHHHHHHEEEEECCCHHH
T ss_conf 89999999986189889998147884--1557-76521668999657888278888----74146540335672567265
Q ss_pred CCHHHHHHHHHHHHHHCCC----CHHHC-CHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 4025689999988862267----30110-42668878865916467422334864135553210245
Q gi|254780233|r 149 ARADEVINEVFDLFSALDA----TDAQL-DFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVP 210 (624)
Q Consensus 149 a~~~~v~~ei~dlf~~l~a----~de~l-d~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP 210 (624)
|.- ... +|+..|.- .++.. .-|++-+||..| +|+.+|+++|.+|.-
T Consensus 204 A~~--a~r---~l~~al~~~~~~~~~~~W~ppv~~t~A~~g-----------~Gi~~L~~ai~~h~~ 254 (323)
T COG1703 204 AEK--AAR---ELRSALDLLREVWRENGWRPPVVTTSALEG-----------EGIDELWDAIEDHRK 254 (323)
T ss_pred HHH--HHH---HHHHHHHHHCCCCCCCCCCCCEEEEEECCC-----------CCHHHHHHHHHHHHH
T ss_conf 899--999---999999751145423688886467641357-----------787999999999999
No 273
>pfam00735 Septin Septin. Members of this family include CDC3, CDC10, CDC11 and CDC12/Septin. Members of this family bind GTP. As regards the septins, these are polypeptides of 30-65kDa with three characteristic GTPase motifs (G-1, G-3 and G-4) that are similar to those of the Ras family. The G-4 motif is strictly conserved with a unique septin consensus of AKAD. Most septins are thought to have at least one coiled-coil region, which in some cases is necessary for intermolecular interactions that allow septins to polymerize to form rod-shaped complexes. In turn, these are arranged into tandem arrays to form filaments. They are multifunctional proteins, with roles in cytokinesis, sporulation, germ cell development, exocytosis and apoptosis.
Probab=98.23 E-value=6.7e-05 Score=51.37 Aligned_cols=119 Identities=20% Similarity=0.307 Sum_probs=72.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCE--EEEEECCCCCCCCHHH
Q ss_conf 49998546898778899999983961423220000038857798709606467999998997--9999728987540799
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDV--RINIVDTPGHADFGGE 98 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~--~iNiiDTPGH~DF~gE 98 (624)
||-++|--+.|||||+..|+- +-.+...... .......+...|.+....++-++. ++|+|||||..|....
T Consensus 6 nimvvG~sGlGKTTfiNtL~~-~~~~~~~~~~------~~~~~~~~t~~i~~~~~~iee~g~~l~LtiiDTpGfGd~i~n 78 (280)
T pfam00735 6 TLMVVGESGLGKTTLINTLFL-TDLYPERGIP------GPSEKIKKTVEIKATTVEIEEDGVKLNLTVIDTPGFGDAIDN 78 (280)
T ss_pred EEEEECCCCCCHHHHHHHHHC-CCCCCCCCCC------CCCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCCH
T ss_conf 999977999978999999857-8577866788------843355677534889999988998999999989984233451
Q ss_pred HHH--------------HHH---------H----HCEEEEEEECC-CCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 999--------------987---------4----21789999768-7886478999999997299789999754366
Q gi|254780233|r 99 VER--------------ILC---------M----VESVVVLVDAA-EGPMPQTKFVVGKALKIGLRPIVVVNKVDRS 147 (624)
Q Consensus 99 Ver--------------~l~---------~----~DgaiLvVdA~-eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~ 147 (624)
-.. .|. . ++++|..++.. .|..+---.+++ .+...+.+|.+|-|-|--
T Consensus 79 ~~~~~~I~~yI~~qf~~yl~eE~~i~R~~~~D~RVH~cLYFI~Ptgh~L~~lDi~~mk-~Ls~~vNvIPVIaKADtL 154 (280)
T pfam00735 79 SNCWKPIVEYIDEQFEQYLRDESRLNRTSIVDNRVHCCLYFISPTGHGLKPLDVEFMK-KLHEKVNIIPVIAKADTL 154 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHH-HHHCCCCEEEEEECCCCC
T ss_conf 6669999999999999999986475667778884379999756888888688999999-871446536666214558
No 274
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.20 E-value=1.5e-05 Score=55.73 Aligned_cols=165 Identities=18% Similarity=0.245 Sum_probs=87.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEE-EEEEEEEECC-EEEEEECCCCC--CCCH
Q ss_conf 499985468987788999999839614232200000388577987096064-6799999899-79999728987--5407
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITIL-AKVTSIVWND-VRINIVDTPGH--ADFG 96 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~-a~~~~~~~~~-~~iNiiDTPGH--~DF~ 96 (624)
||||.|-.++||||++.+|. |.-.+...+. .. |.+=. ...+.+.+.. -.+.+.|.||- ..|.
T Consensus 3 ~iaVtGesGaGKSSfINAlR---Gl~~~d~~aA----~t-------Gv~eTT~~~~~Y~~p~~pnv~lwDlPG~Gt~~f~ 68 (197)
T cd04104 3 NIAVTGESGAGKSSFINALR---GVGHEEEGAA----PT-------GVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFP 68 (197)
T ss_pred EEEEECCCCCCHHHHHHHHH---CCCCCCCCCC----CC-------CCCCCCCCCEECCCCCCCCCEEECCCCCCCCCCC
T ss_conf 79995589986899999986---8898877758----88-------8874677862047999998769728999987659
Q ss_pred HHHH---HHHHHHCEEEEEEECCCCCCHHHH-HHHHHHHHCCCCEEEEEECCCCCCC----------CHHHHHHHHHHHH
Q ss_conf 9999---998742178999976878864789-9999999729978999975436674----------0256899999888
Q gi|254780233|r 97 GEVE---RILCMVESVVVLVDAAEGPMPQTK-FVVGKALKIGLRPIVVVNKVDRSDA----------RADEVINEVFDLF 162 (624)
Q Consensus 97 gEVe---r~l~~~DgaiLvVdA~eGv~~QT~-~vl~~A~~~~l~~IvvINKiDr~~a----------~~~~v~~ei~dlf 162 (624)
-+-- --+...|.-|++.+ + -..++. ..++.+.++|.+..+|.||+|++=. +-+++++++.+-.
T Consensus 69 ~~~Yl~~~~~~~yD~fiiiss--~-rf~~nd~~la~~i~~~gK~fyfVRsK~D~dl~n~~~~~p~~f~~e~~L~~IR~~c 145 (197)
T cd04104 69 PDDYLEEMKFSEYDFFIIISS--T-RFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNC 145 (197)
T ss_pred HHHHHHHCCCCCCCEEEEEEC--C-CCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 899998658554578999838--8-6414269999999980992899986121400056637876659999999999999
Q ss_pred HHCCCCHHHCCH-HHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCCC
Q ss_conf 622673011042-66887886591646742233486413555321024542
Q gi|254780233|r 163 SALDATDAQLDF-PILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPP 212 (624)
Q Consensus 163 ~~l~a~de~ld~-Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~P 212 (624)
.+- ..++.+.- ||...|..+ ....+...|.+++...+|+-
T Consensus 146 ~~~-L~~~gv~~p~VFLvS~~~---------~~~yDFp~L~~tl~~~Lp~~ 186 (197)
T cd04104 146 LEN-LQEAGVSEPPVFLVSNFD---------PSDYDFPKLRETLLKDLPAH 186 (197)
T ss_pred HHH-HHHCCCCCCCEEEEECCC---------CCCCCHHHHHHHHHHHHHHH
T ss_conf 999-998699999989993798---------22077689999999980898
No 275
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.17 E-value=0.0001 Score=50.19 Aligned_cols=120 Identities=22% Similarity=0.337 Sum_probs=72.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCE--EEEEECCCCCCCCHHH
Q ss_conf 49998546898778899999983961423220000038857798709606467999998997--9999728987540799
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDV--RINIVDTPGHADFGGE 98 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~--~iNiiDTPGH~DF~gE 98 (624)
||-++|--+.||||++..|+- +-.+...... +......++...|.+...-++-++. ++|+|||||..|+..-
T Consensus 6 nimVvG~sGlGKsTfiNtLf~-~~~~~~~~~~-----~~~~~~~~~t~~i~~~~~~i~e~g~~l~LtviDTpGfGd~i~n 79 (276)
T cd01850 6 NIMVVGESGLGKSTFINTLFN-TKLIPSDYPP-----DPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINN 79 (276)
T ss_pred EEEEECCCCCCHHHHHHHHHC-CCCCCCCCCC-----CCHHHCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCCCCCH
T ss_conf 999976899988999999747-8577877778-----8132056888258999999963998999999976884122360
Q ss_pred ------H---------------H---HHHHH----HCEEEEEEECC-CCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf ------9---------------9---99874----21789999768-7886478999999997299789999754366
Q gi|254780233|r 99 ------V---------------E---RILCM----VESVVVLVDAA-EGPMPQTKFVVGKALKIGLRPIVVVNKVDRS 147 (624)
Q Consensus 99 ------V---------------e---r~l~~----~DgaiLvVdA~-eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~ 147 (624)
+ . |.-+. +.++|..++.. -|..+---.+ .+.+...+.+|.+|-|-|--
T Consensus 80 ~~~~~~I~~yI~~qf~~yl~eE~~i~R~~~~~D~RVH~cLYFI~Ptgh~L~~lDi~~-mk~Ls~~vNvIPVIaKADtl 156 (276)
T cd01850 80 SDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEF-MKRLSKRVNIIPVIAKADTL 156 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHH-HHHHCCCCCEEEEEECCCCC
T ss_conf 340999999999999999999853145788877744899999678888887999999-99962756456678516669
No 276
>KOG0090 consensus
Probab=98.14 E-value=7e-06 Score=57.80 Aligned_cols=135 Identities=21% Similarity=0.298 Sum_probs=84.5
Q ss_pred EEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEE
Q ss_conf 46531346802431499985468987788999999839614232200000388577987096064679999989979999
Q gi|254780233|r 7 LFFIYGRLGYMQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINI 86 (624)
Q Consensus 7 ~~~~~~~~~~~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNi 86 (624)
+|+..+....++=+-|-++|--|+|||+|-=+|.+.+. .+.+. +|.-....+.+++....+
T Consensus 26 ~~~~~~~~rrs~~~~Vll~Gl~dSGKT~LF~qL~~gs~----~~Tvt---------------Siepn~a~~r~gs~~~~L 86 (238)
T KOG0090 26 LFLKLKLFRRSKQNAVLLVGLSDSGKTSLFTQLITGSH----RGTVT---------------SIEPNEATYRLGSENVTL 86 (238)
T ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCEEEEEEHHCCCC----CCEEE---------------EECCCEEEEEECCCCEEE
T ss_conf 99999998632688689993278983355420013873----67032---------------104661357636862388
Q ss_pred ECCCCCCCCHHHHHHHHH---HHCEEEEEEECCCCCCHHH---HH---HHHHH--HHCCCCEEEEEECCCCCCCCHHHHH
Q ss_conf 728987540799999987---4217899997687886478---99---99999--9729978999975436674025689
Q gi|254780233|r 87 VDTPGHADFGGEVERILC---MVESVVVLVDAAEGPMPQT---KF---VVGKA--LKIGLRPIVVVNKVDRSDARADEVI 155 (624)
Q Consensus 87 iDTPGH~DF~gEVer~l~---~~DgaiLvVdA~eGv~~QT---~~---vl~~A--~~~~l~~IvvINKiDr~~a~~~~v~ 155 (624)
||-|||.--..-.+--+. -+-+.++|||+..=..--+ +| ++..+ +..+.|.+++-||-|.--|.+.+++
T Consensus 87 VD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~I 166 (238)
T KOG0090 87 VDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKI 166 (238)
T ss_pred EECCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHCCCHHHH
T ss_conf 75799588999999873465522159999833224600679999999999860123479988999555223213859999
Q ss_pred HHHHH
Q ss_conf 99998
Q gi|254780233|r 156 NEVFD 160 (624)
Q Consensus 156 ~ei~d 160 (624)
.+..+
T Consensus 167 r~~LE 171 (238)
T KOG0090 167 RQQLE 171 (238)
T ss_pred HHHHH
T ss_conf 99999
No 277
>KOG0092 consensus
Probab=98.12 E-value=1.1e-05 Score=56.54 Aligned_cols=163 Identities=18% Similarity=0.258 Sum_probs=96.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHH
Q ss_conf 49998546898778899999983961423220000038857798709606467999998997999972898754079999
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVE 100 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVe 100 (624)
-++++|-...|||||+.+.. .|.|.+... .-=|-.-+.+...+.=...++-|.||-|---|-+=.-
T Consensus 7 KvvLLG~~~VGKSSlV~Rfv--k~~F~e~~e------------~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slap 72 (200)
T KOG0092 7 KVVLLGDSGVGKSSLVLRFV--KDQFHENIE------------PTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAP 72 (200)
T ss_pred EEEEECCCCCCCHHHHHHHH--HCCCCCCCC------------CCCCEEEEEEEEEECCCEEEEEEEECCCCCCCCCCCC
T ss_conf 99998678777024112223--275663234------------5400078999998489578999987677300335561
Q ss_pred HHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCE----EEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHH
Q ss_conf 9987421789999768788647899999999729978----999975436674025689999988862267301104266
Q gi|254780233|r 101 RILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRP----IVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFPI 176 (624)
Q Consensus 101 r~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~----IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~Pv 176 (624)
==.|-++.||||-|.+.=--=++-.-|-+-+....++ .++=||+|..+.|-- -..+.++ |.+ + -.++.
T Consensus 73 MYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V-~~~ea~~-yAe----~--~gll~ 144 (200)
T KOG0092 73 MYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREV-EFEEAQA-YAE----S--QGLLF 144 (200)
T ss_pred CEECCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCCC-CHHHHHH-HHH----H--CCCEE
T ss_conf 01047767999985566789999999999998627987599983251654103454-6888898-998----5--49879
Q ss_pred HHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf 8878865916467422334864135553210245422332
Q gi|254780233|r 177 LYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPPVISE 216 (624)
Q Consensus 177 ~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~P~~~e 216 (624)
+.+||++| .++..+|.+|.+.+|.....+
T Consensus 145 ~ETSAKTg-----------~Nv~~if~~Ia~~lp~~~~~~ 173 (200)
T KOG0092 145 FETSAKTG-----------ENVNEIFQAIAEKLPCSDPQE 173 (200)
T ss_pred EEEECCCC-----------CCHHHHHHHHHHHCCCCCCCC
T ss_conf 99852556-----------589999999997566766223
No 278
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.06 E-value=8.4e-06 Score=57.30 Aligned_cols=134 Identities=28% Similarity=0.323 Sum_probs=79.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEE-EEEEEEECCEEEEEECCCCC----CCC
Q ss_conf 4999854689877889999998396142322000003885779870960646-79999989979999728987----540
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILA-KVTSIVWNDVRINIVDTPGH----ADF 95 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a-~~~~~~~~~~~iNiiDTPGH----~DF 95 (624)
-|+.||.++.|||||+-+|- |. -++. |.-+++|++.-. |||||- .-.
T Consensus 3 ri~~vG~~gcGKTtL~q~L~---G~-----------------------~~lykKTQAve~~d~~~--IDTPGEy~~~~~~ 54 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLY---GN-----------------------DTLYKKTQAVEFNDKGD--IDTPGEYFEHPRW 54 (148)
T ss_pred EEEEECCCCCCCHHHHHHHH---CC-----------------------HHHHCCCCEEECCCCCC--CCCCHHHHHHHHH
T ss_conf 06875145657316788861---60-----------------------33210000133047556--5880666524678
Q ss_pred HHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC-CCCHHHHHHHHHHHHHHCCCCHHHCCH
Q ss_conf 7999999874217899997687886478999999997299789999754366-740256899999888622673011042
Q gi|254780233|r 96 GGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRS-DARADEVINEVFDLFSALDATDAQLDF 174 (624)
Q Consensus 96 ~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~-~a~~~~v~~ei~dlf~~l~a~de~ld~ 174 (624)
.....-.+.=+|-.++|-.|.++- ++|--..+--...|.|-+|.|.|.+ ++|...+.. ++.+.||.
T Consensus 55 Y~aL~tt~~dadvi~~v~~and~~---s~f~p~f~~~~~k~vIgvVTK~DLaed~dI~~~~~----~L~eaGa~------ 121 (148)
T COG4917 55 YHALITTLQDADVIIYVHAANDPE---SRFPPGFLDIGVKKVIGVVTKADLAEDADISLVKR----WLREAGAE------ 121 (148)
T ss_pred HHHHHHHHHCCCEEEEEECCCCCC---CCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHH----HHHHCCCC------
T ss_conf 999988761133255430026844---44884213446665589986034664676899999----99974875------
Q ss_pred HHHHHHHHCCEECCCCCCCCCCCCHHHHHHHH
Q ss_conf 66887886591646742233486413555321
Q gi|254780233|r 175 PILYGSGRFGWMSDSSDGSRDQGMVPLLNLIV 206 (624)
Q Consensus 175 Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii 206 (624)
|+++.|+.+ +.|++.|++-+.
T Consensus 122 ~iF~~s~~d-----------~~gv~~l~~~L~ 142 (148)
T COG4917 122 PIFETSAVD-----------NQGVEELVDYLA 142 (148)
T ss_pred CEEEEECCC-----------CCCHHHHHHHHH
T ss_conf 268872558-----------311999999997
No 279
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.05 E-value=2.4e-05 Score=54.36 Aligned_cols=96 Identities=21% Similarity=0.288 Sum_probs=68.4
Q ss_pred CHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCH
Q ss_conf 07999999874217899997687886478999999997299789999754366740256899999888622673011042
Q gi|254780233|r 95 FGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDF 174 (624)
Q Consensus 95 F~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~ 174 (624)
|--.+.+++..+|.+|.||||..+..+.-..+.+.....+.|.++++||+|.-. .+..++....|... .+
T Consensus 2 ~rr~i~~~i~~~D~il~VvDar~p~~~~~~~l~~~l~~~~K~~ilvlNK~Dl~~---~~~~~~~~~~~~~~-------g~ 71 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVP---KEVLEKWKSIKESE-------GI 71 (156)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCC---HHHHHHHHHHHHCC-------CC
T ss_conf 789999999879999999987889998698999999756993999977555589---89999999998289-------99
Q ss_pred HHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf 6688788659164674223348641355532102454
Q gi|254780233|r 175 PILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPP 211 (624)
Q Consensus 175 Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~ 211 (624)
|+++.||.++ .|+..|.+.|.+..+.
T Consensus 72 ~~i~iSa~~~-----------~g~~~L~~~i~~~~~~ 97 (156)
T cd01859 72 PVVYVSAKER-----------LGTKILRRTIKELAKI 97 (156)
T ss_pred CEEEEECCCC-----------CCHHHHHHHHHHHHCC
T ss_conf 7378701267-----------5799999999986023
No 280
>PRK13768 GTPase; Provisional
Probab=98.03 E-value=4.9e-05 Score=52.28 Aligned_cols=128 Identities=24% Similarity=0.301 Sum_probs=66.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCC--EEC---------------CCCHHHHHCCCE-----EEEE---EEE
Q ss_conf 999854689877889999998396142322000--003---------------885779870960-----6467---999
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSE--RVM---------------DCNDLEKERGIT-----ILAK---VTS 76 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~--~vm---------------D~~~~EreRGIT-----I~a~---~~~ 76 (624)
+-++|--++||||++.+|-.......+.-.+-+ -.- +..+.=+|-|.- |.+- .+.
T Consensus 5 ~~ViGpaGSGKsT~~~~l~~~l~~~~r~~~vvNLDPA~e~~pY~~~iDIRd~i~~~dVM~~~~LGPNGali~~~e~l~~~ 84 (253)
T PRK13768 5 VFFLGTAGSGKTTLVGALSDWLEEQGYDVAIVNLDPAVEYLPYKPDIDVREYVSAREIMRKYGLGPNGALIASVDLLLTK 84 (253)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 99989999988999999999999769975999789866589999886378617899999881989646899999999998
Q ss_pred EEE-------CCEEEEEECCCCCC------CCHHHHHHHHHH--HCEEEEEEECCCCCCHHHH-----HHHHHHHHCCCC
Q ss_conf 998-------99799997289875------407999999874--2178999976878864789-----999999972997
Q gi|254780233|r 77 IVW-------NDVRINIVDTPGHA------DFGGEVERILCM--VESVVVLVDAAEGPMPQTK-----FVVGKALKIGLR 136 (624)
Q Consensus 77 ~~~-------~~~~iNiiDTPGH~------DF~gEVer~l~~--~DgaiLvVdA~eGv~~QT~-----~vl~~A~~~~l~ 136 (624)
+.| .+..+-|+||||-. +.+-..-+.|.- =-.++.++|+.-=..|.+- ..+.--++.++|
T Consensus 85 ~d~l~~~i~~~~~dY~i~D~PGQiElft~~~~~~~i~~~L~~~~~~~~v~l~D~~~~~~~~~fiS~~L~a~s~m~~l~lP 164 (253)
T PRK13768 85 AEEIKEEIERLDADYVLVDTPGQMELFAFRESGRYLVEKLSSGSKSLSVYLIDAVLAKDPSDFVSLLLLALSVQLRLGLP 164 (253)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCEEEEECCHHHHHHHHHHHCCCCEEEEEEECHHHHCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999998515887599826874432223407999999986368628999845056378879999999999999973999
Q ss_pred EEEEEECCCCCCC
Q ss_conf 8999975436674
Q gi|254780233|r 137 PIVVVNKVDRSDA 149 (624)
Q Consensus 137 ~IvvINKiDr~~a 149 (624)
.|.++||+|.-..
T Consensus 165 ~inVlsK~Dll~~ 177 (253)
T PRK13768 165 QIPVLNKIDLLSE 177 (253)
T ss_pred EEEEEEHHHCCCH
T ss_conf 7998676862783
No 281
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.95 E-value=0.00019 Score=48.47 Aligned_cols=103 Identities=23% Similarity=0.402 Sum_probs=77.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCC-CEEEEEEEEEEECCEEEEEECCCCCCCCHHHHH
Q ss_conf 9998546898778899999983961423220000038857798709-606467999998997999972898754079999
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERG-ITILAKVTSIVWNDVRINIVDTPGHADFGGEVE 100 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRG-ITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVe 100 (624)
+|++|--+.|||||+-.|.+.--- .... .-|| ||+ +.-+..+|+++.+| .|...-+.
T Consensus 72 vavvGPpGtGKsTLirSlVrr~tk----~ti~----------~i~GPiTv------vsgK~RRiTflEcp--~Dl~~miD 129 (1077)
T COG5192 72 VAVVGPPGTGKSTLIRSLVRRFTK----QTID----------EIRGPITV------VSGKTRRITFLECP--SDLHQMID 129 (1077)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH----HHHH----------CCCCCEEE------EECCEEEEEEEECH--HHHHHHHH
T ss_conf 996369988746899999999877----5420----------36786478------61563578988671--78888876
Q ss_pred HHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEE-EEECCCCC
Q ss_conf 998742178999976878864789999999972997899-99754366
Q gi|254780233|r 101 RILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIV-VVNKVDRS 147 (624)
Q Consensus 101 r~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~Iv-vINKiDr~ 147 (624)
+...+|-+||++|+.-|-+-.|-.-|..+...|+|++. |++.+|.-
T Consensus 130 -vaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlf 176 (1077)
T COG5192 130 -VAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLF 176 (1077)
T ss_pred -HHHHHHEEEEEECCCCCCEEHHHHHHHHHHHCCCCCEEEEEEECCCC
T ss_conf -88752135788636667042488999998664897247888621133
No 282
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=97.86 E-value=7.3e-05 Score=51.12 Aligned_cols=154 Identities=21% Similarity=0.299 Sum_probs=85.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCC-CEECCCCH--HHHHCCCEEEEEEEE-----------------EE
Q ss_conf 31499985468987788999999839614232200-00038857--798709606467999-----------------99
Q gi|254780233|r 19 IRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVS-ERVMDCND--LEKERGITILAKVTS-----------------IV 78 (624)
Q Consensus 19 IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~-~~vmD~~~--~EreRGITI~a~~~~-----------------~~ 78 (624)
++-|.+.|-+++|||||.+++++.-+---...-+. |-+...++ +.+.-|+-|..-+|. ..
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~ 92 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL 92 (202)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHCCEEEEECEEECHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHH
T ss_conf 48999617998678999999999997527768996404006559999737798068740387658867889999999863
Q ss_pred E-CCEEEEEECCCCC--CCCHHHHHHHHHHHC-EEEEEEECCCCCCHHHHHHHHHHHHCCC-----CEEEEEECCCCC--
Q ss_conf 8-9979999728987--540799999987421-7899997687886478999999997299-----789999754366--
Q gi|254780233|r 79 W-NDVRINIVDTPGH--ADFGGEVERILCMVE-SVVVLVDAAEGPMPQTKFVVGKALKIGL-----RPIVVVNKVDRS-- 147 (624)
Q Consensus 79 ~-~~~~iNiiDTPGH--~DF~gEVer~l~~~D-gaiLvVdA~eGv~~QT~~vl~~A~~~~l-----~~IvvINKiDr~-- 147 (624)
| .+.-+=||-+=|- .-| +....| ..+.|+|.++|...- +| +- .=+++|||.|.-
T Consensus 93 ~~~~~Dll~iEs~GNL~~~~------sp~L~d~~~v~VidvteGe~~P-----~K----~gP~i~~aDllVInK~DLa~~ 157 (202)
T COG0378 93 DFPDLDLLFIESVGNLVCPF------SPDLGDHLRVVVIDVTEGEDIP-----RK----GGPGIFKADLLVINKTDLAPY 157 (202)
T ss_pred CCCCCCEEEEECCCCEECCC------CCCHHHCEEEEEEECCCCCCCC-----CC----CCCCEEEEEEEEEEHHHHHHH
T ss_conf 17767789992376432446------8041304699999878888876-----55----799646741899856773877
Q ss_pred -CCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHC
Q ss_conf -740256899999888622673011042668878865916467422334864135553210
Q gi|254780233|r 148 -DARADEVINEVFDLFSALDATDAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVD 207 (624)
Q Consensus 148 -~a~~~~v~~ei~dlf~~l~a~de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~ 207 (624)
+++.+.....+.. +. -+.|+++.|+++| +|++.+++.|..
T Consensus 158 v~~dlevm~~da~~----~n-----p~~~ii~~n~ktg-----------~G~~~~~~~i~~ 198 (202)
T COG0378 158 VGADLEVMARDAKE----VN-----PEAPIIFTNLKTG-----------EGLDEWLRFIEP 198 (202)
T ss_pred HCCCHHHHHHHHHH----HC-----CCCCEEEEECCCC-----------CCHHHHHHHHHH
T ss_conf 28669999999998----49-----9998899847878-----------689999999876
No 283
>KOG0078 consensus
Probab=97.84 E-value=0.00047 Score=45.84 Aligned_cols=144 Identities=17% Similarity=0.148 Sum_probs=86.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECC--EEEEEECCCCCCCC
Q ss_conf 4314999854689877889999998396142322000003885779870960646799999899--79999728987540
Q gi|254780233|r 18 QIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWND--VRINIVDTPGHADF 95 (624)
Q Consensus 18 ~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~--~~iNiiDTPGH~DF 95 (624)
.+=-|.+||-.+.|||.+..+....+=...-.... ||- -+...+.-++ .++-|.||-|---|
T Consensus 11 ~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTi--------------GID--Fk~kti~l~g~~i~lQiWDtaGQerf 74 (207)
T KOG0078 11 YLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTI--------------GID--FKIKTIELDGKKIKLQIWDTAGQERF 74 (207)
T ss_pred EEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEE--------------EEE--EEEEEEEECCEEEEEEEEECCCCHHH
T ss_conf 18999997789876557666544066767765158--------------788--78889983890899999972430567
Q ss_pred HHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 7999999874217899997687886478999999997----299789999754366740256899999888622673011
Q gi|254780233|r 96 GGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALK----IGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQ 171 (624)
Q Consensus 96 ~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~----~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ 171 (624)
.--...-.+-++|++||+|-..-.--.--+-|.+-.+ .+++.+++=||+|.+..|.-. .++-.-|-.+
T Consensus 75 ~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~-~e~ge~lA~e------- 146 (207)
T KOG0078 75 RTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVS-KERGEALARE------- 146 (207)
T ss_pred HHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCC-HHHHHHHHHH-------
T ss_conf 88999998654824999984525777779999999986378887489851141210133356-7999999998-------
Q ss_pred CCHHHHHHHHHCCE
Q ss_conf 04266887886591
Q gi|254780233|r 172 LDFPILYGSGRFGW 185 (624)
Q Consensus 172 ld~Pv~~~Sa~~G~ 185 (624)
+.++.+++||+.|.
T Consensus 147 ~G~~F~EtSAk~~~ 160 (207)
T KOG0078 147 YGIKFFETSAKTNF 160 (207)
T ss_pred HCCEEEECCCCCCC
T ss_conf 49827971336799
No 284
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=97.79 E-value=0.00033 Score=46.83 Aligned_cols=167 Identities=19% Similarity=0.132 Sum_probs=82.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCC---EE--CCCCHHHHHCCCEEEEE-EEEEEECCEEEEEECCCCCCC
Q ss_conf 4999854689877889999998396142322000---00--38857798709606467-999998997999972898754
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSE---RV--MDCNDLEKERGITILAK-VTSIVWNDVRINIVDTPGHAD 94 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~---~v--mD~~~~EreRGITI~a~-~~~~~~~~~~iNiiDTPGH~D 94 (624)
-|.++|-.+-|||+|+=+.... ..+.+...... ++ .|..... ...+.. ..-+.=+..++.|.||.|..+
T Consensus 4 KiVlvGDs~VGKTsLl~~~~~n-~~~~~~~~~~~~~pTv~~~~~~~~~----~~~~~~~~~~vdg~~v~L~iWDTAG~~~ 78 (195)
T cd01873 4 KCVVVGDNAVGKTRLICARACN-KTLTQYQLLATHVPTVWAIDQYRVC----QEVLERSRDVVDGVSVSLRLWDTFGDHD 78 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHC-CCCCCCCCCCCCCCCCCCCCCCEEE----EEECCCCEEEECCEEEEEEEEECCCCHH
T ss_conf 9999878998989999778747-8765565666758866333331344----4430221142189599999997899620
Q ss_pred CHHHHHHHH--HHHCEEEEEEECCCCCC-HHHHHHHHHHHH---CCCCEEEEEECCCCCCCCHHHHHHHHHHH-------
Q ss_conf 079999998--74217899997687886-478999999997---29978999975436674025689999988-------
Q gi|254780233|r 95 FGGEVERIL--CMVESVVVLVDAAEGPM-PQTKFVVGKALK---IGLRPIVVVNKVDRSDARADEVINEVFDL------- 161 (624)
Q Consensus 95 F~gEVer~l--~~~DgaiLvVdA~eGv~-~QT~~vl~~A~~---~~l~~IvvINKiDr~~a~~~~v~~ei~dl------- 161 (624)
+ .|.+ +-+|+++|+.|-.+=-- ......|..-++ -++|+|++-||+|.-..+.++.-..-..+
T Consensus 79 ~----~r~~~y~~~~~~ll~fdv~~~~Sf~~v~~~W~~ei~~~~~~~piiLVG~K~DLr~~~~~~~~~~~~~~~~~~~~~ 154 (195)
T cd01873 79 K----DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNA 154 (195)
T ss_pred H----CCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHCCCCCHHHHHHHHCCCCCCCCC
T ss_conf 0----121435688899999966980148999999999999868999889996375754463024555430013655435
Q ss_pred ----HHHCCCCHHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHC
Q ss_conf ----8622673011042668878865916467422334864135553210
Q gi|254780233|r 162 ----FSALDATDAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVD 207 (624)
Q Consensus 162 ----f~~l~a~de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~ 207 (624)
+.+..+-..++.++.+.+||++| .|+..+||..+.
T Consensus 155 ~~v~~ee~~~~A~~~g~~y~EtSAkt~-----------~gV~e~F~~air 193 (195)
T cd01873 155 DILPPETGRAVAKELGIPYYETSVVTQ-----------FGVKDVFDNAIR 193 (195)
T ss_pred CCCCHHHHHHHHHHHCCEEEECCCCCC-----------CCHHHHHHHHHH
T ss_conf 767899999999982998998284879-----------897999999998
No 285
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=97.78 E-value=5e-05 Score=52.21 Aligned_cols=81 Identities=19% Similarity=0.233 Sum_probs=59.2
Q ss_pred HCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECC-CCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCC--CCCC-
Q ss_conf 0011110136777349999960780515988999605-78501211455301103665344411254554322--2233-
Q gi|254780233|r 220 KMIGTILEKDPFLGRIVTGRIHSGTIKSNQNIKALSP-DGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSI--AGLV- 295 (624)
Q Consensus 220 ~~~V~~i~~d~y~Gria~gRV~sGtlk~Gd~V~vl~~-~g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIvaI--aGl~- 295 (624)
+|+|..+..=+.+|.+.+|++.+|+++.||++.+... +|+- ...+|..|..+ +.++++|.|||.+++ .|++
T Consensus 2 ~~~ID~vf~v~G~GtVVtGtv~~G~i~~gd~v~i~P~~~G~f-~~v~VrsIq~~----~~~v~~a~aG~~~~~~l~~i~~ 76 (87)
T cd03694 2 EFQIDEIYSVPGVGTVVGGTVSKGVIRLGDTLLLGPDQDGSF-RPVTVKSIHRN----RSPVRVVRAGQSASLALKKIDR 76 (87)
T ss_pred CCCCEEEEECCCEEEEEEEEECCCCCCCCCEEEEECCCCCCE-EEEEEEEEEEC----CCCCCEECCCCEEEEEECCCCH
T ss_conf 565313798698568989998457153899999921678966-77899889988----8297897699898899869999
Q ss_pred -CCCCCCEECC
Q ss_conf -2101221105
Q gi|254780233|r 296 -KATVADTFCD 305 (624)
Q Consensus 296 -~~~iGDTL~~ 305 (624)
+++-|+.|.+
T Consensus 77 ~~i~rG~VL~s 87 (87)
T cd03694 77 SLLRKGMVLVS 87 (87)
T ss_pred HHCCCCCEEEC
T ss_conf 99067669969
No 286
>KOG0076 consensus
Probab=97.77 E-value=0.00026 Score=47.48 Aligned_cols=148 Identities=21% Similarity=0.228 Sum_probs=90.0
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHH-HCCCCCCCCCCCCEECCCCHHHHHCCCE--EEEEEEEEEECCEEEEEECCC
Q ss_conf 6802431499985468987788999999-8396142322000003885779870960--646799999899799997289
Q gi|254780233|r 14 LGYMQIRNIAIIAHVDHGKTTLVDELLK-QSGVFRDNQRVSERVMDCNDLEKERGIT--ILAKVTSIVWNDVRINIVDTP 90 (624)
Q Consensus 14 ~~~~~IRNiaIiaHvDhGKTTL~d~LL~-~sG~~~~~~~v~~~vmD~~~~EreRGIT--I~a~~~~~~~~~~~iNiiDTP 90 (624)
|....==++.|+|---+||||+.+++-. .++.+... | .+ -|| ..-.+-.+.-.+..++++|-=
T Consensus 12 ~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l--------~---~~---ki~~tvgLnig~i~v~~~~l~fwdlg 77 (197)
T KOG0076 12 MFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGL--------N---PS---KITPTVGLNIGTIEVCNAPLSFWDLG 77 (197)
T ss_pred HHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHCCC--------C---HH---HEECCCCEEECCEEECCCEEEEEECC
T ss_conf 7503203100242445785208988777887651688--------8---88---81012240313164125416778867
Q ss_pred CCCCCHHHHHHHH-----HHHCEEEEEEECCCCC-CH----HHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 8754079999998-----7421789999768788-64----789999999972997899997543667402568999998
Q gi|254780233|r 91 GHADFGGEVERIL-----CMVESVVVLVDAAEGP-MP----QTKFVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFD 160 (624)
Q Consensus 91 GH~DF~gEVer~l-----~~~DgaiLvVdA~eGv-~~----QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~d 160 (624)
|.. --|++ .-+-+.+.+|||..-- ++ +-+.+...-...|.|+++..||-|++++--..=++.+++
T Consensus 78 GQe-----~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~ 152 (197)
T KOG0076 78 GQE-----SLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFG 152 (197)
T ss_pred CHH-----HHHHHHHHHHHHHCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 808-----789999999997263477641777788888799999999878762871543400433030566898987742
Q ss_pred HHHHCCCCHHHCCHHHHHHHHHCC
Q ss_conf 886226730110426688788659
Q gi|254780233|r 161 LFSALDATDAQLDFPILYGSGRFG 184 (624)
Q Consensus 161 lf~~l~a~de~ld~Pv~~~Sa~~G 184 (624)
+ .+ .+..-|.|+.++||..|
T Consensus 153 ~-~e---~~~~rd~~~~pvSal~g 172 (197)
T KOG0076 153 L-AE---LIPRRDNPFQPVSALTG 172 (197)
T ss_pred H-HH---HCCCCCCCCCCCHHHHC
T ss_conf 6-65---36886576442145405
No 287
>KOG0070 consensus
Probab=97.75 E-value=7.9e-05 Score=50.92 Aligned_cols=158 Identities=18% Similarity=0.230 Sum_probs=90.0
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCC
Q ss_conf 80243149998546898778899999983961423220000038857798709606467999998997999972898754
Q gi|254780233|r 15 GYMQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHAD 94 (624)
Q Consensus 15 ~~~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~D 94 (624)
..++ ..|.++|=-.+||||+.=.|- .+++-.+ ==||-...-.++|++.++++.|.=|..-
T Consensus 14 ~~~e-~~IlmvGLD~AGKTTILyklk--------~~E~vtt-----------vPTiGfnVE~v~ykn~~f~vWDvGGq~k 73 (181)
T KOG0070 14 GKKE-MRILMVGLDAAGKTTILYKLK--------LGEIVTT-----------VPTIGFNVETVEYKNISFTVWDVGGQEK 73 (181)
T ss_pred CCCE-EEEEEEECCCCCCCEEEEECC--------CCCCCCC-----------CCCCCCCEEEEEECCEEEEEEECCCCCC
T ss_conf 8646-799999616898601567502--------5874147-----------7864531369998661899981588735
Q ss_pred CHHHHHHHHHHHCEEEEEEECCCCCC-HHHHHHHHHHH----HCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCH
Q ss_conf 07999999874217899997687886-47899999999----72997899997543667402568999998886226730
Q gi|254780233|r 95 FGGEVERILCMVESVVVLVDAAEGPM-PQTKFVVGKAL----KIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATD 169 (624)
Q Consensus 95 F~gEVer~l~~~DgaiLvVdA~eGv~-~QT~~vl~~A~----~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~d 169 (624)
+.-==.--.+-.+|.|+|||+.+=-. +-.+.-+..-+ -.+.|.+|+-||.|.++|-...-+.+.+.|. .+....
T Consensus 74 ~R~lW~~Y~~nt~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~-~l~~~~ 152 (181)
T KOG0070 74 LRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLH-SLRSRN 152 (181)
T ss_pred CCCCHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECHHHCCCCCCHHHHHHHHHHH-CCCCCC
T ss_conf 4531353203772799998177388899999999999768344773699984212042457888988674330-146887
Q ss_pred HHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 110426688788659164674223348641355532102
Q gi|254780233|r 170 AQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDH 208 (624)
Q Consensus 170 e~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~ 208 (624)
.-+-.++|..| .|+..-+|.+.+.
T Consensus 153 ----w~iq~~~a~~G-----------~GL~egl~wl~~~ 176 (181)
T KOG0070 153 ----WHIQSTCAISG-----------EGLYEGLDWLSNN 176 (181)
T ss_pred ----CEEEEECCCCC-----------CCHHHHHHHHHHH
T ss_conf ----28953013565-----------4489999999998
No 288
>pfam04548 AIG1 AIG1 family. Arabidopsis protein AIG1 appears to be involved in plant resistance to bacteria.
Probab=97.74 E-value=0.0012 Score=43.15 Aligned_cols=111 Identities=23% Similarity=0.425 Sum_probs=65.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCC-----
Q ss_conf 499985468987788999999839614232200000388577987096064679999989979999728987540-----
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADF----- 95 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF----- 95 (624)
+|.++|-.++|||+....+|-.. +|..... ...+|-.....+-.|++.++++|||||-.|.
T Consensus 2 rivLlGktG~GKSstgNtILG~~-~F~s~~~-------------~~~vT~~c~~~~~~~~gr~v~ViDTPgl~~~~~~~~ 67 (200)
T pfam04548 2 RIVLVGKTGNGKSATGNSILGRK-AFESKLR-------------AQGVTKTCQLVSRTWDGRIINVIDTPGLFDLSVSND 67 (200)
T ss_pred EEEEECCCCCCHHHHHHHHCCCC-CCCCCCC-------------CCCCCEEEEEEEEEECCEEEEEEECCCCCCCCCCHH
T ss_conf 89997999984365576617975-3357898-------------888741368999998996899997866357677869
Q ss_pred --HHHHHHHHHHH----CEEEEEEECCCCCCHHH-HHHHHH---HHHCC--CCEEEEEECCCCC
Q ss_conf --79999998742----17899997687886478-999999---99729--9789999754366
Q gi|254780233|r 96 --GGEVERILCMV----ESVVVLVDAAEGPMPQT-KFVVGK---ALKIG--LRPIVVVNKVDRS 147 (624)
Q Consensus 96 --~gEVer~l~~~----DgaiLvVdA~eGv~~QT-~~vl~~---A~~~~--l~~IvvINKiDr~ 147 (624)
.-|+.|.+.++ +..|||++. |-..+- +.+++. .+-.+ --.||+.+.-|.-
T Consensus 68 ~~~~ei~~~~~l~~pGpHa~LLVi~~--~rfT~ee~~~v~~i~~~FGe~~~~~tIVLFT~~D~L 129 (200)
T pfam04548 68 FISKEIIRCLLLAEPGPHAVLLVLSL--GRFTEEEEQALRTLQELFGSKILDYMIVVFTRKDDL 129 (200)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEEEC--CCCCHHHHHHHHHHHHHHHHHHHHHEEEEEECHHHC
T ss_conf 99999999998558998579999866--888889999999999997578680099999780214
No 289
>KOG1707 consensus
Probab=97.73 E-value=0.00055 Score=45.39 Aligned_cols=146 Identities=23% Similarity=0.230 Sum_probs=86.1
Q ss_pred CCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCC
Q ss_conf 34680243149998546898778899999983961423220000038857798709606467999998997999972898
Q gi|254780233|r 12 GRLGYMQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPG 91 (624)
Q Consensus 12 ~~~~~~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPG 91 (624)
-.++...+| |+++|--+.|||+|+=+|+...=. ..|. +++| -|||=+..++ ...-..|+||+-
T Consensus 3 ~~~t~kdVR-IvliGD~G~GKtSLImSL~~eef~----~~VP-~rl~--------~i~IPadvtP---e~vpt~ivD~ss 65 (625)
T KOG1707 3 DDETLKDVR-IVLIGDEGVGKTSLIMSLLEEEFV----DAVP-RRLP--------RILIPADVTP---ENVPTSIVDTSS 65 (625)
T ss_pred CCCCCCCEE-EEEECCCCCCHHHHHHHHHHHHCC----CCCC-CCCC--------CCCCCCCCCC---CCCCEEEEECCC
T ss_conf 756755259-999778886689999998763354----5345-5577--------6115875676---767218874366
Q ss_pred CCCCHHHHHHHHHHHCEEEEEEECC-----CCCCHHHHHHHH---HHHH---CCCCEEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 7540799999987421789999768-----788647899999---9997---2997899997543667402568999998
Q gi|254780233|r 92 HADFGGEVERILCMVESVVVLVDAA-----EGPMPQTKFVVG---KALK---IGLRPIVVVNKVDRSDARADEVINEVFD 160 (624)
Q Consensus 92 H~DF~gEVer~l~~~DgaiLvVdA~-----eGv~~QT~~vl~---~A~~---~~l~~IvvINKiDr~~a~~~~v~~ei~d 160 (624)
-.|=-..+..-++-+|.++++-+.. +|+ ||+ |- ..+. ..+|+|+|=||.|.-...-..+..++..
T Consensus 66 ~~~~~~~l~~EirkA~vi~lvyavd~~~T~D~i--st~--WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~p 141 (625)
T KOG1707 66 DSDDRLCLRKEIRKADVICLVYAVDDESTVDRI--STK--WLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLP 141 (625)
T ss_pred CCCHHHHHHHHHHHCCEEEEEEECCCHHHHHHH--HHH--HHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHH
T ss_conf 642568899998645889999853876876544--432--2365644157776687799830357755455641577789
Q ss_pred HHHHCCCCHHHCCHHHHHHHHHC
Q ss_conf 88622673011042668878865
Q gi|254780233|r 161 LFSALDATDAQLDFPILYGSGRF 183 (624)
Q Consensus 161 lf~~l~a~de~ld~Pv~~~Sa~~ 183 (624)
++.+..+-| ..+-+||+.
T Consensus 142 im~~f~EiE-----tciecSA~~ 159 (625)
T KOG1707 142 IMIAFAEIE-----TCIECSALT 159 (625)
T ss_pred HHHHHHHHH-----HHHHHHHHH
T ss_conf 998757777-----887654654
No 290
>KOG0084 consensus
Probab=97.72 E-value=0.00056 Score=45.31 Aligned_cols=148 Identities=18% Similarity=0.282 Sum_probs=90.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHH
Q ss_conf 49998546898778899999983961423220000038857798709606467999998997999972898754079999
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVE 100 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVe 100 (624)
-|-|||-.+-|||-|+-+. ..|++.+..... =|+-...+...++-+..|+.|.||-|..-|-..+.
T Consensus 11 KiiliGds~VGKtCL~~Rf--~~~~f~e~~~sT------------IGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~ 76 (205)
T KOG0084 11 KIILIGDSGVGKTCLLLRF--KDDTFTESYIST------------IGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITS 76 (205)
T ss_pred EEEEECCCCCCHHHHHHHH--CCCCCCHHHCCE------------EEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHH
T ss_conf 9999877896763555666--269853332323------------12678898755526488887666365377755547
Q ss_pred HHHHHHCEEEEEEECCCCCCHHHHH----HHHHHH----HCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHC
Q ss_conf 9987421789999768788647899----999999----72997899997543667402568999998886226730110
Q gi|254780233|r 101 RILCMVESVVVLVDAAEGPMPQTKF----VVGKAL----KIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQL 172 (624)
Q Consensus 101 r~l~~~DgaiLvVdA~eGv~~QT~~----vl~~A~----~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~l 172 (624)
.--+-+.|+|+|-|-+. |.-| .|-+-. ..+++++++=||.|..+++.-. .++.++ |. +.+
T Consensus 77 syYR~ahGii~vyDiT~----~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~-~~~a~~-fa------~~~ 144 (205)
T KOG0084 77 SYYRGAHGIIFVYDITK----QESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVS-TEEAQE-FA------DEL 144 (205)
T ss_pred HHCCCCCEEEEEEECCC----HHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHCCCC-HHHHHH-HH------HHC
T ss_conf 66167875999997655----7776548899998665246778768886245518640017-999999-98------642
Q ss_pred CHH-HHHHHHHCCEECCCCCCCCCCCCHHHHHHH
Q ss_conf 426-688788659164674223348641355532
Q gi|254780233|r 173 DFP-ILYGSGRFGWMSDSSDGSRDQGMVPLLNLI 205 (624)
Q Consensus 173 d~P-v~~~Sa~~G~~~~~~~~~~~~gl~~Lld~I 205 (624)
+.| .+..||+++ .+++..|..+
T Consensus 145 ~~~~f~ETSAK~~-----------~NVe~~F~~l 167 (205)
T KOG0084 145 GIPIFLETSAKDS-----------TNVEDAFLTL 167 (205)
T ss_pred CCCCEEECCCCCC-----------CCHHHHHHHH
T ss_conf 9830355046875-----------4799999999
No 291
>KOG0080 consensus
Probab=97.72 E-value=0.00029 Score=47.17 Aligned_cols=154 Identities=19% Similarity=0.275 Sum_probs=90.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHH
Q ss_conf 49998546898778899999983961423220000038857798709606467999998997999972898754079999
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVE 100 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVe 100 (624)
-|-|||..+-||++|.=+. .+.+|.....+. =|+--+.|..++.-+.+|+.|.||-|..-|-.-..
T Consensus 13 KiLlIGeSGVGKSSLllrF--v~~~fd~~~~~t------------IGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTp 78 (209)
T KOG0080 13 KILLIGESGVGKSSLLLRF--VSNTFDDLHPTT------------IGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTP 78 (209)
T ss_pred EEEEECCCCCCHHHHHHHH--HHCCCCCCCCCE------------EEEEEEEEEEEECCCEEEEEEEECCCHHHHHCCCH
T ss_conf 9999816876578999998--764367667734------------43457889998758267899874345276611687
Q ss_pred HHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHC-----CCCEEEEEECCCCCCCCHHHHHHHHHHH-HHHCCCCHHHCCH
Q ss_conf 998742178999976878864789999999972-----9978999975436674025689999988-8622673011042
Q gi|254780233|r 101 RILCMVESVVVLVDAAEGPMPQTKFVVGKALKI-----GLRPIVVVNKVDRSDARADEVINEVFDL-FSALDATDAQLDF 174 (624)
Q Consensus 101 r~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~-----~l~~IvvINKiDr~~a~~~~v~~ei~dl-f~~l~a~de~ld~ 174 (624)
.--+-+.|+|||-|.+.------.-+|.+-++. ++-.++|-||+|++..| +++.-.-+ |. ..-.-|
T Consensus 79 SyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R---~V~reEG~kfA---r~h~~L-- 150 (209)
T KOG0080 79 SYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESER---VVDREEGLKFA---RKHRCL-- 150 (209)
T ss_pred HHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCHHCC---CCCHHHHHHHH---HHHCCE--
T ss_conf 6745575069999712235677599999988764488137676542544501202---13488878999---860827--
Q ss_pred HHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 6688788659164674223348641355532102
Q gi|254780233|r 175 PILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDH 208 (624)
Q Consensus 175 Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~ 208 (624)
.+.+||+. ..+++..|+.+++.
T Consensus 151 -FiE~SAkt-----------~~~V~~~FeelveK 172 (209)
T KOG0080 151 -FIECSAKT-----------RENVQCCFEELVEK 172 (209)
T ss_pred -EEECCHHH-----------HCCHHHHHHHHHHH
T ss_conf -89825434-----------30188899999999
No 292
>KOG0098 consensus
Probab=97.68 E-value=0.00076 Score=44.45 Aligned_cols=149 Identities=17% Similarity=0.192 Sum_probs=89.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHH
Q ss_conf 49998546898778899999983961423220000038857798709606467999998997999972898754079999
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVE 100 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVe 100 (624)
-+-|||--+-||+.|.-+. +. ++-..+.+.. =||---+...++.-+..|++|.||-||.-|-.=+.
T Consensus 8 KyIiiGd~gVGKSclllrf---~~--krF~~~hd~T---------iGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~ 73 (216)
T KOG0098 8 KYIIIGDTGVGKSCLLLRF---TD--KRFQPVHDLT---------IGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTR 73 (216)
T ss_pred EEEEECCCCCCHHHHHHHH---HC--CCCCCCCCCE---------EEEEECEEEEEECCCEEEEEEEECCCCHHHHHHHH
T ss_conf 8999877773288999998---51--5765453430---------22440236988858168999975578676999888
Q ss_pred HHHHHHCEEEEEEECCCCCCHHHHH---HHH-HHH---HCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCC
Q ss_conf 9987421789999768788647899---999-999---729978999975436674025689999988862267301104
Q gi|254780233|r 101 RILCMVESVVVLVDAAEGPMPQTKF---VVG-KAL---KIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLD 173 (624)
Q Consensus 101 r~l~~~DgaiLvVdA~eGv~~QT~~---vl~-~A~---~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld 173 (624)
.--+-+.|||||-|-..- -|-- .|- -|. ..++.++++=||.|.+.-| +|-.|==+.|.. +--
T Consensus 74 syYr~a~GalLVydit~r---~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR--~Vs~EEGeaFA~------ehg 142 (216)
T KOG0098 74 SYYRGAAGALLVYDITRR---ESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARR--EVSKEEGEAFAR------EHG 142 (216)
T ss_pred HHHCCCCCEEEEEECCCH---HHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCC--CCCHHHHHHHHH------HCC
T ss_conf 884467623899971306---667789999999997267883899974414421023--465888999999------739
Q ss_pred HHHHHHHHHCCEECCCCCCCCCCCCHHHHHHH
Q ss_conf 26688788659164674223348641355532
Q gi|254780233|r 174 FPILYGSGRFGWMSDSSDGSRDQGMVPLLNLI 205 (624)
Q Consensus 174 ~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~I 205 (624)
++...+||+.| .+++..|-.+
T Consensus 143 LifmETSakt~-----------~~VEEaF~nt 163 (216)
T KOG0098 143 LIFMETSAKTA-----------ENVEEAFINT 163 (216)
T ss_pred CEEEHHHHHHH-----------HHHHHHHHHH
T ss_conf 54441244554-----------2399999999
No 293
>KOG0075 consensus
Probab=97.67 E-value=0.00025 Score=47.57 Aligned_cols=153 Identities=22% Similarity=0.320 Sum_probs=97.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHHH
Q ss_conf 99985468987788999999839614232200000388577987096064679999989979999728987540799999
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVER 101 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVer 101 (624)
+.++|-.-+|||||+.... +|-+ .+ +.=+.+|.-. --+.-....|-+-|-||..-|-.-=||
T Consensus 23 l~lvGLq~sGKtt~Vnvia--~g~~-----~e-------dmiptvGfnm----rkvtkgnvtik~wD~gGq~rfrsmWer 84 (186)
T KOG0075 23 LSLVGLQNSGKTTLVNVIA--RGQY-----LE-------DMIPTVGFNM----RKVTKGNVTIKLWDLGGQPRFRSMWER 84 (186)
T ss_pred EEEEEECCCCCCEEEEEEE--CCCC-----HH-------HHCCCCCCEE----EEECCCCEEEEEEECCCCCCHHHHHHH
T ss_conf 8888532478525888875--0674-----56-------6430246326----883158369999836997608889999
Q ss_pred HHHHHCEEEEEEECCCCCCH--HHH----HHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHC-CH
Q ss_conf 98742178999976878864--789----999999972997899997543667402568999998886226730110-42
Q gi|254780233|r 102 ILCMVESVVVLVDAAEGPMP--QTK----FVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQL-DF 174 (624)
Q Consensus 102 ~l~~~DgaiLvVdA~eGv~~--QT~----~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~l-d~ 174 (624)
--+-++..+.+|||++ +.- ..| -.|.+..-.++|.+|.=||+|+++|--.. +|...++..+-+- +.
T Consensus 85 ycR~v~aivY~VDaad-~~k~~~sR~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~------~li~rmgL~sitdREv 157 (186)
T KOG0075 85 YCRGVSAIVYVVDAAD-PDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKI------ALIERMGLSSITDREV 157 (186)
T ss_pred HHCCCCEEEEEEECCC-CCCCHHHHHHHHHHHCCHHHCCCCEEEECCCCCCCCCCCHH------HHHHHHCCCCCCCCEE
T ss_conf 8603868999961678-65343129999988503211487179962556675532278------9999838452446457
Q ss_pred HHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 668878865916467422334864135553210245
Q gi|254780233|r 175 PILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVP 210 (624)
Q Consensus 175 Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP 210 (624)
-.+-.|+++ +.+++.+++-+++|-.
T Consensus 158 cC~siScke-----------~~Nid~~~~Wli~hsk 182 (186)
T KOG0075 158 CCFSISCKE-----------KVNIDITLDWLIEHSK 182 (186)
T ss_pred EEEEEEECC-----------CCCHHHHHHHHHHHHH
T ss_conf 899998768-----------7568999999999767
No 294
>KOG0395 consensus
Probab=97.67 E-value=0.00013 Score=49.44 Aligned_cols=158 Identities=16% Similarity=0.180 Sum_probs=95.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHH
Q ss_conf 31499985468987788999999839614232200000388577987096064679999989979999728987540799
Q gi|254780233|r 19 IRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGE 98 (624)
Q Consensus 19 IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gE 98 (624)
-..++++|.-+-|||+|+=+.+. +.+... +.-+. | +...+...+.-..+.+.|+||+|-.+|...
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~--~~f~~~------y~pti--e-----d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~ 67 (196)
T KOG0395 3 EYKVVVLGAGGVGKSALTIQFLT--GRFVED------YDPTI--E-----DSYRKELTVDGEVCMLEILDTAGQEEFSAM 67 (196)
T ss_pred CEEEEEECCCCCCCCCEEEEECC--CCCCCC------CCCCC--C-----CCEEEEEEECCEEEEEEEEECCCCCCCHHH
T ss_conf 14799977898885305789635--755443------47976--7-----631599998997889999828885347688
Q ss_pred HHHHHHHHCEEEEEEECCCCCC-HHHHHHHHHHH----HCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCC
Q ss_conf 9999874217899997687886-47899999999----729978999975436674025689999988862267301104
Q gi|254780233|r 99 VERILCMVESVVVLVDAAEGPM-PQTKFVVGKAL----KIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLD 173 (624)
Q Consensus 99 Ver~l~~~DgaiLvVdA~eGv~-~QT~~vl~~A~----~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld 173 (624)
-+..++..||-+||.+..+=-- -.....+.+-+ ...+|.+++-||.|.+..|.-. .++-..|. ....
T Consensus 68 ~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~-~eeg~~la-------~~~~ 139 (196)
T KOG0395 68 RDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVS-EEEGKALA-------RSWG 139 (196)
T ss_pred HHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHCCCC-HHHHHHHH-------HHHC
T ss_conf 887755486899999898888999999999999864076778879998855532304243-99999999-------9709
Q ss_pred HHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 2668878865916467422334864135553210245
Q gi|254780233|r 174 FPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVP 210 (624)
Q Consensus 174 ~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP 210 (624)
.+.+.+||+.. .+++.+|..++..+-
T Consensus 140 ~~f~E~Sak~~-----------~~v~~~F~~L~r~~~ 165 (196)
T KOG0395 140 CAFIETSAKLN-----------YNVDEVFYELVREIR 165 (196)
T ss_pred CCEEEEECCCC-----------CCHHHHHHHHHHHHH
T ss_conf 96799751447-----------588999999999998
No 295
>KOG1547 consensus
Probab=97.67 E-value=9.5e-05 Score=50.38 Aligned_cols=117 Identities=23% Similarity=0.285 Sum_probs=62.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCC-CEEEEEEEEEEECCE--EEEEECCCCCCCCHH
Q ss_conf 49998546898778899999983961423220000038857798709-606467999998997--999972898754079
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERG-ITILAKVTSIVWNDV--RINIVDTPGHADFGG 97 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRG-ITI~a~~~~~~~~~~--~iNiiDTPGH~DF~g 97 (624)
||-++|..+.|||||+..| +.|...+... .|. ..|+-+. +-|.+..-.++-++. ++|+|||||+.||.-
T Consensus 48 NIMVVgqSglgkstlinTl-f~s~v~~~s~------~~~-~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqIn 119 (336)
T KOG1547 48 NIMVVGQSGLGKSTLINTL-FKSHVSDSSS------SDN-SAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQIN 119 (336)
T ss_pred EEEEEECCCCCCHHHHHHH-HHHHHHHCCC------CCC-CCCCCCCEEEEEEEEEEEEECCEEEEEEEECCCCCCCCCC
T ss_conf 7999806877711567888-8888761258------976-5675564278875344533066589988834898533337
Q ss_pred H--------------HH----------HHHHH----HCEEEEEEECCCCC-CHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 9--------------99----------99874----21789999768788-647899999999729978999975436
Q gi|254780233|r 98 E--------------VE----------RILCM----VESVVVLVDAAEGP-MPQTKFVVGKALKIGLRPIVVVNKVDR 146 (624)
Q Consensus 98 E--------------Ve----------r~l~~----~DgaiLvVdA~eGv-~~QT~~vl~~A~~~~l~~IvvINKiDr 146 (624)
- -| |--+. +-++|.-+.++.-- .|---..++. +..-+-++.||-|-|.
T Consensus 120 N~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkr-Lt~vvNvvPVIakaDt 196 (336)
T KOG1547 120 NDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKR-LTEVVNVVPVIAKADT 196 (336)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCHHHHHH-HHHHHEEEEEEEECCC
T ss_conf 5320677999999999999999986776513887547899999679887567044999998-8655204335750664
No 296
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.67 E-value=0.00057 Score=45.26 Aligned_cols=70 Identities=19% Similarity=0.205 Sum_probs=51.2
Q ss_pred EEECCEEEEEECCCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf 998997999972898754079999998742178999976878864789999999972997899997543667
Q gi|254780233|r 77 IVWNDVRINIVDTPGHADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSD 148 (624)
Q Consensus 77 ~~~~~~~iNiiDTPGH~DF~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~ 148 (624)
..|+++-+-|||||-... -.+..++..+|.+++|+....=-.-.++++...+.++++|.-+++||.|-..
T Consensus 88 ~~~~~~D~viiD~Ppg~~--~~~~~al~~ad~~iiVttP~~~si~d~~r~i~l~~~~~~~~gvV~Nr~~~~~ 157 (179)
T cd03110 88 AKAEGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIPVGVVINKYDLND 157 (179)
T ss_pred HHCCCCCEEEEECCCCCC--HHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 644379989981899975--7899999739949998199478999999999999982997899996887887
No 297
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=97.66 E-value=0.00065 Score=44.89 Aligned_cols=153 Identities=20% Similarity=0.287 Sum_probs=85.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEE-EEEE-CCEEEEEECCCCC----
Q ss_conf 314999854689877889999998396142322000003885779870960646799-9998-9979999728987----
Q gi|254780233|r 19 IRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVT-SIVW-NDVRINIVDTPGH---- 92 (624)
Q Consensus 19 IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~-~~~~-~~~~iNiiDTPGH---- 92 (624)
|-.|+++|--.+|||||.-++ |.+-.+-+ ||. .|-+.-+. -+.. .+..+-+-|-||-
T Consensus 159 lADVGLVG~PNaGKSTlls~v---S~AkPKIa-------dYp-------FTTL~PnLGvV~~~~~~sfv~ADIPGLIEGA 221 (369)
T COG0536 159 LADVGLVGLPNAGKSTLLSAV---SAAKPKIA-------DYP-------FTTLVPNLGVVRVDGGESFVVADIPGLIEGA 221 (369)
T ss_pred ECCCCCCCCCCCCHHHHHHHH---HHCCCCCC-------CCC-------CCCCCCCCCEEEECCCCEEEEECCCCCCCCC
T ss_conf 001141258988579899888---60688544-------886-------5302475307996488607993475323564
Q ss_pred -------CCCHHHHHHHHHHHCEEEEEEECC--CCCCH--HHHHHHHHHHH-----CCCCEEEEEECCCCCCCCHHHHHH
Q ss_conf -------540799999987421789999768--78864--78999999997-----299789999754366740256899
Q gi|254780233|r 93 -------ADFGGEVERILCMVESVVVLVDAA--EGPMP--QTKFVVGKALK-----IGLRPIVVVNKVDRSDARADEVIN 156 (624)
Q Consensus 93 -------~DF~gEVer~l~~~DgaiLvVdA~--eGv~~--QT~~vl~~A~~-----~~l~~IvvINKiDr~~a~~~~v~~ 156 (624)
.+|-.-+|| +-.-+.|||.+ ++.-| +-+.++..... .+.|.+++.||||.+.++ +-.+
T Consensus 222 s~G~GLG~~FLrHIER----t~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~--e~~~ 295 (369)
T COG0536 222 SEGVGLGLRFLRHIER----TRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDE--EELE 295 (369)
T ss_pred CCCCCCCHHHHHHHHH----HHEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCHHHCCCCEEEEEECCCCCCCH--HHHH
T ss_conf 4688763888878886----515479985676567798999999999999857775358569998555776678--9999
Q ss_pred HHHHHHHHCCCCHHHCCH-HHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf 999888622673011042-6688788659164674223348641355532102454
Q gi|254780233|r 157 EVFDLFSALDATDAQLDF-PILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPP 211 (624)
Q Consensus 157 ei~dlf~~l~a~de~ld~-Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~ 211 (624)
+....+.+ +... +.+|.||.++ .|+++|++.+.+.+..
T Consensus 296 ~~~~~l~~------~~~~~~~~~ISa~t~-----------~g~~~L~~~~~~~l~~ 334 (369)
T COG0536 296 ELKKALAE------ALGWEVFYLISALTR-----------EGLDELLRALAELLEE 334 (369)
T ss_pred HHHHHHHH------HCCCCCCEEEEHHCC-----------CCHHHHHHHHHHHHHH
T ss_conf 99999987------408876315543102-----------4879999999999997
No 298
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.65 E-value=0.00014 Score=49.21 Aligned_cols=98 Identities=21% Similarity=0.293 Sum_probs=63.8
Q ss_pred CCCCC-CHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 98754-07999999874217899997687886478999999997299789999754366740256899999888622673
Q gi|254780233|r 90 PGHAD-FGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDAT 168 (624)
Q Consensus 90 PGH~D-F~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~ 168 (624)
|||-- ..-+++..+..+|.+|.|+||..+.-..-....+ .+ .+.|.|+++||+|.-+.. ..++....|...
T Consensus 3 pghm~k~~~~~~~~l~~sDlIl~V~DaR~pl~~~~~~l~~-~~-~~K~~ilV~NK~DL~~~~---~~~~~~~~~~~~--- 74 (171)
T cd01856 3 PGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEK-IL-GNKPRIIVLNKADLADPK---KTKKWLKYFESK--- 74 (171)
T ss_pred CHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHH-HH-CCCCEEEEEECCCCCCHH---HHHHHHHHHHCC---
T ss_conf 5489999999999998699999999898888765289999-97-689889998555558978---999999999807---
Q ss_pred HHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 011042668878865916467422334864135553210245
Q gi|254780233|r 169 DAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVP 210 (624)
Q Consensus 169 de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP 210 (624)
.+++++.||+++ .|+..|.+.+.+..+
T Consensus 75 ----~~~~~~~sa~~~-----------~g~~~l~~~i~~~~~ 101 (171)
T cd01856 75 ----GEKVLFVNAKSG-----------KGVKKLLKAAKKLLK 101 (171)
T ss_pred ----CCCEEEEECCCC-----------CCHHHHHHHHHHHHH
T ss_conf ----996799842266-----------578999999999735
No 299
>PRK12288 ribosome-associated GTPase; Reviewed
Probab=97.65 E-value=0.00012 Score=49.68 Aligned_cols=81 Identities=23% Similarity=0.515 Sum_probs=53.7
Q ss_pred HHCEEEEEEECCCCCCHHHHHH---HHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHH
Q ss_conf 4217899997687886478999---9999972997899997543667402568999998886226730110426688788
Q gi|254780233|r 105 MVESVVVLVDAAEGPMPQTKFV---VGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFPILYGSG 181 (624)
Q Consensus 105 ~~DgaiLvVdA~eGv~~QT~~v---l~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~Pv~~~Sa 181 (624)
-+|-+++| -|.+ |.+.+..+ |-.|...++++++++||+|.-+..-...+++..+.+.. +.+|+++.|+
T Consensus 122 NIDqvlIV-~A~~-P~~~~~liDRyLv~ae~~~I~pvIvlNK~DL~~~~~~~~~~~~l~~Y~~-------lGY~v~~~Sa 192 (344)
T PRK12288 122 NIDQIVIV-SAVL-PELSLNIIDRYLVACETLGIEPLIVLNKIDLLDDEERPFVNEQLDIYRN-------IGYRVLMVSS 192 (344)
T ss_pred ECCEEEEE-EECC-CCCCHHHHHHHHHHHHHCCCCEEEEEECHHCCCHHHHHHHHHHHHHHHH-------CCCEEEEEEC
T ss_conf 16889999-9689-9989789999999999869977999731440897789999999999986-------7973999736
Q ss_pred HCCEECCCCCCCCCCCCHHHHHHH
Q ss_conf 659164674223348641355532
Q gi|254780233|r 182 RFGWMSDSSDGSRDQGMVPLLNLI 205 (624)
Q Consensus 182 ~~G~~~~~~~~~~~~gl~~Lld~I 205 (624)
++| .|++.|.+.+
T Consensus 193 ~~~-----------~gl~~L~~~L 205 (344)
T PRK12288 193 HTG-----------EGLEPLEAAL 205 (344)
T ss_pred CCC-----------CCHHHHHHHH
T ss_conf 886-----------2899999987
No 300
>KOG0394 consensus
Probab=97.65 E-value=0.00035 Score=46.64 Aligned_cols=157 Identities=16% Similarity=0.176 Sum_probs=91.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEE----EEEEEEECCEEEEEECCCCC
Q ss_conf 24314999854689877889999998396142322000003885779870960646----79999989979999728987
Q gi|254780233|r 17 MQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILA----KVTSIVWNDVRINIVDTPGH 92 (624)
Q Consensus 17 ~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a----~~~~~~~~~~~iNiiDTPGH 92 (624)
..+--|.|+|..++|||+|+-+..+. +..+.---||.+ |-..+.-+-..+-|.||-|.
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~------------------kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQ 68 (210)
T KOG0394 7 RTLLKVIILGDSGVGKTSLMNQYVNK------------------KFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQ 68 (210)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH------------------HHHHHHCCCCCCEEEEEEEEECCEEEEEEEEECCCH
T ss_conf 64359999379984478999999888------------------888874320001103227998676999998733117
Q ss_pred CCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHH--------CCCCEEEEEECCCCCCCCHHHHHH-HHHHHHH
Q ss_conf 5407999999874217899997687886478999999997--------299789999754366740256899-9998886
Q gi|254780233|r 93 ADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALK--------IGLRPIVVVNKVDRSDARADEVIN-EVFDLFS 163 (624)
Q Consensus 93 ~DF~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~--------~~l~~IvvINKiDr~~a~~~~v~~-ei~dlf~ 163 (624)
.-|-.=-.+--+-+|.++|+-|...--.-.+.-.|++-+- ..-|-|++=||+|.++.....|-. ..++.-.
T Consensus 69 ERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~ 148 (210)
T KOG0394 69 ERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCK 148 (210)
T ss_pred HHHHHCCCCEECCCCEEEEEECCCCHHHHCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCEEEHHHHHHHHH
T ss_conf 77631464112477547898326864665118789999987468799775667997551147777501201889999998
Q ss_pred HCCCCHHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 226730110426688788659164674223348641355532102
Q gi|254780233|r 164 ALDATDAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDH 208 (624)
Q Consensus 164 ~l~a~de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~ 208 (624)
+.-++|.+..|||++ .+++..|+.|...
T Consensus 149 ------s~gnipyfEtSAK~~-----------~NV~~AFe~ia~~ 176 (210)
T KOG0394 149 ------SKGNIPYFETSAKEA-----------TNVDEAFEEIARR 176 (210)
T ss_pred ------HCCCCEEEEECCCCC-----------CCHHHHHHHHHHH
T ss_conf ------659950687102434-----------4689999999999
No 301
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.60 E-value=0.0005 Score=45.62 Aligned_cols=127 Identities=15% Similarity=0.236 Sum_probs=72.2
Q ss_pred EEEE-CCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHH----------HHHCCCEEEEEEEEEEECCEEEEEECCC
Q ss_conf 9998-5468987788999999839614232200000388577----------9870960646799999899799997289
Q gi|254780233|r 22 IAII-AHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDL----------EKERGITILAKVTSIVWNDVRINIVDTP 90 (624)
Q Consensus 22 iaIi-aHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~----------EreRGITI~a~~~~~~~~~~~iNiiDTP 90 (624)
|||+ +-.+-||||++=.|-. ++.+.|.- --+.|.+.. +.+-..|+ ..+-++|+ -|||||
T Consensus 2 Iav~s~KGGVGKTT~a~NLA~---aLa~~g~~-vllvD~D~~~~~l~~~~~~~~~~~~~~----~~vl~gD~--viiD~p 71 (179)
T cd02036 2 IVVTSGKGGVGKTTTTANLGT---ALAQLGYK-VVLIDADLGLRNLDLILGLENRVVYTL----HDVLAGDY--ILIDSP 71 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHH---HHHHCCCC-EEEEECCCCCCCCHHHCCCCCCCCCHH----HCCCCCCE--EEEECC
T ss_conf 899739998709999999999---99977991-899958999998366617655665313----11266999--999799
Q ss_pred CCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEE-EEEECCCCCCCCHHHHHHHHHH
Q ss_conf 875407999999874217899997687886478999999997299789-9997543667402568999998
Q gi|254780233|r 91 GHADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPI-VVVNKVDRSDARADEVINEVFD 160 (624)
Q Consensus 91 GH~DF~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~I-vvINKiDr~~a~~~~v~~ei~d 160 (624)
.-.+ ..+..++.++|.+++++...---...+.++++.+.+.+.+.+ +++||.+.......+..+++.+
T Consensus 72 pg~~--~~~~~~l~~ad~vlvv~~p~~~sl~~~~~~~~~~~~~~~~~~~vv~Nr~~~~~~~~~~~~~~~~~ 140 (179)
T cd02036 72 AGIE--RGFITAIAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPDMVEGGDMVEDIEE 140 (179)
T ss_pred CCCC--HHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHH
T ss_conf 9988--89999998468125637885889999999999998259964699984546766636779999998
No 302
>KOG0094 consensus
Probab=97.59 E-value=0.0028 Score=40.77 Aligned_cols=163 Identities=21% Similarity=0.266 Sum_probs=100.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHH
Q ss_conf 43149998546898778899999983961423220000038857798709606467999998997999972898754079
Q gi|254780233|r 18 QIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGG 97 (624)
Q Consensus 18 ~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~g 97 (624)
+.=-+..+|--.-|||+|+-+.+|.+- ...= ..+ =||--.|+...++=..+++-+.||-|..-|-.
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~f--d~~Y--qAT----------IGiDFlskt~~l~d~~vrLQlWDTAGQERFrs 86 (221)
T KOG0094 21 KKYKLVFLGDQSVGKTSLITRFMYDKF--DNTY--QAT----------IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS 86 (221)
T ss_pred EEEEEEEECCCCCCHHHHHHHHHHHHH--CCCC--CCE----------EEEEEEEEEEEECCCEEEEEEEECCCHHHHHH
T ss_conf 077899986676544788889987630--4645--654----------65677788899738178999875446787753
Q ss_pred HHHHHHHHHCEEEEEEECCC-CCCHHHHHHHHHHHH-CCC---CEEEEEECCCCCCCCHHHHHHH-HHHHHHHCCCCHHH
Q ss_conf 99999874217899997687-886478999999997-299---7899997543667402568999-99888622673011
Q gi|254780233|r 98 EVERILCMVESVVVLVDAAE-GPMPQTKFVVGKALK-IGL---RPIVVVNKVDRSDARADEVINE-VFDLFSALDATDAQ 171 (624)
Q Consensus 98 EVer~l~~~DgaiLvVdA~e-Gv~~QT~~vl~~A~~-~~l---~~IvvINKiDr~~a~~~~v~~e-i~dlf~~l~a~de~ 171 (624)
-+-.-.+-+..||+|-|-.+ +-.-+|..-+.-+.. .+- -+.+|=||-|..+.| ++..+ -...-.++++
T Consensus 87 lipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkr--qvs~eEg~~kAkel~a---- 160 (221)
T KOG0094 87 LIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKR--QVSIEEGERKAKELNA---- 160 (221)
T ss_pred HHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHH--HHHHHHHHHHHHHHCC----
T ss_conf 1055503873799999635640177699999999860688865999971631244465--6538878988987295----
Q ss_pred CCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCCCCC
Q ss_conf 0426688788659164674223348641355532102454223
Q gi|254780233|r 172 LDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPPVI 214 (624)
Q Consensus 172 ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~P~~ 214 (624)
+ .+..||+.| .++.+||.-|...+|.+..
T Consensus 161 -~--f~etsak~g-----------~NVk~lFrrIaa~l~~~~~ 189 (221)
T KOG0094 161 -E--FIETSAKAG-----------ENVKQLFRRIAAALPGMEV 189 (221)
T ss_pred -E--EEEECCCCC-----------CCHHHHHHHHHHHCCCCCC
T ss_conf -8--998304479-----------9889999999986657310
No 303
>pfam03029 ATP_bind_1 Conserved hypothetical ATP binding protein. Members of this family are found in a range of archaea and eukaryotes and have hypothesized ATP binding activity.
Probab=97.57 E-value=7.6e-05 Score=51.01 Aligned_cols=66 Identities=26% Similarity=0.302 Sum_probs=40.5
Q ss_pred EEEEECCCCCCCC------HHHHHHHHH-HHCEEEEEEECCCCCCHHHH-----HHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf 9999728987540------799999987-42178999976878864789-----999999972997899997543667
Q gi|254780233|r 83 RINIVDTPGHADF------GGEVERILC-MVESVVVLVDAAEGPMPQTK-----FVVGKALKIGLRPIVVVNKVDRSD 148 (624)
Q Consensus 83 ~iNiiDTPGH~DF------~gEVer~l~-~~DgaiLvVdA~eGv~~QT~-----~vl~~A~~~~l~~IvvINKiDr~~ 148 (624)
.+-|+||||-..| +...-+.|. .-=+++.++|+.-=.-|.+- ..+.-..+.++|.|.++||+|.-.
T Consensus 91 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~v~l~D~~~~~d~~~fis~~L~a~s~m~~l~lP~vnvlsK~Dl~~ 168 (234)
T pfam03029 91 DYYLFDTPGQIELFTHWDSLARGVEALEASRLGAVYLVDTRRLTDPIDFFSGLLYALSIMLRLGLPFVVALNKFDLLS 168 (234)
T ss_pred CEEEEECCCCEEEEECCHHHHHHHHHHHCCCEEEEEEECHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHCCC
T ss_conf 769983698357654002699999997128738999842577468888999999999999974899443100041354
No 304
>KOG1532 consensus
Probab=97.56 E-value=0.00019 Score=48.47 Aligned_cols=132 Identities=27% Similarity=0.364 Sum_probs=71.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCC----------------E-ECCCCHHHHH------CCCEEEEE--EE
Q ss_conf 4999854689877889999998396142322000----------------0-0388577987------09606467--99
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSE----------------R-VMDCNDLEKE------RGITILAK--VT 75 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~----------------~-vmD~~~~Ere------RGITI~a~--~~ 75 (624)
-|-++|-.++||||.+-+|-.+...-..+.-+-+ | .-++.+.=++ -||+-... .|
T Consensus 21 ~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLNLF~t 100 (366)
T KOG1532 21 IILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLNLFAT 100 (366)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 79999447788413999999998623699808867888854888667756654309999998388998640335899998
Q ss_pred EE---------EECCEEEEEECCCCCCC-C----HHHHH-HHH-HHHCE-EEEEEECCCCCCHHHH-----HHHHHHHHC
Q ss_conf 99---------98997999972898754-0----79999-998-74217-8999976878864789-----999999972
Q gi|254780233|r 76 SI---------VWNDVRINIVDTPGHAD-F----GGEVE-RIL-CMVES-VVVLVDAAEGPMPQTK-----FVVGKALKI 133 (624)
Q Consensus 76 ~~---------~~~~~~iNiiDTPGH~D-F----~gEVe-r~l-~~~Dg-aiLvVdA~eGv~~QT~-----~vl~~A~~~ 133 (624)
.| .-..++.-||||||... | +|-+. -+| ++-+. ++-|||...--.|-|- +.-......
T Consensus 101 k~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilykt 180 (366)
T KOG1532 101 KFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKT 180 (366)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCEEEEEECCCCCCHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 78999999997422047799748880689984278501586676139859999944776788416998899999999862
Q ss_pred CCCEEEEEECCCCCCCCHH
Q ss_conf 9978999975436674025
Q gi|254780233|r 134 GLRPIVVVNKVDRSDARAD 152 (624)
Q Consensus 134 ~l~~IvvINKiDr~~a~~~ 152 (624)
.||.|++.||.|..++.|.
T Consensus 181 klp~ivvfNK~Dv~d~~fa 199 (366)
T KOG1532 181 KLPFIVVFNKTDVSDSEFA 199 (366)
T ss_pred CCCEEEEEECCCCCCCHHH
T ss_conf 6876999714344561889
No 305
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.56 E-value=0.00032 Score=46.89 Aligned_cols=160 Identities=21% Similarity=0.271 Sum_probs=85.6
Q ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCC-CEECCCCHHHHHC--CCEEEEEEEE-------------
Q ss_conf 46802431499985468987788999999839614232200-0003885779870--9606467999-------------
Q gi|254780233|r 13 RLGYMQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVS-ERVMDCNDLEKER--GITILAKVTS------------- 76 (624)
Q Consensus 13 ~~~~~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~-~~vmD~~~~EreR--GITI~a~~~~------------- 76 (624)
.+...+|.-+-+++--++|||||.++.+..-+---..+.++ |.. -++|-||=| |+...--||.
T Consensus 98 ~f~~~gv~~lNl~sSPGSGKTtLLe~ti~~L~~~~~~aVIeGD~~-T~~DA~RI~~~Gv~avQInTG~~CHLDA~MV~~a 176 (290)
T PRK10463 98 RFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQ-TVNDAARIRATGTPAIQVNTGKGCHLDAQMIADA 176 (290)
T ss_pred HHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCC-CHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHH
T ss_conf 999879189993069987889999999998733675799960423-5667999997699589954799767599999999
Q ss_pred ---EEECCEEEEEEC------CCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf ---998997999972------89875407999999874217899997687886478999999997299789999754366
Q gi|254780233|r 77 ---IVWNDVRINIVD------TPGHADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRS 147 (624)
Q Consensus 77 ---~~~~~~~iNiiD------TPGH~DF~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~ 147 (624)
+.+.+.-+-||. +|--.|.+ -+.=++|++.+||----- ++-.-+...-+++|||+|.-
T Consensus 177 l~~l~l~~~dllfIENVGNLVCPA~FDLG---------E~~kVvvlSVtEGeDKPl----KYP~mF~~ad~vlinKiDLl 243 (290)
T PRK10463 177 APRLPLDDNGILFIENVGNLVCPASFDLG---------EKHKVAVLSVTEGEDKPL----KYPHMFAAASLMLLNKVDLL 243 (290)
T ss_pred HHHCCCCCCCEEEEECCCCCCCCCCCCCC---------CCEEEEEEEECCCCCCCC----CCHHHHHHCCEEEEEHHHHH
T ss_conf 98489877989998127884355120367---------761799997068888644----47667642578998656512
Q ss_pred C---CCHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHH
Q ss_conf 7---4025689999988862267301104266887886591646742233486413555321
Q gi|254780233|r 148 D---ARADEVINEVFDLFSALDATDAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIV 206 (624)
Q Consensus 148 ~---a~~~~v~~ei~dlf~~l~a~de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii 206 (624)
. .+.+...+.+.. ++. +.||+..||++| +||+..++.+-
T Consensus 244 p~~dFD~~~~~~~~~~----vNp-----~~~v~~vSa~tG-----------eGld~W~~WL~ 285 (290)
T PRK10463 244 PYLNFDVEKCIACARE----VNP-----EIEIILISATSG-----------EGMDQWLNWLE 285 (290)
T ss_pred HHCCCCHHHHHHHHHH----HCC-----CCCEEEEECCCC-----------CCHHHHHHHHH
T ss_conf 2028899999999998----698-----985899756888-----------78999999999
No 306
>TIGR02729 Obg_CgtA GTP-binding protein Obg/CgtA; InterPro: IPR014100 This entry describes a universal, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure..
Probab=97.53 E-value=0.0019 Score=41.85 Aligned_cols=110 Identities=23% Similarity=0.334 Sum_probs=70.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCE----EEEEECCCCC--
Q ss_conf 3149998546898778899999983961423220000038857798709606467999998997----9999728987--
Q gi|254780233|r 19 IRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDV----RINIVDTPGH-- 92 (624)
Q Consensus 19 IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~----~iNiiDTPGH-- 92 (624)
|=.|++||=--+|||||.-++ |.+-.+ +. ||.- -|+.-..=-++++++ .|-|-|=||=
T Consensus 158 lADVGLvGfPNAGKSTLLs~~---S~AkPK---iA----dYPF------TTL~P~LGvv~~~~~~Y~~~fviADIPGLIE 221 (296)
T TIGR02729 158 LADVGLVGFPNAGKSTLLSAI---SNAKPK---IA----DYPF------TTLEPNLGVVRVDDNKYERSFVIADIPGLIE 221 (296)
T ss_pred EEEEEEECCCCCCHHHHHHHH---HCCCCE---EC----CCCC------CCCCCCEEEEEECCCCEEEEEEEEECCCCHH
T ss_conf 620210357887468888887---627882---23----8787------4565311289874874168899985686156
Q ss_pred ---------CCCHHHHHHHHHHHCEEEEEEECCCC-------CCHHHH-HHHHHHH-H-----CCCCEEEEEECCCCCC
Q ss_conf ---------54079999998742178999976878-------864789-9999999-7-----2997899997543667
Q gi|254780233|r 93 ---------ADFGGEVERILCMVESVVVLVDAAEG-------PMPQTK-FVVGKAL-K-----IGLRPIVVVNKVDRSD 148 (624)
Q Consensus 93 ---------~DF~gEVer~l~~~DgaiLvVdA~eG-------v~~QT~-~vl~~A~-~-----~~l~~IvvINKiDr~~ 148 (624)
.+|-=-+|| |-.-|.|||++.- --|=.- ..+++=| . +..|.|||+||||.++
T Consensus 222 GAs~G~GLG~~FLKHIER----t~~L~hviD~~~~qlSkh~~~~p~~~y~~l~~EL~~Y~~~L~~k~~~iv~NK~Dl~~ 296 (296)
T TIGR02729 222 GASEGKGLGHKFLKHIER----TRLLLHVIDASGIQLSKHDGRDPIEDYETLRNELELYSPELADKPQIIVLNKIDLLD 296 (296)
T ss_pred HHHCCCCCCHHHHHHHHH----EEEEEEEEECCCCEEEECCCCCHHHHHHHHHHHHHHCCHHHCCCCEEEEEEECCCCC
T ss_conf 662688753355457520----266887980687534242898889999999999975087362780799986067789
No 307
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=97.50 E-value=0.0022 Score=41.39 Aligned_cols=111 Identities=23% Similarity=0.402 Sum_probs=63.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCH----
Q ss_conf 4999854689877889999998396142322000003885779870960646799999899799997289875407----
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFG---- 96 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~---- 96 (624)
+|+++|--++|||+....+|-.. .|..... ...+|=.....+-.|.+.+|++|||||-.|-.
T Consensus 2 rIvLlGktGsGKSstgNtILG~~-~F~s~~~-------------~~svT~~c~~~~~~~~gr~v~VIDTPg~~dt~~~~~ 67 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGRE-VFESKLS-------------ASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPE 67 (196)
T ss_pred EEEEECCCCCCCHHHHEEECCCC-CCCCCCC-------------CCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCHH
T ss_conf 89997899986153403256876-6678899-------------998755888888998893799996776356558979
Q ss_pred ---HHHHHHHHHH----CEEEEEEECCCCCCHHHH-HHHHHHH-HCC----CCEEEEEECCCCC
Q ss_conf ---9999998742----178999976878864789-9999999-729----9789999754366
Q gi|254780233|r 97 ---GEVERILCMV----ESVVVLVDAAEGPMPQTK-FVVGKAL-KIG----LRPIVVVNKVDRS 147 (624)
Q Consensus 97 ---gEVer~l~~~----DgaiLvVdA~eGv~~QT~-~vl~~A~-~~~----l~~IvvINKiDr~ 147 (624)
-|+.|++..+ ...|||+... -..+.. ..+.+-. -.| --.||+.+--|.-
T Consensus 68 ~~~~ei~~~~~l~~pGpHa~LLVi~~~--rfT~ee~~~v~~i~~~FGe~~~~~tivLFT~~D~L 129 (196)
T cd01852 68 QLSKEIVRCLSLSAPGPHAFLLVVPLG--RFTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDL 129 (196)
T ss_pred HHHHHHHHHHHHCCCCCEEEEEEEECC--CCCHHHHHHHHHHHHHHCHHHHHHEEEEEECCCCC
T ss_conf 999999999984389973999999789--88989999999999997778685289999654011
No 308
>KOG0093 consensus
Probab=97.45 E-value=0.001 Score=43.56 Aligned_cols=156 Identities=17% Similarity=0.117 Sum_probs=90.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHH
Q ss_conf 49998546898778899999983961423220000038857798709606467999998997999972898754079999
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVE 100 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVe 100 (624)
-+-|||....|||+++=+-+-.|=+..=-. --||--++|.+--.-+..++-|.||-|..-+..=..
T Consensus 23 KlliiGnssvGKTSfl~ry~ddSFt~afvs--------------TvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTT 88 (193)
T KOG0093 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVS--------------TVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITT 88 (193)
T ss_pred EEEEECCCCCCCHHHHHHHHCCCCCCCEEE--------------EEEEEEEEEEEEECCCEEEEEEEECCCCHHHHHHHH
T ss_conf 689972687662135577606554400046--------------631137886765146477889871665103567778
Q ss_pred HHHHHHCEEEEEEECCCCCCHHHHHHH----HHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHH
Q ss_conf 998742178999976878864789999----9999729978999975436674025689999988862267301104266
Q gi|254780233|r 101 RILCMVESVVVLVDAAEGPMPQTKFVV----GKALKIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFPI 176 (624)
Q Consensus 101 r~l~~~DgaiLvVdA~eGv~~QT~~vl----~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~Pv 176 (624)
.-.+-++|-+|.-|.+.----..-.-| +.-...+.++|++-||.|.++.|.-- .+....|.. ||.|..
T Consensus 89 ayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis-~e~g~~l~~-------~LGfef 160 (193)
T KOG0093 89 AYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVIS-HERGRQLAD-------QLGFEF 160 (193)
T ss_pred HHHHCCCEEEEEEECCCHHHHHHHHHHHHHHEEEECCCCEEEEEECCCCCCCCEEEE-HHHHHHHHH-------HHCHHH
T ss_conf 876146459999854787888989989887503431686189980455774320012-788889999-------848477
Q ss_pred HHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 887886591646742233486413555321024
Q gi|254780233|r 177 LYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 177 ~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
..+||+++ .++..+|+.+++.+
T Consensus 161 FEtSaK~N-----------inVk~~Fe~lv~~I 182 (193)
T KOG0093 161 FETSAKEN-----------INVKQVFERLVDII 182 (193)
T ss_pred HHHCCCCC-----------CCHHHHHHHHHHHH
T ss_conf 55133026-----------66999999999999
No 309
>KOG0095 consensus
Probab=97.35 E-value=0.0083 Score=37.62 Aligned_cols=150 Identities=25% Similarity=0.335 Sum_probs=89.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEE----EEEEEEEEECCEEEEEECCCCCCCC
Q ss_conf 149998546898778899999983961423220000038857798709606----4679999989979999728987540
Q gi|254780233|r 20 RNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITI----LAKVTSIVWNDVRINIVDTPGHADF 95 (624)
Q Consensus 20 RNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI----~a~~~~~~~~~~~iNiiDTPGH~DF 95 (624)
=.|+++|..+-|||-|+-+. .-|.|.-.+ |-|| .-|.+-+.-...|+.|.||-|..-|
T Consensus 8 fkivlvgnagvgktclvrrf--tqglfppgq----------------gatigvdfmiktvev~gekiklqiwdtagqerf 69 (213)
T KOG0095 8 FKIVLVGNAGVGKTCLVRRF--TQGLFPPGQ----------------GATIGVDFMIKTVEVNGEKIKLQIWDTAGQERF 69 (213)
T ss_pred EEEEEECCCCCCCCHHHHHH--HCCCCCCCC----------------CCEEEEEEEEEEEEECCEEEEEEEEECCCHHHH
T ss_conf 78999735776733004455--226789998----------------766423379999998780899998413256888
Q ss_pred HHHHHHHHHHHCEEEEEEECCCCC----CHHH-HHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHH
Q ss_conf 799999987421789999768788----6478-99999999729978999975436674025689999988862267301
Q gi|254780233|r 96 GGEVERILCMVESVVVLVDAAEGP----MPQT-KFVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDA 170 (624)
Q Consensus 96 ~gEVer~l~~~DgaiLvVdA~eGv----~~QT-~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de 170 (624)
..=...--+-+...+||-|-.--| .|.- +.+-..|- ..+-.|+|-||+|+.+. .+|-.++-+-|.+.
T Consensus 70 rsitqsyyrsahalilvydiscqpsfdclpewlreie~yan-~kvlkilvgnk~d~~dr--revp~qigeefs~~----- 141 (213)
T KOG0095 70 RSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYAN-NKVLKILVGNKIDLADR--REVPQQIGEEFSEA----- 141 (213)
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHHHH-CCEEEEEECCCCCHHHH--HHHHHHHHHHHHHH-----
T ss_conf 88899886411648999853457431013999999999850-64278761466561233--33058887888775-----
Q ss_pred HCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHC
Q ss_conf 1042668878865916467422334864135553210
Q gi|254780233|r 171 QLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVD 207 (624)
Q Consensus 171 ~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~ 207 (624)
| |.-.+..||++. .+++.||..+.-
T Consensus 142 q-dmyfletsakea-----------~nve~lf~~~a~ 166 (213)
T KOG0095 142 Q-DMYFLETSAKEA-----------DNVEKLFLDLAC 166 (213)
T ss_pred H-HHHHHHHCCCCH-----------HHHHHHHHHHHH
T ss_conf 5-566532020001-----------039999999999
No 310
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.34 E-value=0.00064 Score=44.94 Aligned_cols=122 Identities=21% Similarity=0.292 Sum_probs=73.4
Q ss_pred CCC-EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHH-HHCCCEEEEEEEEEEECCE--EEEEECCCCCC
Q ss_conf 431-4999854689877889999998396142322000003885779-8709606467999998997--99997289875
Q gi|254780233|r 18 QIR-NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLE-KERGITILAKVTSIVWNDV--RINIVDTPGHA 93 (624)
Q Consensus 18 ~IR-NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~E-reRGITI~a~~~~~~~~~~--~iNiiDTPGH~ 93 (624)
.|. ||-++|-.+.||||++-.|+-++- .+.. .. |-...+ .+.++.|.....-+.-++. .+|+|||||.-
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l-~~~~-~~-----~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfG 93 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSL-VDET-EI-----DDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFG 93 (373)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHC-CCCC-CC-----CCCCCCCCCCCEEEEEEEEEEECCCEEEEEEEECCCCCC
T ss_conf 9963899962788755578876567652-5777-75-----576666677625888643166048748988886158865
Q ss_pred CCHHH-----HH-------------------HHHHH----HCEEEEEEEC-CCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 40799-----99-------------------99874----2178999976-87886478999999997299789999754
Q gi|254780233|r 94 DFGGE-----VE-------------------RILCM----VESVVVLVDA-AEGPMPQTKFVVGKALKIGLRPIVVVNKV 144 (624)
Q Consensus 94 DF~gE-----Ve-------------------r~l~~----~DgaiLvVdA-~eGv~~QT~~vl~~A~~~~l~~IvvINKi 144 (624)
||.-- .- |..+. +.++|..+.- ..|+.+.--..++ .+...+-.|.||-|-
T Consensus 94 D~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk-~ls~~vNlIPVI~Ka 172 (373)
T COG5019 94 DFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMK-RLSKRVNLIPVIAKA 172 (373)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHH-HHHCCCCEEEEEECC
T ss_conf 6546410179999999999999999864345566544682489999846898878788899999-985336756566246
Q ss_pred CCC
Q ss_conf 366
Q gi|254780233|r 145 DRS 147 (624)
Q Consensus 145 Dr~ 147 (624)
|.-
T Consensus 173 D~l 175 (373)
T COG5019 173 DTL 175 (373)
T ss_pred CCC
T ss_conf 658
No 311
>PRK00098 ribosome-associated GTPase; Reviewed
Probab=97.30 E-value=0.0007 Score=44.70 Aligned_cols=80 Identities=30% Similarity=0.423 Sum_probs=53.6
Q ss_pred HHCEEEEEEECCCCCCHHHH---HHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHH
Q ss_conf 42178999976878864789---999999972997899997543667402568999998886226730110426688788
Q gi|254780233|r 105 MVESVVVLVDAAEGPMPQTK---FVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFPILYGSG 181 (624)
Q Consensus 105 ~~DgaiLvVdA~eGv~~QT~---~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~Pv~~~Sa 181 (624)
-+|-+++|+.+.+ |.++.. +.|-.|...++++++++||+|..+. .++ .++..+.+.. +.+|+++.|+
T Consensus 80 NiD~~~iV~s~~~-P~~~~~~idR~Lv~a~~~~i~pvivlnK~DL~~~-~~~-~~~~~~~y~~-------~gy~v~~~S~ 149 (298)
T PRK00098 80 NVDQAVIVFAAKE-PDFSTDLLDRFLVLAEANDIKPIIVLNKIDLVDD-LEE-ARERLALYRA-------IGYDVLELSA 149 (298)
T ss_pred ECCEEEEEEECCC-CCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCC-HHH-HHHHHHHHHH-------CCCCEEEEEC
T ss_conf 4478999985688-9899899999999999869958999642456477-999-9999999987-------8997899968
Q ss_pred HCCEECCCCCCCCCCCCHHHHHHH
Q ss_conf 659164674223348641355532
Q gi|254780233|r 182 RFGWMSDSSDGSRDQGMVPLLNLI 205 (624)
Q Consensus 182 ~~G~~~~~~~~~~~~gl~~Lld~I 205 (624)
.+| .|+++|.+.+
T Consensus 150 ~~~-----------~g~~~L~~~l 162 (298)
T PRK00098 150 KEG-----------PGLDELKPLL 162 (298)
T ss_pred CCC-----------CCHHHHHHHH
T ss_conf 999-----------8999999985
No 312
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.29 E-value=0.0015 Score=42.46 Aligned_cols=63 Identities=21% Similarity=0.210 Sum_probs=43.2
Q ss_pred HHHHHHHHHHCEEEEEEECCCCCCHHHHH---HHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999987421789999768788647899---99999972997899997543667402568999998886
Q gi|254780233|r 97 GEVERILCMVESVVVLVDAAEGPMPQTKF---VVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLFS 163 (624)
Q Consensus 97 gEVer~l~~~DgaiLvVdA~eGv~~QT~~---vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~ 163 (624)
.++++++..+|-+|.|+||..+..+.-.. .+++ ...+.|.|+++||+|.-. .+..+...+.|.
T Consensus 3 rq~~~~ie~aDvVleV~DaR~p~~s~~~~l~~~l~~-~~~~Kp~ilVlNK~DL~~---~~~~~~w~~~~~ 68 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKE-VDPRKKNILLLNKADLLT---EEQRKAWAEYFK 68 (141)
T ss_pred HHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHH-HCCCCCEEEEEECCCCCC---HHHHHHHHHHHH
T ss_conf 899999976999999998988887689999999998-438995799986500499---999999999998
No 313
>PRK01889 ribosome-associated GTPase; Reviewed
Probab=97.27 E-value=0.00043 Score=46.06 Aligned_cols=81 Identities=23% Similarity=0.303 Sum_probs=52.1
Q ss_pred HHHCEEEEEEECCCCCCHH-HHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHH
Q ss_conf 7421789999768788647-899999999729978999975436674025689999988862267301104266887886
Q gi|254780233|r 104 CMVESVVVLVDAAEGPMPQ-TKFVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFPILYGSGR 182 (624)
Q Consensus 104 ~~~DgaiLvVdA~eGv~~Q-T~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~Pv~~~Sa~ 182 (624)
.-+|-+++|..+..-.-+. -.+-|-.|.+.|+++++++||+|.-+ +.++...++..+ . ..+||+..|++
T Consensus 110 ANiD~v~IV~s~~~~fn~~rieRyLv~a~~~g~~pvivLnK~DL~~-d~~~~~~~~~~~----~-----~g~~v~~vSa~ 179 (353)
T PRK01889 110 ANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVVVLTKADLCE-DVEEKIAEVEAL----A-----PGVPVLAVNAL 179 (353)
T ss_pred ECCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCC-CHHHHHHHHHHH----C-----CCCEEEEEECC
T ss_conf 7176899995289997978999999999986996799996655667-999999999985----5-----99759999789
Q ss_pred CCEECCCCCCCCCCCCHHHHHHH
Q ss_conf 59164674223348641355532
Q gi|254780233|r 183 FGWMSDSSDGSRDQGMVPLLNLI 205 (624)
Q Consensus 183 ~G~~~~~~~~~~~~gl~~Lld~I 205 (624)
+| .|++.|...+
T Consensus 180 ~~-----------~gl~~L~~~l 191 (353)
T PRK01889 180 DG-----------EGVDALQAWL 191 (353)
T ss_pred CC-----------CCHHHHHHHH
T ss_conf 98-----------4789999986
No 314
>KOG0088 consensus
Probab=97.19 E-value=0.00096 Score=43.79 Aligned_cols=148 Identities=18% Similarity=0.148 Sum_probs=83.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHH
Q ss_conf 49998546898778899999983961423220000038857798709606467999998997999972898754079999
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVE 100 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVe 100 (624)
-++++|..=-|||+|+=+... ..|+ +.+---- .-+-.++..+++-....++|.||-|..-|-
T Consensus 15 K~VLLGEGCVGKtSLVLRy~E--nkFn----------~kHlsTl--QASF~~kk~n~ed~ra~L~IWDTAGQErfH---- 76 (218)
T KOG0088 15 KIVLLGEGCVGKTSLVLRYVE--NKFN----------CKHLSTL--QASFQNKKVNVEDCRADLHIWDTAGQERFH---- 76 (218)
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHCC----------HHHHHHH--HHHHHHCCCCCCCCEEEEEEEECCCHHHHH----
T ss_conf 899974875560689999987--2323----------0467899--988763304621113114321244457652----
Q ss_pred HHH-----HHHCEEEEEEECCCCCCHHHHHHHHHHH----HCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 998-----7421789999768788647899999999----7299789999754366740256899999888622673011
Q gi|254780233|r 101 RIL-----CMVESVVVLVDAAEGPMPQTKFVVGKAL----KIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQ 171 (624)
Q Consensus 101 r~l-----~~~DgaiLvVdA~eGv~~QT~~vl~~A~----~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ 171 (624)
+| +-.+|||||-|-++----|--..|-+-+ -.-+..++|=||+|.+..|.- ..++....-...||
T Consensus 77 -ALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~V-t~qeAe~YAesvGA---- 150 (218)
T KOG0088 77 -ALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQV-TRQEAEAYAESVGA---- 150 (218)
T ss_pred -CCCCEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHH-HHHHHHHHHHHHCH----
T ss_conf -357537707996289986444688999999999999871883599995374467886420-29889999986333----
Q ss_pred CCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHH
Q ss_conf 04266887886591646742233486413555321
Q gi|254780233|r 172 LDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIV 206 (624)
Q Consensus 172 ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii 206 (624)
..+..||++ +.|+..||+.+.
T Consensus 151 ---~y~eTSAk~-----------N~Gi~elFe~Lt 171 (218)
T KOG0088 151 ---LYMETSAKD-----------NVGISELFESLT 171 (218)
T ss_pred ---HHEECCCCC-----------CCCHHHHHHHHH
T ss_conf ---431111102-----------437999999999
No 315
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.19 E-value=0.0012 Score=43.18 Aligned_cols=97 Identities=20% Similarity=0.292 Sum_probs=62.7
Q ss_pred CCCCC-CHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 98754-07999999874217899997687886478999999997299789999754366740256899999888622673
Q gi|254780233|r 90 PGHAD-FGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDAT 168 (624)
Q Consensus 90 PGH~D-F~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~ 168 (624)
|||-- -.-+..+.+..+|.+|-|+||....-.+-.. +.+.. .+.|.|+++||+|.-. .+..++..+.|...+
T Consensus 5 PGHm~ka~~~l~~~l~~~DvileV~DAR~Pl~~~n~~-l~~~~-~~K~~ilvlNK~DL~~---~~~~~~w~~~~~~~~-- 77 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPM-IDEIR-GNKPRLIVLNKADLAD---PAVTKQWLKYFEQKG-- 77 (276)
T ss_pred HHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHH-HHHHH-CCCCEEEEEECCCCCC---HHHHHHHHHHHHHCC--
T ss_conf 5889999999999987599999998677887868975-99986-6996799973434599---999999999998439--
Q ss_pred HHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 01104266887886591646742233486413555321024
Q gi|254780233|r 169 DAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 169 de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
.++++.||+++ .++..|.+.+.+..
T Consensus 78 -----~~~~~~sa~~~-----------~~~~~l~~~~~~~~ 102 (276)
T TIGR03596 78 -----IKALAINAKKG-----------KGVKKIIKAAKKLL 102 (276)
T ss_pred -----CCEEEEHHCCC-----------CCHHHHHHHHHHHH
T ss_conf -----91898643074-----------53899999999999
No 316
>KOG1954 consensus
Probab=97.19 E-value=0.0084 Score=37.59 Aligned_cols=125 Identities=26% Similarity=0.309 Sum_probs=77.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCC--CCCE---ECCCCHHHHHCCCEEEEEEEEEEE-----------------
Q ss_conf 999854689877889999998396142322--0000---038857798709606467999998-----------------
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQR--VSER---VMDCNDLEKERGITILAKVTSIVW----------------- 79 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~--v~~~---vmD~~~~EreRGITI~a~~~~~~~----------------- 79 (624)
|-++|.---||||....||.+.=.-.+.|. ..++ +|-.++++---|-+... .....+
T Consensus 61 ill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~v-d~~~pF~gL~~FG~aflnRf~cs 139 (532)
T KOG1954 61 ILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVV-DAKKPFRGLNKFGNAFLNRFMCS 139 (532)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEE-CCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 89972466660399999871778755468999753068998558656667862564-68775165666679999988773
Q ss_pred --CC---EEEEEECCCCC-----------CCCHHHHHHHHHHHCEEEEEEECCC-CCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf --99---79999728987-----------5407999999874217899997687-8864789999999972997899997
Q gi|254780233|r 80 --ND---VRINIVDTPGH-----------ADFGGEVERILCMVESVVVLVDAAE-GPMPQTKFVVGKALKIGLRPIVVVN 142 (624)
Q Consensus 80 --~~---~~iNiiDTPGH-----------~DF~gEVer~l~~~DgaiLvVdA~e-Gv~~QT~~vl~~A~~~~l~~IvvIN 142 (624)
.+ -+||||||||- -||.+-.+--..-||-.+||.||.. -+-+.+++++....-..-++=|++|
T Consensus 140 qmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~EdkiRVVLN 219 (532)
T KOG1954 140 QLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHEDKIRVVLN 219 (532)
T ss_pred CCCHHHHHHEEEECCCCCCCCCHHCCCCCCCHHHHHHHHHHHCCEEEEEECHHHCCCCHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 38756550044423675320122201236780889999997456899972466456667899999986188640688830
Q ss_pred CCCCC
Q ss_conf 54366
Q gi|254780233|r 143 KVDRS 147 (624)
Q Consensus 143 KiDr~ 147 (624)
|-|.-
T Consensus 220 KADqV 224 (532)
T KOG1954 220 KADQV 224 (532)
T ss_pred CCCCC
T ss_conf 32443
No 317
>KOG2655 consensus
Probab=97.17 E-value=0.0012 Score=43.03 Aligned_cols=120 Identities=20% Similarity=0.310 Sum_probs=70.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEE--EEEECCCCCCCCHHH
Q ss_conf 499985468987788999999839614232200000388577987096064679999989979--999728987540799
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVR--INIVDTPGHADFGGE 98 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~--iNiiDTPGH~DF~gE 98 (624)
|+-++|-.+-|||||+..|+-+ . +. .++-.+....+..+..+|.+...-++=+|.+ +|+|||||..||.--
T Consensus 23 tlmvvG~sGlGKsTfiNsLf~~-~-l~-----~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdn 95 (366)
T KOG2655 23 TLMVVGESGLGKSTFINSLFLT-D-LS-----GNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDN 95 (366)
T ss_pred EEEEECCCCCCHHHHHHHHHHH-H-CC-----CCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEECCCCCCCCCCC
T ss_conf 8998558876388999888865-3-25-----776667755676553113223237637974887678436998654465
Q ss_pred H--------------HHHH---------HH----HCEEEEEEECC-CCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf 9--------------9998---------74----21789999768-78864789999999972997899997543667
Q gi|254780233|r 99 V--------------ERIL---------CM----VESVVVLVDAA-EGPMPQTKFVVGKALKIGLRPIVVVNKVDRSD 148 (624)
Q Consensus 99 V--------------er~l---------~~----~DgaiLvVdA~-eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~ 148 (624)
- +..| +. +.++|-.+.-. .|..|.--. +.+.+...+.+|.+|-|-|--.
T Consensus 96 s~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~-~Mk~l~~~vNiIPVI~KaD~lT 172 (366)
T KOG2655 96 SNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIE-FMKKLSKKVNLIPVIAKADTLT 172 (366)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHH-HHHHHHCCCCCCCEEECCCCCC
T ss_conf 1243235678999999998602368865566884489999837888888686699-9997732566103164056689
No 318
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.16 E-value=0.00081 Score=44.27 Aligned_cols=84 Identities=18% Similarity=0.162 Sum_probs=49.4
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHH-CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHCCE
Q ss_conf 17899997687886478999999997-29978999975436674025689999988862267301104266887886591
Q gi|254780233|r 107 ESVVVLVDAAEGPMPQTKFVVGKALK-IGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFPILYGSGRFGW 185 (624)
Q Consensus 107 DgaiLvVdA~eGv~~QT~~vl~~A~~-~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~Pv~~~Sa~~G~ 185 (624)
|.+|.||||..|.-+.-......... .+.|.|+++||+|.-+ .++.++....|..+.. ..+++.|+.++
T Consensus 1 D~il~VvDaR~pl~~~~~~~~~~l~~~~~K~~ilvlNK~Dl~~---~~~~~~w~~~~~~~~~------~~~~~~S~~~~- 70 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVP---KEVLRKWLAYLRHSYP------TIPFKISATNG- 70 (155)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCC---HHHHHHHHHHHHHCCC------CCEEEHHHCCC-
T ss_conf 9899999687999988999999998658994899976734589---8999999999996299------85167110267-
Q ss_pred ECCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 6467422334864135553210245
Q gi|254780233|r 186 MSDSSDGSRDQGMVPLLNLIVDHVP 210 (624)
Q Consensus 186 ~~~~~~~~~~~gl~~Lld~Ii~~iP 210 (624)
.+...+.+.+.....
T Consensus 71 ----------~~~~~~~~~~~~~~~ 85 (155)
T cd01849 71 ----------QGIEKKESAFTKQTN 85 (155)
T ss_pred ----------CCHHHHHHHHHHHHH
T ss_conf ----------456889999998715
No 319
>PRK12288 ribosome-associated GTPase; Reviewed
Probab=97.15 E-value=0.00057 Score=45.28 Aligned_cols=77 Identities=16% Similarity=0.125 Sum_probs=32.7
Q ss_pred HHHHHHHCCCEECCCCCCCCCEEEEEEEECHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf 89988743540104213689849999996133565688998853276167888870530135787877742588828985
Q gi|254780233|r 430 VVQKMTLHKSEMIELRPSGTGRVRLVFLSPTRGLIGYQSQLMTDTRGTAIMNRLFHSYQPHKGEIGGRSNGVLLSNEEGK 509 (624)
Q Consensus 430 Vi~~l~~RrG~i~~m~~~~~g~~~l~~~vP~r~l~g~~~~l~s~T~G~g~~~~~f~~Y~p~~g~i~~r~~G~lis~~~G~ 509 (624)
....|..+--.+.+..-.|. .+.|.+.+|.. ..++.=.|...|+|-.+..+...-+.++ |..+.+.+|
T Consensus 201 L~~~L~~ktsvf~GqSGVGK-SSLiN~L~p~~---~~~tgeIS~~~~~GrHTTt~~~L~~l~~-------gG~lIDTPG- 268 (344)
T PRK12288 201 LEAALTGRISIFVGQSGVGK-SSLINALLPEA---EILVGDVSENSGLGQHTTTTARLYHFPH-------GGDLIDSPG- 268 (344)
T ss_pred HHHHHCCCEEEEEECCCCCH-HHHHHHCCCHH---HHHHHHHHHHCCCCCCEEEEEEEEECCC-------CCEEEECCC-
T ss_conf 99987678599980687678-88876107533---4223201433388664011689999289-------987973898-
Q ss_pred EEEEHHHHH
Q ss_conf 830033312
Q gi|254780233|r 510 VVAYALFNL 518 (624)
Q Consensus 510 ~~~yal~~l 518 (624)
...|+|+++
T Consensus 269 ~ref~L~~i 277 (344)
T PRK12288 269 VREFGLWHL 277 (344)
T ss_pred CCCCCCCCC
T ss_conf 765577778
No 320
>KOG0071 consensus
Probab=97.14 E-value=0.0067 Score=38.26 Aligned_cols=139 Identities=17% Similarity=0.257 Sum_probs=78.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHHH
Q ss_conf 99985468987788999999839614232200000388577987096064679999989979999728987540799999
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVER 101 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVer 101 (624)
|..+|--.+||||+.-.|--..-.. .+ .+ -|..| -++.|++.++|.-|.-|.-...-=-.+
T Consensus 20 ilmlGLd~aGKTtiLyKLkl~~~~~----~i-pT----------vGFnv----etVtykN~kfNvwdvGGqd~iRplWrh 80 (180)
T KOG0071 20 ILMLGLDAAGKTTILYKLKLGQSVT----TI-PT----------VGFNV----ETVTYKNVKFNVWDVGGQDKIRPLWRH 80 (180)
T ss_pred EEEEECCCCCCEEHHHHHHCCCCCC----CC-CC----------CCEEE----EEEEEEEEEEEEEECCCCHHHHHHHHH
T ss_conf 7888126688400346876289764----03-55----------42047----777730068852122671220488986
Q ss_pred HHHHHCEEEEEEECCCCCCH-HHHHHHHHHH----HCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHH
Q ss_conf 98742178999976878864-7899999999----729978999975436674025689999988862267301104266
Q gi|254780233|r 102 ILCMVESVVVLVDAAEGPMP-QTKFVVGKAL----KIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFPI 176 (624)
Q Consensus 102 ~l~~~DgaiLvVdA~eGv~~-QT~~vl~~A~----~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~Pv 176 (624)
--....|.|+|+|+++--.. ..|.-+..++ -..++.+|+-||-|+|+|+- ..||.|.| +|..--.+ .+-+
T Consensus 81 Yy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~---pqei~d~l-eLe~~r~~-~W~v 155 (180)
T KOG0071 81 YYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMK---PQEIQDKL-ELERIRDR-NWYV 155 (180)
T ss_pred HCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCHHHHCCEEEEEECCCCCCCCCC---HHHHHHHH-CCCCCCCC-CCEE
T ss_conf 3567725999982432104999999999985787661205898854665522169---89988875-42312699-6066
Q ss_pred HHHHHHCC
Q ss_conf 88788659
Q gi|254780233|r 177 LYGSGRFG 184 (624)
Q Consensus 177 ~~~Sa~~G 184 (624)
.+++|..|
T Consensus 156 qp~~a~~g 163 (180)
T KOG0071 156 QPSCALSG 163 (180)
T ss_pred ECCCCCCH
T ss_conf 03534440
No 321
>KOG0086 consensus
Probab=97.12 E-value=0.0042 Score=39.60 Aligned_cols=117 Identities=18% Similarity=0.251 Sum_probs=74.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHH
Q ss_conf 14999854689877889999998396142322000003885779870960646799999899799997289875407999
Q gi|254780233|r 20 RNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEV 99 (624)
Q Consensus 20 RNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEV 99 (624)
=.|.+||..+.||+-|.-+.... .+++. +. .--||--.|+.+++--+..|+.|.||-|..-|-.-.
T Consensus 10 fKfl~iG~aGtGKSCLLh~Fie~--kfkDd--ss----------HTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVt 75 (214)
T KOG0086 10 FKFLVIGSAGTGKSCLLHQFIEN--KFKDD--SS----------HTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVT 75 (214)
T ss_pred HEEEEECCCCCCHHHHHHHHHHH--HCCCC--CC----------CEEEEEECCCEEEECCCEEEEEEEECCCHHHHHHHH
T ss_conf 02688646888632799999986--41365--46----------442022011025405718999986342578899999
Q ss_pred HHHHHHHCEEEEEEECCCCCCHHHHHHHH-HHHHC---CCCEEEEEECCCCCCCC
Q ss_conf 99987421789999768788647899999-99972---99789999754366740
Q gi|254780233|r 100 ERILCMVESVVVLVDAAEGPMPQTKFVVG-KALKI---GLRPIVVVNKVDRSDAR 150 (624)
Q Consensus 100 er~l~~~DgaiLvVdA~eGv~~QT~~vl~-~A~~~---~l~~IvvINKiDr~~a~ 150 (624)
..--+-+.||+||-|++.----.....|- -|..+ ++-+|++-||-|.+++|
T Consensus 76 RsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R 130 (214)
T KOG0086 76 RSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPER 130 (214)
T ss_pred HHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHCCHHH
T ss_conf 9875365642799852455569999998887776479967999937712144121
No 322
>KOG0077 consensus
Probab=97.11 E-value=0.0072 Score=38.02 Aligned_cols=115 Identities=21% Similarity=0.242 Sum_probs=64.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHH
Q ss_conf 31499985468987788999999839614232200000388577987096064679999989979999728987540799
Q gi|254780233|r 19 IRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGE 98 (624)
Q Consensus 19 IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gE 98 (624)
---+...|--.+|||||.-.| +.--. .+.+.. +--..+| + .-.+-+++-+|--||.-=.--
T Consensus 20 ~gKllFlGLDNAGKTTLLHML-KdDrl---~qhvPT--lHPTSE~----l---------~Ig~m~ftt~DLGGH~qArr~ 80 (193)
T KOG0077 20 FGKLLFLGLDNAGKTTLLHML-KDDRL---GQHVPT--LHPTSEE----L---------SIGGMTFTTFDLGGHLQARRV 80 (193)
T ss_pred CCEEEEEEECCCCHHHHHHHH-CCCCC---CCCCCC--CCCCHHH----H---------EECCCEEEEECCCCHHHHHHH
T ss_conf 751899951577526689887-33001---135787--6897677----3---------135715899725667999988
Q ss_pred HHHHHHHHCEEEEEEECCCCCCHHH-HH----HHHHHHHCCCCEEEEEECCCCCCCCHH
Q ss_conf 9999874217899997687886478-99----999999729978999975436674025
Q gi|254780233|r 99 VERILCMVESVVVLVDAAEGPMPQT-KF----VVGKALKIGLRPIVVVNKVDRSDARAD 152 (624)
Q Consensus 99 Ver~l~~~DgaiLvVdA~eGv~~QT-~~----vl~~A~~~~l~~IvvINKiDr~~a~~~ 152 (624)
-.--...||+.+.+|||.+--.-|- +. ++....-..+|.++..||+|+++|--+
T Consensus 81 wkdyf~~v~~iv~lvda~d~er~~es~~el~~ll~~e~la~vp~lilgnKId~~~a~se 139 (193)
T KOG0077 81 WKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASE 139 (193)
T ss_pred HHHHHHHHCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCH
T ss_conf 88787654316853011217776778999998876887715861011165568873337
No 323
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.08 E-value=0.002 Score=41.73 Aligned_cols=80 Identities=24% Similarity=0.479 Sum_probs=53.0
Q ss_pred HCEEEEEEECCCCCCHHHH---HHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHH
Q ss_conf 2178999976878864789---9999999729978999975436674025689999988862267301104266887886
Q gi|254780233|r 106 VESVVVLVDAAEGPMPQTK---FVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFPILYGSGR 182 (624)
Q Consensus 106 ~DgaiLvVdA~eGv~~QT~---~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~Pv~~~Sa~ 182 (624)
+|-+++||++.+... -+. +.|-.|...|+.+++++||+|.-+...... ++...... ++-+++++.|++
T Consensus 80 ~d~~iiIvs~~~P~~-~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~-~~~~~~y~-------~~gy~v~~~s~~ 150 (301)
T COG1162 80 NDQAIIVVSLVDPDF-NTNLLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAV-KELLREYE-------DIGYPVLFVSAK 150 (301)
T ss_pred CCEEEEEEECCCCCC-CHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHH-HHHHHHHH-------HCCEEEEEECCC
T ss_conf 551999996268998-988999999999776995799997533676167789-99999998-------679359995376
Q ss_pred CCEECCCCCCCCCCCCHHHHHHH
Q ss_conf 59164674223348641355532
Q gi|254780233|r 183 FGWMSDSSDGSRDQGMVPLLNLI 205 (624)
Q Consensus 183 ~G~~~~~~~~~~~~gl~~Lld~I 205 (624)
++ .++..|.+.+
T Consensus 151 ~~-----------~~~~~l~~~l 162 (301)
T COG1162 151 NG-----------DGLEELAELL 162 (301)
T ss_pred CC-----------CCHHHHHHHH
T ss_conf 76-----------5589999975
No 324
>PHA02518 ParA-like protein; Provisional
Probab=97.06 E-value=0.0079 Score=37.77 Aligned_cols=121 Identities=17% Similarity=0.213 Sum_probs=62.2
Q ss_pred EEEEECC-CCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHH--------HHHCCCEEEEEEEEE----------EECC
Q ss_conf 4999854-68987788999999839614232200000388577--------987096064679999----------9899
Q gi|254780233|r 21 NIAIIAH-VDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDL--------EKERGITILAKVTSI----------VWND 81 (624)
Q Consensus 21 NiaIiaH-vDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~--------EreRGITI~a~~~~~----------~~~~ 81 (624)
=|+|+.+ .+.||||++=.|-. .+.+.|. .=-+.|.+++ .|+.+-.... ...+ .-.+
T Consensus 2 IIav~n~KGGvGKTT~a~nLA~---~la~~G~-~VlliD~DpQ~s~~~w~~~r~~~~~~~~-~~~~~~~~~~~l~~~~~~ 76 (211)
T PHA02518 2 IIAVLNQKGGAGKTTVATNLAS---WLHADGH-KVLLVDLDPQGSSTDWAEAREEGEPLIP-VVRMGKSIRADLPKVASG 76 (211)
T ss_pred EEEEEECCCCCHHHHHHHHHHH---HHHHCCC-CEEEEECCCCCCHHHHHHHCCCCCCCCC-HHHCCHHHHHHHHHHCCC
T ss_conf 8999808999749999999999---9997899-4899977999678899985226899740-121367799999974067
Q ss_pred EEEEEECCCCCCCCHHHHHHHHHHHCEEEEEEECCC-CC--CHHHHHHHHHHH--HCCCCEEEEEECC-CCCC
Q ss_conf 799997289875407999999874217899997687-88--647899999999--7299789999754-3667
Q gi|254780233|r 82 VRINIVDTPGHADFGGEVERILCMVESVVVLVDAAE-GP--MPQTKFVVGKAL--KIGLRPIVVVNKV-DRSD 148 (624)
Q Consensus 82 ~~iNiiDTPGH~DF~gEVer~l~~~DgaiLvVdA~e-Gv--~~QT~~vl~~A~--~~~l~~IvvINKi-Dr~~ 148 (624)
|-+-||||||+. +.....+|.++|.+|+-+.... .. ..++...++.+. ..+++...+++.+ ++..
T Consensus 77 yD~viID~pp~~--~~~~~~al~aaD~vliP~~ps~~d~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~ 147 (211)
T PHA02518 77 YDYVVVDGAPQD--SELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFIISRAIKNT 147 (211)
T ss_pred CCEEEECCCCCC--HHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCC
T ss_conf 888998899974--29999999958969996378687899999999999999986656751688862358665
No 325
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.04 E-value=0.00069 Score=44.71 Aligned_cols=80 Identities=26% Similarity=0.389 Sum_probs=51.5
Q ss_pred HHHCEEEEEEECCCCCCHHH---HHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHHH
Q ss_conf 74217899997687886478---999999997299789999754366740256899999888622673011042668878
Q gi|254780233|r 104 CMVESVVVLVDAAEGPMPQT---KFVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFPILYGS 180 (624)
Q Consensus 104 ~~~DgaiLvVdA~eGv~~QT---~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~Pv~~~S 180 (624)
.-+|-+++|+.+.+ |.+.. .+.|-.|...++++++++||+|..+.. +.... ... -..+.+|+++.|
T Consensus 77 ANiD~v~IV~s~~~-p~~~~~~idR~Lv~a~~~~i~pvivlnK~DL~~~~--~~~~~-~~~-------~~~~gy~v~~~S 145 (287)
T cd01854 77 ANVDQLVIVVSLNE-PFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLDDE--EEELE-LVE-------ALALGYPVLAVS 145 (287)
T ss_pred ECCCEEEEEECCCC-CCCCHHHHHHHHHHHHHCCCCEEEEEECHHCCCCH--HHHHH-HHH-------HHCCCCEEEEEE
T ss_conf 72668999952689-98998999999999997799689999862219948--99999-999-------872998499996
Q ss_pred HHCCEECCCCCCCCCCCCHHHHHHH
Q ss_conf 8659164674223348641355532
Q gi|254780233|r 181 GRFGWMSDSSDGSRDQGMVPLLNLI 205 (624)
Q Consensus 181 a~~G~~~~~~~~~~~~gl~~Lld~I 205 (624)
++++ .|+++|.+.+
T Consensus 146 ~~~~-----------~g~~~L~~~l 159 (287)
T cd01854 146 AKTG-----------EGLDELREYL 159 (287)
T ss_pred CCCC-----------CCHHHHHHHH
T ss_conf 6898-----------5889999874
No 326
>PRK00098 ribosome-associated GTPase; Reviewed
Probab=97.03 E-value=0.0008 Score=44.31 Aligned_cols=76 Identities=16% Similarity=0.177 Sum_probs=31.0
Q ss_pred HHHHHHHCCCEECCCCCCCCCEEEEEEEECHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf 89988743540104213689849999996133565688998853276167888870530135787877742588828985
Q gi|254780233|r 430 VVQKMTLHKSEMIELRPSGTGRVRLVFLSPTRGLIGYQSQLMTDTRGTAIMNRLFHSYQPHKGEIGGRSNGVLLSNEEGK 509 (624)
Q Consensus 430 Vi~~l~~RrG~i~~m~~~~~g~~~l~~~vP~r~l~g~~~~l~s~T~G~g~~~~~f~~Y~p~~g~i~~r~~G~lis~~~G~ 509 (624)
..+.|..+-..+.+..-.|. .+.|-+..|...+ ++.=.|...|+|-.+......=+.+ +| .|.+.+|
T Consensus 158 L~~~l~~k~sv~~G~SGVGK-SSLiN~L~~~~~~---~t~~is~~~~rGrHTTt~~~l~~l~-------~G-~iiDTPG- 224 (298)
T PRK00098 158 LKPLLAGKVTVLAGQSGVGK-STLLNALVPELEL---KTGEISEALGRGKHTTTHVELYDLP-------GG-LLIDTPG- 224 (298)
T ss_pred HHHHHCCCEEEEECCCCCCH-HHHHHHHCCHHHH---HHHHHHHHCCCCCEEEEEEEEEECC-------CC-EEEECCC-
T ss_conf 99985798699987898878-8888760714445---6675566518972133046899869-------97-5981898-
Q ss_pred EEEEHHHHH
Q ss_conf 830033312
Q gi|254780233|r 510 VVAYALFNL 518 (624)
Q Consensus 510 ~~~yal~~l 518 (624)
.-.++|+++
T Consensus 225 ~r~~~l~~~ 233 (298)
T PRK00098 225 FSSFGLEHL 233 (298)
T ss_pred CCCCCCCCC
T ss_conf 775566779
No 327
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.02 E-value=0.0011 Score=43.27 Aligned_cols=53 Identities=21% Similarity=0.396 Sum_probs=33.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCC
Q ss_conf 49998546898778899999983961423220000038857798709606467999998997999972898
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPG 91 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPG 91 (624)
.++|+|+-..|||||+-+|+....+ .+. ..-|.|-... .+.. +.++.|+||||
T Consensus 103 ~v~ivG~PNVGKSTLIN~L~~~~~~-----~v~----------~~pGtTr~~~--~i~~-~~~~~liDTpG 155 (156)
T cd01859 103 KVGVVGYPNVGKSSIINALKGRHSA-----STS----------PSPGYTKGEQ--LVKI-TSKIYLLDTPG 155 (156)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCEE-----EEC----------CCCCEECCEE--EEEE-CCCEEEEECCC
T ss_conf 8999814784598999997488137-----775----------9998070559--9997-99889998909
No 328
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.01 E-value=0.0014 Score=42.64 Aligned_cols=114 Identities=32% Similarity=0.404 Sum_probs=68.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCC-CCC----C---EE-----C-CCCHHH---HHCCCEEEEEEEE--------
Q ss_conf 99985468987788999999839614232-200----0---00-----3-885779---8709606467999--------
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQ-RVS----E---RV-----M-DCNDLE---KERGITILAKVTS-------- 76 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~-~v~----~---~v-----m-D~~~~E---reRGITI~a~~~~-------- 76 (624)
|+|-|-.++|||||+|+|...- ++.+ ++. | +. + |.--.+ +.-++=|-|-.+.
T Consensus 2 iGitG~pGaGKStLi~~l~~~~---~~~g~~VaVlavDPsS~~sgGalLGDRiRm~~~~~~~~vfiRs~atrg~~ggla~ 78 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITAL---RARGKRVAVLAIDPSSPFSGGAILGDRIRMERHASDPGVFIRSLATRGFLGGLSR 78 (148)
T ss_pred EEECCCCCCCHHHHHHHHHHHH---HHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHH
T ss_conf 7625899787899999999999---9789837999968887866862032354534415799836863466665420468
Q ss_pred --------EEECCEEEEEECCCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf --------998997999972898754079999998742178999976878864789999999972997899997543
Q gi|254780233|r 77 --------IVWNDVRINIVDTPGHADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVD 145 (624)
Q Consensus 77 --------~~~~~~~iNiiDTPGH~DF~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiD 145 (624)
++..++-+-||.|-|- =..|++ +..++|..++|++...|=..|.+ |+--..+.=+++|||.|
T Consensus 79 ~~~~~i~~l~~~g~D~IiIETvGv--GQse~~-i~~~aD~~i~v~~p~~GD~iQ~~----K~gi~e~aDl~vvNK~D 148 (148)
T cd03114 79 ATPEVIRVLDAAGFDVIIVETVGV--GQSEVD-IASMADTTVVVMAPGAGDDIQAI----KAGIMEIADIVVVNKAD 148 (148)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCC--CCCHHH-HHHHCCEEEEEECCCCCCHHHHC----CCCHHHCCCEEEEECCC
T ss_conf 899999999975999899974877--756026-55435669999636887377611----22852124699993789
No 329
>PRK09563 rbgA ribosomal biogenesis GTPase; Reviewed
Probab=97.00 E-value=0.0015 Score=42.43 Aligned_cols=97 Identities=24% Similarity=0.294 Sum_probs=62.6
Q ss_pred CCCCC-CHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 98754-07999999874217899997687886478999999997299789999754366740256899999888622673
Q gi|254780233|r 90 PGHAD-FGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDAT 168 (624)
Q Consensus 90 PGH~D-F~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~ 168 (624)
|||-- -.-+..+.+..+|.+|-|+||....-..-.. +.+.. .+.|.|+++||+|.-+ .+..++..+.|.+.
T Consensus 8 PGHm~ka~r~l~~~l~~~DvileV~DAR~Pl~~~n~~-l~~~~-~~K~~ilvlNK~DL~~---~~~~~~w~~~~~~~--- 79 (282)
T PRK09563 8 PGHMAKARREIKENLKKVDVVIEVLDARIPLSSENPM-IDKII-GNKPRLLVLNKSDLAD---PEVTKKWIEYFEEQ--- 79 (282)
T ss_pred HHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHH-HHHHH-CCCCEEEEEECCCCCC---HHHHHHHHHHHHHC---
T ss_conf 8899999999999987699999997654776758875-99997-6897699975554889---99999999999704---
Q ss_pred HHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 01104266887886591646742233486413555321024
Q gi|254780233|r 169 DAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 169 de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
..++++.|++++ .+...|++.+.+..
T Consensus 80 ----~~~~~~~sa~~~-----------~~~~~l~~~~~~~~ 105 (282)
T PRK09563 80 ----GVKALAINAKEG-----------QGVKKILKAAKKLG 105 (282)
T ss_pred ----CCCEEEEECCCC-----------CCHHHHHHHHHHHH
T ss_conf ----995699746674-----------33889999999999
No 330
>KOG0072 consensus
Probab=96.97 E-value=0.00087 Score=44.05 Aligned_cols=161 Identities=21% Similarity=0.253 Sum_probs=90.5
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCC
Q ss_conf 68024314999854689877889999998396142322000003885779870960646799999899799997289875
Q gi|254780233|r 14 LGYMQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHA 93 (624)
Q Consensus 14 ~~~~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~ 93 (624)
..+++=-.|-|++-.++||||..=++ ++| .+..+ -=||.-....+.|++.++++-|--|.-
T Consensus 13 ~g~e~e~rililgldGaGkttIlyrl--qvg------evvtt-----------kPtigfnve~v~yKNLk~~vwdLggqt 73 (182)
T KOG0072 13 QGPEREMRILILGLDGAGKTTILYRL--QVG------EVVTT-----------KPTIGFNVETVPYKNLKFQVWDLGGQT 73 (182)
T ss_pred CCCCCCEEEEEEECCCCCEEEEEEEC--CCC------CCCCC-----------CCCCCCCCCCCCCCCCCCEEEECCCCC
T ss_conf 08761017898503677706999871--258------64345-----------899886802155366551246715864
Q ss_pred CCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHH-----HHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 407999999874217899997687886478999-----999997299789999754366740256899999888622673
Q gi|254780233|r 94 DFGGEVERILCMVESVVVLVDAAEGPMPQTKFV-----VGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDAT 168 (624)
Q Consensus 94 DF~gEVer~l~~~DgaiLvVdA~eGv~~QT~~v-----l~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~ 168 (624)
.-.-=-..--.-+|.++.|||..+-.+..+-.+ |+.-.-++-..+||.||+|-+.+- ..+|+.- ...+.+-
T Consensus 74 SirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~---t~~E~~~-~L~l~~L 149 (182)
T KOG0072 74 SIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGAL---TRSEVLK-MLGLQKL 149 (182)
T ss_pred CCCHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEECCCCCHHHH---HHHHHHH-HHCHHHH
T ss_conf 33277888760666289997165434431468999998554865484699986045521355---6999999-8482887
Q ss_pred HHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 01104266887886591646742233486413555321024
Q gi|254780233|r 169 DAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 169 de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
..+. +.++.+||..| .|++|.+|.+.+.+
T Consensus 150 k~r~-~~Iv~tSA~kg-----------~Gld~~~DWL~~~l 178 (182)
T KOG0072 150 KDRI-WQIVKTSAVKG-----------EGLDPAMDWLQRPL 178 (182)
T ss_pred HHHE-EEEEEECCCCC-----------CCCCHHHHHHHHHH
T ss_conf 5022-68876011446-----------67767899998777
No 331
>pfam03193 DUF258 Protein of unknown function, DUF258.
Probab=96.96 E-value=0.0011 Score=43.51 Aligned_cols=64 Identities=25% Similarity=0.388 Sum_probs=36.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCC--EEEEEEEEEEECCEEEEEECCCCCCCCH
Q ss_conf 1499985468987788999999839614232200000388577987096--0646799999899799997289875407
Q gi|254780233|r 20 RNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGI--TILAKVTSIVWNDVRINIVDTPGHADFG 96 (624)
Q Consensus 20 RNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGI--TI~a~~~~~~~~~~~iNiiDTPGH~DF~ 96 (624)
+..+++||.+.|||||+.+|+-... -+-+.+.+ . -.||- |-.+.. +.+.+ ---||||||..+|+
T Consensus 36 k~sv~~G~SGVGKSTLiN~L~~~~~--~~t~~iS~------~--~~rGkHTTt~~~l--~~l~~-gg~iiDTPG~r~f~ 101 (161)
T pfam03193 36 KTSVLAGQSGVGKSTLLNALLPELD--LRTGEISE------K--LGRGRHTTTHVEL--FPLPG-GGLLIDTPGFRELG 101 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHCCHHH--HHHHHHHH------H--HCCCCCEEEEEEE--EEECC-CCEEEECCCCCCCC
T ss_conf 8599988999889999988563443--57775358------8--6388511211379--98079-95898589876257
No 332
>KOG0079 consensus
Probab=96.95 E-value=0.013 Score=36.34 Aligned_cols=159 Identities=18% Similarity=0.270 Sum_probs=92.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHH
Q ss_conf 43149998546898778899999983961423220000038857798709606467999998997999972898754079
Q gi|254780233|r 18 QIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGG 97 (624)
Q Consensus 18 ~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~g 97 (624)
++--..|||..+-|||+|.-+. ...+|...=.. .. |+-..-+.+.+.-...++-|.||-|..-|..
T Consensus 7 hLfkllIigDsgVGKssLl~rF--~ddtFs~sYit-Ti-----------GvDfkirTv~i~G~~VkLqIwDtAGqErFrt 72 (198)
T KOG0079 7 HLFKLLIIGDSGVGKSSLLLRF--ADDTFSGSYIT-TI-----------GVDFKIRTVDINGDRVKLQIWDTAGQERFRT 72 (198)
T ss_pred HHHHHHEECCCCCCHHHHHHHH--HHCCCCCCEEE-EE-----------EEEEEEEEEECCCCEEEEEEEECCCHHHHHH
T ss_conf 8988883268764578999998--52555651488-75-----------3357999860488689999861405799999
Q ss_pred HHHHHHHHHCEEEEEEECCCCCC-HHHHHHHHHHHH--CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCH
Q ss_conf 99999874217899997687886-478999999997--299789999754366740256899999888622673011042
Q gi|254780233|r 98 EVERILCMVESVVVLVDAAEGPM-PQTKFVVGKALK--IGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDF 174 (624)
Q Consensus 98 EVer~l~~~DgaiLvVdA~eGv~-~QT~~vl~~A~~--~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~ 174 (624)
-...--+-..|+++|-|.+.|-- ..-++-|.++.. -.+|.++|=||-|.++-+.-...+. .-| .-|+..
T Consensus 73 itstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t~dA--r~~------A~~mgi 144 (198)
T KOG0079 73 ITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVDTEDA--RAF------ALQMGI 144 (198)
T ss_pred HHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCEEEEHHHH--HHH------HHHCCC
T ss_conf 988770388669999977663656759999999985496435221046788754334303889--999------986692
Q ss_pred HHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 66887886591646742233486413555321024
Q gi|254780233|r 175 PILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 175 Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
..+..||++ +.++++.|..|.+.+
T Consensus 145 e~FETSaKe-----------~~NvE~mF~cit~qv 168 (198)
T KOG0079 145 ELFETSAKE-----------NENVEAMFHCITKQV 168 (198)
T ss_pred HHEEHHHHH-----------CCCCHHHHHHHHHHH
T ss_conf 010000233-----------024167899999999
No 333
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.93 E-value=0.023 Score=34.71 Aligned_cols=129 Identities=25% Similarity=0.313 Sum_probs=69.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCC---HHHHHC------CCEEEEEEEE-------------EEE
Q ss_conf 999854689877889999998396142322000003885---779870------9606467999-------------998
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCN---DLEKER------GITILAKVTS-------------IVW 79 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~---~~EreR------GITI~a~~~~-------------~~~ 79 (624)
|+++|--+.||||.+-.|-++. ..++.++.=--+|+. ..||=| |+.+...... ...
T Consensus 3 i~lvGptGvGKTTTiaKLA~~~--~~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYL--KKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHARE 80 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHH--HHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9998999998899999999999--97699289997488757799999999997498599227755879999999999875
Q ss_pred CCEEEEEECCCC--CCCC--HHHHHHHHHH--HCEEEEEEECCCCCCHHHHHHHHHHHHC--CCC-EEEEEECCCCCCCC
Q ss_conf 997999972898--7540--7999999874--2178999976878864789999999972--997-89999754366740
Q gi|254780233|r 80 NDVRINIVDTPG--HADF--GGEVERILCM--VESVVVLVDAAEGPMPQTKFVVGKALKI--GLR-PIVVVNKVDRSDAR 150 (624)
Q Consensus 80 ~~~~iNiiDTPG--H~DF--~gEVer~l~~--~DgaiLvVdA~eGv~~QT~~vl~~A~~~--~l~-~IvvINKiDr~~a~ 150 (624)
+++-+-|||||| |.|. ..|....+.. .+-.+||+||..|-. .. ..|... .++ -=++++|+|- .++
T Consensus 81 ~~~D~IlIDTaGr~~~d~~~~~el~~l~~~~~p~~~~LVl~a~~~~~-~~----~~~~~f~~~~~~~~~I~TKlDe-t~~ 154 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD-AV----NQAKAFNEALGITGVILTKLDG-DAR 154 (173)
T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCHHH-HH----HHHHHHHHCCCCCEEEEEEECC-CCC
T ss_conf 68998999788878799999999999986448972157424655065-89----9999987427997899971438-997
Q ss_pred HHHHHHHH
Q ss_conf 25689999
Q gi|254780233|r 151 ADEVINEV 158 (624)
Q Consensus 151 ~~~v~~ei 158 (624)
+-.+++-.
T Consensus 155 ~G~~ls~~ 162 (173)
T cd03115 155 GGAALSIR 162 (173)
T ss_pred CCHHHHHH
T ss_conf 57999999
No 334
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.88 E-value=0.0032 Score=40.39 Aligned_cols=50 Identities=32% Similarity=0.476 Sum_probs=37.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCC
Q ss_conf 499985468987788999999839614232200000388577987096064679999989979999728987540
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADF 95 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF 95 (624)
=|+|+|.-++|||||+++|+..- ++||..+ ..+.+..+.+.+ |+||--.|
T Consensus 4 ii~ivG~s~SGKTTLi~kli~~l--------------------~~~G~rV----~~IKH~~H~f~~-D~pGkDS~ 53 (170)
T PRK10751 4 LLAIAAWSGTGKTTLLKKLIPAL--------------------CARGIRP----GLIKHTHHDMDV-DKPGKDSY 53 (170)
T ss_pred EEEEEECCCCCHHHHHHHHHHHH--------------------HHCCCEE----EEEECCCCCCCC-CCCCCCCH
T ss_conf 79999469999999999999999--------------------9879849----999457778889-99984109
No 335
>KOG2486 consensus
Probab=96.88 E-value=0.015 Score=35.98 Aligned_cols=110 Identities=23% Similarity=0.275 Sum_probs=72.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCC--------
Q ss_conf 499985468987788999999839614232200000388577987096064679999989979999728987--------
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGH-------- 92 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH-------- 92 (624)
-+++.|-..-||++|.+.+++. ..+...++. .-|-| +......-+.++.++|-||+
T Consensus 138 e~~~~g~SNVGKSSLln~~~r~-k~~~~t~k~------------K~g~T---q~in~f~v~~~~~~vDlPG~~~a~y~~~ 201 (320)
T KOG2486 138 ELAFYGRSNVGKSSLLNDLVRV-KNIADTSKS------------KNGKT---QAINHFHVGKSWYEVDLPGYGRAGYGFE 201 (320)
T ss_pred EEEEECCCCCCHHHHHHHHHHH-HHHHHHCCC------------CCCCC---EEEEEEECCCEEEEEECCCCCCCCCCCC
T ss_conf 2666247762278887654321-455640378------------87651---1320012055489984688654567855
Q ss_pred --CCCHHH-----HHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf --540799-----99998742178999976878864789999999972997899997543667
Q gi|254780233|r 93 --ADFGGE-----VERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSD 148 (624)
Q Consensus 93 --~DF~gE-----Ver~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~ 148 (624)
+||.-- .|| .-.=.+.|+|||.-++++----....+-+.++|-.++.||||+.-
T Consensus 202 ~~~d~~~~t~~Y~leR--~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~DK~k 262 (320)
T KOG2486 202 LPADWDKFTKSYLLER--ENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCDKQK 262 (320)
T ss_pred CCCHHHHHHHHHHHHH--HHHHEEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEHHHHHH
T ss_conf 7414767578888726--533115666303678899876999887524997388630244555
No 336
>pfam05049 IIGP Interferon-inducible GTPase (IIGP). Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing.
Probab=96.87 E-value=0.02 Score=35.09 Aligned_cols=169 Identities=15% Similarity=0.233 Sum_probs=83.4
Q ss_pred CCCC-EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEE-EEEEEEECC-EEEEEECCCCC-
Q ss_conf 2431-4999854689877889999998396142322000003885779870960646-799999899-79999728987-
Q gi|254780233|r 17 MQIR-NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILA-KVTSIVWND-VRINIVDTPGH- 92 (624)
Q Consensus 17 ~~IR-NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a-~~~~~~~~~-~~iNiiDTPGH- 92 (624)
++.+ ||||.|-.++||+|++.+| -|.-++...... -|.+=.. ..+...+.. -.+.+.|-||-
T Consensus 32 ~~~~lnIavtGesG~GkSsfINal---Rg~g~e~~~aA~-----------tGvvetT~~~~~Y~hp~~pnV~lwDLPG~g 97 (375)
T pfam05049 32 SSAPLKIAVTGDSGNGKSSFINAL---RGIGHEEDGSAP-----------TGVVETTMKRTPYSHPHFPNVVLWDLPGLG 97 (375)
T ss_pred HCCCEEEEEECCCCCCHHHHHHHH---HCCCCCCCCCCC-----------CCCEEECCCCCCCCCCCCCCEEEECCCCCC
T ss_conf 438247998548998678999987---478987777687-----------687663267556789999980796289999
Q ss_pred -CCCHHHHH--H-HHHHHCEEEEEEECCCCCCHHHHHHHHH-HHHCCCCEEEEEECCCCC----------CCCHHHHHHH
Q ss_conf -54079999--9-9874217899997687886478999999-997299789999754366----------7402568999
Q gi|254780233|r 93 -ADFGGEVE--R-ILCMVESVVVLVDAAEGPMPQTKFVVGK-ALKIGLRPIVVVNKVDRS----------DARADEVINE 157 (624)
Q Consensus 93 -~DF~gEVe--r-~l~~~DgaiLvVdA~eGv~~QT~~vl~~-A~~~~l~~IvvINKiDr~----------~a~~~~v~~e 157 (624)
..|.-+-- . -..-.|--|++.+..=. +...-+.+ ..++|.+-.+|=+|+|++ ..+-++++++
T Consensus 98 t~~f~~~~Yl~~~~f~~yDfFiiiss~rf~---~n~v~LAk~i~~mgK~fyfVrtKvD~Dl~~e~~~kp~~F~~e~~Lq~ 174 (375)
T pfam05049 98 ATNFTVETYLEEMKFSEYDFFIIISSERFS---LNDVKLAKAIQRMGKRFYFVRTKLDSDLSNEQKGKPQTFPKEKVLQN 174 (375)
T ss_pred CCCCCHHHHHHHCCCCCCCEEEEEECCCCC---HHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHCCCCCCCHHHHHHH
T ss_conf 899898999987485647789999677543---20189999999838947999862367606576258999998999999
Q ss_pred HHHHHHHCCCCHHHCCHHHHH-HHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCCC
Q ss_conf 998886226730110426688-7886591646742233486413555321024542
Q gi|254780233|r 158 VFDLFSALDATDAQLDFPILY-GSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPP 212 (624)
Q Consensus 158 i~dlf~~l~a~de~ld~Pv~~-~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~P 212 (624)
|.+-..+ +..+..+.-|.+| .|.++ ....+...|.+++...+|+-
T Consensus 175 IR~~c~~-~L~k~gv~eP~VFLvSnfd---------l~~yDFp~L~~TL~~eLP~h 220 (375)
T pfam05049 175 IQDNCRN-NLQKEGVKEPPIFLVSNLD---------PSHYDFPKLRDTLLKDLPII 220 (375)
T ss_pred HHHHHHH-HHHHCCCCCCCEEEEECCC---------HHHCCHHHHHHHHHHHHHHH
T ss_conf 9999999-9987588899789981788---------13268189999999873686
No 337
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=96.81 E-value=0.0048 Score=39.19 Aligned_cols=51 Identities=27% Similarity=0.568 Sum_probs=38.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCC
Q ss_conf 1499985468987788999999839614232200000388577987096064679999989979999728987540
Q gi|254780233|r 20 RNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADF 95 (624)
Q Consensus 20 RNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF 95 (624)
|=|+|+|.-++|||||+++|+..- ++||.++ ..+.+..+.+. +|+||---|
T Consensus 2 kii~ivG~snSGKTTLi~kli~~l--------------------~~~G~~V----~~iKH~~H~f~-~D~~GkDS~ 52 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPAL--------------------SARGLRV----AVIKHDHHDFD-IDTPGKDSY 52 (159)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHH--------------------HHCCCEE----EEEEECCCCCC-CCCCCCHHH
T ss_conf 299999679999999999999999--------------------9779859----89973476777-778984417
No 338
>KOG0087 consensus
Probab=96.81 E-value=0.0052 Score=38.97 Aligned_cols=151 Identities=17% Similarity=0.184 Sum_probs=84.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHHH
Q ss_conf 99985468987788999999839614232200000388577987096064679999989979999728987540799999
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVER 101 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVer 101 (624)
|.+||-..-|||-|..+..+. +-. +|+.. --|+........+.-+-.+..|.||-|---|-.=...
T Consensus 17 iVliGDS~VGKsnLlsRftrn-------EF~----~~Sks---TIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSa 82 (222)
T KOG0087 17 IVLIGDSAVGKSNLLSRFTRN-------EFS----LESKS---TIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSA 82 (222)
T ss_pred EEEECCCCCCHHHHHHHHCCC-------CCC----CCCCC---CEEEEEEEEEEEECCCEEEEEEECCCCHHHHCCCCCH
T ss_conf 999578765536778774335-------467----56666---2468877500235681788765326114565001112
Q ss_pred HHHHHCEEEEEEECCCCCCHHHHHH---HHHHH-H---CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCH
Q ss_conf 9874217899997687886478999---99999-7---299789999754366740256899999888622673011042
Q gi|254780233|r 102 ILCMVESVVVLVDAAEGPMPQTKFV---VGKAL-K---IGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDF 174 (624)
Q Consensus 102 ~l~~~DgaiLvVdA~eGv~~QT~~v---l~~A~-~---~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~ 174 (624)
--+-+-||+||-|-+.- ||-.. |-+-| + -+++++++=||.|....|-- ..++.+. |.+ .+.|
T Consensus 83 YYrgAvGAllVYDITr~---~Tfenv~rWL~ELRdhad~nIvimLvGNK~DL~~lraV-~te~~k~-~Ae----~~~l-- 151 (222)
T KOG0087 83 YYRGAVGALLVYDITRR---QTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAV-PTEDGKA-FAE----KEGL-- 151 (222)
T ss_pred HHCCCCEEEEEEECHHH---HHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHCCCC-CHHHHHH-HHH----HCCC--
T ss_conf 21344036999950467---78888999999998558877179996122045433464-4566566-897----5285--
Q ss_pred HHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 6688788659164674223348641355532102
Q gi|254780233|r 175 PILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDH 208 (624)
Q Consensus 175 Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~ 208 (624)
+.+..||+++ .+++..|+.++..
T Consensus 152 ~f~EtSAl~~-----------tNVe~aF~~~l~~ 174 (222)
T KOG0087 152 FFLETSALDA-----------TNVEKAFERVLTE 174 (222)
T ss_pred EEEEECCCCC-----------CCHHHHHHHHHHH
T ss_conf 4787003444-----------3288999999999
No 339
>TIGR00073 hypB hydrogenase accessory protein HypB; InterPro: IPR004392 The hydrogenase accessory protein HypB is a GTP hydrolase for assembly of nickel metallocentre of hydrogenase. A similar protein, ureG, is an accessory protein for urease, which also uses nickel.; GO: 0016151 nickel ion binding, 0006461 protein complex assembly.
Probab=96.80 E-value=0.00059 Score=45.17 Aligned_cols=151 Identities=21% Similarity=0.333 Sum_probs=84.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCC-CEECCCCHHHHHC--CCEEEEEEE----EEE----E-------
Q ss_conf 431499985468987788999999839614232200-0003885779870--960646799----999----8-------
Q gi|254780233|r 18 QIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVS-ERVMDCNDLEKER--GITILAKVT----SIV----W------- 79 (624)
Q Consensus 18 ~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~-~~vmD~~~~EreR--GITI~a~~~----~~~----~------- 79 (624)
.+-=+=+++-.++|||||.|.|+..-+.--...-+. |-++ ..|-+|=| |+..-+-+| +++ +
T Consensus 33 g~~~lNfmsspGSGKT~LiEk~~~~~~~~~K~Avi~GD~~t-~~DA~RlR~~G~~a~~~nTGk~CHLdA~mv~G~~~~L~ 111 (225)
T TIGR00073 33 GLLVLNFMSSPGSGKTTLIEKLIERLDDEVKIAVIEGDVQT-KNDADRLRKYGVPAIQINTGKECHLDAHMVAGAIHALK 111 (225)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEECCHHH-HHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 97899802588611589999999984578978999755322-55699998649868863688644401667865875542
Q ss_pred ----CCE-EEEE------ECCCCCCCCHHHHHHHHHHHCEEEEEEECCCCCC-----HHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf ----997-9999------7289875407999999874217899997687886-----47899999999729978999975
Q gi|254780233|r 80 ----NDV-RINI------VDTPGHADFGGEVERILCMVESVVVLVDAAEGPM-----PQTKFVVGKALKIGLRPIVVVNK 143 (624)
Q Consensus 80 ----~~~-~iNi------iDTPGH~DF~gEVer~l~~~DgaiLvVdA~eGv~-----~QT~~vl~~A~~~~l~~IvvINK 143 (624)
.+. =+=| +=||-..|.| .+.=|.|++.+||=- |.+ ++.| =+++|||
T Consensus 112 ~~~ld~~~DlL~IENVGNLvCP~~FdLG---------e~~rVvllSVTEGdDk~lKyP~~---F~~A------d~~~inK 173 (225)
T TIGR00073 112 DLPLDDISDLLLIENVGNLVCPADFDLG---------EHMRVVLLSVTEGDDKVLKYPAM---FKEA------DLILINK 173 (225)
T ss_pred CCCCCCCCCEEEEEECCCCEECCCCCCC---------CCCEEEEEEECCCCCCCCCCCHH---HHHH------HHHHHCH
T ss_conf 1688871462688644761006731123---------56307999865899965466158---8744------4562147
Q ss_pred CCC---CCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHC
Q ss_conf 436---6740256899999888622673011042668878865916467422334864135553210
Q gi|254780233|r 144 VDR---SDARADEVINEVFDLFSALDATDAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVD 207 (624)
Q Consensus 144 iDr---~~a~~~~v~~ei~dlf~~l~a~de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~ 207 (624)
.|. -++|.+++.+.++.+ ... .+|+..|+|+| +|++..++.|-.
T Consensus 174 ~DL~~~v~~D~ek~~~d~~~~----nP~-----a~Ii~~S~ktg-----------~Gl~~w~~~l~~ 220 (225)
T TIGR00073 174 VDLAEAVGFDVEKMKADARKI----NPE-----AEIILVSAKTG-----------KGLDEWLEFLEG 220 (225)
T ss_pred HHHHHHHCCCHHHHHHHHHHH----CCC-----EEEEEEECCCC-----------CCHHHHHHHHHH
T ss_conf 889977073678999999862----895-----07998636897-----------347899999998
No 340
>PRK12289 ribosome-associated GTPase; Reviewed
Probab=96.78 E-value=0.0048 Score=39.19 Aligned_cols=83 Identities=22% Similarity=0.245 Sum_probs=54.2
Q ss_pred HHHCEEEEEEECCCCCCHHHH---HHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHHH
Q ss_conf 742178999976878864789---99999997299789999754366740256899999888622673011042668878
Q gi|254780233|r 104 CMVESVVVLVDAAEGPMPQTK---FVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFPILYGS 180 (624)
Q Consensus 104 ~~~DgaiLvVdA~eGv~~QT~---~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~Pv~~~S 180 (624)
.-+|-+++|+.+.+ |.+.+. +-|-.|...++++++++||+|.-+.. -...+.+.+... .+++++.|
T Consensus 87 ANvDq~liV~s~~~-P~~~~~~LDRfLv~ae~~~i~~vivlnK~DL~~~~---e~~~~~~~~~~~-------GY~~i~iS 155 (351)
T PRK12289 87 ANVDQILLVFALAE-PPLDPWQLSRFLVKAESTGLEIQLCLNKADLVSPT---QQQQWQDRLAQW-------GYQPLFIS 155 (351)
T ss_pred CCCCEEEEEEECCC-CCCCHHHHHHHHHHHHHCCCCEEEEEEHHHCCCHH---HHHHHHHHHHHC-------CCCEEEEE
T ss_conf 67035999996578-99887799999999998799789998657749989---999999999977-------98289996
Q ss_pred HHCCEECCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 8659164674223348641355532102
Q gi|254780233|r 181 GRFGWMSDSSDGSRDQGMVPLLNLIVDH 208 (624)
Q Consensus 181 a~~G~~~~~~~~~~~~gl~~Lld~Ii~~ 208 (624)
+.+| .|+++|.+.+-..
T Consensus 156 ~~~~-----------~gl~~L~~~L~~k 172 (351)
T PRK12289 156 VEQG-----------IGLEALLKQLRNK 172 (351)
T ss_pred CCCC-----------CCHHHHHHHHCCC
T ss_conf 7899-----------6899999987598
No 341
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PMID:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=96.78 E-value=0.0095 Score=37.24 Aligned_cols=81 Identities=12% Similarity=0.045 Sum_probs=46.9
Q ss_pred EECCEEEEEECCCCCCCCHHHHHHHHHHHCEEEEEEECCCCCC---HHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHH
Q ss_conf 9899799997289875407999999874217899997687886---4789999999972997899997543667402568
Q gi|254780233|r 78 VWNDVRINIVDTPGHADFGGEVERILCMVESVVVLVDAAEGPM---PQTKFVVGKALKIGLRPIVVVNKVDRSDARADEV 154 (624)
Q Consensus 78 ~~~~~~iNiiDTPGH~DF~gEVer~l~~~DgaiLvVdA~eGv~---~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v 154 (624)
.+..+-+-|||||.-.++ -...+|.++|.+++++.+..--. .|....+..........-+++|+.|.......++
T Consensus 111 ~~~~~D~viiD~pp~l~~--~~~~al~aad~vlipv~~~~~s~~~~~~~~~~~~~~~~~~~~~~iv~n~~~~~~~~~~~~ 188 (246)
T TIGR03371 111 DLAARDWVLIDLPRGPSP--ITDQALAAADLVLVVVNADAACYATLHQLALALLARSVPPDGIHYLINQFQPARQLSRDV 188 (246)
T ss_pred CCCCCCEEEEECCCCCCH--HHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHH
T ss_conf 036798899948998749--999999988947998189989999999999999984277675178863026401589999
Q ss_pred HHHHHH
Q ss_conf 999998
Q gi|254780233|r 155 INEVFD 160 (624)
Q Consensus 155 ~~ei~d 160 (624)
.+.+.+
T Consensus 189 ~~~l~~ 194 (246)
T TIGR03371 189 RAVLRA 194 (246)
T ss_pred HHHHHH
T ss_conf 999999
No 342
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=96.78 E-value=0.0046 Score=39.30 Aligned_cols=98 Identities=18% Similarity=0.094 Sum_probs=61.9
Q ss_pred CCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC--CCCHHHHHHHHHHHHHHCCCCHH
Q ss_conf 5407999999874217899997687886478999999997299789999754366--74025689999988862267301
Q gi|254780233|r 93 ADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRS--DARADEVINEVFDLFSALDATDA 170 (624)
Q Consensus 93 ~DF~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~--~a~~~~v~~ei~dlf~~l~a~de 170 (624)
.||.-.+..+...-.-++.|||+.+=+..=-..+.+. + -+.+.++++||+|.- ....+++.+-+.+.+.+.+...+
T Consensus 51 ~d~~~~l~~i~~~~~lVv~VvDi~Df~gS~~~~l~~~-~-~~~~v~lV~NK~DLLP~~~~~~~i~~wv~~~~~~~gl~~~ 128 (360)
T TIGR03597 51 DDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRF-V-GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPV 128 (360)
T ss_pred HHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHH-H-CCCCEEEEEEHHHCCCCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 9999999874236837999986414776534649998-3-8985899998054288767879999999999998599836
Q ss_pred HCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHC
Q ss_conf 1042668878865916467422334864135553210
Q gi|254780233|r 171 QLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVD 207 (624)
Q Consensus 171 ~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~ 207 (624)
. |...||+.|| |++.|++.|-+
T Consensus 129 ~----V~lvSa~~g~-----------gi~~l~~~i~~ 150 (360)
T TIGR03597 129 D----IILVSAKKGN-----------GIDELLDKIKK 150 (360)
T ss_pred C----EEEEECCCCC-----------CHHHHHHHHHH
T ss_conf 6----8999688898-----------99999999998
No 343
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=96.69 E-value=0.036 Score=33.42 Aligned_cols=129 Identities=22% Similarity=0.358 Sum_probs=68.8
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCC-C-CCC-CCCC----------------C-------EECCCCHHHH-----
Q ss_conf 024314999854689877889999998396-1-423-2200----------------0-------0038857798-----
Q gi|254780233|r 16 YMQIRNIAIIAHVDHGKTTLVDELLKQSGV-F-RDN-QRVS----------------E-------RVMDCNDLEK----- 64 (624)
Q Consensus 16 ~~~IRNiaIiaHvDhGKTTL~d~LL~~sG~-~-~~~-~~v~----------------~-------~vmD~~~~Er----- 64 (624)
.-.+=-|+++|+--+||||+.|+| +|. | .+. |-+. + ...|..+++.
T Consensus 23 ~i~LPqiVVvGdQSsGKSSvLEai---tGi~FlPr~~g~cTR~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 99 (240)
T smart00053 23 DLDLPQIAVVGGQSAGKSSVLENF---VGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAE 99 (240)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHH---HCCCCCCCCCCCEECCEEEEEEECCCCCCEEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 878984899888787589999998---78875556897276440699973388651247743786348989999999998
Q ss_pred -HC--C--CEEEEEEEEEEECC---EEEEEECCCCCCC--C----HHHHHHHHHHH-------CE-EEEEEECCCCCCHH
Q ss_conf -70--9--60646799999899---7999972898754--0----79999998742-------17-89999768788647
Q gi|254780233|r 65 -ER--G--ITILAKVTSIVWND---VRINIVDTPGHAD--F----GGEVERILCMV-------ES-VVVLVDAAEGPMPQ 122 (624)
Q Consensus 65 -eR--G--ITI~a~~~~~~~~~---~~iNiiDTPGH~D--F----~gEVer~l~~~-------Dg-aiLvVdA~eGv~~Q 122 (624)
++ | -.+......++..+ -.++|||.||-.- - ..-++.+-+|+ .. .|.||+|..-+.
T Consensus 100 ~~~~~g~~~~~s~~~l~lei~gP~~p~LTlvDLPGl~~~~~~~q~~~~~~~v~~lv~~Yi~~p~tIILaVv~a~~D~a-- 177 (240)
T smart00053 100 TDRVTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLA-- 177 (240)
T ss_pred HHHHCCCCCCCCCCCEEEEEECCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHH--
T ss_conf 875326788767885599994799988544147541246789985679999999999984798806999840785676--
Q ss_pred HHHHHHHHHHC---CCCEEEEEECCCCCCC
Q ss_conf 89999999972---9978999975436674
Q gi|254780233|r 123 TKFVVGKALKI---GLRPIVVVNKVDRSDA 149 (624)
Q Consensus 123 T~~vl~~A~~~---~l~~IvvINKiDr~~a 149 (624)
|..+++.|.+. |.+.|-+|+|.|+-+.
T Consensus 178 nq~~l~lAr~~Dp~g~RTiGVlTKpDl~~~ 207 (240)
T smart00053 178 NSDALKLAKEVDPQGERTIGVITKLDLMDE 207 (240)
T ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCCCC
T ss_conf 619999999719999828999735334577
No 344
>pfam07015 VirC1 VirC1 protein. This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon which enhances T-DNA processing probably does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA.
Probab=96.64 E-value=0.019 Score=35.20 Aligned_cols=132 Identities=14% Similarity=0.208 Sum_probs=70.9
Q ss_pred EEEEC-CCCCCHHHHHHHHHHHCCCCCCCCC-CCCEECCCCHH---------HHHCCC-----EEEEEE-EE-E------
Q ss_conf 99985-4689877889999998396142322-00000388577---------987096-----064679-99-9------
Q gi|254780233|r 22 IAIIA-HVDHGKTTLVDELLKQSGVFRDNQR-VSERVMDCNDL---------EKERGI-----TILAKV-TS-I------ 77 (624)
Q Consensus 22 iaIia-HvDhGKTTL~d~LL~~sG~~~~~~~-v~~~vmD~~~~---------EreRGI-----TI~a~~-~~-~------ 77 (624)
|++.. -.++||||++=.| ++.+...|. | .+.|.+++ -..+|. .+.... .+ +
T Consensus 4 i~~~~~KGG~GKtT~a~~l---a~~~~~~g~~V--~liD~Dpq~s~~~W~~~a~~~~~~~~~~~v~~~~~~~~l~~~~~~ 78 (231)
T pfam07015 4 ITFCSFKGGAGKTTALMGL---CSALASDGKRV--ALFEADENRPLTKWRENALRKGTWDPACEIFNADELPLLEQAYEH 78 (231)
T ss_pred EEEEECCCCCCHHHHHHHH---HHHHHHCCCEE--EEEECCCCCCHHHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHHH
T ss_conf 9996179986599999999---99999689959--999689986889999987646888876522205660158999998
Q ss_pred -EECCEEEEEECCCCCCCCHHHHHHHHHHHCEEEEEEECCCCCC-----HHHH-HHH--HHHHHCCCCEEEEEECCCCCC
Q ss_conf -9899799997289875407999999874217899997687886-----4789-999--999972997899997543667
Q gi|254780233|r 78 -VWNDVRINIVDTPGHADFGGEVERILCMVESVVVLVDAAEGPM-----PQTK-FVV--GKALKIGLRPIVVVNKVDRSD 148 (624)
Q Consensus 78 -~~~~~~iNiiDTPGH~DF~gEVer~l~~~DgaiLvVdA~eGv~-----~QT~-~vl--~~A~~~~l~~IvvINKiDr~~ 148 (624)
.-.+|.+-||||||+... .+..++..+|-+|+=+-.. ++ .+|- .+. .++....+|.-|+.+++- -
T Consensus 79 ~~~~~yD~VIIDtpg~~s~--~~~~AI~~ADlVLIP~qpS--plD~~~a~~t~~~i~~~~~~~~~~ip~avl~tRv~--~ 152 (231)
T pfam07015 79 AEGSGFDYALADTHGGSSE--LNNTIIASSDLLLIPTMLT--PLDIDEALATYRYVIELLLTENLAIPTAILRQRVP--V 152 (231)
T ss_pred HHHCCCCEEEECCCCCCCH--HHHHHHHHCCEEEECCCCC--HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECC--C
T ss_conf 8657999899839985758--9999999789899778998--23399999999999999997378998033455114--0
Q ss_pred CCHHHHHHHHHHHHHH
Q ss_conf 4025689999988862
Q gi|254780233|r 149 ARADEVINEVFDLFSA 164 (624)
Q Consensus 149 a~~~~v~~ei~dlf~~ 164 (624)
++.......+.+++..
T Consensus 153 ~~~~~~~~~i~e~le~ 168 (231)
T pfam07015 153 GRLTSSQRFCSDMLEQ 168 (231)
T ss_pred CCCCHHHHHHHHHHHC
T ss_conf 0021789999999964
No 345
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=96.64 E-value=0.0029 Score=40.66 Aligned_cols=19 Identities=26% Similarity=0.469 Sum_probs=13.0
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9998546898778899999
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELL 40 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL 40 (624)
++|+|.---|||||+-+|+
T Consensus 118 v~ivG~PNVGKSSlIN~L~ 136 (171)
T cd01856 118 AMVVGIPNVGKSTLINRLR 136 (171)
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9997379876179999974
No 346
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=96.63 E-value=0.02 Score=35.20 Aligned_cols=29 Identities=17% Similarity=0.488 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 49998546898778899999983961423220
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRV 52 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v 52 (624)
-+||+|+.++|||||...|+ |.+...|.+
T Consensus 32 ~vaIvG~sGsGKSTLl~lL~---gl~~~~G~I 60 (275)
T cd03289 32 RVGLLGRTGSGKSTLLSAFL---RLLNTEGDI 60 (275)
T ss_pred EEEEECCCCCCHHHHHHHHH---HHCCCCCEE
T ss_conf 99999999997999999996---035789539
No 347
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=96.61 E-value=0.035 Score=33.51 Aligned_cols=135 Identities=21% Similarity=0.353 Sum_probs=68.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCC------CCCCCCCCEECCCCHHHHHCC--C-EEEEE--EEEEEE-------
Q ss_conf 43149998546898778899999983961------423220000038857798709--6-06467--999998-------
Q gi|254780233|r 18 QIRNIAIIAHVDHGKTTLVDELLKQSGVF------RDNQRVSERVMDCNDLEKERG--I-TILAK--VTSIVW------- 79 (624)
Q Consensus 18 ~IRNiaIiaHvDhGKTTL~d~LL~~sG~~------~~~~~v~~~vmD~~~~EreRG--I-TI~a~--~~~~~~------- 79 (624)
+|==..|-|--++|||||.-+||.+.+-. ++-|.+. .|..-+. +.+ + .+... +|++.-
T Consensus 3 ~IPVtiltGFLGaGKTTlL~~lL~~~~~~riaVivNEfGev~---iD~~li~-~~~~~v~eL~nGCiCCs~~~dl~~~l~ 78 (317)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVS---VDDQLIG-DRATQIKTLTNGCICCSRSNELEDALL 78 (317)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCC---CHHHHHH-CCCCCEEEECCCCEEEEECCHHHHHHH
T ss_conf 768899830888899999999972778997899983761453---3298873-565326884477368730522899999
Q ss_pred ------C--C--EEEEEECCCCCCCCHHHHHH-----HH---HHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf ------9--9--79999728987540799999-----98---74217899997687886478999999997299789999
Q gi|254780233|r 80 ------N--D--VRINIVDTPGHADFGGEVER-----IL---CMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVV 141 (624)
Q Consensus 80 ------~--~--~~iNiiDTPGH~DF~gEVer-----~l---~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvI 141 (624)
. + .-.-||-|-|=+|=+-=++. .+ -..|++|-||||..+.+--..+-+. ..+...-=++++
T Consensus 79 ~l~~~~~~~~~~~D~IiIEtsGlAdP~~I~~~~~~~~~l~~~~~Ld~vVtvVDa~~~~~~l~~~~~~-~~Qi~~AD~ill 157 (317)
T PRK11537 79 DLLDNLDRGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIA-QSQVGYADRILL 157 (317)
T ss_pred HHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHEECCCEEEEEEHHHHHHHHHCCHHH-HHHHHHCCEEEE
T ss_conf 9998664357775479996257788399999986125656532036559998665557665303466-766631868997
Q ss_pred ECCCCCCCCHHHHHHHH
Q ss_conf 75436674025689999
Q gi|254780233|r 142 NKVDRSDARADEVINEV 158 (624)
Q Consensus 142 NKiDr~~a~~~~v~~ei 158 (624)
||.|+.+.. +.+...+
T Consensus 158 nK~Dlv~~~-~~l~~~l 173 (317)
T PRK11537 158 TKTDVAGEA-EKLRERL 173 (317)
T ss_pred ECCCCCCHH-HHHHHHH
T ss_conf 420023659-9999999
No 348
>pfam02492 cobW CobW/HypB/UreG, nucleotide-binding domain. This domain is found in HypB, a hydrogenase expression / formation protein, and UreG a urease accessory protein. Both these proteins contain a P-loop nucleotide binding motif. HypB has GTPase activity and is a guanine nucleotide binding protein. It is not known whether UreG binds GTP or some other nucleotide. Both enzymes are involved in nickel binding. HypB can store nickel and is required for nickel dependent hydrogenase expression. UreG is required for functional incorporation of the urease nickel metallocenter. GTP hydrolysis may required by these proteins for nickel incorporation into other nickel proteins. This family of domains also contains P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression, and the cobW gene product, which may be involved in cobalamin biosynthesis in Pseudomonas denitrificans.
Probab=96.60 E-value=0.05 Score=32.49 Aligned_cols=132 Identities=22% Similarity=0.282 Sum_probs=65.9
Q ss_pred EEECCCCCCHHHHHHHHHHHCCCCCCCCCCC-C---EECCCCHHHHHCCCEEEEE-----EEEE------------EEC-
Q ss_conf 9985468987788999999839614232200-0---0038857798709606467-----9999------------989-
Q gi|254780233|r 23 AIIAHVDHGKTTLVDELLKQSGVFRDNQRVS-E---RVMDCNDLEKERGITILAK-----VTSI------------VWN- 80 (624)
Q Consensus 23 aIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~-~---~vmD~~~~EreRGITI~a~-----~~~~------------~~~- 80 (624)
.|-|-.++|||||..+||++...-.+..-+. | .-.|..-+ ++.|..+..- +|+. .+.
T Consensus 4 iitGFLGsGKTTll~~ll~~~~~~~~~avI~Ne~g~~~iD~~ll-~~~~~~v~el~~GciCc~~~~d~~~~l~~l~~~~~ 82 (174)
T pfam02492 4 VLTGFLGSGKTTLLEHLLRDNREGLKIAVIVNDFGETGIDAELL-RETGAEIVELNNGCICCTIREDLSMVLEALLELKL 82 (174)
T ss_pred EEECCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHH-HHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 99348878899999999984448984799993365302079998-70696189974886645433369999999985578
Q ss_pred -CEEEEEECCCCCCCCHHHHHHH-HHHHCEEEEEEECCC---CCCHHHHHHHHHHHHCCCCEEEEEECCCCCCC-CH-HH
Q ss_conf -9799997289875407999999-874217899997687---88647899999999729978999975436674-02-56
Q gi|254780233|r 81 -DVRINIVDTPGHADFGGEVERI-LCMVESVVVLVDAAE---GPMPQTKFVVGKALKIGLRPIVVVNKVDRSDA-RA-DE 153 (624)
Q Consensus 81 -~~~iNiiDTPGH~DF~gEVer~-l~~~DgaiLvVdA~e---Gv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a-~~-~~ 153 (624)
+.-.-||-|-|-+|-..-++-. --..++.+.||||.. +...+.. ...+...--++++||+|+-.. +. +.
T Consensus 83 ~~~d~iiIE~sGla~p~~i~~~~~~~~~~~~i~vvDa~~~~~~~~~~~~----~~~Qi~~AD~vvlNK~Dl~~~~~~l~~ 158 (174)
T pfam02492 83 PRLDLLFIETTGLACPAPVLDLRSDLGLDGVVTVVDVKNFTEGEDIPEK----APDQIAFADLIVINKTDLAPAVGALEK 158 (174)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCEEEEEEECHHHHHCCCCHHH----HHHHHHHCCEEEEEHHHCCCCHHHHHH
T ss_conf 9999999958766770777765320265459999972343300200789----999998769999846653782769999
Q ss_pred HHHHHH
Q ss_conf 899999
Q gi|254780233|r 154 VINEVF 159 (624)
Q Consensus 154 v~~ei~ 159 (624)
+...+.
T Consensus 159 ~~~~i~ 164 (174)
T pfam02492 159 LEADLR 164 (174)
T ss_pred HHHHHH
T ss_conf 999999
No 349
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.56 E-value=0.015 Score=35.86 Aligned_cols=21 Identities=24% Similarity=0.283 Sum_probs=16.2
Q ss_pred CCCCCCCCCEEEEECCCCCCE
Q ss_conf 078051598899960578501
Q gi|254780233|r 241 HSGTIKSNQNIKALSPDGALV 261 (624)
Q Consensus 241 ~sGtlk~Gd~V~vl~~~g~~~ 261 (624)
.|=++++|+.+.++.++|..+
T Consensus 369 is~~i~~Ge~vaIVG~SGsGK 389 (588)
T PRK11174 369 LNFTLPAGQRVALVGPSGAGK 389 (588)
T ss_pred EEEEECCCCEEEEECCCCCCH
T ss_conf 469974997899989998649
No 350
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=96.56 E-value=0.066 Score=31.74 Aligned_cols=134 Identities=20% Similarity=0.287 Sum_probs=72.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCC---HHHHHC------CCEEEEEEEE-------------EE
Q ss_conf 4999854689877889999998396142322000003885---779870------9606467999-------------99
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCN---DLEKER------GITILAKVTS-------------IV 78 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~---~~EreR------GITI~a~~~~-------------~~ 78 (624)
=|+++|--+.||||.+-.|-.+.. .++.++.=--+|+. ..||=+ |+.+...... ..
T Consensus 3 vi~lvGptGvGKTTTiaKLAa~~~--~~~~~V~lit~Dt~R~gA~eQL~~ya~~l~v~~~~~~~~~d~~~~~~~~l~~~~ 80 (196)
T pfam00448 3 VILLVGLQGSGKTTTIAKLAAYLK--KQGKKVLLVAADTFRAAAIEQLKQLAERLGVPVFGSGTGSDPAAVAFDAVEKAK 80 (196)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH--HCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999989999988999999999999--779928999758776889999999998639817814877787899999999988
Q ss_pred ECCEEEEEECCCCCCCC----HHHHHHHHHH--HCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHH
Q ss_conf 89979999728987540----7999999874--21789999768788647899999999729978999975436674025
Q gi|254780233|r 79 WNDVRINIVDTPGHADF----GGEVERILCM--VESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDARAD 152 (624)
Q Consensus 79 ~~~~~iNiiDTPGH~DF----~gEVer~l~~--~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~ 152 (624)
.+++.+-||||||..-+ ..|....... -+-.+||+||.-|.... ..++......++. =++++|+|- .+++-
T Consensus 81 ~~~~D~IlIDTaGr~~~d~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~-~~~~~f~~~~~~~-~~I~TKlDe-t~~~G 157 (196)
T pfam00448 81 AENYDVVLVDTAGRLQNDKNLMDELKKIKRVIAPDEVLLVLDATTGQNAL-NQAKAFNEAVGIT-GVILTKLDG-DAKGG 157 (196)
T ss_pred HCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHH-HHHHHHHHHCCCC-CEEEEEECC-CCCCC
T ss_conf 46899999989998747677899999998522873028998567782137-8999876004776-268884057-88752
Q ss_pred HHHHHHH
Q ss_conf 6899999
Q gi|254780233|r 153 EVINEVF 159 (624)
Q Consensus 153 ~v~~ei~ 159 (624)
.+++-+.
T Consensus 158 ~~l~~~~ 164 (196)
T pfam00448 158 AALSIAA 164 (196)
T ss_pred HHHHHHH
T ss_conf 9998999
No 351
>KOG0448 consensus
Probab=96.55 E-value=0.066 Score=31.72 Aligned_cols=157 Identities=18% Similarity=0.318 Sum_probs=82.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCC-------C-----CEE--CCCCHHHH----HCCCEE----------EE
Q ss_conf 49998546898778899999983961423220-------0-----000--38857798----709606----------46
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRV-------S-----ERV--MDCNDLEK----ERGITI----------LA 72 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v-------~-----~~v--mD~~~~Er----eRGITI----------~a 72 (624)
-|+|-|-.-+||+|+..+||.+.=.=.+.|.. + +-+ .|..+ |+ -++-+| ..
T Consensus 111 KV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~-ek~d~~ti~~~~haL~~~~~~~~~ 189 (749)
T KOG0448 111 KVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSE-EKIDMKTINQLAHALKPDKDLGAG 189 (749)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCEEECCCCCC-CCCCHHHHHHHHHHCCCCCCCCCC
T ss_conf 7999578777689999999987207666655312346631467731155168873-432188877778751733003765
Q ss_pred EEEEEEECCE-------EEEEECCCCC---CCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHH-HHHHHHCCCCEEEE-
Q ss_conf 7999998997-------9999728987---5407999999874217899997687886478999-99999729978999-
Q gi|254780233|r 73 KVTSIVWNDV-------RINIVDTPGH---ADFGGEVERILCMVESVVVLVDAAEGPMPQTKFV-VGKALKIGLRPIVV- 140 (624)
Q Consensus 73 ~~~~~~~~~~-------~iNiiDTPGH---~DF~gEVer~l~~~DgaiLvVdA~eGv~~QT~~v-l~~A~~~~l~~Ivv- 140 (624)
....+.|++- -+-+||.||- .-+...+-.-.-=+|-.|+|++|-. -+.|++.. +.++-+ +.|-|++
T Consensus 190 sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEn-tlt~sek~Ff~~vs~-~KpniFIl 267 (749)
T KOG0448 190 SLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAEN-TLTLSEKQFFHKVSE-EKPNIFIL 267 (749)
T ss_pred EEEEEEECCCCCHHHHCCCEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCC-HHHHHHHHHHHHHHC-CCCCEEEE
T ss_conf 0689994286321330550120588888860245999976440775899961763-868989999998540-48847999
Q ss_pred EECCCCCCCCH---HHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHC
Q ss_conf 97543667402---56899999888622673011042668878865
Q gi|254780233|r 141 VNKVDRSDARA---DEVINEVFDLFSALDATDAQLDFPILYGSGRF 183 (624)
Q Consensus 141 INKiDr~~a~~---~~v~~ei~dlf~~l~a~de~ld~Pv~~~Sa~~ 183 (624)
.||-|.....+ +.|..|+.+|=.. ..-+..|+ |.|+||++
T Consensus 268 nnkwDasase~ec~e~V~~Qi~eL~v~--~~~eA~Dr-vfFVS~~e 310 (749)
T KOG0448 268 NNKWDASASEPECKEDVLKQIHELSVV--TEKEAADR-VFFVSAKE 310 (749)
T ss_pred ECHHHHHCCCHHHHHHHHHHHHHCCCC--CHHHHCCE-EEEEECCC
T ss_conf 640122026377899999988751743--36663673-69984531
No 352
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=96.54 E-value=0.013 Score=36.38 Aligned_cols=53 Identities=26% Similarity=0.467 Sum_probs=35.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCC
Q ss_conf 49998546898778899999983961423220000038857798709606467999998997999972898
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPG 91 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPG 91 (624)
+|+|+|+-..|||||+.+|+....+. +.+ .-|.|--+..+ .+ +..+.++||||
T Consensus 102 ~i~ivG~PNVGKSsliN~L~~~~~~~-----v~~----------~pGtTrd~~~i--~~-~~~~~liDTpG 154 (155)
T cd01849 102 TVGVIGYPNVGKSSVINALLNKLKLK-----VGN----------VPGTTTSQQEV--KL-DNKIKLLDTPG 154 (155)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCEEE-----ECC----------CCCCEECEEEE--EE-CCCEEEEECCC
T ss_conf 89998777744778999984785062-----669----------99838355999--96-89989997929
No 353
>PRK12289 ribosome-associated GTPase; Reviewed
Probab=96.48 E-value=0.0027 Score=40.79 Aligned_cols=46 Identities=15% Similarity=0.079 Sum_probs=17.9
Q ss_pred EEEEEECHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCEEEEECCCC
Q ss_conf 99999613356568899885327616788887053013578787774258882898
Q gi|254780233|r 453 RLVFLSPTRGLIGYQSQLMTDTRGTAIMNRLFHSYQPHKGEIGGRSNGVLLSNEEG 508 (624)
Q Consensus 453 ~l~~~vP~r~l~g~~~~l~s~T~G~g~~~~~f~~Y~p~~g~i~~r~~G~lis~~~G 508 (624)
.|.+.+|.. ..++-=.|...|+|-.+..+...=|.+ +|.+|++.+|
T Consensus 187 LIN~L~p~~---~l~TgeVS~k~~rGrHTTr~~eL~~L~-------~Gg~iiDTPG 232 (351)
T PRK12289 187 LINRLIPDV---ELRVGEVSGKLQRGRHTTRHVELFELP-------NGGLLADTPG 232 (351)
T ss_pred HHHHHCCCH---HHHHHHHCCCCCCCCCCCCEEEEEECC-------CCCEEEECCC
T ss_conf 887637412---345665406489987835516899948-------9958997979
No 354
>pfam05783 DLIC Dynein light intermediate chain (DLIC). This family consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo.
Probab=96.47 E-value=0.025 Score=34.54 Aligned_cols=20 Identities=35% Similarity=0.650 Sum_probs=19.3
Q ss_pred CEEEEECCCCCCHHHHHHHH
Q ss_conf 14999854689877889999
Q gi|254780233|r 20 RNIAIIAHVDHGKTTLVDEL 39 (624)
Q Consensus 20 RNiaIiaHvDhGKTTL~d~L 39 (624)
.||-|+|.-+.|||||+.+|
T Consensus 46 K~ILVLGd~~sGKttLi~kL 65 (490)
T pfam05783 46 KNVLVLGEDGSGKTTLIAKL 65 (490)
T ss_pred CEEEEECCCCCCHHHHHHHH
T ss_conf 72899778987558999885
No 355
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=96.45 E-value=0.023 Score=34.67 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=20.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 999854689877889999998396
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGV 45 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~ 45 (624)
+||+|.-++|||||.+.|++.-|.
T Consensus 25 taIvGpsGsGKSTLl~~i~~~lg~ 48 (197)
T cd03278 25 TAIVGPNGSGKSNIIDAIRWVLGE 48 (197)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 899999999889999999987477
No 356
>TIGR00436 era GTP-binding protein Era; InterPro: IPR005662 Era is an essential G-protein in Escherichia coli identified originally as a homologue protein to Ras (E. coli Ras-like protein). It binds to GTP/GDP and contains a low intrinsic GTPase activity. Its function remains elusive, although it may be associated with cell division, energy metabolism, and cell-cycle check point. The protein has recently been shown to specifically bind to 16S rRNA and the 30S ribosomal subunit . Involvement of Era in protein synthesis is suggested by the fact that Era depletion results in the translation defect both in vitro and in vivo. A Type 2 KH domain is found near the C-terminus. ; GO: 0003723 RNA binding, 0005525 GTP binding, 0005622 intracellular.
Probab=96.42 E-value=0.012 Score=36.60 Aligned_cols=112 Identities=23% Similarity=0.323 Sum_probs=76.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEE-EEEECCCCCCCC-HHH
Q ss_conf 499985468987788999999839614232200000388577987096064679999989979-999728987540-799
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVR-INIVDTPGHADF-GGE 98 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~-iNiiDTPGH~DF-~gE 98 (624)
-++++|.-..||+||...++.+.-.+...-.- ...-+-.|+ +.-...+ +.++||||...- .-.
T Consensus 2 ~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~--------~~~~~~~~~~~~d~pg~~~~~~~~ 66 (278)
T TIGR00436 2 FVAILGRPNVGKSTLLNKLLGQKISITSPKPQ-------TTRNRISGI--------LTTGASQNIIFIDTPGFHEPEKHK 66 (278)
T ss_pred CEEECCCCCCCHHHHHHHHHCCCHHCCCCCCH-------HHHHHHHEE--------EECCCCCCEEEEECCCCCCHHHHH
T ss_conf 11211577653366777663241010023101-------234332001--------223665515786258765124567
Q ss_pred HH--------HHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 99--------99874217899997687886478999999997299789999754366
Q gi|254780233|r 99 VE--------RILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRS 147 (624)
Q Consensus 99 Ve--------r~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~ 147 (624)
.. .++.-+|..++++++.++....-.+++.+......+.++.+||+|..
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (278)
T TIGR00436 67 LGELLNKEARSALGGVDLLLFVVDSDEWNGDGDEFLLEKLQNLKRPVLLTLNKLDNK 123 (278)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHC
T ss_conf 788888888753123226889863344556404688987652021010012233310
No 357
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=96.40 E-value=0.0098 Score=37.16 Aligned_cols=98 Identities=16% Similarity=0.231 Sum_probs=53.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHH
Q ss_conf 14999854689877889999998396142322000003885779870960646799999899799997289875407999
Q gi|254780233|r 20 RNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEV 99 (624)
Q Consensus 20 RNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEV 99 (624)
=||-++|-.+-|||+.+..++-...+.. +...-| |-.-..++-..+|.++|||||||-.+=.
T Consensus 32 ltILvlGKtGVGKSsTINSifgE~~~~~----------~aF~~~-----t~r~~~v~~tv~G~kl~iIDTPGL~~~~--- 93 (249)
T cd01853 32 LTILVLGKTGVGKSSTINSIFGERKAAT----------SAFQSE-----TLRVREVSGTVDGFKLNIIDTPGLLESV--- 93 (249)
T ss_pred EEEEEEECCCCCHHHHHHHHCCCCCCCC----------CCCCCC-----CCCEEEEEEEECCEEEEEECCCCCCCCC---
T ss_conf 6999980687645776776508541344----------776778-----8650899875334489986089877665---
Q ss_pred HHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHH-CCCCEEEEEECCCCCCCC
Q ss_conf 999874217899997687886478999999997-299789999754366740
Q gi|254780233|r 100 ERILCMVESVVVLVDAAEGPMPQTKFVVGKALK-IGLRPIVVVNKVDRSDAR 150 (624)
Q Consensus 100 er~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~-~~l~~IvvINKiDr~~a~ 150 (624)
.|+ .+-.+--...++.+. ...-+++++.++|-...|
T Consensus 94 ------~~~---------~~N~k~l~~iKr~l~~~~~DvvLYvDRLD~~r~d 130 (249)
T cd01853 94 ------MDQ---------RVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRD 130 (249)
T ss_pred ------CCC---------HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCC
T ss_conf ------422---------1309999999999628999789998457662458
No 358
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=96.39 E-value=0.0073 Score=38.01 Aligned_cols=78 Identities=24% Similarity=0.297 Sum_probs=59.3
Q ss_pred CCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCC-CCC
Q ss_conf 1111013677734999996078051598899960578501211455301103665344411254554322223321-012
Q gi|254780233|r 222 IGTILEKDPFLGRIVTGRIHSGTIKSNQNIKALSPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSIAGLVKA-TVA 300 (624)
Q Consensus 222 ~V~~i~~d~y~Gria~gRV~sGtlk~Gd~V~vl~~~g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIvaIaGl~~~-~iG 300 (624)
.|.-..-|...|.+++.=|.+|+|+.||-+.. |. ..+||..|+-..| ..+++|.+|+.|-|.|++++ ..|
T Consensus 4 ~VlEs~~d~~~G~vatviV~~GtL~~Gd~~v~----G~--~~gkVr~l~d~~g---~~v~~A~Ps~pV~I~G~~~~P~aG 74 (95)
T cd03702 4 VVIESKLDKGRGPVATVLVQNGTLKVGDVLVA----GT--TYGKVRAMFDENG---KRVKEAGPSTPVEILGLKGVPQAG 74 (95)
T ss_pred EEEEEEECCCCCCEEEEEEECCEEECCCEEEE----CC--EEEEEEEEECCCC---CCCCEECCCCCEEEECCCCCCCCC
T ss_conf 99999976998847999991580206989887----86--3889999999999---999888699859995789999999
Q ss_pred CEECCCCC
Q ss_conf 21105565
Q gi|254780233|r 301 DTFCDPSI 308 (624)
Q Consensus 301 DTL~~~~~ 308 (624)
|-+...++
T Consensus 75 d~~~~v~s 82 (95)
T cd03702 75 DKFLVVES 82 (95)
T ss_pred CEEEEECC
T ss_conf 98999599
No 359
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=96.39 E-value=0.0066 Score=38.29 Aligned_cols=51 Identities=24% Similarity=0.196 Sum_probs=37.9
Q ss_pred HHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHH--CCCCEEEEEECCCCCC
Q ss_conf 99999874217899997687886478999999997--2997899997543667
Q gi|254780233|r 98 EVERILCMVESVVVLVDAAEGPMPQTKFVVGKALK--IGLRPIVVVNKVDRSD 148 (624)
Q Consensus 98 EVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~--~~l~~IvvINKiDr~~ 148 (624)
|+.|++..+|.+|.|+||..+.-+.-..+-+...+ .+.|.|+++||+|...
T Consensus 1 ql~~~i~~aD~vl~V~DaR~p~ss~n~~l~~~lr~~~~~K~~i~VlNK~Dl~~ 53 (157)
T cd01858 1 ELYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVP 53 (157)
T ss_pred CHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCC
T ss_conf 98897875999999988988888789899999875379997899998944798
No 360
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=96.39 E-value=0.026 Score=34.43 Aligned_cols=110 Identities=25% Similarity=0.279 Sum_probs=60.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCC--EEEEEEEEEEECCEEEEEECCCCCC---CCH
Q ss_conf 99985468987788999999839614232200000388577987096--0646799999899799997289875---407
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGI--TILAKVTSIVWNDVRINIVDTPGHA---DFG 96 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGI--TI~a~~~~~~~~~~~iNiiDTPGH~---DF~ 96 (624)
..|||.-++||||+. .+||.---.. |......-+|+ |- +|..-+-+ .=-+|||.|.- |=-
T Consensus 114 YlviG~~gsGKTt~l----~~Sgl~fPl~-------~~~~~~~~~g~ggt~---~cdwwft~-~AVliDtaGry~~Q~~~ 178 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLL----QNSGLKFPLA-------ERLGAAALRGVGGTR---NCDWWFTD-EAVLIDTAGRYTTQDSD 178 (1169)
T ss_pred EEEECCCCCCHHHHH----HHCCCCCCCC-------CCCCHHHCCCCCCCC---CCCEEEEC-CEEEEECCCCEECCCCC
T ss_conf 899789998668999----8379988774-------100112215889985---55716527-87999479760268886
Q ss_pred HHHHH-----HH---------HHHCEEEEEEECCC---CCCHHHH--------HH--HHHHHHCCCCEEEEEECCCC
Q ss_conf 99999-----98---------74217899997687---8864789--------99--99999729978999975436
Q gi|254780233|r 97 GEVER-----IL---------CMVESVVVLVDAAE---GPMPQTK--------FV--VGKALKIGLRPIVVVNKVDR 146 (624)
Q Consensus 97 gEVer-----~l---------~~~DgaiLvVdA~e---Gv~~QT~--------~v--l~~A~~~~l~~IvvINKiDr 146 (624)
.|..+ -| +-+.|+||.||..+ +...+-. ++ ++..+...+|+-|+++|+|+
T Consensus 179 ~~~d~~~W~~fL~lLkk~R~r~piNGvil~is~~~Ll~~~~~~~~~~a~~lr~Rl~El~~~lg~~~PVYv~~TK~Dl 255 (1169)
T TIGR03348 179 PEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADL 255 (1169)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHH
T ss_conf 40018999999999986489899876899978999747899999999999999999999982998775998664012
No 361
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=96.38 E-value=0.0058 Score=38.65 Aligned_cols=58 Identities=24% Similarity=0.354 Sum_probs=36.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCC
Q ss_conf 2431499985468987788999999839614232200000388577987096064679999989979999728987
Q gi|254780233|r 17 MQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGH 92 (624)
Q Consensus 17 ~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH 92 (624)
..-++|+++|.---|||||..+|+... .-.+. ..=|+|-..+. +. -+..+.++||||=
T Consensus 81 ~~~~~i~ivG~PNVGKSSlIN~L~g~k-----~~~v~----------~~PG~Tr~~~~--i~-~~~~i~liDTPGi 138 (141)
T cd01857 81 KENATIGLVGYPNVGKSSLINALVGKK-----KVSVS----------ATPGKTKHFQT--IF-LTPTITLCDCPGL 138 (141)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC-----EEEEC----------CCCCCCCCEEE--EE-ECCCEEEEECCCC
T ss_conf 776268997788866999999985886-----68765----------99941576689--99-6899999989886
No 362
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=96.36 E-value=0.0097 Score=37.19 Aligned_cols=53 Identities=25% Similarity=0.357 Sum_probs=30.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCC
Q ss_conf 49998546898778899999983961423220000038857798709606467999998997999972898
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPG 91 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPG 91 (624)
.++|||---.|||||+.+|+...-+. +. ..=|+|=..+ .+.. +..|.++||||
T Consensus 104 ~v~ivG~PNVGKSSlIN~L~g~k~~~-----vs----------~~PG~Tr~~q--~i~~-~~~i~liDTPG 156 (157)
T cd01858 104 SVGFIGYPNVGKSSIINTLRSKKVCK-----VA----------PIPGETKVWQ--YITL-MKRIYLIDCPG 156 (157)
T ss_pred EEEEEECCCCCHHHHHHHHHCCCEEE-----EC----------CCCCEEEEEE--EEEE-CCCEEEEECCC
T ss_conf 99998258853368898872673588-----65----------9883377779--9996-89999996909
No 363
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=96.36 E-value=0.0077 Score=37.85 Aligned_cols=86 Identities=23% Similarity=0.164 Sum_probs=45.9
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC--CCCHHHHHHHHHHH-HHHCCCCHHHCCHHHHHHHHHC
Q ss_conf 17899997687886478999999997299789999754366--74025689999988-8622673011042668878865
Q gi|254780233|r 107 ESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRS--DARADEVINEVFDL-FSALDATDAQLDFPILYGSGRF 183 (624)
Q Consensus 107 DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~--~a~~~~v~~ei~dl-f~~l~a~de~ld~Pv~~~Sa~~ 183 (624)
--+++|||+.+=+..=-..+++. ..+.+.++++||+|.- .....++..-+... +...+..-+ -|...||+.
T Consensus 36 ~lVv~VvDi~Df~~S~~~~l~~~--~~~~~v~lV~NK~DLLp~~~~~~~~~~~~~~~~~~~~~~~~~----~v~lvSa~~ 109 (190)
T cd01855 36 ALVVHVVDIFDFPGSLIPRLRLF--GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPK----DVILISAKK 109 (190)
T ss_pred CEEEEEEECCCCCCCCCHHHHHH--CCCCCEEEEEEHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCC----CEEEEECCC
T ss_conf 45999975435764446557986--179868999981551788765888898999997501599843----179976657
Q ss_pred CEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 91646742233486413555321024
Q gi|254780233|r 184 GWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 184 G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
|| |++.|++.|-++.
T Consensus 110 ~~-----------gi~~L~~~i~~~~ 124 (190)
T cd01855 110 GW-----------GVEELINAIKKLA 124 (190)
T ss_pred CC-----------CHHHHHHHHHHHH
T ss_conf 86-----------9899999999974
No 364
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=96.33 E-value=0.07 Score=31.56 Aligned_cols=53 Identities=17% Similarity=0.289 Sum_probs=31.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCC--C-EECCCCHHHHHCCCEEEEEEE
Q ss_conf 499985468987788999999839614232200--0-003885779870960646799
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVS--E-RVMDCNDLEKERGITILAKVT 75 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~--~-~vmD~~~~EreRGITI~a~~~ 75 (624)
.+||+|+.++|||||...|+..--. ..|.+. . -+.+....+..+.|++..+..
T Consensus 36 ~v~ivG~sGsGKSTLl~ll~g~~~p--~~G~I~idg~di~~~~~~~~r~~i~~v~Q~~ 91 (207)
T cd03369 36 KIGIVGRTGAGKSTLILALFRFLEA--EEGKIEIDGIDISTIPLEDLRSSLTIIPQDP 91 (207)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCC--CCCEEEECCEECCCCCHHHHHHHCEEEECCC
T ss_conf 9999999998799999999987288--8878999999954079999995153770356
No 365
>KOG0074 consensus
Probab=96.28 E-value=0.038 Score=33.27 Aligned_cols=114 Identities=18% Similarity=0.257 Sum_probs=70.6
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECC-EEEEEECCCCCCC
Q ss_conf 024314999854689877889999998396142322000003885779870960646799999899-7999972898754
Q gi|254780233|r 16 YMQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWND-VRINIVDTPGHAD 94 (624)
Q Consensus 16 ~~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~-~~iNiiDTPGH~D 94 (624)
-..|| |...|--.+||||+..+| ++. |-..+-+-.|..+ .+++|.+ +++|+-|--|..-
T Consensus 15 ~rEir-illlGldnAGKTT~LKqL---~sE------------D~~hltpT~GFn~----k~v~~~g~f~LnvwDiGGqr~ 74 (185)
T KOG0074 15 RREIR-ILLLGLDNAGKTTFLKQL---KSE------------DPRHLTPTNGFNT----KKVEYDGTFHLNVWDIGGQRG 74 (185)
T ss_pred CCEEE-EEEEECCCCCCHHHHHHH---CCC------------CHHHCCCCCCCCE----EEEEECCCEEEEEEECCCCCC
T ss_conf 46478-999722777613088887---137------------8333156688524----787624707888885278665
Q ss_pred CHHHHHHHHHHHCEEEEEEECCCCCCH-HHHHHHHHHH----HCCCCEEEEEECCCCCCC
Q ss_conf 079999998742178999976878864-7899999999----729978999975436674
Q gi|254780233|r 95 FGGEVERILCMVESVVVLVDAAEGPMP-QTKFVVGKAL----KIGLRPIVVVNKVDRSDA 149 (624)
Q Consensus 95 F~gEVer~l~~~DgaiLvVdA~eGv~~-QT~~vl~~A~----~~~l~~IvvINKiDr~~a 149 (624)
--+=-..--.-+|+.+.|+|..+--.- .+-..+-..+ -..+|..+|-||-|+--|
T Consensus 75 IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdllta 134 (185)
T KOG0074 75 IRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTA 134 (185)
T ss_pred CCHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHH
T ss_conf 544566555305548999847736768998899999852312200001001225678763
No 366
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=96.27 E-value=0.089 Score=30.85 Aligned_cols=82 Identities=11% Similarity=0.168 Sum_probs=40.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCC--CE-ECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHH
Q ss_conf 499985468987788999999839614232200--00-038857798709606467999998997999972898754079
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVS--ER-VMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGG 97 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~--~~-vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~g 97 (624)
-|||+|..++|||||+..|+..-.. ..|.+. .. +.+....+..+-|++..+...+.....+-|| +|+..---.
T Consensus 49 ~vaIvG~sGsGKSTL~~ll~gl~~p--~~G~I~idg~di~~~~~~~lr~~i~~v~Q~~~lf~~Ti~~Ni--~~~~~~~~~ 124 (257)
T cd03288 49 KVGICGRTGSGKSSLSLAFFRMVDI--FDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNL--DPECKCTDD 124 (257)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC--CCCEEEECCEEHHHCCHHHHHHHEEEEECCCCCCCCHHHHCC--CCCCCCCHH
T ss_conf 9999999998199999999605667--888899998996879999997505799456734361355413--756676899
Q ss_pred HHHHHHHHH
Q ss_conf 999998742
Q gi|254780233|r 98 EVERILCMV 106 (624)
Q Consensus 98 EVer~l~~~ 106 (624)
++..++..+
T Consensus 125 ~i~~al~~~ 133 (257)
T cd03288 125 RLWEALEIA 133 (257)
T ss_pred HHHHHHHHH
T ss_conf 999999996
No 367
>COG1162 Predicted GTPases [General function prediction only]
Probab=96.25 E-value=0.005 Score=39.07 Aligned_cols=15 Identities=20% Similarity=0.344 Sum_probs=7.1
Q ss_pred CCCCCCCCCCCCCCC
Q ss_conf 455432222332101
Q gi|254780233|r 285 AGDIVSIAGLVKATV 299 (624)
Q Consensus 285 AGDIvaIaGl~~~~i 299 (624)
-|.|+--.|+.++.+
T Consensus 217 gG~iiDTPGf~~~~l 231 (301)
T COG1162 217 GGWIIDTPGFRSLGL 231 (301)
T ss_pred CCEEEECCCCCCCCC
T ss_conf 988972899771474
No 368
>PRK10867 signal recognition particle protein; Provisional
Probab=96.21 E-value=0.04 Score=33.14 Aligned_cols=132 Identities=24% Similarity=0.272 Sum_probs=70.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCC-CCCEECCCC---HHHHHC------CCEEEEEEEE-------------E
Q ss_conf 4999854689877889999998396142322-000003885---779870------9606467999-------------9
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQR-VSERVMDCN---DLEKER------GITILAKVTS-------------I 77 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~-v~~~vmD~~---~~EreR------GITI~a~~~~-------------~ 77 (624)
-|-++|--++||||.+-.|-++-.. +.+. +-=-.+|.. ..||=+ ||.+...... .
T Consensus 102 VIm~vGLqGsGKTTT~aKLA~~lk~--k~~k~vllvaaDt~RpaA~eQL~~la~~~~v~~~~~~~~~dp~~ia~~a~~~a 179 (453)
T PRK10867 102 VVLMAGLQGAGKTTSVGKLGKFLRE--KHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEA 179 (453)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHH
T ss_conf 9999746888518589999999997--38983798558877058999999999851980436788998899999999999
Q ss_pred EECCEEEEEECCCCC--CC--CHHHHHHHHHHH--CEEEEEEECCCCCCHHHHHHHHHHHHCCCCE-EEEEECCCCCCCC
Q ss_conf 989979999728987--54--079999998742--1789999768788647899999999729978-9999754366740
Q gi|254780233|r 78 VWNDVRINIVDTPGH--AD--FGGEVERILCMV--ESVVVLVDAAEGPMPQTKFVVGKALKIGLRP-IVVVNKVDRSDAR 150 (624)
Q Consensus 78 ~~~~~~iNiiDTPGH--~D--F~gEVer~l~~~--DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~-IvvINKiDr~~a~ 150 (624)
.-+++-+-||||-|- .| --.|...+-+++ |-.+||+||.-| |.-....++....++. =++++|+|. +|+
T Consensus 180 k~~~~DvvivDTAGRl~~d~~Lm~El~~i~~~~~P~e~llV~Da~~G---Q~a~~~a~~F~~~~~~~gvIlTKlDg-dar 255 (453)
T PRK10867 180 KLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTG---QDAANTAKAFNEALPLTGVVLTKVDG-DAR 255 (453)
T ss_pred HHCCCCEEEEECCCCHHCCHHHHHHHHHHHHHHCCCCEEEEEECCCC---HHHHHHHHHHHHHCCCCEEEEECCCC-CCC
T ss_conf 97799999997876012108889999999876378713797432235---66899999999855987078750467-876
Q ss_pred HHHHHHHH
Q ss_conf 25689999
Q gi|254780233|r 151 ADEVINEV 158 (624)
Q Consensus 151 ~~~v~~ei 158 (624)
---+++-.
T Consensus 256 GG~alS~~ 263 (453)
T PRK10867 256 GGAALSIR 263 (453)
T ss_pred CHHHHHHH
T ss_conf 13898999
No 369
>PRK10416 cell division protein FtsY; Provisional
Probab=96.17 E-value=0.03 Score=33.99 Aligned_cols=124 Identities=15% Similarity=0.176 Sum_probs=50.4
Q ss_pred CCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEECCHHHHHHHHHHHHHCCEEEE
Q ss_conf 66542157861268655444432101788999999973028379999859997599996364568888741233480330
Q gi|254780233|r 317 IDPPTVTMTFGVNDSPLAGTEGDKVTSRMIRDRLFKEAEGNIALKIEESSSKDAFFVSGRGELQLAVLIETMRREGFELA 396 (624)
Q Consensus 317 i~~Ptis~~f~vn~sP~ag~eg~~~ts~~l~~rL~ke~~~dvsL~ve~~~~~~~~~v~GrGeLHL~IliE~mRREG~E~~ 396 (624)
-..|.+-|.+++|-+ ||--|..||...|.+. +-+.-+- ..|.|+-.. --||.++-++. |..+.
T Consensus 292 ~~~P~VIl~vGvNG~------GKTTTigKLA~~~~~~---gkkVlla---A~DTfRaAA--ieQL~~w~~r~---~v~vi 354 (499)
T PRK10416 292 GKTPFVILMVGVNGV------GKTTTIGKLARQFEQQ---GKSVMLA---AGDTFRAAA--VEQLQVWGQRN---NIPVI 354 (499)
T ss_pred CCCCEEEEEECCCCC------CHHHHHHHHHHHHHHC---CCCEEEE---EECCCCHHH--HHHHHHHHCCC---CCEEE
T ss_conf 999879999747878------7898999999999977---9953788---406675689--99999984245---73698
Q ss_pred CCCC-----EEEEEEECCEECCEEEEEEEECCHHH--HHHHHHHHHHCCCEECCCCCCCCCEEEEEEE
Q ss_conf 1574-----48998208826041688887313233--1078998874354010421368984999999
Q gi|254780233|r 397 VSRP-----RVVIKKEGDSLLEPIEEVVIDVDEEH--SGAVVQKMTLHKSEMIELRPSGTGRVRLVFL 457 (624)
Q Consensus 397 vs~P-----~V~~k~~dg~~lEPie~v~I~vp~ey--~G~Vi~~l~~RrG~i~~m~~~~~g~~~l~~~ 457 (624)
-..+ .|+|.-..-..-+-|.-+.||+---. --..|+.|.+=+-.+....+.....+.|.-.
T Consensus 355 ~~~~g~Dpa~V~~dai~~a~~~~~DvviiDTAGRl~~~~~LM~EL~ki~rvi~k~~~~aP~e~lLVlD 422 (499)
T PRK10416 355 AQHTGADSASVIFDAIQAAKARNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTID 422 (499)
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE
T ss_conf 36899997999999999999729998998577643260999999999999997237899974899977
No 370
>PRK13796 GTP-binding protein YqeH; Provisional
Probab=96.12 E-value=0.02 Score=35.10 Aligned_cols=98 Identities=21% Similarity=0.101 Sum_probs=56.6
Q ss_pred CCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC-CC-CCHHHHHHHHHHHHHHCCCCHH
Q ss_conf 540799999987421789999768788647899999999729978999975436-67-4025689999988862267301
Q gi|254780233|r 93 ADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDR-SD-ARADEVINEVFDLFSALDATDA 170 (624)
Q Consensus 93 ~DF~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr-~~-a~~~~v~~ei~dlf~~l~a~de 170 (624)
.||.-.+......-.-++.|||..+=+..=-.. +.... -+.|+++++||+|. |. ...+++.+-+...+.+.+..-.
T Consensus 59 ~d~~~~l~~i~~~~~lvv~VvDi~Df~gS~~~~-l~~~i-g~~~vilV~NKvDLLP~~~~~~~~~~wv~~~~~~~gl~~~ 136 (367)
T PRK13796 59 DDFLRLLNGIGDSDALVVNVVDIFDFNGSWIPG-LHRFV-GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPV 136 (367)
T ss_pred HHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHH-HHHHH-CCCCEEEEEECHHCCCCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 999999986253670899999744577651350-89871-8984899998233388767878999999999997599855
Q ss_pred HCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHC
Q ss_conf 1042668878865916467422334864135553210
Q gi|254780233|r 171 QLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVD 207 (624)
Q Consensus 171 ~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~ 207 (624)
+ |...||+.|| |++.|++.|-+
T Consensus 137 --d--V~lvSak~g~-----------gv~~L~~~i~~ 158 (367)
T PRK13796 137 --D--VVLISAQKGQ-----------GIDELLDAIEK 158 (367)
T ss_pred --C--EEEEECCCCC-----------CHHHHHHHHHH
T ss_conf --2--8999465788-----------99999999998
No 371
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.12 E-value=0.052 Score=32.39 Aligned_cols=129 Identities=26% Similarity=0.311 Sum_probs=70.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCC---HHHHHC------CCEEEEEEE----------E---EE
Q ss_conf 4999854689877889999998396142322000003885---779870------960646799----------9---99
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCN---DLEKER------GITILAKVT----------S---IV 78 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~---~~EreR------GITI~a~~~----------~---~~ 78 (624)
.|-.+|--++||||.+..|-++-.- ++-.+-=-.+|.. ..||=+ |+..+.... + +.
T Consensus 102 vImmvGLQGsGKTTt~~KLA~~lkk--~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ak 179 (451)
T COG0541 102 VILMVGLQGSGKTTTAGKLAKYLKK--KGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKAK 179 (451)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHH--CCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHH
T ss_conf 8999815679748689999999997--49945898505678689999999998609853167788997999999999999
Q ss_pred ECCEEEEEECCCCC--CC--CHHHHHHHHHH--HCEEEEEEECCCCCCHHHHHHHHHHHHCCCCE-EEEEECCCCCCCCH
Q ss_conf 89979999728987--54--07999999874--21789999768788647899999999729978-99997543667402
Q gi|254780233|r 79 WNDVRINIVDTPGH--AD--FGGEVERILCM--VESVVVLVDAAEGPMPQTKFVVGKALKIGLRP-IVVVNKVDRSDARA 151 (624)
Q Consensus 79 ~~~~~iNiiDTPGH--~D--F~gEVer~l~~--~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~-IvvINKiDr~~a~~ 151 (624)
-+.+-+-||||-|- .| .--|...+-.. -|-.||||||.-| |.-....+|....+++ =|+++|+|-+ ||-
T Consensus 180 ~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G---QdA~~~A~aF~e~l~itGvIlTKlDGd-aRG 255 (451)
T COG0541 180 EEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG---QDAVNTAKAFNEALGITGVILTKLDGD-ARG 255 (451)
T ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCC---HHHHHHHHHHHHHCCCCEEEEECCCCC-CCC
T ss_conf 7499889996887330309999999999855398748998764445---678999999866269864999714678-762
Q ss_pred HHHH
Q ss_conf 5689
Q gi|254780233|r 152 DEVI 155 (624)
Q Consensus 152 ~~v~ 155 (624)
--++
T Consensus 256 GaAL 259 (451)
T COG0541 256 GAAL 259 (451)
T ss_pred HHHH
T ss_conf 2888
No 372
>pfam01656 CbiA CobQ/CobB/MinD/ParA nucleotide binding domain. This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family.
Probab=96.12 E-value=0.028 Score=34.12 Aligned_cols=69 Identities=23% Similarity=0.271 Sum_probs=48.9
Q ss_pred CCEEEEEECCCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEE-EEEECCCCCCCC
Q ss_conf 99799997289875407999999874217899997687886478999999997299789-999754366740
Q gi|254780233|r 80 NDVRINIVDTPGHADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPI-VVVNKVDRSDAR 150 (624)
Q Consensus 80 ~~~~iNiiDTPGH~DF~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~I-vvINKiDr~~a~ 150 (624)
++|-+-|||||+..+.. +..++..+|.+++++....=-...++..+....+.+++.+ +++||.|+.+.+
T Consensus 111 ~~~D~viiD~pp~~~~~--~~~al~~ad~vivv~~p~~~sl~~~~~l~~~~~~l~~~~~gvV~N~~~~~~~~ 180 (212)
T pfam01656 111 LAYDYVIIDGAPGLGEL--TANALVAADILVVPIEPEGVAVLGAQRLLELVERLGLKILGVVLNKVDRGDER 180 (212)
T ss_pred CCCCEEEEECCCCCCHH--HHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHH
T ss_conf 04998999479975599--99999839989999489769999999999999985996229999148899836
No 373
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=96.10 E-value=0.035 Score=33.51 Aligned_cols=23 Identities=9% Similarity=0.039 Sum_probs=15.9
Q ss_pred EECCCCCCCCCEEEEECCCCCCE
Q ss_conf 96078051598899960578501
Q gi|254780233|r 239 RIHSGTIKSNQNIKALSPDGALV 261 (624)
Q Consensus 239 RV~sGtlk~Gd~V~vl~~~g~~~ 261 (624)
+=.|=++++|+.+.++.++|..+
T Consensus 358 ~~is~~I~~Ge~vaIVG~SGsGK 380 (593)
T PRK10790 358 KNINLSVPSRNFVALVGHTGSGK 380 (593)
T ss_pred HCCCCCCCCCCEEEEECCCCCCH
T ss_conf 26010448997899879998868
No 374
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=96.08 E-value=0.051 Score=32.48 Aligned_cols=138 Identities=22% Similarity=0.267 Sum_probs=70.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCC------CCCCCCCCCEECCCCHHHHHCCC---EEEEE--EEEEE------------
Q ss_conf 999854689877889999998396------14232200000388577987096---06467--99999------------
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGV------FRDNQRVSERVMDCNDLEKERGI---TILAK--VTSIV------------ 78 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~------~~~~~~v~~~vmD~~~~EreRGI---TI~a~--~~~~~------------ 78 (624)
..|-|--++|||||.-.||.+-.- .++-|++. -|..++-..-+. -+... +|++.
T Consensus 4 tvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvg---ID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~ 80 (323)
T COG0523 4 TVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVG---IDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLR 80 (323)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCC---CCCCCCCCCCCCCEEEECCCCEEEECCCHHHHHHHHHHH
T ss_conf 99811677998999999985458980799985574022---167764134897579836970787034215899999985
Q ss_pred -ECCEEEEEECCCCCCCCHHHHH--------HHHHHHCEEEEEEECCCCCCHHH---HHHHHHHHHCCCCEEEEEECCCC
Q ss_conf -8997999972898754079999--------99874217899997687886478---99999999729978999975436
Q gi|254780233|r 79 -WNDVRINIVDTPGHADFGGEVE--------RILCMVESVVVLVDAAEGPMPQT---KFVVGKALKIGLRPIVVVNKVDR 146 (624)
Q Consensus 79 -~~~~~iNiiDTPGH~DF~gEVe--------r~l~~~DgaiLvVdA~eGv~~QT---~~vl~~A~~~~l~~IvvINKiDr 146 (624)
-.....=+|-|-|=+|=.-=+. +..--.|+++-||||.......- .+...+. .-.=++++||.|.
T Consensus 81 ~~~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qi---a~AD~ivlNK~Dl 157 (323)
T COG0523 81 RRDRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQL---AFADVIVLNKTDL 157 (323)
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCCCEEECCEEEEEEHHHHHHHHHHHHHHHHHHH---HHCCEEEEECCCC
T ss_conf 2568998999688777869999986065122454041336999847886545677999999999---8679999836456
Q ss_pred CCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 6740256899999888622673
Q gi|254780233|r 147 SDARADEVINEVFDLFSALDAT 168 (624)
Q Consensus 147 ~~a~~~~v~~ei~dlf~~l~a~ 168 (624)
-++. . ++.+......++..
T Consensus 158 v~~~--~-l~~l~~~l~~lnp~ 176 (323)
T COG0523 158 VDAE--E-LEALEARLRKLNPR 176 (323)
T ss_pred CCHH--H-HHHHHHHHHHHCCC
T ss_conf 8988--9-99999999975999
No 375
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=96.08 E-value=0.064 Score=31.79 Aligned_cols=51 Identities=18% Similarity=0.262 Sum_probs=28.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCC-CCCCCCC--C-EECCCCHHHHHCCCEEEEEE
Q ss_conf 49998546898778899999983961-4232200--0-00388577987096064679
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVF-RDNQRVS--E-RVMDCNDLEKERGITILAKV 74 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~-~~~~~v~--~-~vmD~~~~EreRGITI~a~~ 74 (624)
-+||+|+.++|||||+..|+ |.. ...|++. . -+.+....+..+-|+...+.
T Consensus 30 ~vaivG~sGsGKSTll~ll~---gl~~p~~G~I~i~g~di~~~~~~~~r~~i~~v~Q~ 84 (237)
T cd03252 30 VVGIVGRSGSGKSTLTKLIQ---RFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQE 84 (237)
T ss_pred EEEEECCCCCHHHHHHHHHH---CCCCCCCCEEEECCEECCCCCHHHHHHHCEEEECC
T ss_conf 99999999985999999996---77657987899999995518999998601899587
No 376
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.05 E-value=0.12 Score=29.95 Aligned_cols=93 Identities=24% Similarity=0.352 Sum_probs=51.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCC-CCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCC-HHH
Q ss_conf 4999854689877889999998396142-32200000388577987096064679999989979999728987540-799
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRD-NQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADF-GGE 98 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~-~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF-~gE 98 (624)
-+||+|+-++|||||...| +|...- .|. +.|++..+ .-.|-+.++ +||
T Consensus 27 iv~ilGpNGaGKSTllk~i---~G~l~p~~G~-------------------------i~~~g~~~--~~~pq~~~LSGGq 76 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKIL---AGQLIPNGDN-------------------------DEWDGITP--VYKPQYIDLSGGE 76 (177)
T ss_pred EEEEECCCCCCHHHHHHHH---HCCCCCCCCC-------------------------EEECCCCE--ECCCCCCCCCHHH
T ss_conf 9999899999999999999---6886788994-------------------------66668612--2155515079899
Q ss_pred HHHHHH----HHCEEEEEEE-CCCCCCHHHHHHH----HHHHHCCCCEEEEEEC
Q ss_conf 999987----4217899997-6878864789999----9999729978999975
Q gi|254780233|r 99 VERILC----MVESVVVLVD-AAEGPMPQTKFVV----GKALKIGLRPIVVVNK 143 (624)
Q Consensus 99 Ver~l~----~~DgaiLvVd-A~eGv~~QT~~vl----~~A~~~~l~~IvvINK 143 (624)
-.|+.= +.+.-+++.| -+.|.-++++..+ ++..+.+-+.+++|..
T Consensus 77 rQRv~iAral~~~p~lllLDEPts~LD~~~r~~i~~~ik~l~~~~~~Tvl~vsH 130 (177)
T cd03222 77 LQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEH 130 (177)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 999999999823999999748865389999999999999999965977999858
No 377
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.04 E-value=0.067 Score=31.68 Aligned_cols=114 Identities=19% Similarity=0.266 Sum_probs=59.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCC-CCCCCC--C-EECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCC
Q ss_conf 1499985468987788999999839614-232200--0-00388577987096064679999989979999728987540
Q gi|254780233|r 20 RNIAIIAHVDHGKTTLVDELLKQSGVFR-DNQRVS--E-RVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADF 95 (624)
Q Consensus 20 RNiaIiaHvDhGKTTL~d~LL~~sG~~~-~~~~v~--~-~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF 95 (624)
..+||+|..++|||||...|+ |... ..|++. . -+.+.+..+..+.|....+...+......-|| =.
T Consensus 29 ~~vaIvG~sGsGKSTLl~ll~---gl~~p~~G~i~i~g~~~~~~~~~~~~~~i~~v~Q~~~lf~~ti~eNi-------LS 98 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLIL---GLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI-------LS 98 (173)
T ss_pred CEEEEECCCCCHHHHHHHHHH---CCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCEECCCCHHHHC-------CC
T ss_conf 999999999980999999996---66667999899999993328998984208999088836777589976-------76
Q ss_pred HHHHHHHH--H--HHCEEEEEEE-CCCCCCHHHHHHHHHHHH-C--CCCEEEEEEC
Q ss_conf 79999998--7--4217899997-687886478999999997-2--9978999975
Q gi|254780233|r 96 GGEVERIL--C--MVESVVVLVD-AAEGPMPQTKFVVGKALK-I--GLRPIVVVNK 143 (624)
Q Consensus 96 ~gEVer~l--~--~~DgaiLvVd-A~eGv~~QT~~vl~~A~~-~--~l~~IvvINK 143 (624)
+||-.|.. + +.+.-+|+.| ++.+.-+.|+..+..++. . .-+.+++|..
T Consensus 99 GGQkQRvalARal~~~p~ililDEpts~LD~~~e~~i~~~l~~l~~~~~Tvi~vtH 154 (173)
T cd03246 99 GGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAH 154 (173)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 99999999999982799999996876689989999999999978648989999847
No 378
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.01 E-value=0.075 Score=31.35 Aligned_cols=53 Identities=17% Similarity=0.288 Sum_probs=29.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCC-CCCCCC--C-EECCCCHHHHHCCCEEEEEEEE
Q ss_conf 499985468987788999999839614-232200--0-0038857798709606467999
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFR-DNQRVS--E-RVMDCNDLEKERGITILAKVTS 76 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~-~~~~v~--~-~vmD~~~~EreRGITI~a~~~~ 76 (624)
-+||+|+.++|||||+..|+ |... ..|.+. . -+.+.......+.|....++..
T Consensus 29 ~v~ivG~sGsGKSTLl~ll~---gl~~p~~G~I~idg~di~~~~~~~~r~~i~~v~Q~~~ 85 (236)
T cd03253 29 KVAIVGPSGSGKSTILRLLF---RFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTV 85 (236)
T ss_pred EEEEECCCCCCHHHHHHHHC---CCCCCCCCEEEECCEECCCCCHHHHHHCEEEEECCCE
T ss_conf 99999999998999999974---3854887489999999231899999723789950780
No 379
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.01 E-value=0.061 Score=31.97 Aligned_cols=19 Identities=16% Similarity=0.356 Sum_probs=8.0
Q ss_pred EEEEECCCCCCEEECCCCCE
Q ss_conf 89996057850121145530
Q gi|254780233|r 250 NIKALSPDGALVEVGRVSKI 269 (624)
Q Consensus 250 ~V~vl~~~g~~~~~~kV~~L 269 (624)
-|.++.|.|-. |+--+.+|
T Consensus 212 vvalVGPTGVG-KTTTiAKL 230 (412)
T PRK05703 212 VVALVGPTGVG-KTTTLAKL 230 (412)
T ss_pred EEEEECCCCCC-HHHHHHHH
T ss_conf 69998888875-67699999
No 380
>KOG0780 consensus
Probab=96.00 E-value=0.046 Score=32.73 Aligned_cols=123 Identities=20% Similarity=0.258 Sum_probs=66.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCC--CCCCCCCCC--EECCCCHHHH--H-CCCEEEEEEEE-------------EEECC
Q ss_conf 999854689877889999998396--142322000--0038857798--7-09606467999-------------99899
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGV--FRDNQRVSE--RVMDCNDLEK--E-RGITILAKVTS-------------IVWND 81 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~--~~~~~~v~~--~vmD~~~~Er--e-RGITI~a~~~~-------------~~~~~ 81 (624)
|-++|--++||||.+-.|.++-.- ++-.-...| |.--++.+++ + -+|-+....+- |.-++
T Consensus 104 imfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fKke~ 183 (483)
T KOG0780 104 IMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFKKEN 183 (483)
T ss_pred EEEEECCCCCCCEEHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 99983057886300899999998468724577602245306899998767407706840366555899999999888639
Q ss_pred EEEEEECCCCCCCC----HHHHHHHHHH--HCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCC
Q ss_conf 79999728987540----7999999874--2178999976878864789999999972997-89999754366
Q gi|254780233|r 82 VRINIVDTPGHADF----GGEVERILCM--VESVVVLVDAAEGPMPQTKFVVGKALKIGLR-PIVVVNKVDRS 147 (624)
Q Consensus 82 ~~iNiiDTPGH~DF----~gEVer~l~~--~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~-~IvvINKiDr~ 147 (624)
+-+-|+||-|-.-= --|..-+-++ -|-+|+|+||.-| |.-+-..+|....+- --|.|+|||-.
T Consensus 184 fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiG---Qaae~Qa~aFk~~vdvg~vIlTKlDGh 253 (483)
T KOG0780 184 FDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIG---QAAEAQARAFKETVDVGAVILTKLDGH 253 (483)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCC---HHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 7289982787301248999999999851598738999856200---767999998877615403799722567
No 381
>PRK12312 infB translation initiation factor IF-2; Provisional
Probab=95.95 E-value=0.016 Score=35.84 Aligned_cols=10 Identities=50% Similarity=0.810 Sum_probs=5.8
Q ss_pred ECCCCCCCCH
Q ss_conf 7289875407
Q gi|254780233|r 87 VDTPGHADFG 96 (624)
Q Consensus 87 iDTPGH~DF~ 96 (624)
+--=||+|-|
T Consensus 120 VtimGHVDHG 129 (610)
T PRK12312 120 VTIMGHVDHG 129 (610)
T ss_pred EEEECCCCCC
T ss_conf 9996772577
No 382
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.87 E-value=0.12 Score=30.12 Aligned_cols=51 Identities=14% Similarity=0.241 Sum_probs=29.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCC-CCCCC--C-EECCCCHHHHHCCCEEEEEE
Q ss_conf 4999854689877889999998396142-32200--0-00388577987096064679
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRD-NQRVS--E-RVMDCNDLEKERGITILAKV 74 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~-~~~v~--~-~vmD~~~~EreRGITI~a~~ 74 (624)
.+||+|+.++|||||...|+ |...- .|.+. . -+-+....+..+.|.+..+.
T Consensus 32 ~v~ivG~sGsGKSTLl~ll~---gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~ 86 (221)
T cd03244 32 KVGIVGRTGSGKSSLLLALF---RLVELSSGSILIDGVDISKIGLHDLRSRISIIPQD 86 (221)
T ss_pred EEEEECCCCCCHHHHHHHHH---CCCCCCCCEEEECCEECCCCCHHHHHHHEEEEECC
T ss_conf 99999999998999999996---79718984899999996619999997407999303
No 383
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.85 E-value=0.069 Score=31.60 Aligned_cols=19 Identities=16% Similarity=0.324 Sum_probs=9.1
Q ss_pred EEEECCCCCCEEECCCCCEE
Q ss_conf 99960578501211455301
Q gi|254780233|r 251 IKALSPDGALVEVGRVSKIL 270 (624)
Q Consensus 251 V~vl~~~g~~~~~~kV~~L~ 270 (624)
+.++.|.|- .|+..|.||-
T Consensus 179 ~alVGPTGV-GKTTTiAKLA 197 (404)
T PRK06995 179 FALVGPTGV-GKTTTTAKLA 197 (404)
T ss_pred EEEECCCCC-CHHHHHHHHH
T ss_conf 898668887-6375899999
No 384
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=95.83 E-value=0.018 Score=35.38 Aligned_cols=16 Identities=25% Similarity=0.426 Sum_probs=6.7
Q ss_pred EEEEEECCHHHHHHHH
Q ss_conf 8888731323310789
Q gi|254780233|r 416 EEVVIDVDEEHSGAVV 431 (624)
Q Consensus 416 e~v~I~vp~ey~G~Vi 431 (624)
+++.|.+=..-+|.|.
T Consensus 665 ~~v~~~ii~~~vG~it 680 (839)
T PRK05306 665 DEVKVRIIHSGVGAIT 680 (839)
T ss_pred CCEEEEEEECCCCCCC
T ss_conf 7378999951677776
No 385
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=95.81 E-value=0.06 Score=32.00 Aligned_cols=24 Identities=25% Similarity=0.130 Sum_probs=17.6
Q ss_pred EEECCCCCCCCCEEEEECCCCCCE
Q ss_conf 996078051598899960578501
Q gi|254780233|r 238 GRIHSGTIKSNQNIKALSPDGALV 261 (624)
Q Consensus 238 gRV~sGtlk~Gd~V~vl~~~g~~~ 261 (624)
.+=.|=++++|+.+.++.++|..+
T Consensus 351 L~~isl~i~~Ge~vaiVG~SGsGK 374 (585)
T PRK13657 351 VEDVSFEAKPGQTVAIVGPTGAGK 374 (585)
T ss_pred CCCCEEEECCCCEEEEECCCCCCH
T ss_conf 367038975998899988989869
No 386
>PTZ00243 ABC transporter; Provisional
Probab=95.81 E-value=0.079 Score=31.21 Aligned_cols=21 Identities=33% Similarity=0.580 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 999854689877889999998
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQ 42 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~ 42 (624)
++|+|.|++|||||..+||-.
T Consensus 689 ~~IvG~vGSGKSSLL~aiLGE 709 (1560)
T PTZ00243 689 TVVLGATGSGKSTLLQSLLSQ 709 (1560)
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899998799999999688
No 387
>KOG0410 consensus
Probab=95.76 E-value=0.073 Score=31.42 Aligned_cols=144 Identities=22% Similarity=0.313 Sum_probs=81.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCC-------
Q ss_conf 4999854689877889999998396142322000003885779870960646799999899799997289875-------
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHA------- 93 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~------- 93 (624)
-||++|--.+|||||+.+|- .+... ..||..-+.|--+.++ .+. .+..+-+.||-|+.
T Consensus 180 viavVGYTNaGKsTLikaLT-~Aal~-----p~drLFATLDpT~h~a--------~Lp-sg~~vlltDTvGFisdLP~~L 244 (410)
T KOG0410 180 VIAVVGYTNAGKSTLIKALT-KAALY-----PNDRLFATLDPTLHSA--------HLP-SGNFVLLTDTVGFISDLPIQL 244 (410)
T ss_pred EEEEEEECCCCHHHHHHHHH-HHHCC-----CCCHHHEECCCHHHHC--------CCC-CCCEEEEEECHHHHHHCCHHH
T ss_conf 28999634766889999987-50058-----3000110125313430--------079-986799960346665474999
Q ss_pred --CCHHHHHHHHHHHCEEEEEEECCC-CCCHHHHHHHHHHHHCCCCEE-------EEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf --407999999874217899997687-886478999999997299789-------9997543667402568999998886
Q gi|254780233|r 94 --DFGGEVERILCMVESVVVLVDAAE-GPMPQTKFVVGKALKIGLRPI-------VVVNKVDRSDARADEVINEVFDLFS 163 (624)
Q Consensus 94 --DF~gEVer~l~~~DgaiLvVdA~e-Gv~~QT~~vl~~A~~~~l~~I-------vvINKiDr~~a~~~~v~~ei~dlf~ 163 (624)
-|..-.|- ..-+|-.|-|||-.. -.+.|-..|+.-..+.++|.+ =|=||+|.+.+-+
T Consensus 245 vaAF~ATLee-VaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~------------ 311 (410)
T KOG0410 245 VAAFQATLEE-VAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEV------------ 311 (410)
T ss_pred HHHHHHHHHH-HHHCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCC------------
T ss_conf 9999999998-752344899861579668888989999997469984777767874212356655667------------
Q ss_pred HCCCCHHHCCHHHHHHHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 2267301104266887886591646742233486413555321024
Q gi|254780233|r 164 ALDATDAQLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 164 ~l~a~de~ld~Pv~~~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
.+++.++ ++.|++.| .|++.|++++-+.+
T Consensus 312 ---e~E~n~~---v~isaltg-----------dgl~el~~a~~~kv 340 (410)
T KOG0410 312 ---EEEKNLD---VGISALTG-----------DGLEELLKAEETKV 340 (410)
T ss_pred ---CCCCCCC---CCCCCCCC-----------CCHHHHHHHHHHHH
T ss_conf ---5355785---14301567-----------54799999888876
No 388
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=95.60 E-value=0.013 Score=36.36 Aligned_cols=72 Identities=21% Similarity=0.425 Sum_probs=33.3
Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHH-------HHHHHHHHHHCCCCE--EEEEECCCCCCCCHHH
Q ss_conf 9999728987540799999987421789999768788647-------899999999729978--9999754366740256
Q gi|254780233|r 83 RINIVDTPGHADFGGEVERILCMVESVVVLVDAAEGPMPQ-------TKFVVGKALKIGLRP--IVVVNKVDRSDARADE 153 (624)
Q Consensus 83 ~iNiiDTPGH~DF~gEVer~l~~~DgaiLvVdA~eGv~~Q-------T~~vl~~A~~~~l~~--IvvINKiDr~~a~~~~ 153 (624)
-+.+.|-||.. .-++.+.++-- -+++|+.=.+ ..|+ .+++.+.+.+.|+++ |+++--. -+...++
T Consensus 70 VvDi~Df~gS~--~~~l~~~~~~~-~v~lV~NK~D-LLP~~~~~~~i~~wv~~~~~~~gl~~~~V~lvSa~--~g~gi~~ 143 (360)
T TIGR03597 70 VVDIFDFEGSL--IPELKRFVGGN-PVLLVGNKID-LLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSAK--KGNGIDE 143 (360)
T ss_pred EEECCCCCCCH--HHHHHHHHCCC-CEEEEEEHHH-CCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECC--CCCCHHH
T ss_conf 98641477653--46499983898-5899998054-28876787999999999999859983668999688--8989999
Q ss_pred HHHHHHH
Q ss_conf 8999998
Q gi|254780233|r 154 VINEVFD 160 (624)
Q Consensus 154 v~~ei~d 160 (624)
+++.+.+
T Consensus 144 l~~~i~~ 150 (360)
T TIGR03597 144 LLDKIKK 150 (360)
T ss_pred HHHHHHH
T ss_conf 9999998
No 389
>pfam09547 Spore_IV_A Stage IV sporulation protein A (spore_IV_A). SpoIVA is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=95.58 E-value=0.16 Score=29.11 Aligned_cols=125 Identities=24% Similarity=0.295 Sum_probs=64.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCC--CCEECCCCHHHHHCCCEEEEE--------EEEEEEC---CEEEEEE
Q ss_conf 49998546898778899999983961423220--000038857798709606467--------9999989---9799997
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRV--SERVMDCNDLEKERGITILAK--------VTSIVWN---DVRINIV 87 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v--~~~vmD~~~~EreRGITI~a~--------~~~~~~~---~~~iNii 87 (624)
-|+++|-|-.||||..-+..-.. ++...... .+|..|..|+-- -|-||... .+.+..+ ..++-+|
T Consensus 19 YiGVVGPVRTGKSTFIKrFMe~~-VlPnI~~~~~keRa~DELPQS~-aGktIMTTEPKFVP~eAv~I~l~~~~~~kVRLi 96 (492)
T pfam09547 19 YIGVVGPVRTGKSTFIKRFMELL-VLPNIENEYKKERAKDELPQSG-SGKTIMTTEPKFVPNEAVEIKLDDGLKFKVRLV 96 (492)
T ss_pred EEEEECCCCCCCHHHHHHHHHHH-CCCCCCCHHHHHHHHCCCCCCC-CCCCEECCCCCCCCCCCEEEEECCCCEEEEEEE
T ss_conf 99962672067366999999985-4688898778776430377678-998133368876653104888369844899999
Q ss_pred CCCCCCCC---HHHHHHHHHHH----------------------------CEEEEEEECCCCCCH------HHHHHHHHH
Q ss_conf 28987540---79999998742----------------------------178999976878864------789999999
Q gi|254780233|r 88 DTPGHADF---GGEVERILCMV----------------------------ESVVVLVDAAEGPMP------QTKFVVGKA 130 (624)
Q Consensus 88 DTPGH~DF---~gEVer~l~~~----------------------------DgaiLvVdA~eGv~~------QT~~vl~~A 130 (624)
||-|+.== |.+=+-..+|+ =|.++.-|++=|=-| -.++|....
T Consensus 97 DCVGY~V~gA~Gy~e~~~~RmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dIpRe~Y~eAEervI~EL 176 (492)
T pfam09547 97 DCVGYIVEGALGYEEEDGPRMVKTPWFDEEIPFEEAAEIGTRKVITEHSTIGLVVTTDGSITDIPRENYVEAEERVIEEL 176 (492)
T ss_pred EECCEEECCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHCCCCEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 65256755755554689751304898788878688876465413315771449995688756766444235799999999
Q ss_pred HHCCCCEEEEEECCCCC
Q ss_conf 97299789999754366
Q gi|254780233|r 131 LKIGLRPIVVVNKVDRS 147 (624)
Q Consensus 131 ~~~~l~~IvvINKiDr~ 147 (624)
.+.|.|-|+++|-.+-.
T Consensus 177 k~i~KPFiillNs~~P~ 193 (492)
T pfam09547 177 KEIGKPFIILLNSQRPY 193 (492)
T ss_pred HHHCCCEEEEEECCCCC
T ss_conf 97099889998389989
No 390
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=95.55 E-value=0.041 Score=33.05 Aligned_cols=50 Identities=26% Similarity=0.510 Sum_probs=32.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCC
Q ss_conf 499985468987788999999839614232200000388577987096064679999989979999728987540
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADF 95 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF 95 (624)
=++|+|--++|||||+++|+... ++||+.+ ..+.+..+. -=+|+||--.+
T Consensus 4 Il~ivG~k~SGKTTLie~lv~~L--------------------~~~G~rV----a~iKH~hh~-~~~D~~GkDs~ 53 (161)
T COG1763 4 ILGIVGYKNSGKTTLIEKLVRKL--------------------KARGYRV----ATVKHAHHD-FDLDKPGKDTY 53 (161)
T ss_pred EEEEEECCCCCHHHHHHHHHHHH--------------------HHCCCEE----EEEEECCCC-CCCCCCCCCCC
T ss_conf 89999627997342899999999--------------------7579379----999865877-77788987661
No 391
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=95.55 E-value=0.024 Score=34.58 Aligned_cols=75 Identities=24% Similarity=0.267 Sum_probs=56.4
Q ss_pred CCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCC-CCCCC
Q ss_conf 11101367773499999607805159889996057850121145530110366534441125455432222332-10122
Q gi|254780233|r 223 GTILEKDPFLGRIVTGRIHSGTIKSNQNIKALSPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSIAGLVK-ATVAD 301 (624)
Q Consensus 223 V~~i~~d~y~Gria~gRV~sGtlk~Gd~V~vl~~~g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIvaIaGl~~-~~iGD 301 (624)
|--..-|...|.+++.=|.+|+|+.||.+.+ |. ..+||..++...| ..+++|.+++.|.+.|+.+ +..||
T Consensus 5 ViEs~~d~g~G~vatviV~~GtL~~Gd~iv~----G~--~~gkVr~~~d~~g---~~v~~a~Ps~pV~i~G~~~~P~aGd 75 (95)
T cd03701 5 VIESKLDKGRGPVATVIVQNGTLKKGDVIVA----GG--TYGKIRTMVDENG---KALLEAGPSTPVEILGLKDVPKAGD 75 (95)
T ss_pred EEEEEECCCCCCEEEEEEECCCCCCCCEEEE----CC--CEEEEEEEECCCC---CCCCEECCCCCEEEECCCCCCCCCC
T ss_conf 9999976998837999993486555999997----98--7878999999999---9998886998499957789999999
Q ss_pred EECCC
Q ss_conf 11055
Q gi|254780233|r 302 TFCDP 306 (624)
Q Consensus 302 TL~~~ 306 (624)
-+-..
T Consensus 76 ~~~~v 80 (95)
T cd03701 76 GVLVV 80 (95)
T ss_pred EEEEE
T ss_conf 99997
No 392
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.52 E-value=0.053 Score=32.35 Aligned_cols=20 Identities=25% Similarity=0.252 Sum_probs=14.4
Q ss_pred CCCCCCCCEEEEECCCCCCE
Q ss_conf 78051598899960578501
Q gi|254780233|r 242 SGTIKSNQNIKALSPDGALV 261 (624)
Q Consensus 242 sGtlk~Gd~V~vl~~~g~~~ 261 (624)
|=++++|+.+.++.++|..+
T Consensus 361 sl~i~~Ge~vaiVG~SGsGK 380 (575)
T PRK11160 361 SLQIKAGEKVALLGRTGCGK 380 (575)
T ss_pred EEEECCCCEEEEECCCCCCH
T ss_conf 58976998899988999759
No 393
>CHL00189 infB translation initiation factor 2; Provisional
Probab=95.48 E-value=0.029 Score=34.03 Aligned_cols=17 Identities=24% Similarity=0.180 Sum_probs=8.8
Q ss_pred EEECCEEEEEECCCCCC
Q ss_conf 99899799997289875
Q gi|254780233|r 77 IVWNDVRINIVDTPGHA 93 (624)
Q Consensus 77 ~~~~~~~iNiiDTPGH~ 93 (624)
+..++-.-|+-+++.+.
T Consensus 108 ~~~~~d~~~~~~~~~~~ 124 (770)
T CHL00189 108 IHIDDDYDNFSDGSSNS 124 (770)
T ss_pred EECCCCHHHHCCCCCCC
T ss_conf 41574011002365446
No 394
>TIGR00101 ureG urease accessory protein UreG; InterPro: IPR004400 This is a GTP hydrolase for assembly of the nickel metallocentre of urease. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. They play a central role in nitrogen metabolism.; GO: 0005524 ATP binding, 0016151 nickel ion binding.
Probab=95.42 E-value=0.03 Score=33.96 Aligned_cols=112 Identities=21% Similarity=0.346 Sum_probs=65.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCC--------E-ECCCCHHHHHCCCEEEEEEE---E------------
Q ss_conf 4999854689877889999998396142322000--------0-03885779870960646799---9------------
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSE--------R-VMDCNDLEKERGITILAKVT---S------------ 76 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~--------~-vmD~~~~EreRGITI~a~~~---~------------ 76 (624)
.|+|.|-|++|||.|+|+|.+.-..--...-+.+ . +.-..-+.++|=+-+-..-| +
T Consensus 3 ~iG~~GPvG~Gktal~e~l~~~~~~~y~~av~tndiyt~eda~fl~~~~~l~~~ri~GvetGGCPhtairedas~nl~a~ 82 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRELAKKYDLAVITNDIYTQEDAEFLVKNSVLPPERILGVETGGCPHTAIREDASLNLEAV 82 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 66650477764689999999988740667787311001246888876412662226774158987300100021218899
Q ss_pred ----EEECCEEEEEECCCCC---CCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-----EEEEEECC
Q ss_conf ----9989979999728987---54079999998742178999976878864789999999972997-----89999754
Q gi|254780233|r 77 ----IVWNDVRINIVDTPGH---ADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLR-----PIVVVNKV 144 (624)
Q Consensus 77 ----~~~~~~~iNiiDTPGH---~DF~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~-----~IvvINKi 144 (624)
-.|.+..+-+|..-|. +-| ....+|-.+.|+|..+|-. .-+.|=| -+++|||+
T Consensus 83 ~~~~~rf~~~~~~~~esGGdnl~atf------~P~l~d~t~~vidva~G~k---------iPrkGGPGit~sdllvink~ 147 (199)
T TIGR00101 83 EELEARFPDLELVFIESGGDNLSATF------SPELADLTIFVIDVAEGDK---------IPRKGGPGITRSDLLVINKI 147 (199)
T ss_pred HHHHHCCCCEEEEEEECCCCCCEEEC------CCCEEEEEEEEEEECCCCC---------CCCCCCCCCCCHHEEEEECC
T ss_conf 98862156404899832886200002------7640236788997205874---------56778898530012243200
Q ss_pred CCC
Q ss_conf 366
Q gi|254780233|r 145 DRS 147 (624)
Q Consensus 145 Dr~ 147 (624)
|..
T Consensus 148 dla 150 (199)
T TIGR00101 148 DLA 150 (199)
T ss_pred CCC
T ss_conf 125
No 395
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=95.39 E-value=0.051 Score=32.47 Aligned_cols=133 Identities=13% Similarity=0.139 Sum_probs=68.2
Q ss_pred EEEEC-CCCCCHHHHHHHHHHHCCCCCCCCC-CCCEECCCCHH-------H--HHCCC-----EEEEEEE-E--------
Q ss_conf 99985-4689877889999998396142322-00000388577-------9--87096-----0646799-9--------
Q gi|254780233|r 22 IAIIA-HVDHGKTTLVDELLKQSGVFRDNQR-VSERVMDCNDL-------E--KERGI-----TILAKVT-S-------- 76 (624)
Q Consensus 22 iaIia-HvDhGKTTL~d~LL~~sG~~~~~~~-v~~~vmD~~~~-------E--reRGI-----TI~a~~~-~-------- 76 (624)
|++.. -.++||||++=.| ++.+...|. | .+.|.+++ | .+.|. .|.+..- +
T Consensus 4 i~~~~~KGG~GKtT~a~~l---a~~~~~~g~~v--~~iD~Dpq~s~~~W~e~a~~~~~~~~~~~v~~~~~~~~l~~~~e~ 78 (231)
T PRK13849 4 LTFCSFKGGAGKTTALMGL---CAALASDGKRV--ALFEADENRPLTRWKENALRSNTWDPACEVYAADELPLLEAAYED 78 (231)
T ss_pred EEEEECCCCCCHHHHHHHH---HHHHHHCCCEE--EEEECCCCCCHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHH
T ss_conf 9996189987699999999---99999789959--999689986889999876525898877523405652578999988
Q ss_pred EEECCEEEEEECCCCCCCCHHHHHHHHHHHCEEEEEEECCCCCC---HHHHHHHH---HHHHCCCCEEEEEECCCCCCCC
Q ss_conf 99899799997289875407999999874217899997687886---47899999---9997299789999754366740
Q gi|254780233|r 77 IVWNDVRINIVDTPGHADFGGEVERILCMVESVVVLVDAAEGPM---PQTKFVVG---KALKIGLRPIVVVNKVDRSDAR 150 (624)
Q Consensus 77 ~~~~~~~iNiiDTPGH~DF~gEVer~l~~~DgaiLvVdA~eGv~---~QT~~vl~---~A~~~~l~~IvvINKiDr~~a~ 150 (624)
..-.+|.+-||||||+++- .+..++..+|-+|+=+-...-=. .+|-..+. ++....+|.-|+.|++-- +.
T Consensus 79 ~~~~~~D~VIIDtpg~~s~--~~~~Ai~~ADLVLIP~qPSp~D~~~a~~tv~~i~~~~~~~~~~ip~~vlltRv~a--~~ 154 (231)
T PRK13849 79 AELQGFDYALADTHGGSSE--LNNTIIASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIPTAILRQRVPV--GR 154 (231)
T ss_pred HHHCCCCEEEECCCCCCCH--HHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCH--HH
T ss_conf 7536998899818997758--9999999789899779998667999999999999999972878865666540504--54
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 2568999998886
Q gi|254780233|r 151 ADEVINEVFDLFS 163 (624)
Q Consensus 151 ~~~v~~ei~dlf~ 163 (624)
.......+.+.|.
T Consensus 155 ~t~~~~~i~~~le 167 (231)
T PRK13849 155 LTTSQRAMSDMLE 167 (231)
T ss_pred HCHHHHHHHHHHH
T ss_conf 0688999999996
No 396
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=95.31 E-value=0.038 Score=33.33 Aligned_cols=55 Identities=25% Similarity=0.373 Sum_probs=30.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCC
Q ss_conf 4999854689877889999998396142322000003885779870960646799999899799997289875
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHA 93 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~ 93 (624)
+++|+|.---|||||+.+|.....+ .+.. .-|+|=.-+ .+.. +..+.++||||-.
T Consensus 120 ~v~vVG~PNVGKSSlIN~L~~~k~~-----~v~~----------~PG~Tr~~q--~i~l-~~~i~llDtPGvl 174 (276)
T TIGR03596 120 RAMIVGIPNVGKSTLINRLAGKKVA-----KVGN----------RPGVTKGQQ--WIKL-SDGLELLDTPGIL 174 (276)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCEE-----EECC----------CCCCCCEEE--EEEE-CCCEEEECCCCCC
T ss_conf 8999727987589999987367258-----7779----------654210258--9995-7977996688745
No 397
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=95.28 E-value=0.034 Score=33.62 Aligned_cols=75 Identities=21% Similarity=0.371 Sum_probs=58.9
Q ss_pred CCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCC--CCCCCCCC
Q ss_conf 1111013677734999996078051598899960578501211455301103665344411254554322--22332101
Q gi|254780233|r 222 IGTILEKDPFLGRIVTGRIHSGTIKSNQNIKALSPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSI--AGLVKATV 299 (624)
Q Consensus 222 ~V~~i~~d~y~Gria~gRV~sGtlk~Gd~V~vl~~~g~~~~~~kV~~L~~~~G~~r~~v~ea~AGDIvaI--aGl~~~~i 299 (624)
.+|++. -.|.++=+||.+|.++++..+.+++ +++....++|.+|..+ +.+|+++..|.=|.| .+..++..
T Consensus 7 ~vF~~~---k~~~IAGc~V~~G~i~~~~~vrv~R-~~~~i~~G~I~sLk~~----K~~V~eV~~G~ECGi~l~~~~d~~~ 78 (84)
T cd03692 7 AVFKIS---KVGNIAGCYVTDGKIKRNAKVRVLR-NGEVIYEGKISSLKRF----KDDVKEVKKGYECGITLENFNDIKV 78 (84)
T ss_pred EEEECC---CCEEEEEEEEEECEEECCCEEEEEE-CCEEEEEEEEHHHHHC----CCCCCEECCCCEEEEEECCCCCCCC
T ss_conf 999989---9608989999809997299599998-9999998366656003----4355787688186799578476777
Q ss_pred CCEEC
Q ss_conf 22110
Q gi|254780233|r 300 ADTFC 304 (624)
Q Consensus 300 GDTL~ 304 (624)
||.|=
T Consensus 79 GD~ie 83 (84)
T cd03692 79 GDIIE 83 (84)
T ss_pred CCEEE
T ss_conf 98980
No 398
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein B; InterPro: IPR004435 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cisdithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism , . In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which coverts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner . MoCF is the active co-factor in eukaryotic and some prokaryotic molybdoenzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdoenzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF . Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 () of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) . The MobB domain is similar to that of the urease accessory protein UreG and the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocentres of their respective target enzymes. It is involved in the final step of molybdenum-cofactor biosynthesis. While its precise function has not been identified it is thought to be involved in the transfer of a guanine dinucleotide moiety to molybdopterin, as it shows GTP-binding and weak GTPase activity . The MobB protein (P32125 from SWISSPROT) from Escherichia coli, which is comprised of this domain, is a homodimer . Each molecule is composed of two distinct regions - an outer region comprised of 6 beta-strands and three alpha helices, and an inner region comprised of a two-strand beta hairpin followed by an alpha helix. These regions require interaction with the second monomer to allow proper folding to occur. The two monomers are intertwined and form an extensive 16-stranded beta-sheet. While the active site could not be positively identified, the presence of highly conserved residues suggests the substrate binding site occurs in the central solvent channel.; GO: 0005525 GTP binding, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=95.28 E-value=0.034 Score=33.60 Aligned_cols=21 Identities=38% Similarity=0.668 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 999854689877889999998
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQ 42 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~ 42 (624)
++|+|--|+|||||+++|...
T Consensus 2 ~~i~G~k~SGKTtL~~~l~~~ 22 (165)
T TIGR00176 2 LQIVGYKNSGKTTLIERLVKA 22 (165)
T ss_pred EEEEEECCCCHHHHHHHHHHH
T ss_conf 378962588678999999999
No 399
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.24 E-value=0.17 Score=29.02 Aligned_cols=138 Identities=18% Similarity=0.215 Sum_probs=69.5
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCC---HHHHHC------CCEEEEEEEE---------E
Q ss_conf 024314999854689877889999998396142322000003885---779870------9606467999---------9
Q gi|254780233|r 16 YMQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCN---DLEKER------GITILAKVTS---------I 77 (624)
Q Consensus 16 ~~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~---~~EreR------GITI~a~~~~---------~ 77 (624)
..+...|.++|--+.||||.+-.|-++-. .+..++.=-.+|+. ..||=+ |+.+....-. +
T Consensus 72 ~~~~~vI~lvG~~G~GKTTT~AKLA~~~~--~~~~kV~lia~DtyR~aA~eQLk~~a~~l~v~~~~~~~~~~~~~~~~~~ 149 (270)
T PRK06731 72 EKEVQTIALIGPTGVGKTTTLAKMAWQFH--GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYF 149 (270)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHH--HCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHHHH
T ss_conf 79981899988898988999999999998--6799089998388888899999999998199535458878999999999
Q ss_pred -EECCEEEEEECCCCC--CC--CHHHHHHHHHHH--CEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
Q ss_conf -989979999728987--54--079999998742--17899997687886478999999997299789999754366740
Q gi|254780233|r 78 -VWNDVRINIVDTPGH--AD--FGGEVERILCMV--ESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDAR 150 (624)
Q Consensus 78 -~~~~~~iNiiDTPGH--~D--F~gEVer~l~~~--DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~ 150 (624)
+-.++.+-||||.|. .| --.|..+.++.+ |-.+||+||.-|-+.... +...-...++ .=++++|+|- .++
T Consensus 150 ~~~~~~DvilIDTAGR~~~d~~lm~el~~~~~~~~p~~~~Lvldas~~~~~~~~-~~~~f~~~~i-~gvIlTKlD~-ta~ 226 (270)
T PRK06731 150 KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIE-IITNFKDIHI-DGIVFTKFDE-TAS 226 (270)
T ss_pred HHHCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHH-HHHHHCCCCC-CEEEEECCCC-CCC
T ss_conf 997699999997999871469999999998606389879999868777699999-9998077999-8899965358-997
Q ss_pred HHHHHHHH
Q ss_conf 25689999
Q gi|254780233|r 151 ADEVINEV 158 (624)
Q Consensus 151 ~~~v~~ei 158 (624)
.-.+++-.
T Consensus 227 gG~als~~ 234 (270)
T PRK06731 227 SGELLKIP 234 (270)
T ss_pred CCHHHHHH
T ss_conf 72999999
No 400
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB; InterPro: IPR014149 This entry represents TrbB, a protein, which is encoded in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer . TrbB is a homologue of the vir system VirB11 ATPase , and the Flp pilus system ATPase TadA ..
Probab=95.22 E-value=0.017 Score=35.57 Aligned_cols=23 Identities=39% Similarity=0.651 Sum_probs=19.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 14999854689877889999998
Q gi|254780233|r 20 RNIAIIAHVDHGKTTLVDELLKQ 42 (624)
Q Consensus 20 RNiaIiaHvDhGKTTL~d~LL~~ 42 (624)
|||.|+|=-++|||||+.++|-+
T Consensus 140 ~NIlv~GGTGSGKTTLaNAlla~ 162 (315)
T TIGR02782 140 KNILVVGGTGSGKTTLANALLAE 162 (315)
T ss_pred CCEEEECCCCCCHHHHHHHHHHH
T ss_conf 98899814588579999999998
No 401
>PRK13760 putative RNA-associated protein; Provisional
Probab=95.21 E-value=0.14 Score=29.48 Aligned_cols=66 Identities=15% Similarity=0.123 Sum_probs=54.0
Q ss_pred EEEEEECCHHHHHHHHHHHHHCCCEECCCCCCCCCEEEEEEEECHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 8888731323310789988743540104213689849999996133565688998853276167888
Q gi|254780233|r 416 EEVVIDVDEEHSGAVVQKMTLHKSEMIELRPSGTGRVRLVFLSPTRGLIGYQSQLMTDTRGTAIMNR 482 (624)
Q Consensus 416 e~v~I~vp~ey~G~Vi~~l~~RrG~i~~m~~~~~g~~~l~~~vP~r~l~g~~~~l~s~T~G~g~~~~ 482 (624)
+++.|.+|.+|.|.+.+.|.+ -|.+..-+..++|.-....++|+--.-.|...+.+.|+|.|....
T Consensus 164 ~~l~v~iP~~~a~~a~~~l~~-~g~v~kEeW~~dGs~~~vv~ipaG~~~~~~~~l~~~TkG~~~~ki 229 (233)
T PRK13760 164 ARIAVKIPGEYAGKAYGELAK-FGEIKKEEWQSDGSWVAVLEIPAGLQDEFYDKLNKLTKGEAETKI 229 (233)
T ss_pred EEEEEEECHHHHHHHHHHHHH-HCCCCCEECCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEE
T ss_conf 799999678998899999997-472010101589848999998975489999999875688347999
No 402
>PRK09563 rbgA ribosomal biogenesis GTPase; Reviewed
Probab=95.15 E-value=0.045 Score=32.79 Aligned_cols=20 Identities=35% Similarity=0.498 Sum_probs=13.9
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 49998546898778899999
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELL 40 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL 40 (624)
+++|||.---|||||+.+|+
T Consensus 123 ~v~vvG~PNVGKSSlIN~L~ 142 (282)
T PRK09563 123 RAMIIGIPNVGKSTLINRLA 142 (282)
T ss_pred EEEEEECCCCCHHHHHHHHH
T ss_conf 89997069776799999874
No 403
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.11 E-value=0.068 Score=31.65 Aligned_cols=63 Identities=32% Similarity=0.461 Sum_probs=34.6
Q ss_pred EEEEEECCC-CCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCC
Q ss_conf 799997289-8754079999998742178999976878864789999999972997-89999754366
Q gi|254780233|r 82 VRINIVDTP-GHADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLR-PIVVVNKVDRS 147 (624)
Q Consensus 82 ~~iNiiDTP-GH~DF~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~-~IvvINKiDr~ 147 (624)
+.+-++||- |---|+ .++..-+|..|.|||..---.--.+++-+.|.+++++ +.+++||+|..
T Consensus 134 ~e~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 134 YEVVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred CCEEEEECCCCHHHHC---CCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCH
T ss_conf 7489996334566656---5632578779999578778888899999999871875499999503411
No 404
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.09 E-value=0.17 Score=29.10 Aligned_cols=100 Identities=22% Similarity=0.361 Sum_probs=48.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCC-CCCCCC--CE-ECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCC
Q ss_conf 1499985468987788999999839614-232200--00-0388577987096064679999989979999728987540
Q gi|254780233|r 20 RNIAIIAHVDHGKTTLVDELLKQSGVFR-DNQRVS--ER-VMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADF 95 (624)
Q Consensus 20 RNiaIiaHvDhGKTTL~d~LL~~sG~~~-~~~~v~--~~-vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF 95 (624)
..+||+|..++|||||...|+ |..+ ..|.+. .. +......+..+.|....++..+.-...+=|| +
T Consensus 29 e~i~ivG~sGsGKSTLl~ll~---gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~tv~eNi--------L 97 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLL---RLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI--------L 97 (171)
T ss_pred CEEEEECCCCCHHHHHHHHHH---CCCCCCCCEEEECCEECCCCCHHHHHHHEEEECCCCCCCCCCHHHHC--------C
T ss_conf 899999999983999999997---67758974899999998859989986318999666843757799977--------4
Q ss_pred -HHHHHHHH--H--HHCEEEEEEE-CCCCCCHHHHHHHHHH
Q ss_conf -79999998--7--4217899997-6878864789999999
Q gi|254780233|r 96 -GGEVERIL--C--MVESVVVLVD-AAEGPMPQTKFVVGKA 130 (624)
Q Consensus 96 -~gEVer~l--~--~~DgaiLvVd-A~eGv~~QT~~vl~~A 130 (624)
+||-.|+. + +.+.-+|+.| ++.+.-+.|+..+...
T Consensus 98 SgGq~Qri~lARal~~~p~illlDEpts~LD~~~~~~i~~~ 138 (171)
T cd03228 98 SGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEA 138 (171)
T ss_pred CHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHH
T ss_conf 48899999999999748998999577667998999999999
No 405
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.06 E-value=0.27 Score=27.65 Aligned_cols=35 Identities=26% Similarity=0.399 Sum_probs=24.6
Q ss_pred EEEEECCCCCCCCC----------EEEEECCCCCCHHHHHHHHHH
Q ss_conf 46531346802431----------499985468987788999999
Q gi|254780233|r 7 LFFIYGRLGYMQIR----------NIAIIAHVDHGKTTLVDELLK 41 (624)
Q Consensus 7 ~~~~~~~~~~~~IR----------NiaIiaHvDhGKTTL~d~LL~ 41 (624)
.-|.|+.-...=++ -+||+|..++|||||...|+-
T Consensus 6 vsf~Y~~~~~~~L~~i~l~i~~Ge~~aivG~sGsGKSTLl~~l~G 50 (178)
T cd03247 6 VSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTG 50 (178)
T ss_pred EEEECCCCCCCCEECEEEEECCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf 999879999863325589986999999999998759999999986
No 406
>PRK13796 GTP-binding protein YqeH; Provisional
Probab=95.00 E-value=0.029 Score=34.02 Aligned_cols=73 Identities=21% Similarity=0.431 Sum_probs=35.0
Q ss_pred EEEEEECCCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHH-------HHHHHHHHHCCCCE--EEEEECCCCCCCCHH
Q ss_conf 799997289875407999999874217899997687886478-------99999999729978--999975436674025
Q gi|254780233|r 82 VRINIVDTPGHADFGGEVERILCMVESVVVLVDAAEGPMPQT-------KFVVGKALKIGLRP--IVVVNKVDRSDARAD 152 (624)
Q Consensus 82 ~~iNiiDTPGH~DF~gEVer~l~~~DgaiLvVdA~eGv~~QT-------~~vl~~A~~~~l~~--IvvINKiDr~~a~~~ 152 (624)
+-+.+.|-||. |.-++.|.+.--+ +++|+.=.+ ..|.. ..+-+.+.+.|+++ |++|-- +-+...+
T Consensus 77 ~VvDi~Df~gS--~~~~l~~~ig~~~-vilV~NKvD-LLP~~~~~~~~~~wv~~~~~~~gl~~~dV~lvSa--k~g~gv~ 150 (367)
T PRK13796 77 NVVDIFDFNGS--WIPGLHRFVGNNP-VLLVGNKAD-LLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISA--QKGQGID 150 (367)
T ss_pred EEEECCCCCCC--HHHHHHHHHCCCC-EEEEEECHH-CCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEC--CCCCCHH
T ss_conf 99974457765--1350898718984-899998233-3887678789999999999975998552899946--5788999
Q ss_pred HHHHHHHH
Q ss_conf 68999998
Q gi|254780233|r 153 EVINEVFD 160 (624)
Q Consensus 153 ~v~~ei~d 160 (624)
+.++.+..
T Consensus 151 ~L~~~i~~ 158 (367)
T PRK13796 151 ELLDAIEK 158 (367)
T ss_pred HHHHHHHH
T ss_conf 99999998
No 407
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=95.00 E-value=0.053 Score=32.33 Aligned_cols=54 Identities=15% Similarity=0.156 Sum_probs=30.6
Q ss_pred CEEEEEEECCCCCCHHHHHHHH--HHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 1789999768788647899999--99972997899997543667402568999998886
Q gi|254780233|r 107 ESVVVLVDAAEGPMPQTKFVVG--KALKIGLRPIVVVNKVDRSDARADEVINEVFDLFS 163 (624)
Q Consensus 107 DgaiLvVdA~eGv~~QT~~vl~--~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~ 163 (624)
|-+|-|+||..-.-..-...-. +...-+.|.|+++||.|.-+ .+..++-.+.|.
T Consensus 1 DvVleV~DAR~Plss~np~l~~~~~~~~~~K~~ilVlNK~DL~~---~~~~~~W~~~~~ 56 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVP---KENVEKWLKYLR 56 (172)
T ss_pred CEEEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEECHHCCC---HHHHHHHHHHHH
T ss_conf 98999997037867688749999986069984899985232189---899999999998
No 408
>KOG3883 consensus
Probab=94.99 E-value=0.29 Score=27.53 Aligned_cols=113 Identities=19% Similarity=0.265 Sum_probs=71.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCCC--CCCCCEECCCCHHHHHCCCEEEEEEEEEEECC---EEEEEECCCCCC
Q ss_conf 3149998546898778899999983961423--22000003885779870960646799999899---799997289875
Q gi|254780233|r 19 IRNIAIIAHVDHGKTTLVDELLKQSGVFRDN--QRVSERVMDCNDLEKERGITILAKVTSIVWND---VRINIVDTPGHA 93 (624)
Q Consensus 19 IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~--~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~---~~iNiiDTPGH~ 93 (624)
.--+.+.|--.-|||.+.++|||--.+.... ...+|.+ ..+++-.. -.+.|-||-|-.
T Consensus 9 ~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY-----------------~~svet~rgarE~l~lyDTaGlq 71 (198)
T KOG3883 9 VCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIY-----------------VASVETDRGAREQLRLYDTAGLQ 71 (198)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHE-----------------EEEEECCCCHHHEEEEEECCCCC
T ss_conf 4079997774522899999998516788976666344224-----------------67640687810168886524455
Q ss_pred CCHHHHHH-HHHHHCEEEEEEECCCCCCHHHHHHHHHHHHC-----CCCEEEEEECCCCCC
Q ss_conf 40799999-98742178999976878864789999999972-----997899997543667
Q gi|254780233|r 94 DFGGEVER-ILCMVESVVVLVDAAEGPMPQTKFVVGKALKI-----GLRPIVVVNKVDRSD 148 (624)
Q Consensus 94 DF~gEVer-~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~-----~l~~IvvINKiDr~~ 148 (624)
+.--|.-| -++.+|+-+||-+..+----|--..+++-.+. .+|++|.-||.||.+
T Consensus 72 ~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~ 132 (198)
T KOG3883 72 GGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAE 132 (198)
T ss_pred CCHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHCCC
T ss_conf 7600202767105765799963799889889999999986255655122899730010136
No 409
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=94.98 E-value=0.15 Score=29.41 Aligned_cols=24 Identities=21% Similarity=0.081 Sum_probs=16.2
Q ss_pred EEECCCCCCCCCEEEEECCCCCCE
Q ss_conf 996078051598899960578501
Q gi|254780233|r 238 GRIHSGTIKSNQNIKALSPDGALV 261 (624)
Q Consensus 238 gRV~sGtlk~Gd~V~vl~~~g~~~ 261 (624)
.+=.+=++++|+.+.++.++|..+
T Consensus 331 L~~isl~I~~Ge~vaIVG~SGsGK 354 (569)
T PRK10789 331 LENVNFTLKPGQMLGICGPTGSGK 354 (569)
T ss_pred HCCCCCEECCCCEEEEECCCCCCH
T ss_conf 307656888997899879999987
No 410
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=94.90 E-value=0.039 Score=33.24 Aligned_cols=66 Identities=20% Similarity=0.225 Sum_probs=45.3
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 46898778899999983961423220000038857798709606467999998997999972898754079999998742
Q gi|254780233|r 27 HVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVERILCMV 106 (624)
Q Consensus 27 HvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVer~l~~~ 106 (624)
-.+.||||++-.|-+. +.+.|. .=-+.|.+++ |-+-|||||++.+- +...++.++
T Consensus 8 KGGvGKtt~~~~la~~---~a~~g~-~vl~iD~DpQ-------------------yD~iiIDtpp~~~~--~~~~al~~a 62 (104)
T cd02042 8 KGGVGKTTTAVNLAAA---LARRGK-RVLLIDLDPQ-------------------YDYIIIDTPPSLGL--LTRNALAAA 62 (104)
T ss_pred CCCCCHHHHHHHHHHH---HHHCCC-EEEEEECCCC-------------------CCEEEEECCCCCCH--HHHHHHHHC
T ss_conf 9987689999999999---997799-2999977988-------------------88899979499989--999999978
Q ss_pred CEEEEEEECCC
Q ss_conf 17899997687
Q gi|254780233|r 107 ESVVVLVDAAE 117 (624)
Q Consensus 107 DgaiLvVdA~e 117 (624)
|.+++.+....
T Consensus 63 D~viiP~~p~~ 73 (104)
T cd02042 63 DLVLIPVQPSP 73 (104)
T ss_pred CEEEEECCCCH
T ss_conf 99999836988
No 411
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=94.88 E-value=0.058 Score=32.08 Aligned_cols=32 Identities=16% Similarity=0.230 Sum_probs=14.4
Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHCEEEEEEECCC
Q ss_conf 99997289875407999999874217899997687
Q gi|254780233|r 83 RINIVDTPGHADFGGEVERILCMVESVVVLVDAAE 117 (624)
Q Consensus 83 ~iNiiDTPGH~DF~gEVer~l~~~DgaiLvVdA~e 117 (624)
-+-+.|-||+.. -++.+..+ .--+++|+.=.+
T Consensus 41 VvDi~Df~~S~~--~~l~~~~~-~~~v~lV~NK~D 72 (190)
T cd01855 41 VVDIFDFPGSLI--PRLRLFGG-NNPVILVGNKID 72 (190)
T ss_pred EEECCCCCCCCC--HHHHHHCC-CCCEEEEEEHHH
T ss_conf 975435764446--55798617-986899998155
No 412
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=94.81 E-value=0.19 Score=28.76 Aligned_cols=64 Identities=17% Similarity=0.327 Sum_probs=34.0
Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCC---CEEEEEECCCCCC
Q ss_conf 99997289875407999999874217899997687886478999999997299---7899997543667
Q gi|254780233|r 83 RINIVDTPGHADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGL---RPIVVVNKVDRSD 148 (624)
Q Consensus 83 ~iNiiDTPGH~DF~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l---~~IvvINKiDr~~ 148 (624)
-+-++|-| |.-+ .-....|.-+|..++|++-.=.-.-+++..+....+.+. +++.++||...+.
T Consensus 219 ~~vV~Dlp-~~~~-~~t~~vL~~Sd~iviv~e~sl~slR~ak~lld~l~~~r~~~~~p~lv~n~~~~~~ 285 (366)
T COG4963 219 DFVVVDLP-NIWT-DWTRQVLSGSDEIVIVAEPSLASLRNAKELLDELKRLRPNDPKPILVLNRVGVPK 285 (366)
T ss_pred CEEEECCC-CCCC-HHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC
T ss_conf 83897189-7662-5899998628849999636389899999999999973779889568865227888
No 413
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.74 E-value=0.33 Score=27.11 Aligned_cols=16 Identities=38% Similarity=0.468 Sum_probs=7.7
Q ss_pred CHHHHHHHHHHHHHHC
Q ss_conf 0256899999888622
Q gi|254780233|r 150 RADEVINEVFDLFSAL 165 (624)
Q Consensus 150 ~~~~v~~ei~dlf~~l 165 (624)
..++++.++..+...+
T Consensus 84 ~~~~~~~ei~~l~~~~ 99 (388)
T PRK12723 84 SIEDVIKEVKSLKNEL 99 (388)
T ss_pred CHHHHHHHHHHHHHHH
T ss_conf 2789999999999986
No 414
>PRK09601 translation-associated GTPase; Reviewed
Probab=94.71 E-value=0.29 Score=27.47 Aligned_cols=87 Identities=22% Similarity=0.249 Sum_probs=48.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCC-----C-C----EECCCCHHHHHCCCEEEEEEEEEEEC--CEEEEEEC
Q ss_conf 49998546898778899999983961423220-----0-0----00388577987096064679999989--97999972
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRV-----S-E----RVMDCNDLEKERGITILAKVTSIVWN--DVRINIVD 88 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v-----~-~----~vmD~~~~EreRGITI~a~~~~~~~~--~~~iNiiD 88 (624)
.++|||---.|||||-.+| |+.-...+.- + + .|-| +|--- +++.. -.++ --.++++|
T Consensus 4 kiGivGlPnvGKSTlFnal---T~~~~~~~nyPf~Ti~pn~g~v~VpD----~r~~~---l~~~~-~p~k~i~a~v~~vD 72 (364)
T PRK09601 4 KCGIVGLPNVGKSTLFNAL---TKAGAEAANYPFCTIEPNVGIVPVPD----PRLDK---LAEIV-KPKKIVPTTIEFVD 72 (364)
T ss_pred EEEEECCCCCCHHHHHHHH---HCCCCCCCCCCCCCCCCCEEEEECCC----HHHHH---HHHHH-CCCCEEEEEEEEEE
T ss_conf 4888779999889999999---67998645899888788006885785----45899---98762-87650112589996
Q ss_pred CCCCCCC-------HHHHHHHHHHHCEEEEEEECCCC
Q ss_conf 8987540-------79999998742178999976878
Q gi|254780233|r 89 TPGHADF-------GGEVERILCMVESVVVLVDAAEG 118 (624)
Q Consensus 89 TPGH~DF-------~gEVer~l~~~DgaiLvVdA~eG 118 (624)
.||-+-- +-..-.-++-+|+.+.||+|++-
T Consensus 73 iaGLv~gAs~G~GLGN~FL~~iR~~DaiihVVr~F~d 109 (364)
T PRK09601 73 IAGLVKGASKGEGLGNKFLANIREVDAIVHVVRCFED 109 (364)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCEEEEEEECCCC
T ss_conf 5776787534677428999988734756775000268
No 415
>COG1161 Predicted GTPases [General function prediction only]
Probab=94.66 E-value=0.096 Score=30.66 Aligned_cols=88 Identities=22% Similarity=0.220 Sum_probs=55.9
Q ss_pred EECCCCCCC-CHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 972898754-0799999987421789999768788647899999999729978999975436674025689999988862
Q gi|254780233|r 86 IVDTPGHAD-FGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLFSA 164 (624)
Q Consensus 86 iiDTPGH~D-F~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~ 164 (624)
|-+-|||-+ |--++...+.-+|.++-||||.+=.-....-+-+.. .+.+.++++||.|... ..+..+-...|..
T Consensus 14 i~~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v--~~k~~i~vlNK~DL~~---~~~~~~W~~~~~~ 88 (322)
T COG1161 14 IQWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIV--KEKPKLLVLNKADLAP---KEVTKKWKKYFKK 88 (322)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHH--CCCCCEEEEEHHHCCC---HHHHHHHHHHHHH
T ss_conf 2556775199999998753667658997431268888873067885--5788359985132489---9999999999986
Q ss_pred CCCCHHHCCHHHHHHHHHCC
Q ss_conf 26730110426688788659
Q gi|254780233|r 165 LDATDAQLDFPILYGSGRFG 184 (624)
Q Consensus 165 l~a~de~ld~Pv~~~Sa~~G 184 (624)
-. ..+.++.|++.+
T Consensus 89 ~~------~~~~~~v~~~~~ 102 (322)
T COG1161 89 EE------GIKPIFVSAKSR 102 (322)
T ss_pred CC------CCCCEEEECCCC
T ss_conf 47------986557643346
No 416
>KOG1486 consensus
Probab=94.63 E-value=0.11 Score=30.29 Aligned_cols=95 Identities=21% Similarity=0.389 Sum_probs=60.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCE-EEEEEEEEEECCEEEEEECCCCCCCC-
Q ss_conf 4314999854689877889999998396142322000003885779870960-64679999989979999728987540-
Q gi|254780233|r 18 QIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGIT-ILAKVTSIVWNDVRINIVDTPGHADF- 95 (624)
Q Consensus 18 ~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGIT-I~a~~~~~~~~~~~iNiiDTPGH~DF- 95 (624)
+-| +|+||--.-||+||...| +++-++...-+ .| ..+-.--++|++..|-++|-||-..=
T Consensus 62 daR-ValIGfPSVGKStlLs~i---T~T~SeaA~ye--------------FTTLtcIpGvi~y~ga~IQllDLPGIieGA 123 (364)
T KOG1486 62 DAR-VALIGFPSVGKSTLLSKI---TSTHSEAASYE--------------FTTLTCIPGVIHYNGANIQLLDLPGIIEGA 123 (364)
T ss_pred CEE-EEEECCCCCCHHHHHHHH---HCCHHHHHCCE--------------EEEEEEECCEEEECCCEEEEECCCCCCCCC
T ss_conf 737-999648874478788876---41102221102--------------467873031687668347996275300021
Q ss_pred ------HHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf ------7999999874217899997687886478999999997
Q gi|254780233|r 96 ------GGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALK 132 (624)
Q Consensus 96 ------~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~ 132 (624)
+-.|..+.+.+|-+|.|.||...- +-|..+.+-++
T Consensus 124 sqgkGRGRQviavArtaDlilMvLDatk~e--~qr~~le~ELe 164 (364)
T KOG1486 124 SQGKGRGRQVIAVARTADLILMVLDATKSE--DQREILEKELE 164 (364)
T ss_pred CCCCCCCCEEEEEEECCCEEEEEECCCCCH--HHHHHHHHHHH
T ss_conf 137887726888740365899995177615--67899999999
No 417
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=94.59 E-value=0.3 Score=27.36 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 499985468987788999999
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLK 41 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~ 41 (624)
.+||+|..++||||++.-|++
T Consensus 413 t~AlVG~SGsGKSTii~LL~R 433 (1467)
T PTZ00265 413 TYAFVGESGCGKSTILKLIER 433 (1467)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 799866888756679999963
No 418
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.53 E-value=0.37 Score=26.79 Aligned_cols=128 Identities=22% Similarity=0.305 Sum_probs=66.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCC-CCCCEECCCC---HHHHH------CCCEEEEEEE----------EE-EEC
Q ss_conf 99985468987788999999839614232-2000003885---77987------0960646799----------99-989
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQ-RVSERVMDCN---DLEKE------RGITILAKVT----------SI-VWN 80 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~-~v~~~vmD~~---~~Ere------RGITI~a~~~----------~~-~~~ 80 (624)
|-++|--++||||-+-.|-++-. +.+ ++-=-..|.. ..|+= =||.+++... ++ ..+
T Consensus 100 im~vGlqGsGKTTT~aKLA~~~k---k~g~kv~lvaaDt~RpaA~eQL~~la~~~~v~~~~~~~~~dp~~i~~~a~~~~k 176 (433)
T PRK00771 100 ILLVGLQGSGKTTTAAKLARYFQ---KKGLKVGVICADTWRPGAYEQLKQLCEKINVPFYGDPKEKDAVKIVKEGLEKLK 176 (433)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH---HCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 99973788978999999999999---779946785067883689999999998638873178899999999999999845
Q ss_pred CEEEEEECCCCC--CC--CHHHHHHHHHHH--CEEEEEEECCCCCCHHHHHHHHHHHHCCCCE-EEEEECCCCCCCCHHH
Q ss_conf 979999728987--54--079999998742--1789999768788647899999999729978-9999754366740256
Q gi|254780233|r 81 DVRINIVDTPGH--AD--FGGEVERILCMV--ESVVVLVDAAEGPMPQTKFVVGKALKIGLRP-IVVVNKVDRSDARADE 153 (624)
Q Consensus 81 ~~~iNiiDTPGH--~D--F~gEVer~l~~~--DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~-IvvINKiDr~~a~~~~ 153 (624)
++-+-||||-|- .| --.|...+-+++ |-.+||+||.-| |--....++....++. =++++|+|.+ |+---
T Consensus 177 ~~DvviiDTAGRl~~d~~Lm~El~~i~~~~~P~e~llV~Da~~G---Q~a~~~a~~F~~~~~i~gvIlTKlDgd-arGGa 252 (433)
T PRK00771 177 KVDVIIVDTAGRHKLEKDLIEEMKQIKEITKPDEVILVIDATIG---QQASEQAKAFKEAVGIGGIIITKLDGT-AKGGG 252 (433)
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCC---HHHHHHHHHHHHHCCCCEEEEECCCCC-CCCCH
T ss_conf 69889997765210409999999999877579768998654422---678999999987538873799725678-87305
Q ss_pred HHH
Q ss_conf 899
Q gi|254780233|r 154 VIN 156 (624)
Q Consensus 154 v~~ 156 (624)
+++
T Consensus 253 aLS 255 (433)
T PRK00771 253 ALS 255 (433)
T ss_pred HHH
T ss_conf 421
No 419
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=94.45 E-value=0.39 Score=26.66 Aligned_cols=52 Identities=13% Similarity=0.222 Sum_probs=30.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCC-CCCCCC--C-EECCCCHHHHHCCCEEEEEEE
Q ss_conf 499985468987788999999839614-232200--0-003885779870960646799
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFR-DNQRVS--E-RVMDCNDLEKERGITILAKVT 75 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~-~~~~v~--~-~vmD~~~~EreRGITI~a~~~ 75 (624)
.+||+|..++|||||+.-|+ |... ..|.+. . -+.+.......+.|+..+++.
T Consensus 42 ~vaIvG~sGsGKSTL~~ll~---gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~ 97 (226)
T cd03248 42 VTALVGPSGSGKSTVVALLE---NFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEP 97 (226)
T ss_pred EEEEECCCCCHHHHHHHHHH---CCCCCCCCEEEECCEEHHHCCHHHHHHCEEEEECCC
T ss_conf 99999999984999999996---454678878999999934489999973269992479
No 420
>KOG0096 consensus
Probab=94.35 E-value=0.16 Score=29.18 Aligned_cols=114 Identities=19% Similarity=0.262 Sum_probs=67.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEE--ECCEEEEEECCCCCCCCH
Q ss_conf 314999854689877889999998396142322000003885779870960646799999--899799997289875407
Q gi|254780233|r 19 IRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIV--WNDVRINIVDTPGHADFG 96 (624)
Q Consensus 19 IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~--~~~~~iNiiDTPGH~DF~ 96 (624)
++-+.++|-++-||||.+.+.| +|.|.......- |..+. .+.+. .+..++|.-||-|-.-|+
T Consensus 10 ~fklvlvGdgg~gKtt~vkr~l--tgeFe~~y~at~------------Gv~~~--pl~f~tn~g~irf~~wdtagqEk~g 73 (216)
T KOG0096 10 TFKLVLVGDGGTGKTTFVKRHL--TGEFEKTYPATL------------GVEVH--PLLFDTNRGQIRFNVWDTAGQEKKG 73 (216)
T ss_pred EEEEEEECCCCCCCCCHHHHHH--CCCCEECCCCCC------------EEEEE--EEEEECCCCCEEEEEEECCCCEEEC
T ss_conf 2899983478644453134353--032102136751------------03776--5455045684788863044421232
Q ss_pred HHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHH---HCCCCEEEEEECCCCCC
Q ss_conf 99999987421789999768788647899999999---72997899997543667
Q gi|254780233|r 97 GEVERILCMVESVVVLVDAAEGPMPQTKFVVGKAL---KIGLRPIVVVNKVDRSD 148 (624)
Q Consensus 97 gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~---~~~l~~IvvINKiDr~~ 148 (624)
|--.---=-..+|++..|...-..-+----|.+-+ ..++|++++=||.|-++
T Consensus 74 glrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~ 128 (216)
T KOG0096 74 GLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKA 128 (216)
T ss_pred CCCCCCEEECCEEEEEEEEEHHHHHHCCHHHHHHHHHHHCCCCEEEECCCEECCC
T ss_conf 3244527702146888610014556222178999999862787045445012155
No 421
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=94.35 E-value=0.089 Score=30.86 Aligned_cols=14 Identities=21% Similarity=0.560 Sum_probs=6.3
Q ss_pred CCCEEECCEEEEEE
Q ss_conf 99854378286764
Q gi|254780233|r 528 PGDKVYQGMIVGIH 541 (624)
Q Consensus 528 pg~~vy~Gmivge~ 541 (624)
.|..+|+|-|...+
T Consensus 451 d~~vi~~G~i~sLk 464 (509)
T COG0532 451 DGVVIYEGEVESLK 464 (509)
T ss_pred CCEEEEEEEEEEEE
T ss_conf 89089844886412
No 422
>KOG1490 consensus
Probab=94.34 E-value=0.11 Score=30.26 Aligned_cols=112 Identities=24% Similarity=0.303 Sum_probs=66.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEE-EEEEEECCEEEEEECCCCCCCCH
Q ss_conf 43149998546898778899999983961423220000038857798709606467-99999899799997289875407
Q gi|254780233|r 18 QIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAK-VTSIVWNDVRINIVDTPGHADFG 96 (624)
Q Consensus 18 ~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~-~~~~~~~~~~iNiiDTPGH~DF~ 96 (624)
+-|...|.|--.-||++++-.+ + .+.++ +..+- .|-.+- .-++.|+=-++-+|||||--|=-
T Consensus 167 ~trTlllcG~PNVGKSSf~~~v------t--radve--vqpYa-------FTTksL~vGH~dykYlrwQViDTPGILD~p 229 (620)
T KOG1490 167 NTRTLLVCGYPNVGKSSFNNKV------T--RADDE--VQPYA-------FTTKLLLVGHLDYKYLRWQVIDTPGILDRP 229 (620)
T ss_pred CCCEEEEECCCCCCCHHHCCCC------C--CCCCC--CCCCC-------CCCCHHHHHHHHHHEEEEEECCCCCCCCCC
T ss_conf 8671798527887737643552------0--15555--57766-------551012100203240234403884124760
Q ss_pred HHHHHHHHHH---------CEEEEEEECCC----CCCHHHH-HHHHHHHHCCCCEEEEEECCCC
Q ss_conf 9999998742---------17899997687----8864789-9999999729978999975436
Q gi|254780233|r 97 GEVERILCMV---------ESVVVLVDAAE----GPMPQTK-FVVGKALKIGLRPIVVVNKVDR 146 (624)
Q Consensus 97 gEVer~l~~~---------DgaiLvVdA~e----Gv~~QT~-~vl~~A~~~~l~~IvvINKiDr 146 (624)
-|--..+-|. -++|.+.|-++ .|..|-. |+--+-+=.+.+.|+++||+|.
T Consensus 230 lEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~ 293 (620)
T KOG1490 230 EEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDA 293 (620)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHEEEEECHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 5432179999999998756564113432212088899999999876788628846999520025
No 423
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=94.22 E-value=0.28 Score=27.58 Aligned_cols=21 Identities=19% Similarity=0.148 Sum_probs=12.4
Q ss_pred ECCCCCCCCCEEEEECCCCCC
Q ss_conf 607805159889996057850
Q gi|254780233|r 240 IHSGTIKSNQNIKALSPDGAL 260 (624)
Q Consensus 240 V~sGtlk~Gd~V~vl~~~g~~ 260 (624)
=.|=++++|+.|.++.++|..
T Consensus 483 ~vsl~i~~Ge~vaIvG~sGsG 503 (694)
T TIGR03375 483 NVSLTIRPGEKVAIIGRIGSG 503 (694)
T ss_pred CHHHEECCCCEEEEEECCCCC
T ss_conf 631188799789998058987
No 424
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=94.07 E-value=0.23 Score=28.19 Aligned_cols=24 Identities=13% Similarity=0.043 Sum_probs=16.2
Q ss_pred EEECCCCCCCCCEEEEECCCCCCE
Q ss_conf 996078051598899960578501
Q gi|254780233|r 238 GRIHSGTIKSNQNIKALSPDGALV 261 (624)
Q Consensus 238 gRV~sGtlk~Gd~V~vl~~~g~~~ 261 (624)
.+=.|=++++|+.+.++.++|..+
T Consensus 358 L~~isl~I~~G~~vaiVG~SGsGK 381 (581)
T PRK11176 358 LRNINFKIPAGKTVALVGRSGSGK 381 (581)
T ss_pred CCCCCCCCCCCCEEECCCCCCCCH
T ss_conf 106633579994431228999867
No 425
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=94.01 E-value=0.15 Score=29.40 Aligned_cols=47 Identities=19% Similarity=0.339 Sum_probs=36.3
Q ss_pred CCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCEEECCCCCEEEECCCC
Q ss_conf 3677734999996078051598899960578501211455301103665
Q gi|254780233|r 228 KDPFLGRIVTGRIHSGTIKSNQNIKALSPDGALVEVGRVSKILAFRGID 276 (624)
Q Consensus 228 ~d~y~Gria~gRV~sGtlk~Gd~V~vl~~~g~~~~~~kV~~L~~~~G~~ 276 (624)
..+..|...=.=+++|+|+.||++.++..+|... .||..|+.+..++
T Consensus 10 ~e~GlG~TiDvIL~dG~L~~gD~Ivv~g~~gpiv--TkIRaLl~P~pl~ 56 (110)
T cd03703 10 EEEGLGTTIDVILYDGTLREGDTIVVCGLNGPIV--TKVRALLKPQPLK 56 (110)
T ss_pred EECCCCEEEEEEEECCEECCCCEEEEECCCCCEE--EEEEEECCCCCHH
T ss_conf 6048956899999988884899999946999899--8886540478615
No 426
>TIGR01425 SRP54_euk signal recognition particle protein SRP54; InterPro: IPR006325 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. This entry represents the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.; GO: 0005525 GTP binding, 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle.
Probab=93.82 E-value=0.2 Score=28.59 Aligned_cols=125 Identities=22% Similarity=0.340 Sum_probs=66.2
Q ss_pred CCCCCCCCE--EEEECCCCCCHHHHHHHHHHH-----------------CCCCCCCCCCC--C------EECCCCHHHHH
Q ss_conf 468024314--999854689877889999998-----------------39614232200--0------00388577987
Q gi|254780233|r 13 RLGYMQIRN--IAIIAHVDHGKTTLVDELLKQ-----------------SGVFRDNQRVS--E------RVMDCNDLEKE 65 (624)
Q Consensus 13 ~~~~~~IRN--iaIiaHvDhGKTTL~d~LL~~-----------------sG~~~~~~~v~--~------~vmD~~~~Ere 65 (624)
++.|.|=.. |=.||=-++||||-+-.|-|+ +|+|.....=. . .++-++|.-
T Consensus 113 k~~p~Kgk~~ViMfVGLQGaGKTTtctKLA~YYk~rGfK~~lvCADTFRAGAFdQLkqNA~kA~iPFYGsy~E~DPVk-- 190 (453)
T TIGR01425 113 KFTPKKGKSSVIMFVGLQGAGKTTTCTKLAYYYKRRGFKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYLESDPVK-- 190 (453)
T ss_pred EEECCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEE--
T ss_conf 341156882158886214887156687877776326643256517754232489998747644897120104898707--
Q ss_pred CCCEEEE-EEEEEEECCEEEEEECCCCCC-C---CHHHHHHHHHHH--CEEEEEEECCCCCCHHHHHHHHHHHHCCCC-E
Q ss_conf 0960646-799999899799997289875-4---079999998742--178999976878864789999999972997-8
Q gi|254780233|r 66 RGITILA-KVTSIVWNDVRINIVDTPGHA-D---FGGEVERILCMV--ESVVVLVDAAEGPMPQTKFVVGKALKIGLR-P 137 (624)
Q Consensus 66 RGITI~a-~~~~~~~~~~~iNiiDTPGH~-D---F~gEVer~l~~~--DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~-~ 137 (624)
|-+ ..-.|.-.+.-|-||||-|=. - .--|...+-+++ |.+|.|-|++=| |--|-=.+|.....- -
T Consensus 191 ----iA~EGv~~Fk~E~~diIivDTSGRHkQe~~LF~Em~qv~~Ai~Pd~iifVMDGsIG---QAA~~QAkAFK~~~~vG 263 (453)
T TIGR01425 191 ----IASEGVEKFKKEKFDIIIVDTSGRHKQEEELFEEMVQVAEAIKPDSIIFVMDGSIG---QAAFSQAKAFKDSVEVG 263 (453)
T ss_pred ----EECCCHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCHH---HHHHHHHHHHHHCCCCE
T ss_conf ----80020113221278479983798732258888998768633499836998066166---78899999863003500
Q ss_pred EEEEECCCC
Q ss_conf 999975436
Q gi|254780233|r 138 IVVVNKVDR 146 (624)
Q Consensus 138 IvvINKiDr 146 (624)
=|.|+|||-
T Consensus 264 SvIiTKLDG 272 (453)
T TIGR01425 264 SVIITKLDG 272 (453)
T ss_pred EEEEECCCC
T ss_conf 388751567
No 427
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=93.80 E-value=0.45 Score=26.24 Aligned_cols=81 Identities=17% Similarity=0.259 Sum_probs=44.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCC-CCCCCCCEECCCCHHHHHCCCEE--EEEEEEEEEC-------------CEEE
Q ss_conf 499985468987788999999839614-23220000038857798709606--4679999989-------------9799
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFR-DNQRVSERVMDCNDLEKERGITI--LAKVTSIVWN-------------DVRI 84 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~-~~~~v~~~vmD~~~~EreRGITI--~a~~~~~~~~-------------~~~i 84 (624)
=++|||--++|||||+..+| |.+. ..|++. +.......+.++..| ..+..++.|. -.+.
T Consensus 32 ~~~iiGPNGaGKSTLlK~iL---Gll~p~~G~i~--~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~ 106 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAIL---GLLKPSSGEIK--IFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKK 106 (254)
T ss_pred EEEEECCCCCCHHHHHHHHH---CCCCCCCCEEE--ECCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHCCCCCCC
T ss_conf 89999998888899999996---78767742699--83666333466776997576102676799679999860675446
Q ss_pred EEECCCCCCCCHHHHHHHHHHHC
Q ss_conf 99728987540799999987421
Q gi|254780233|r 85 NIVDTPGHADFGGEVERILCMVE 107 (624)
Q Consensus 85 NiiDTPGH~DF~gEVer~l~~~D 107 (624)
+++..|+-.| --+|+++|..+.
T Consensus 107 g~~~~~~~~d-~~~v~~aL~~Vg 128 (254)
T COG1121 107 GWFRRLNKKD-KEKVDEALERVG 128 (254)
T ss_pred CCCCCCCHHH-HHHHHHHHHHCC
T ss_conf 6013666777-999999999839
No 428
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=93.78 E-value=0.33 Score=27.11 Aligned_cols=76 Identities=21% Similarity=0.201 Sum_probs=48.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHH-H
Q ss_conf 999854689877889999998396142322000003885779870960646799999899799997289875407999-9
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEV-E 100 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEV-e 100 (624)
+++.+.-+.||||++-.|-+.... +|..+. -+. .+-++|+||..+....- .
T Consensus 2 i~~~~~kGvGKTT~a~~La~~la~--------------------~g~~Vl----~vD----d~iiiD~~~~~~~~~~~~~ 53 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK--------------------RGKRVL----LID----DYVLIDTPPGLGLLVLLCL 53 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH--------------------CCCEEE----EEC----CCEEECCCCCCCHHHHHHH
T ss_conf 898589977689999999999998--------------------899699----986----7178858998884689999
Q ss_pred HHHHHHCEEEEEEECCCCCCHHHHH
Q ss_conf 9987421789999768788647899
Q gi|254780233|r 101 RILCMVESVVVLVDAAEGPMPQTKF 125 (624)
Q Consensus 101 r~l~~~DgaiLvVdA~eGv~~QT~~ 125 (624)
.++.++|.+++++........++..
T Consensus 54 ~~~~~~~~~i~~~~~~~~~~~~~~~ 78 (99)
T cd01983 54 LALLAADLVIIVTTPEALAVLGARR 78 (99)
T ss_pred HHHHHCCEEEEECCCCHHHHHHHHH
T ss_conf 8787589589965984889999999
No 429
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=93.66 E-value=0.14 Score=29.54 Aligned_cols=29 Identities=17% Similarity=0.448 Sum_probs=23.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 49998546898778899999983961423220
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRV 52 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v 52 (624)
-+||+|+-++|||||...| +|.....|.+
T Consensus 25 ~v~iiGpNGaGKSTLlk~i---~Gl~p~~G~I 53 (245)
T PRK03695 25 ILHLVGPNGAGKSTLLARM---AGLLSGSGEI 53 (245)
T ss_pred EEEEECCCCCHHHHHHHHH---HCCCCCCCEE
T ss_conf 9999978994199999998---4668889659
No 430
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=93.38 E-value=0.12 Score=30.14 Aligned_cols=29 Identities=34% Similarity=0.485 Sum_probs=21.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCC-CCCCC
Q ss_conf 499985468987788999999839614-23220
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFR-DNQRV 52 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~-~~~~v 52 (624)
-+||+|.-++|||||...| +|... ..|++
T Consensus 30 i~~liGpNGaGKSTLlk~i---~Gl~~p~~G~I 59 (257)
T PRK13548 30 VVAILGPNGAGKSTLLRAL---SGELPPSSGEV 59 (257)
T ss_pred EEEEECCCCCCHHHHHHHH---HCCCCCCCCEE
T ss_conf 9999999998799999998---56757787569
No 431
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=93.37 E-value=0.37 Score=26.80 Aligned_cols=47 Identities=26% Similarity=0.335 Sum_probs=29.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCC---CCCCCCC---CEECCCCHHHHHC-CCEE
Q ss_conf 49998546898778899999983961---4232200---0003885779870-9606
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVF---RDNQRVS---ERVMDCNDLEKER-GITI 70 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~---~~~~~v~---~~vmD~~~~EreR-GITI 70 (624)
-+||+|.-++|||||...| +|.. ...|++- ..+.+..+.||.| ||+.
T Consensus 28 i~~iiGpnGaGKSTLl~~i---~G~~~~~~~~G~I~~~g~~i~~~~~~~~~~~gi~~ 81 (200)
T cd03217 28 VHALMGPNGSGKSTLAKTI---MGHPKYEVTEGEILFKGEDITDLPPEERARLGIFL 81 (200)
T ss_pred EEEEECCCCCCHHHHHHHH---CCCCCCCCCCCEEEECCEECCCCCHHHHHHCCEEE
T ss_conf 9999968999999999997---07777785200799999998869999999769489
No 432
>KOG3886 consensus
Probab=93.24 E-value=0.42 Score=26.46 Aligned_cols=119 Identities=18% Similarity=0.285 Sum_probs=73.8
Q ss_pred CEEEEECCCCCCHHHHHHHHH--HHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECC-EEEEEECCCCCCCCH
Q ss_conf 149998546898778899999--98396142322000003885779870960646799999899-799997289875407
Q gi|254780233|r 20 RNIAIIAHVDHGKTTLVDELL--KQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWND-VRINIVDTPGHADFG 96 (624)
Q Consensus 20 RNiaIiaHvDhGKTTL~d~LL--~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~-~~iNiiDTPGH~DF~ 96 (624)
|-|-++|-.++|||+|-.... |.+--.++ -|-||--...++.|-| -.+|+-|+-|..-|.
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~r-----------------lg~tidveHsh~RflGnl~LnlwDcggqe~fm 67 (295)
T KOG3886 5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRR-----------------LGATIDVEHSHVRFLGNLVLNLWDCGGQEEFM 67 (295)
T ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHHHC-----------------CCCCCEEEEHHHHHHHHHEEEHHCCCCCHHHH
T ss_conf 2388850478874345205666565665516-----------------68861166435444200100021367809999
Q ss_pred HHH-----HHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHC---C---CCEEEEEECCCCCCCCHHHHH
Q ss_conf 999-----9998742178999976878864789999999972---9---978999975436674025689
Q gi|254780233|r 97 GEV-----ERILCMVESVVVLVDAAEGPMPQTKFVVGKALKI---G---LRPIVVVNKVDRSDARADEVI 155 (624)
Q Consensus 97 gEV-----er~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~---~---l~~IvvINKiDr~~a~~~~v~ 155 (624)
--- ..+.+.++..+-|-||..--+.---...++|++. + .++..++.|||.-..+-.+.+
T Consensus 68 en~~~~q~d~iF~nv~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~i 137 (295)
T KOG3886 68 ENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELI 137 (295)
T ss_pred HHHHHHCCHHHHEEHEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECHHCCCCHHHHH
T ss_conf 9887632001010021146654212136666489999999999853974237778740300025607899
No 433
>KOG4252 consensus
Probab=93.06 E-value=0.12 Score=30.13 Aligned_cols=129 Identities=19% Similarity=0.285 Sum_probs=78.7
Q ss_pred CCCEEEEECCCCCCCCC---EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEEC
Q ss_conf 34046531346802431---499985468987788999999839614232200000388577987096064679999989
Q gi|254780233|r 4 DDGLFFIYGRLGYMQIR---NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWN 80 (624)
Q Consensus 4 ~~~~~~~~~~~~~~~IR---NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~ 80 (624)
|..+||-+..|.+..+- -+.|+|...-||+|+.-+.. -|.|.+.-.-. .-.+-+|| .|-| .-.
T Consensus 2 ~~~~~~~~~am~e~d~e~aiK~vivGng~VGKssmiqryC--kgifTkdykkt---Igvdfler--qi~v-------~~E 67 (246)
T KOG4252 2 DELMFFRGMAMDETDYERAIKFVIVGNGSVGKSSMIQRYC--KGIFTKDYKKT---IGVDFLER--QIKV-------LIE 67 (246)
T ss_pred CHHHHHCCCCCCCHHHHHHEEEEEECCCCCCHHHHHHHHH--CCCCCCCCCCC---CCHHHHHH--HHHH-------HHH
T ss_conf 1466652678880324553789998788624689999985--24455665400---03235267--7774-------089
Q ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHCEEEEEEECCCCCC-HHHHHHHHH---HHHCCCCEEEEEECCCCC
Q ss_conf 9799997289875407999999874217899997687886-478999999---997299789999754366
Q gi|254780233|r 81 DVRINIVDTPGHADFGGEVERILCMVESVVVLVDAAEGPM-PQTKFVVGK---ALKIGLRPIVVVNKVDRS 147 (624)
Q Consensus 81 ~~~iNiiDTPGH~DF~gEVer~l~~~DgaiLvVdA~eGv~-~QT~~vl~~---A~~~~l~~IvvINKiDr~ 147 (624)
+.++-+.||-|...|-.=...--+-+...+||.+-++--- --|. -|+. +.-..+|.+++-||||.-
T Consensus 68 dvr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~-~w~~kv~~e~~~IPtV~vqNKIDlv 137 (246)
T KOG4252 68 DVRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATL-EWYNKVQKETERIPTVFVQNKIDLV 137 (246)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHH-HHHHHHHHHHCCCCEEEEECCCHHH
T ss_conf 999999872231667789998742564048998545177789999-9999999875568758764220056
No 434
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.98 E-value=0.089 Score=30.86 Aligned_cols=24 Identities=33% Similarity=0.548 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 499985468987788999999839614
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFR 47 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~ 47 (624)
-+|||||-++|||||+..| +|.+.
T Consensus 54 ~vaIIG~nGsGKSTL~~~l---~Gll~ 77 (320)
T PRK13631 54 IYFIIGNSGSGKSTLVTHF---NGLIK 77 (320)
T ss_pred EEEEECCCCCCHHHHHHHH---HCCCC
T ss_conf 9999949998499999999---75888
No 435
>KOG2485 consensus
Probab=92.97 E-value=0.2 Score=28.53 Aligned_cols=68 Identities=22% Similarity=0.276 Sum_probs=38.6
Q ss_pred CCEEEEEECCCCCCCCHH-HHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCC
Q ss_conf 997999972898754079-9999987421789999768788647899999999729978999975436674
Q gi|254780233|r 80 NDVRINIVDTPGHADFGG-EVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVNKVDRSDA 149 (624)
Q Consensus 80 ~~~~iNiiDTPGH~DF~g-EVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~IvvINKiDr~~a 149 (624)
-.+.-++=+-|||--=+- ..+.-+..+|..|=|=||.- |...--.+++.-+. -.++|+|.||||..++
T Consensus 20 ~~~~~~~~wfpgHmakalr~i~~~l~~~D~iiEvrDaRi-PLssrn~~~~~~~~-~k~riiVlNK~DLad~ 88 (335)
T KOG2485 20 AKYNMPRRWFPGHMAKALRAIQNRLPLVDCIIEVRDARI-PLSSRNELFQDFLP-PKPRIIVLNKMDLADP 88 (335)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCC-CCCCCCHHHHHHCC-CCCEEEEEECCCCCCC
T ss_conf 112886565764789999999865565537999611346-77655488897337-7754999840103683
No 436
>KOG0097 consensus
Probab=92.94 E-value=0.71 Score=24.95 Aligned_cols=144 Identities=22% Similarity=0.329 Sum_probs=78.3
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEC-CC-CHHHHHCCCEEEEEEEEEEECCEEEEEECCCC
Q ss_conf 68024314999854689877889999998396142322000003-88-57798709606467999998997999972898
Q gi|254780233|r 14 LGYMQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVM-DC-NDLEKERGITILAKVTSIVWNDVRINIVDTPG 91 (624)
Q Consensus 14 ~~~~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vm-D~-~~~EreRGITI~a~~~~~~~~~~~iNiiDTPG 91 (624)
...+-|=..-|||..+-||+-|.-+.-.. .+| |. +.+--|-|--| ..+.-...|+.|.||.|
T Consensus 6 ynysyifkyiiigdmgvgkscllhqftek------------kfmadcphtigvefgtri----ievsgqkiklqiwdtag 69 (215)
T KOG0097 6 YNYSYIFKYIIIGDMGVGKSCLLHQFTEK------------KFMADCPHTIGVEFGTRI----IEVSGQKIKLQIWDTAG 69 (215)
T ss_pred CCHHHEEEEEEECCCCCCHHHHHHHHHHH------------HHHHCCCCCCCEECCEEE----EEEECCEEEEEEEECCC
T ss_conf 54212477888724655477888888776------------775059852403123069----99607489999731325
Q ss_pred CCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHH--HHHCCC--C---EEEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 75407999999874217899997687886478999999--997299--7---8999975436674025689999988862
Q gi|254780233|r 92 HADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGK--ALKIGL--R---PIVVVNKVDRSDARADEVINEVFDLFSA 164 (624)
Q Consensus 92 H~DF~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~--A~~~~l--~---~IvvINKiDr~~a~~~~v~~ei~dlf~~ 164 (624)
..-|..-...--+-+.|||+|-|-..- -|--++.- +...+| | +++.-||.|.+..| +-..+|... |.+
T Consensus 70 qerfravtrsyyrgaagalmvyditrr---stynhlsswl~dar~ltnpnt~i~lignkadle~qr-dv~yeeak~-fae 144 (215)
T KOG0097 70 QERFRAVTRSYYRGAAGALMVYDITRR---STYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQR-DVTYEEAKE-FAE 144 (215)
T ss_pred HHHHHHHHHHHHCCCCCEEEEEEEHHH---HHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHC-CCCHHHHHH-HHH
T ss_conf 798999889886066650689974113---346668888865341489971899965611144503-786899998-887
Q ss_pred CCCCHHHCCHHHHHHHHHCC
Q ss_conf 26730110426688788659
Q gi|254780233|r 165 LDATDAQLDFPILYGSGRFG 184 (624)
Q Consensus 165 l~a~de~ld~Pv~~~Sa~~G 184 (624)
+.-|- .+.+||+.|
T Consensus 145 ----engl~--fle~saktg 158 (215)
T KOG0097 145 ----ENGLM--FLEASAKTG 158 (215)
T ss_pred ----HCCEE--EEEECCCCC
T ss_conf ----55908--998123236
No 437
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.91 E-value=0.29 Score=27.49 Aligned_cols=82 Identities=20% Similarity=0.226 Sum_probs=42.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCC-CCCCCC--C-EECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCC
Q ss_conf 1499985468987788999999839614-232200--0-00388577987096064679999989979999728987540
Q gi|254780233|r 20 RNIAIIAHVDHGKTTLVDELLKQSGVFR-DNQRVS--E-RVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADF 95 (624)
Q Consensus 20 RNiaIiaHvDhGKTTL~d~LL~~sG~~~-~~~~v~--~-~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF 95 (624)
..+||+|..++|||||+..|+ |... ..|.+. . -+.+....+..+.|+...+...+.....+=||. .|..+.
T Consensus 30 e~vaivG~sGsGKSTLl~ll~---gl~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~--~~~~~~ 104 (229)
T cd03254 30 ETVAIVGPTGAGKTTLINLLM---RFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIR--LGRPNA 104 (229)
T ss_pred CEEEEECCCCCHHHHHHHHHH---CCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCCCEECCCCHHHHHH--CCCCCC
T ss_conf 999999999980999999996---686678738999999954189999963289990389875745999840--589999
Q ss_pred H-HHHHHHHHHH
Q ss_conf 7-9999998742
Q gi|254780233|r 96 G-GEVERILCMV 106 (624)
Q Consensus 96 ~-gEVer~l~~~ 106 (624)
. .++..++.++
T Consensus 105 ~~~~~~~~l~~~ 116 (229)
T cd03254 105 TDEEVIEAAKEA 116 (229)
T ss_pred CHHHHHHHHHHH
T ss_conf 999999999984
No 438
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.88 E-value=0.16 Score=29.25 Aligned_cols=38 Identities=29% Similarity=0.489 Sum_probs=26.2
Q ss_pred EEEEECCCCCCCCCE----------EEEECCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 465313468024314----------99985468987788999999839614
Q gi|254780233|r 7 LFFIYGRLGYMQIRN----------IAIIAHVDHGKTTLVDELLKQSGVFR 47 (624)
Q Consensus 7 ~~~~~~~~~~~~IRN----------iaIiaHvDhGKTTL~d~LL~~sG~~~ 47 (624)
.-|.|+.-...-++| +||+||-++|||||.-.| +|.+.
T Consensus 14 vsf~Y~~~~~~~L~~isl~i~~Ge~vaivG~nGsGKSTLlk~l---~Gll~ 61 (273)
T PRK13632 14 VSFSYTEEFPNALKNVSFTINEGEYVAILGHNGSGKSTISKIL---TGLLK 61 (273)
T ss_pred EEEECCCCCCCEEEEEEEEECCCCEEEEECCCCCHHHHHHHHH---HCCCC
T ss_conf 8998299985606642889849989999999998699999999---73877
No 439
>TIGR02142 modC_ABC molybdate ABC transporter, ATP-binding protein; InterPro: IPR011868 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulphate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulphate transporter rather than by a specific molybdate transporter.; GO: 0005524 ATP binding, 0015098 molybdate ion transmembrane transporter activity, 0015689 molybdate ion transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=92.80 E-value=0.078 Score=31.24 Aligned_cols=24 Identities=33% Similarity=0.535 Sum_probs=21.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 999854689877889999998396142
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRD 48 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~ 48 (624)
.||.||.++|||||+-.+ ||.++-
T Consensus 26 tAlFG~SGsGKTtli~~i---aGL~rp 49 (361)
T TIGR02142 26 TALFGRSGSGKTTLIRLI---AGLTRP 49 (361)
T ss_pred EEEECCCCCHHHHHHHHH---HHCCCC
T ss_conf 871258997078999998---731675
No 440
>TIGR02857 CydD ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; InterPro: IPR014216 The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain and a C-terminal ATP-binding domain. In Escherichia coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in the export of redox-active thiol compounds such as cysteine and glutathione , . The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this entry are all either found in the gammaproteobacterial context, or the CydABCD context. All members of this entry scoring above the trusted cut off at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature, based on this operon in Bacillus subtilis, assigns cydC to the third gene in the operon, where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologues in this family in accordance with the precedence of publication of the E. coli name, CydD..
Probab=92.79 E-value=0.091 Score=30.81 Aligned_cols=31 Identities=26% Similarity=0.304 Sum_probs=18.6
Q ss_pred CC-CCEE-EEEEECCCCCCCCCEEEEECCCCCC
Q ss_conf 77-7349-9999607805159889996057850
Q gi|254780233|r 230 PF-LGRI-VTGRIHSGTIKSNQNIKALSPDGAL 260 (624)
Q Consensus 230 ~y-~Gri-a~gRV~sGtlk~Gd~V~vl~~~g~~ 260 (624)
.| -|+- ...+=.|=++++|..+.++.++|..
T Consensus 358 ~y~~G~~~pa~~~~sf~~~pG~~vAl~G~SGaG 390 (570)
T TIGR02857 358 AYAPGRDEPALRPVSFTVEPGERVALVGPSGAG 390 (570)
T ss_pred ECCCCCHHHCCCCCCEEECCCCEEEEEECCCCC
T ss_conf 627888010378854166387048886279997
No 441
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=92.78 E-value=0.12 Score=30.03 Aligned_cols=21 Identities=19% Similarity=0.404 Sum_probs=15.5
Q ss_pred CCCCCCCHHHHHHHHCCCCCC
Q ss_conf 233486413555321024542
Q gi|254780233|r 192 GSRDQGMVPLLNLIVDHVPPP 212 (624)
Q Consensus 192 ~~~~~gl~~Lld~Ii~~iP~P 212 (624)
+....|=+.|+.+++.++|+-
T Consensus 167 G~TgSGKTTll~aL~~~ip~~ 187 (332)
T PRK13900 167 GGTSTGKTTFTNAALREIPAI 187 (332)
T ss_pred CCCCCCHHHHHHHHHHCCCCC
T ss_conf 888988999999998358953
No 442
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.77 E-value=0.75 Score=24.80 Aligned_cols=18 Identities=17% Similarity=0.405 Sum_probs=8.7
Q ss_pred EEEECCCCCCEEECCCCCE
Q ss_conf 9996057850121145530
Q gi|254780233|r 251 IKALSPDGALVEVGRVSKI 269 (624)
Q Consensus 251 V~vl~~~g~~~~~~kV~~L 269 (624)
|.++.|.|- .++-.+.+|
T Consensus 226 i~lVGPTGV-GKTTTiAKL 243 (432)
T PRK12724 226 VFFVGPTGS-GKTTSIAKL 243 (432)
T ss_pred EEEECCCCC-CHHHHHHHH
T ss_conf 999899998-889999999
No 443
>KOG3887 consensus
Probab=92.75 E-value=0.23 Score=28.16 Aligned_cols=140 Identities=20% Similarity=0.268 Sum_probs=80.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCE--EEEEECCCCCCC
Q ss_conf 243149998546898778899999983961423220000038857798709606467999998997--999972898754
Q gi|254780233|r 17 MQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDV--RINIVDTPGHAD 94 (624)
Q Consensus 17 ~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~--~iNiiDTPGH~D 94 (624)
++=| |-++||--+|||+.-.-. |....-- +++-+|---.||- =...+. .+-++|-||..|
T Consensus 26 ~kp~-ilLMG~rRsGKsSI~KVV------FhkMsPn-----eTlflESTski~~------d~is~sfinf~v~dfPGQ~~ 87 (347)
T KOG3887 26 MKPR-ILLMGLRRSGKSSIQKVV------FHKMSPN-----ETLFLESTSKITR------DHISNSFINFQVWDFPGQMD 87 (347)
T ss_pred CCCE-EEEEEECCCCCCHHHHEE------EECCCCC-----CEEEEECCCCCCH------HHHHHHHCCEEEEECCCCCC
T ss_conf 8865-899730104732003112------3326987-----4367642575337------66533203437751588656
Q ss_pred C---HHHHHHHHHHHCEEEEEEECCCCC-CHHHHHHHHHHHHC----CCCEEEEEECCCCC--CCCHH---HHHHHHHHH
Q ss_conf 0---799999987421789999768788-64789999999972----99789999754366--74025---689999988
Q gi|254780233|r 95 F---GGEVERILCMVESVVVLVDAAEGP-MPQTKFVVGKALKI----GLRPIVVVNKVDRS--DARAD---EVINEVFDL 161 (624)
Q Consensus 95 F---~gEVer~l~~~DgaiLvVdA~eGv-~~QT~~vl~~A~~~----~l~~IvvINKiDr~--~a~~~---~v~~ei~dl 161 (624)
| +.+-|++.+-+.+-+.|+||.+-- ++-|+-+..-+..+ ++..=|+|.|+|.- +++.+ .+.....|-
T Consensus 88 ~Fd~s~D~e~iF~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~ 167 (347)
T KOG3887 88 FFDPSFDYEMIFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDE 167 (347)
T ss_pred CCCCCCCHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHHHHEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 67876588998741474999993658899999999987653055179844999997346775454234677799886578
Q ss_pred HHHCCCCHHHCCH
Q ss_conf 8622673011042
Q gi|254780233|r 162 FSALDATDAQLDF 174 (624)
Q Consensus 162 f~~l~a~de~ld~ 174 (624)
+.+.+...-|+.|
T Consensus 168 l~d~gle~v~vsf 180 (347)
T KOG3887 168 LADAGLEKVQVSF 180 (347)
T ss_pred HHHHHHCCCEEEE
T ss_conf 8861103633899
No 444
>PRK08118 topology modulation protein; Reviewed
Probab=92.71 E-value=0.12 Score=29.94 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=22.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 14999854689877889999998396
Q gi|254780233|r 20 RNIAIIAHVDHGKTTLVDELLKQSGV 45 (624)
Q Consensus 20 RNiaIiaHvDhGKTTL~d~LL~~sG~ 45 (624)
+-|.|||..++|||||+.+|-...|.
T Consensus 2 ~rI~IiG~~GsGKSTlAr~L~~~~~i 27 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNI 27 (167)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 67999889998799999999998896
No 445
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.65 E-value=0.17 Score=29.01 Aligned_cols=49 Identities=22% Similarity=0.321 Sum_probs=34.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCC---CEECCCCHHHHHC-CCEE
Q ss_conf 99985468987788999999839614232200---0003885779870-9606
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVS---ERVMDCNDLEKER-GITI 70 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~---~~vmD~~~~EreR-GITI 70 (624)
-||+|--++|||||+-.|.=+.+---..|++- +-++|-.+.||.| ||++
T Consensus 33 haiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifL 85 (251)
T COG0396 33 HAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFL 85 (251)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCEEECCEEEECCCCCCCCCHHHHHHCCCEE
T ss_conf 99988998788999999728997467555699878542559986888618776
No 446
>TIGR01007 eps_fam capsular exopolysaccharide family; InterPro: IPR005702 This family describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis (EPS). At least 13 genes EpsA to EpsM in streptococcus species seem to direct the EPS proteins and share high homology. ; GO: 0030234 enzyme regulator activity, 0045227 capsule polysaccharide biosynthetic process.
Probab=92.60 E-value=0.79 Score=24.65 Aligned_cols=130 Identities=26% Similarity=0.267 Sum_probs=69.9
Q ss_pred CCCCCCCCEEEEEC-CCCCCHHHHHHHHHHHCCCCCCCCCC--------CCEECCC--CHHHHHCCCE-EEEEEEE----
Q ss_conf 46802431499985-46898778899999983961423220--------0000388--5779870960-6467999----
Q gi|254780233|r 13 RLGYMQIRNIAIIA-HVDHGKTTLVDELLKQSGVFRDNQRV--------SERVMDC--NDLEKERGIT-ILAKVTS---- 76 (624)
Q Consensus 13 ~~~~~~IRNiaIia-HvDhGKTTL~d~LL~~sG~~~~~~~v--------~~~vmD~--~~~EreRGIT-I~a~~~~---- 76 (624)
.+....+.-++|-. .-+.||||++-.+- =+|.+.|-- -..+|-. ...|+-.|.| +++.++.
T Consensus 13 S~a~~e~K~l~itS~~~~eGKsT~S~NiA---~~fAqaGyKTLlIDgD~R~sv~~~~Fk~~n~~~GLtn~L~g~~dl~~~ 89 (207)
T TIGR01007 13 SGAEQEIKVLLITSVKAGEGKSTTSANIA---VSFAQAGYKTLLIDGDMRNSVMSGTFKSQNKIKGLTNFLSGNTDLSDA 89 (207)
T ss_pred CCCCCCEEEEEEEECCCCCCCEEEEHHHH---HHHHHCCCEEEEEECCCCCCCEEEEECCCCCCCCCHHHHCCCCCHHHH
T ss_conf 03578705899841105888624107889---999856855888754658660367865888765633322145453334
Q ss_pred -----E-E------------------------------ECCEEEEEECCCCCCCCHHHHHHHHHHHCEEEEEEECCCCCC
Q ss_conf -----9-9------------------------------899799997289875407999999874217899997687886
Q gi|254780233|r 77 -----I-V------------------------------WNDVRINIVDTPGHADFGGEVERILCMVESVVVLVDAAEGPM 120 (624)
Q Consensus 77 -----~-~------------------------------~~~~~iNiiDTPGH~DF~gEVer~l~~~DgaiLvVdA~eGv~ 120 (624)
+ + -+-|-+-|||||==-=+.-.- =..+.||+.|||++|-+=
T Consensus 90 i~~T~isenL~vi~sG~vPPNPt~LL~s~~F~~l~e~~~~~fD~iiiDTPPig~V~DAa-i~a~~~d~~~LV~~A~~~-- 166 (207)
T TIGR01007 90 ICETNISENLDVITSGPVPPNPTELLQSSNFKTLIETLRKYFDYIIIDTPPIGTVIDAA-IIARAVDASILVTDAGKI-- 166 (207)
T ss_pred HHCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHH-HHHHHHCCEEEEEECCCC--
T ss_conf 20265467872751788787754788889999999998716888999518866678899-999872977988722532--
Q ss_pred HHHHHHHHHHHH----CCCCEE-EEEECCCCCCCC
Q ss_conf 478999999997----299789-999754366740
Q gi|254780233|r 121 PQTKFVVGKALK----IGLRPI-VVVNKVDRSDAR 150 (624)
Q Consensus 121 ~QT~~vl~~A~~----~~l~~I-vvINKiDr~~a~ 150 (624)
-|.-++||.+ .|-+.+ ||+||+|-....
T Consensus 167 --~k~~v~KAK~~LEq~G~~~LGvvLNK~d~s~~~ 199 (207)
T TIGR01007 167 --KKREVKKAKEQLEQAGSKFLGVVLNKVDISVDK 199 (207)
T ss_pred --CHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCC
T ss_conf --646789999999861784115888882576556
No 447
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=92.59 E-value=0.2 Score=28.57 Aligned_cols=44 Identities=30% Similarity=0.510 Sum_probs=32.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCC-HHHHHCCCEE
Q ss_conf 4314999854689877889999998396142322000003885-7798709606
Q gi|254780233|r 18 QIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCN-DLEKERGITI 70 (624)
Q Consensus 18 ~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~-~~EreRGITI 70 (624)
.-|||.+||.-++||||+.-.|-...|. .+.|.+ -+|+.-|.||
T Consensus 3 ~kknI~LiG~mGsGKstvgk~LA~~l~~---------~fiD~D~~Ie~~~g~si 47 (172)
T PRK05057 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM---------EFYDSDQEIEKRTGADI 47 (172)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHCC---------CEEECHHHHHHHHCCCH
T ss_conf 8882898899999889999999999699---------96878099999979899
No 448
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=92.56 E-value=0.8 Score=24.62 Aligned_cols=108 Identities=21% Similarity=0.317 Sum_probs=57.9
Q ss_pred CCCCCEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCC-CCCCCCEECCCCHHHHHCCCEEEEEEEEEEEC
Q ss_conf 31340465313468024314999854689877889999998396142-32200000388577987096064679999989
Q gi|254780233|r 2 FYDDGLFFIYGRLGYMQIRNIAIIAHVDHGKTTLVDELLKQSGVFRD-NQRVSERVMDCNDLEKERGITILAKVTSIVWN 80 (624)
Q Consensus 2 ~~~~~~~~~~~~~~~~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~-~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~ 80 (624)
.|++...|..-.+.-.+=.-++|+|.-++|||||...| +|.++. .|++ .|+
T Consensus 9 ~y~~~~vl~~is~~i~~ge~~~l~G~NGsGKTTl~~~l---~G~~~~~~G~i-------------------------~~~ 60 (144)
T cd03221 9 TYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLI---AGELEPDEGIV-------------------------TWG 60 (144)
T ss_pred EECCEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHH---HCCCCCCCEEE-------------------------EEC
T ss_conf 99999999634899879999999989998499999998---48988985099-------------------------999
Q ss_pred C-EEEEEECCCCCCCC-HHHHHHHH----HHHCEEEEEEE-CCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 9-79999728987540-79999998----74217899997-6878864789999999972997899997
Q gi|254780233|r 81 D-VRINIVDTPGHADF-GGEVERIL----CMVESVVVLVD-AAEGPMPQTKFVVGKALKIGLRPIVVVN 142 (624)
Q Consensus 81 ~-~~iNiiDTPGH~DF-~gEVer~l----~~~DgaiLvVd-A~eGv~~QT~~vl~~A~~~~l~~IvvIN 142 (624)
+ .++-.++ -+ +||-.|.. -+.+.-+|+.| .+.|.-+.++..+...+...-..++++.
T Consensus 61 ~~~~i~y~~-----QLSgGqkqr~~la~al~~~p~iliLDEPt~~LD~~~~~~i~~~l~~~~~tii~vs 124 (144)
T cd03221 61 STVKIGYFE-----QLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVS 124 (144)
T ss_pred CCCEEEEEH-----HCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 960899870-----0799999999999997259989999577555899999999999997099999996
No 449
>PRK00131 aroK shikimate kinase; Reviewed
Probab=92.54 E-value=0.23 Score=28.17 Aligned_cols=45 Identities=29% Similarity=0.448 Sum_probs=32.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCH-HHHHCCCEE
Q ss_conf 243149998546898778899999983961423220000038857-798709606
Q gi|254780233|r 17 MQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCND-LEKERGITI 70 (624)
Q Consensus 17 ~~IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~-~EreRGITI 70 (624)
.+=|||.+||.-++||||+...|-..-|. .+.|.+. .|+.-|.||
T Consensus 2 ~~~~nI~liG~~GsGKTtvgk~LA~~L~~---------~fiD~D~~Ie~~~g~si 47 (175)
T PRK00131 2 LKGPNIVLIGMMGAGKSTIGRLLAKRLGY---------EFIDTDHLIEARAGKSI 47 (175)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCC---------CCCCCCHHHHHHHCCCH
T ss_conf 99980898889999989999999999596---------90239889997616999
No 450
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=92.52 E-value=0.15 Score=29.35 Aligned_cols=48 Identities=19% Similarity=0.263 Sum_probs=29.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCC-CCCCCC--C-EECCCCHHHHHCCCEEE
Q ss_conf 499985468987788999999839614-232200--0-00388577987096064
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFR-DNQRVS--E-RVMDCNDLEKERGITIL 71 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~-~~~~v~--~-~vmD~~~~EreRGITI~ 71 (624)
-+||+|.-++|||||...| +|..+ ..|++. . -+......|..|.|...
T Consensus 30 i~~liGpNGaGKSTLlk~i---~Gl~~p~sG~I~i~g~~i~~~~~~~~~~~i~~v 81 (255)
T PRK11231 30 ITALIGPNGCGKSTLLKCF---ARLLTPQSGTVFLGDKPISMLSARQLARRLSLL 81 (255)
T ss_pred EEEEECCCCCHHHHHHHHH---HCCCCCCCCEEEECCEECCCCCHHHHHHHEEEE
T ss_conf 9999999998199999999---759888864899999983629989985118997
No 451
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=92.49 E-value=0.22 Score=28.28 Aligned_cols=23 Identities=39% Similarity=0.590 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 99985468987788999999839614
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFR 47 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~ 47 (624)
+||+|+-++|||||...| +|..+
T Consensus 29 ~~iiG~nGaGKSTLl~~i---~Gl~~ 51 (205)
T cd03226 29 IALTGKNGAGKTTLAKIL---AGLIK 51 (205)
T ss_pred EEEECCCCCCHHHHHHHH---HCCCC
T ss_conf 999889999899999999---56857
No 452
>TIGR02673 FtsE cell division ATP-binding protein FtsE; InterPro: IPR005286 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). FtsE is an ABC transporter ATP-binding protein. This protein and its permease partner FtsX, localize to the cell division site. In a number of species, the ftsEX gene pair is located next to ftsY, which encodes the signal recognition particle-docki ng protein.; GO: 0005524 ATP binding, 0051301 cell division.
Probab=92.46 E-value=0.088 Score=30.90 Aligned_cols=19 Identities=37% Similarity=0.487 Sum_probs=15.6
Q ss_pred EECCCCCCHHHHHHHHHHHC
Q ss_conf 98546898778899999983
Q gi|254780233|r 24 IIAHVDHGKTTLVDELLKQS 43 (624)
Q Consensus 24 IiaHvDhGKTTL~d~LL~~s 43 (624)
+.||.++|||||. .|||.+
T Consensus 33 LtG~SGAGKttLL-KLl~~~ 51 (215)
T TIGR02673 33 LTGPSGAGKTTLL-KLLYGA 51 (215)
T ss_pred EECCCCCCHHHHH-HHHHHH
T ss_conf 8727786178999-999852
No 453
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=92.42 E-value=0.16 Score=29.22 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 499985468987788999999839614
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFR 47 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~ 47 (624)
-++|+|+-++|||||...| +|.++
T Consensus 28 i~~llGpNGAGKSTll~~i---~Gl~~ 51 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMI---VGLVK 51 (232)
T ss_pred EEEEECCCCCCHHHHHHHH---HCCCC
T ss_conf 9999999996199999999---77999
No 454
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=92.24 E-value=0.2 Score=28.62 Aligned_cols=57 Identities=19% Similarity=0.311 Sum_probs=36.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCC-CCCCCC--C-EECCCCHHHHHCCCEEEEEEEEEEE
Q ss_conf 1499985468987788999999839614-232200--0-0038857798709606467999998
Q gi|254780233|r 20 RNIAIIAHVDHGKTTLVDELLKQSGVFR-DNQRVS--E-RVMDCNDLEKERGITILAKVTSIVW 79 (624)
Q Consensus 20 RNiaIiaHvDhGKTTL~d~LL~~sG~~~-~~~~v~--~-~vmD~~~~EreRGITI~a~~~~~~~ 79 (624)
..++|||.-++|||||...| +|.++ ..|++. . .+.+....|..|.|....+...+.|
T Consensus 29 Ei~gLIGPNGAGKSTLLk~I---~Gll~P~~G~V~l~G~~i~~~~~~elar~ia~vpQ~~~l~~ 89 (409)
T PRK09536 29 HLVGVVGPNGAGKTTLLRAM---NGLITPTAGTVLVAGDDVHALSAAAASRQVATVPQDTSLSF 89 (409)
T ss_pred CEEEEECCCCCHHHHHHHHH---HCCCCCCCEEEEECCEECCCCCHHHHHHHHEEECCCCCCCC
T ss_conf 89999999872799999999---66888896399999999887998999623348433346677
No 455
>TIGR00955 3a01204 Pigment precourser permease; InterPro: IPR005284 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes different parts of a membrane-spanning permease system necessary for the transport of pigment precursor into pigment cells responsible for eye color. White protein dimerises with brown protein for the transport of guanine and with scarlet protein for the transport of tryptophan.; GO: 0006810 transport.
Probab=92.22 E-value=0.11 Score=30.33 Aligned_cols=20 Identities=40% Similarity=0.541 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q ss_conf 99985468987788999999
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLK 41 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~ 41 (624)
+||+|-.++|||||.+.|-.
T Consensus 61 lA~mGsSGAGKTTLmn~La~ 80 (671)
T TIGR00955 61 LAIMGSSGAGKTTLMNALAF 80 (671)
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 89847876626899999853
No 456
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=92.18 E-value=0.89 Score=24.31 Aligned_cols=115 Identities=18% Similarity=0.241 Sum_probs=64.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCC-CCCCCC--C-EECCCCHHHHHCCCEEEEEEEEEE----------ECCE-EEE
Q ss_conf 499985468987788999999839614-232200--0-003885779870960646799999----------8997-999
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFR-DNQRVS--E-RVMDCNDLEKERGITILAKVTSIV----------WNDV-RIN 85 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~-~~~~v~--~-~vmD~~~~EreRGITI~a~~~~~~----------~~~~-~iN 85 (624)
-++|||.-++|||||..+| +|..+ ..|.+. . .+.+...-|..|-|....+..... +.-+ +.+
T Consensus 30 i~~iiGpNG~GKSTLLk~l---~~~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~ 106 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCL---AGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLG 106 (258)
T ss_pred EEEEECCCCCCHHHHHHHH---HCCCCCCCCEEEECCCCHHHCCHHHHHHHEEEECCCCCCCCCCEEEEHHHHCCCCCCC
T ss_conf 9999899888999999998---6567888877999997245469888756189935678899995873617426774655
Q ss_pred EECCCCCCCCHHHHHHHHHHHC---EEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 9728987540799999987421---789999768788647899999999729978999
Q gi|254780233|r 86 IVDTPGHADFGGEVERILCMVE---SVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVV 140 (624)
Q Consensus 86 iiDTPGH~DF~gEVer~l~~~D---gaiLvVdA~eGv~~QT~~vl~~A~~~~l~~Ivv 140 (624)
...+|+-.|-. .|+.+|..++ -|-=.++.-.|=|-|- ..+..|+.++-++++.
T Consensus 107 ~~~~~~~~D~~-~v~~aL~~~~~~~la~r~~~~LSGGerQr-v~iAraLaQ~~~iLLL 162 (258)
T COG1120 107 LFGRPSKEDEE-IVEEALELLGLEHLADRPVDELSGGERQR-VLIARALAQETPILLL 162 (258)
T ss_pred CCCCCCHHHHH-HHHHHHHHHCCHHHHCCCCCCCCHHHHHH-HHHHHHHHCCCCEEEE
T ss_conf 33578876899-99999998294777668551168668899-9999998458997882
No 457
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=92.17 E-value=0.17 Score=29.07 Aligned_cols=51 Identities=31% Similarity=0.361 Sum_probs=31.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCC-CCCCCC---CEECCCCHHHHHCCCEEEEE
Q ss_conf 1499985468987788999999839614-232200---00038857798709606467
Q gi|254780233|r 20 RNIAIIAHVDHGKTTLVDELLKQSGVFR-DNQRVS---ERVMDCNDLEKERGITILAK 73 (624)
Q Consensus 20 RNiaIiaHvDhGKTTL~d~LL~~sG~~~-~~~~v~---~~vmD~~~~EreRGITI~a~ 73 (624)
..+||||.-++|||||...| +|... ..|++. ..+......|..|.|.+..+
T Consensus 34 e~~~iiGpNGaGKSTLlk~i---~Gll~p~~G~I~l~g~~i~~~~~~~~~~~ig~v~Q 88 (265)
T PRK10253 34 HFTAIIGPNGCGKSTLLRTL---SRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQ 88 (265)
T ss_pred CEEEEECCCCCHHHHHHHHH---HCCCCCCCEEEEECCEECCCCCHHHHHHHEEEEEC
T ss_conf 79999999883999999999---74988885299999999574897898765557601
No 458
>PRK07261 topology modulation protein; Provisional
Probab=92.15 E-value=0.16 Score=29.18 Aligned_cols=24 Identities=38% Similarity=0.364 Sum_probs=20.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 999854689877889999998396
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGV 45 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~ 45 (624)
|.|||-.++|||||+.+|-...|.
T Consensus 3 I~IiG~sGsGKSTlAr~L~~~~~i 26 (171)
T PRK07261 3 IAIIGYSGSGKSTLARFLGQHYNC 26 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 999889998689999999998797
No 459
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.13 E-value=0.13 Score=29.86 Aligned_cols=24 Identities=42% Similarity=0.614 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 499985468987788999999839614
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFR 47 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~ 47 (624)
-+||+||-++|||||+..| +|.++
T Consensus 30 ~vaiiG~nGsGKSTL~~~l---~Gll~ 53 (274)
T PRK13644 30 YIGIIGKNGSGKSTLALHL---NGLLR 53 (274)
T ss_pred EEEEECCCCCHHHHHHHHH---HCCCC
T ss_conf 9999999998099999999---70685
No 460
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=92.12 E-value=0.9 Score=24.27 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=17.5
Q ss_pred EEEEE-CCCCCCHHHHHHHHHHHCC
Q ss_conf 49998-5468987788999999839
Q gi|254780233|r 21 NIAII-AHVDHGKTTLVDELLKQSG 44 (624)
Q Consensus 21 NiaIi-aHvDhGKTTL~d~LL~~sG 44 (624)
-|||+ |-.+-||||++=+|.+..+
T Consensus 3 ~vAV~sGKGGtGKTTva~~la~~l~ 27 (284)
T COG1149 3 QVAVASGKGGTGKTTVAANLAVLLG 27 (284)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 7999636887770228999999836
No 461
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=92.12 E-value=0.47 Score=26.12 Aligned_cols=24 Identities=25% Similarity=0.505 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 499985468987788999999839614
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFR 47 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~ 47 (624)
-++|+|..++|||||...| +|...
T Consensus 29 ~v~i~G~sGsGKSTLl~~l---~Gl~~ 52 (166)
T cd03223 29 RLLITGPSGTGKSSLFRAL---AGLWP 52 (166)
T ss_pred EEEEECCCCCCHHHHHHHH---CCCCC
T ss_conf 9999958999889999998---69876
No 462
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=92.00 E-value=0.93 Score=24.19 Aligned_cols=13 Identities=23% Similarity=0.493 Sum_probs=6.4
Q ss_pred CCCEEEEECCCCC
Q ss_conf 5988999605785
Q gi|254780233|r 247 SNQNIKALSPDGA 259 (624)
Q Consensus 247 ~Gd~V~vl~~~g~ 259 (624)
.+--+.+++|.|-
T Consensus 202 ~~~vi~LVGPTGV 214 (407)
T COG1419 202 QKRVIALVGPTGV 214 (407)
T ss_pred CCCEEEEECCCCC
T ss_conf 6857999899887
No 463
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.98 E-value=0.14 Score=29.67 Aligned_cols=24 Identities=25% Similarity=0.589 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 499985468987788999999839614
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFR 47 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~ 47 (624)
-+|||||-++|||||...| +|.+.
T Consensus 35 ~~aiiG~nGsGKSTLl~~l---~GLl~ 58 (286)
T PRK13646 35 YYAIVGQTGSGKSTLIQNI---NALLK 58 (286)
T ss_pred EEEEECCCCCHHHHHHHHH---HCCCC
T ss_conf 9999999998199999999---70788
No 464
>TIGR01978 sufC FeS assembly ATPase SufC; InterPro: IPR010230 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] . FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins , . It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly . The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA . SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA , acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins . Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen . This entry represents SufC, which acts as an ATPase in the SUF system. SufC belongs to the ATP-binding cassette transporter family (IPR003439 from INTERPRO) but is no longer thought to be part of a transporter. The complex is reported as cytosolic or associated with the membrane.; GO: 0005524 ATP binding, 0006810 transport.
Probab=91.93 E-value=0.14 Score=29.48 Aligned_cols=60 Identities=22% Similarity=0.409 Sum_probs=38.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCC---CCCCCCCC---CEECCCCHHHHHC-CCEEEEEEEEEEECCEEEEEECCCCC--
Q ss_conf 999854689877889999998396---14232200---0003885779870-96064679999989979999728987--
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGV---FRDNQRVS---ERVMDCNDLEKER-GITILAKVTSIVWNDVRINIVDTPGH-- 92 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~---~~~~~~v~---~~vmD~~~~EreR-GITI~a~~~~~~~~~~~iNiiDTPGH-- 92 (624)
.||+|==+||||||+..| +|- .=..|++. +=+++=.++||.| ||=+ ||+|. .+-||=
T Consensus 29 HAiMGPNGsGKSTL~~~i---aGhp~y~vt~G~I~f~G~Dll~l~~~ERAR~GlFL-----aFQ~P------~EIPGV~~ 94 (248)
T TIGR01978 29 HAIMGPNGSGKSTLSKTI---AGHPKYEVTSGTILFKGQDLLELEPDERARAGLFL-----AFQYP------EEIPGVSN 94 (248)
T ss_pred EEEECCCCCCHHHHHHHH---HCCCCEEEEEEEEEECCEECCCCCHHHHHCCCCEE-----CCCCC------CCCCCCCH
T ss_conf 998688998478887776---17993378420898776520018965564056510-----15888------55688577
Q ss_pred CCC
Q ss_conf 540
Q gi|254780233|r 93 ADF 95 (624)
Q Consensus 93 ~DF 95 (624)
.+|
T Consensus 95 ~~F 97 (248)
T TIGR01978 95 LEF 97 (248)
T ss_pred HHH
T ss_conf 889
No 465
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=91.92 E-value=0.19 Score=28.77 Aligned_cols=24 Identities=42% Similarity=0.499 Sum_probs=21.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 314999854689877889999998
Q gi|254780233|r 19 IRNIAIIAHVDHGKTTLVDELLKQ 42 (624)
Q Consensus 19 IRNiaIiaHvDhGKTTL~d~LL~~ 42 (624)
=+||.|.|..++|||||..+|+..
T Consensus 25 ~~nIlIsG~tGSGKTTll~al~~~ 48 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHH
T ss_conf 998999899999899999999961
No 466
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=91.91 E-value=0.15 Score=29.46 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 499985468987788999999
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLK 41 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~ 41 (624)
-+||+|..++|||||+..|+.
T Consensus 31 ~iaIvG~sGsGKSTLl~ll~g 51 (238)
T cd03249 31 TVALVGSSGCGKSTVVSLLER 51 (238)
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999989999999823
No 467
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=91.86 E-value=0.15 Score=29.30 Aligned_cols=23 Identities=39% Similarity=0.654 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 49998546898778899999983961
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVF 46 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~ 46 (624)
-+|||||-++|||||.-.| +|.+
T Consensus 35 ~v~IiG~nGsGKSTL~k~l---~Gll 57 (304)
T PRK13651 35 FIAIIGQTGSGKTTFIEHL---NALL 57 (304)
T ss_pred EEEEECCCCCCHHHHHHHH---HCCC
T ss_conf 9999879998599999999---6699
No 468
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=91.85 E-value=0.17 Score=28.97 Aligned_cols=29 Identities=17% Similarity=0.221 Sum_probs=22.5
Q ss_pred EEEECCCCCCHHHHHHHHHHH-CCCCCCCC
Q ss_conf 999854689877889999998-39614232
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQ-SGVFRDNQ 50 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~-sG~~~~~~ 50 (624)
++|+|.-|+|||||.|++.|. .|...+.+
T Consensus 28 ~lI~G~nGsGKSSIldAI~~ALyG~~~~~~ 57 (908)
T COG0419 28 FLIVGPNGAGKSSILDAITFALYGKTPRLG 57 (908)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCC
T ss_conf 799899999788999999999828987754
No 469
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.78 E-value=0.14 Score=29.60 Aligned_cols=23 Identities=39% Similarity=0.764 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 99985468987788999999839614
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFR 47 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~ 47 (624)
+|||||-++|||||.-.| +|.+.
T Consensus 35 vaiiG~nGsGKSTLl~~l---~Gll~ 57 (288)
T PRK13643 35 TALIGHTGSGKSTLLQHL---NGLLQ 57 (288)
T ss_pred EEEECCCCCHHHHHHHHH---HCCCC
T ss_conf 999999994799999999---74888
No 470
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=91.68 E-value=0.15 Score=29.47 Aligned_cols=46 Identities=26% Similarity=0.255 Sum_probs=31.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCC-EECCCCHHHHHC
Q ss_conf 4999854689877889999998396142322000-003885779870
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSE-RVMDCNDLEKER 66 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~-~vmD~~~~EreR 66 (624)
=|+|-|-++.|||||+.+|-.+-|+-.-.+.+++ .++|.--...+|
T Consensus 6 ~IvI~G~IG~GKSTLa~~La~~l~~~~~~E~vednp~L~~FY~d~~~ 52 (216)
T COG1428 6 VIVIEGMIGAGKSTLAQALAEHLGFKVFYELVEDNPFLDLFYEDPER 52 (216)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHH
T ss_conf 89984464468789999999883885022224678479999876997
No 471
>TIGR01184 ntrCD nitrate ABC transporter, ATP-binding proteins C and D; InterPro: IPR005890 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. ; GO: 0015112 nitrate transmembrane transporter activity, 0015706 nitrate transport, 0016020 membrane.
Probab=91.60 E-value=0.13 Score=29.69 Aligned_cols=21 Identities=43% Similarity=0.771 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 999854689877889999998396
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGV 45 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~ 45 (624)
|++|||.+.|||||..-+ ||.
T Consensus 14 isliGHSGCGKSTLLNli---~Gl 34 (230)
T TIGR01184 14 ISLIGHSGCGKSTLLNLI---SGL 34 (230)
T ss_pred EEEECCCCCCHHHHHHHH---HHC
T ss_conf 998512786178999998---500
No 472
>PRK03918 chromosome segregation protein; Provisional
Probab=91.53 E-value=0.82 Score=24.54 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=20.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHC-CCC
Q ss_conf 9998546898778899999983-961
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQS-GVF 46 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~s-G~~ 46 (624)
++|+|--++||||+.|+|.|.- |..
T Consensus 26 ~~I~G~nGsGKStIlDAI~~aL~g~~ 51 (882)
T PRK03918 26 NLIIGQNGSGKSSLLDAILVGLYWPL 51 (882)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 79889999988999999999981898
No 473
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=91.34 E-value=0.17 Score=28.99 Aligned_cols=20 Identities=35% Similarity=0.454 Sum_probs=16.4
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 49998546898778899999
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELL 40 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL 40 (624)
-+||+|+.++|||||+..|+
T Consensus 65 ~vaIVG~sGSGKSTLl~lL~ 84 (282)
T cd03291 65 MLAITGSTGSGKTSLLMLIL 84 (282)
T ss_pred EEEEECCCCCHHHHHHHHHH
T ss_conf 99999999981999999995
No 474
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=91.33 E-value=0.26 Score=27.77 Aligned_cols=27 Identities=33% Similarity=0.430 Sum_probs=23.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 149998546898778899999983961
Q gi|254780233|r 20 RNIAIIAHVDHGKTTLVDELLKQSGVF 46 (624)
Q Consensus 20 RNiaIiaHvDhGKTTL~d~LL~~sG~~ 46 (624)
.+|.|+|..++||||++..|-...|..
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~~i~ 27 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKLGLP 27 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 979998999998899999999976997
No 475
>PRK06547 hypothetical protein; Provisional
Probab=91.29 E-value=0.19 Score=28.67 Aligned_cols=27 Identities=30% Similarity=0.233 Sum_probs=22.9
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 024314999854689877889999998
Q gi|254780233|r 16 YMQIRNIAIIAHVDHGKTTLVDELLKQ 42 (624)
Q Consensus 16 ~~~IRNiaIiaHvDhGKTTL~d~LL~~ 42 (624)
--+.|-|||=|..++|||||+.+|-..
T Consensus 12 ~g~~~iVaIDG~sGaGKTTLA~~La~~ 38 (184)
T PRK06547 12 GGDMITVLIDGRSGSGKTTLAGELAAC 38 (184)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 997699998689988889999999974
No 476
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=91.27 E-value=0.22 Score=28.32 Aligned_cols=26 Identities=38% Similarity=0.474 Sum_probs=22.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 99985468987788999999839614
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFR 47 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~ 47 (624)
++|+|..++|||||+..+++..+..+
T Consensus 24 ~~iiG~nGsGKSTLl~~~~~~~~~~~ 49 (176)
T cd03238 24 VVVTGVSGSGKSTLVNEGLYASGKAR 49 (176)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCH
T ss_conf 99999999989999998887610311
No 477
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.15 E-value=0.66 Score=25.14 Aligned_cols=110 Identities=20% Similarity=0.228 Sum_probs=61.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEE-EEEEEEEECCEEEEEECCCCC------CC
Q ss_conf 99985468987788999999839614232200000388577987096064-679999989979999728987------54
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITIL-AKVTSIVWNDVRINIVDTPGH------AD 94 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~-a~~~~~~~~~~~iNiiDTPGH------~D 94 (624)
.-|||--++||||+. ..+|.--.... .++..|...- ..+|. -|-...--+|||-|- .|
T Consensus 128 y~viG~pgsGKTtal----~~sgl~Fpl~~----------~~~~~~~~~~gT~~cd-wwf~deaVlIDtaGry~~q~s~~ 192 (1188)
T COG3523 128 YMVIGPPGSGKTTAL----LNSGLQFPLAE----------QMGALGLAGPGTRNCD-WWFTDEAVLIDTAGRYITQDSAD 192 (1188)
T ss_pred EEEECCCCCCCCHHH----HCCCCCCCCHH----------HHCCCCCCCCCCCCCC-CCCCCCEEEECCCCCEECCCCCC
T ss_conf 588548889840087----51553666155----------5331222688873357-54255348985875244366750
Q ss_pred CHHHHH-----------HHHHHHCEEEEEEECCC--CCCHHHHH-----------HHHHHHHCCCCEEEEEECCCC
Q ss_conf 079999-----------99874217899997687--88647899-----------999999729978999975436
Q gi|254780233|r 95 FGGEVE-----------RILCMVESVVVLVDAAE--GPMPQTKF-----------VVGKALKIGLRPIVVVNKVDR 146 (624)
Q Consensus 95 F~gEVe-----------r~l~~~DgaiLvVdA~e--Gv~~QT~~-----------vl~~A~~~~l~~IvvINKiDr 146 (624)
+....+ |..+-.+|++|-+|..+ +..++-+. =++..+...+|+.+++||+|.
T Consensus 193 ~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dl 268 (1188)
T COG3523 193 EVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADL 268 (1188)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 2348889998889997355788863799978999738999999999999999999999841567763899862100
No 478
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=91.14 E-value=0.84 Score=24.47 Aligned_cols=67 Identities=15% Similarity=0.149 Sum_probs=36.0
Q ss_pred EECCEEEEEECCCCCC---CCHHHHHHHHHHHCEEEEEEECCCCCCHHH------HHHHHHHHHCCCCE-EEEEECCCCC
Q ss_conf 9899799997289875---407999999874217899997687886478------99999999729978-9999754366
Q gi|254780233|r 78 VWNDVRINIVDTPGHA---DFGGEVERILCMVESVVVLVDAAEGPMPQT------KFVVGKALKIGLRP-IVVVNKVDRS 147 (624)
Q Consensus 78 ~~~~~~iNiiDTPGH~---DF~gEVer~l~~~DgaiLvVdA~eGv~~QT------~~vl~~A~~~~l~~-IvvINKiDr~ 147 (624)
.|.++-+-|+|++|.. -|.--. ...++|.+++++...- ++=+ +.+-+.+...+++. =+++|+.|.+
T Consensus 113 ~~~~~D~IliD~lGdvv~~gf~~pi--~~~~Ad~vlIvtt~E~--~Al~~a~~l~k~I~~~~~~~n~~l~GiI~N~~~~~ 188 (212)
T cd02117 113 AEDDLDVVLYDVLGDVVCGGFAMPI--REGKADEIYIVTSGEF--MALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD 188 (212)
T ss_pred HCCCCCEEEEECCCCCEECCCCCCC--CCCCCCEEEEECCCCH--HHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCC
T ss_conf 0257999999658854035633432--1166888999806935--78898899999999997367981489998467888
Q ss_pred C
Q ss_conf 7
Q gi|254780233|r 148 D 148 (624)
Q Consensus 148 ~ 148 (624)
.
T Consensus 189 ~ 189 (212)
T cd02117 189 R 189 (212)
T ss_pred C
T ss_conf 6
No 479
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.10 E-value=0.17 Score=29.10 Aligned_cols=24 Identities=42% Similarity=0.797 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 499985468987788999999839614
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFR 47 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~ 47 (624)
-+|||||-++|||||.-.| +|.+.
T Consensus 22 ~vaiiG~sGsGKSTLl~~l---~GLl~ 45 (276)
T PRK13634 22 YVAIIGHTGSGKSTLLQHL---NGLLK 45 (276)
T ss_pred EEEEECCCCCHHHHHHHHH---HCCCC
T ss_conf 9999999996999999999---74999
No 480
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.09 E-value=0.19 Score=28.66 Aligned_cols=24 Identities=33% Similarity=0.576 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 499985468987788999999839614
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFR 47 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~ 47 (624)
-+||+|+-++|||||.-.| +|..+
T Consensus 33 ~~aiiG~NGsGKSTLl~~l---~Gl~~ 56 (273)
T PRK13647 33 KTAILGPNGAGKSTLLLHL---NGIYT 56 (273)
T ss_pred EEEEECCCCCHHHHHHHHH---HCCCC
T ss_conf 9999999997599999999---66988
No 481
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.08 E-value=0.19 Score=28.70 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 499985468987788999999839614
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFR 47 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~ 47 (624)
-+||+||-++|||||.-.| +|.++
T Consensus 30 ~vaiiG~nGsGKSTLl~~l---~Gll~ 53 (275)
T PRK13639 30 MIAILGPNGAGKSTLFLHF---NGILK 53 (275)
T ss_pred EEEEECCCCCHHHHHHHHH---HCCCC
T ss_conf 9999999996499999999---73989
No 482
>PRK11568 hypothetical protein; Provisional
Probab=91.00 E-value=1.2 Score=23.51 Aligned_cols=70 Identities=13% Similarity=0.186 Sum_probs=62.0
Q ss_pred ECCEEEEEEEECCHHHHHHHHHHHHHCCCEECCCCCCCCCEEEEEEEECHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 604168888731323310789988743540104213689849999996133565688998853276167888
Q gi|254780233|r 411 LLEPIEEVVIDVDEEHSGAVVQKMTLHKSEMIELRPSGTGRVRLVFLSPTRGLIGYQSQLMTDTRGTAIMNR 482 (624)
Q Consensus 411 ~lEPie~v~I~vp~ey~G~Vi~~l~~RrG~i~~m~~~~~g~~~l~~~vP~r~l~g~~~~l~s~T~G~g~~~~ 482 (624)
...|...+.|.+|=...|.+...|.+..+++.+.+... .+.+...+|....-.|...|..+|+|+..+..
T Consensus 132 ~~~~~~~~~~~~~Y~~~~~v~~~l~~~~~~i~~~~y~~--~V~~~~~v~~~~~~~~~~~l~~~t~G~v~i~~ 201 (204)
T PRK11568 132 RKTPLTEYTLQCEYSQLAGIEALLGQFDGKIINSDYQA--FVTLRVALPAAKVAEFSAKLADFSRGSLQLLA 201 (204)
T ss_pred EEEEEEEEEEEECHHHHHHHHHHHHHCCCEEEEEEECC--EEEEEEEECHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 99986899999867788999999998699897067147--08999998789999999999996799079996
No 483
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.99 E-value=0.21 Score=28.46 Aligned_cols=24 Identities=33% Similarity=0.578 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 499985468987788999999839614
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFR 47 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~ 47 (624)
-+||+|+-++|||||...| +|.+.
T Consensus 34 ~~aiiG~NGaGKSTLl~~i---~Gll~ 57 (285)
T PRK13636 34 VTAILGGNGAGKSTLFQNL---NGILK 57 (285)
T ss_pred EEEEECCCCCHHHHHHHHH---HCCCC
T ss_conf 9999999998099999999---65988
No 484
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.92 E-value=0.2 Score=28.56 Aligned_cols=54 Identities=20% Similarity=0.294 Sum_probs=30.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCC-CCCCC--C-EECCCCHHHHHCCCEEEEEEEEE
Q ss_conf 4999854689877889999998396142-32200--0-00388577987096064679999
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRD-NQRVS--E-RVMDCNDLEKERGITILAKVTSI 77 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~-~~~v~--~-~vmD~~~~EreRGITI~a~~~~~ 77 (624)
.+||+|+.++|||||...|+ |...- .|++. . -+-+....+..+-|++..++..+
T Consensus 30 ~i~IvG~sGsGKSTLl~ll~---gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 87 (234)
T cd03251 30 TVALVGPSGSGKSTLVNLIP---RFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFL 87 (234)
T ss_pred EEEEECCCCCHHHHHHHHHH---CCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCCCEE
T ss_conf 99999899982999999996---67667886899999996608999997317999368947
No 485
>PRK13947 shikimate kinase; Provisional
Probab=90.91 E-value=0.23 Score=28.17 Aligned_cols=43 Identities=28% Similarity=0.512 Sum_probs=31.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCH-HHHHCCCEE
Q ss_conf 3149998546898778899999983961423220000038857-798709606
Q gi|254780233|r 19 IRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCND-LEKERGITI 70 (624)
Q Consensus 19 IRNiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~-~EreRGITI 70 (624)
.|||.+||.-++||||+--.|-...|. .+.|.+. +|+.-|.||
T Consensus 1 mknI~LiG~mGsGKTtiGk~La~~L~~---------~fiD~D~~Ie~~~g~sI 44 (171)
T PRK13947 1 MKNIVLIGFMGTGKTTVGKKVATTLSF---------GFIDTDKEIEKMAGMTV 44 (171)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHCC---------CEEECHHHHHHHCCCCH
T ss_conf 985899799999889999999999796---------98987499998829988
No 486
>CHL00175 minD septum-site determining protein; Validated
Probab=90.91 E-value=0.51 Score=25.91 Aligned_cols=67 Identities=16% Similarity=0.219 Sum_probs=40.3
Q ss_pred EECCEEEEEECCCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEE-EEEECCCC
Q ss_conf 9899799997289875407999999874217899997687886478999999997299789-99975436
Q gi|254780233|r 78 VWNDVRINIVDTPGHADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPI-VVVNKVDR 146 (624)
Q Consensus 78 ~~~~~~iNiiDTPGH~DF~gEVer~l~~~DgaiLvVdA~eGv~~QT~~vl~~A~~~~l~~I-vvINKiDr 146 (624)
.|.+|-+-|||||...+. .+..++.++|.+++|+....=-...++.++......+++.+ +++|++..
T Consensus 121 ~~~~yDyiiID~ppgl~~--~~~~al~aad~viIvttpe~~al~da~~~i~~~~~~~~~~~~lvvN~~~~ 188 (279)
T CHL00175 121 KERNYDYILIDCPAGIDV--GFINAIAPAKEAIVVTTPEITAIRDADRVAGLLEANGIYNIKLLVNRVRP 188 (279)
T ss_pred HHCCCCEEEECCCCCCCH--HHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCC
T ss_conf 727999999818998889--99999997890699789978999999999999997599862135335645
No 487
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.88 E-value=0.2 Score=28.59 Aligned_cols=24 Identities=21% Similarity=0.408 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 499985468987788999999839614
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFR 47 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~ 47 (624)
-+||||+-++|||||...| +|.+.
T Consensus 39 ~~aIiG~nGsGKSTL~~~l---~Gll~ 62 (289)
T PRK13645 39 VTCVIGTTGSGKSTMIQLT---NGLII 62 (289)
T ss_pred EEEEECCCCCHHHHHHHHH---HCCCC
T ss_conf 9999999995799999999---65988
No 488
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=90.87 E-value=1.2 Score=23.43 Aligned_cols=14 Identities=14% Similarity=0.432 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHC
Q ss_conf 56899999888622
Q gi|254780233|r 152 DEVINEVFDLFSAL 165 (624)
Q Consensus 152 ~~v~~ei~dlf~~l 165 (624)
+...+++.+++++.
T Consensus 66 e~~~eeLE~~Li~a 79 (340)
T COG0552 66 EDLLEELEELLIEA 79 (340)
T ss_pred HHHHHHHHHHHHHC
T ss_conf 88999999999970
No 489
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=90.80 E-value=0.17 Score=28.99 Aligned_cols=13 Identities=31% Similarity=0.411 Sum_probs=6.7
Q ss_pred CCCCCCCCCCCEE
Q ss_conf 1233666654215
Q gi|254780233|r 311 PLKAQPIDPPTVT 323 (624)
Q Consensus 311 ~Lp~i~i~~Ptis 323 (624)
.+|++..+-|++|
T Consensus 126 ~~pPva~dGp~ls 138 (355)
T COG4962 126 NSPPVAIDGPTLS 138 (355)
T ss_pred ECCCCCCCCCCCC
T ss_conf 2486325787504
No 490
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=90.68 E-value=0.22 Score=28.31 Aligned_cols=20 Identities=30% Similarity=0.469 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 49998546898778899999
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELL 40 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL 40 (624)
-+||+|+.++|||||.-.|+
T Consensus 29 ~~~IvG~sGsGKSTLl~~l~ 48 (218)
T cd03290 29 LTMIVGQVGCGKSSLLLAIL 48 (218)
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999980999999985
No 491
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.67 E-value=0.21 Score=28.41 Aligned_cols=24 Identities=33% Similarity=0.548 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 499985468987788999999839614
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFR 47 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~ 47 (624)
-+||+|+-++|||||+-.| +|.+.
T Consensus 32 ~vaivG~nGsGKSTL~~~l---~Gll~ 55 (276)
T PRK13650 32 WLSIIGHNGSGKSTTVRLI---DGLLE 55 (276)
T ss_pred EEEEECCCCCHHHHHHHHH---HCCCC
T ss_conf 9999999998799999999---73889
No 492
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=90.63 E-value=0.23 Score=28.13 Aligned_cols=23 Identities=26% Similarity=0.484 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 99985468987788999999839614
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFR 47 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~ 47 (624)
+||+|+-++|||||...| +|.+.
T Consensus 53 vgllG~NGaGKSTLlk~I---~Gl~~ 75 (264)
T PRK13546 53 IGLVGINGSGKSTLSNII---GGSLS 75 (264)
T ss_pred EEEECCCCCHHHHHHHHH---HCCCC
T ss_conf 999989986199999999---67988
No 493
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=90.61 E-value=0.46 Score=26.18 Aligned_cols=19 Identities=32% Similarity=0.338 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHH
Q ss_conf 4999854689877889999
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDEL 39 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~L 39 (624)
-+||+|.-++|||||...|
T Consensus 34 i~aiiG~nGsGKSTL~~~i 52 (252)
T CHL00131 34 IHAIMGPNGSGKSTLSKVI 52 (252)
T ss_pred EEEEECCCCCCHHHHHHHH
T ss_conf 9999999999999999997
No 494
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=90.58 E-value=0.29 Score=27.52 Aligned_cols=23 Identities=39% Similarity=0.619 Sum_probs=20.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 99985468987788999999839
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSG 44 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG 44 (624)
|+|.|..++|||||+..|...-+
T Consensus 2 IgI~G~sgsGKTT~a~~L~~~l~ 24 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQLG 24 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89889998859999999999809
No 495
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=90.50 E-value=0.3 Score=27.40 Aligned_cols=24 Identities=42% Similarity=0.613 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 499985468987788999999839614
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFR 47 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~ 47 (624)
-+||+|+-++|||||...| +|.+.
T Consensus 35 ~~~ilGpnGsGKSTLl~~i---~G~~~ 58 (226)
T cd03234 35 VMAILGSSGSGKTTLLDAI---SGRVE 58 (226)
T ss_pred EEEEECCCCCHHHHHHHHH---HCCCC
T ss_conf 9999989996099999999---67897
No 496
>KOG0462 consensus
Probab=90.47 E-value=0.042 Score=32.98 Aligned_cols=156 Identities=24% Similarity=0.288 Sum_probs=104.9
Q ss_pred EEEEEEEECHHHHHHHHHHHHHHCCCCEE------EEEEEECCCCCCCCCCCCCCEEEEECCCCCEEEEHHHHHHHHCCE
Q ss_conf 49999996133565688998853276167------888870530135787877742588828985830033312321122
Q gi|254780233|r 451 RVRLVFLSPTRGLIGYQSQLMTDTRGTAI------MNRLFHSYQPHKGEIGGRSNGVLLSNEEGKVVAYALFNLEDRGSM 524 (624)
Q Consensus 451 ~~~l~~~vP~r~l~g~~~~l~s~T~G~g~------~~~~f~~Y~p~~g~i~~r~~G~lis~~~G~~~~yal~~lq~rG~~ 524 (624)
.+..+-.+|. +.+|--.+|.+.-||.-. =+..|..|.---.++-....+.|.|...| ||.++.++-|.-
T Consensus 458 ~v~~tii~P~-Ey~G~Vi~Lc~~rRgeq~dm~~i~~nr~~lky~lPl~elv~df~~~lks~tsG----yAs~dye~~gY~ 532 (650)
T KOG0462 458 YVEATIITPD-EYVGAVIELCSERRGEQKDMTYIDGNRVMLKYQLPLRELVGDFFDRLKSLTSG----YASFDYEDAGYQ 532 (650)
T ss_pred EEEEEEECCH-HHHHHHHHHHHHHHHHEECCEECCCCEEEEEEECCHHHHHHHHHHHHHCCCCC----EEEEEECCCCCC
T ss_conf 5799997768-98899999998722100032441587699999567688899999887403655----057762135665
Q ss_pred EECCCCEEECCEEEEEECCCCCCCCCCC--------------CCCCCCCCCCCCCCEEEEECCCCEEEHHHHHHHHHCCE
Q ss_conf 6279985437828676467543103441--------------66501221368873268855992333999988864583
Q gi|254780233|r 525 IVEPGDKVYQGMIVGIHTRENDLDVNVL--------------KGKKLTNMRASGKDEAVKLVPAVKMTLEQALSWIQNDE 590 (624)
Q Consensus 525 fv~pg~~vy~Gmivge~~r~~dl~vN~~--------------k~k~ltn~r~~~~d~~~~l~~~~~~~le~~~~~i~~De 590 (624)
+++-| -+=++.|...-|=..-+. |.|.+ +..+--+..+|....-+....+.+.-.+.|+
T Consensus 533 ---~sdLv--kldil~n~~~vd~l~tivh~~~a~~rGr~~v~klk~~--ip~Q~~ev~iqa~igsk~iare~i~a~rKdv 605 (650)
T KOG0462 533 ---ASDLV--KLDILLNGKMVDGLSTIVHLSKAESRGREFVQKLKDL--IPRQIFEVHIQACIGSKNIARETISAYRKDV 605 (650)
T ss_pred ---CCCCE--EEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHCCCCHHHHHHHHHHCCCE
T ss_conf ---45515--7776403102456777878987999999999876664--4124321213642363055689998735561
Q ss_pred EEEECCCCE-EEEEECCCHHHHHHHHHHH
Q ss_conf 999988771-6763015965768888766
Q gi|254780233|r 591 LVEVTPKSI-RLRKMYLDPNERKRKGKSV 618 (624)
Q Consensus 591 lvevtP~~i-R~RK~~l~~~~r~~~~k~~ 618 (624)
++.+.+..+ |+-|.+-.+.+.|+.+|..
T Consensus 606 ~akl~ggdv~r~~klL~~q~egkk~mk~v 634 (650)
T KOG0462 606 LAKLYGGDVTRLKKLLKKQAEGKKRMKTV 634 (650)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEECC
T ss_conf 56765873245999987664385566325
No 497
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.47 E-value=0.22 Score=28.29 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 49998546898778899999983961
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVF 46 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~ 46 (624)
-+||+|+-++|||||.-.| +|.+
T Consensus 36 ~vaiiG~nGsGKSTL~~~l---~Gll 58 (283)
T PRK13640 36 WTALIGHNGSGKSTISKLI---NGLL 58 (283)
T ss_pred EEEEECCCCCHHHHHHHHH---HCCC
T ss_conf 9999999998799999999---6403
No 498
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=90.44 E-value=0.26 Score=27.85 Aligned_cols=23 Identities=30% Similarity=0.629 Sum_probs=0.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 99985468987788999999839614
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFR 47 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~ 47 (624)
+||+|+-++|||||...| +|...
T Consensus 34 ~~liGpnGaGKSTL~~~i---~Gl~~ 56 (255)
T PRK11300 34 VSLIGPNGAGKTTVFNCL---TGFYK 56 (255)
T ss_pred EEEECCCCCCHHHHHHHH---HCCCC
T ss_conf 999989996499999999---67988
No 499
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=90.41 E-value=0.56 Score=25.60 Aligned_cols=46 Identities=24% Similarity=0.356 Sum_probs=0.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCC---CCCCCCCC---CEECCCCHHHHH-CCCEE
Q ss_conf 999854689877889999998396---14232200---000388577987-09606
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGV---FRDNQRVS---ERVMDCNDLEKE-RGITI 70 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~---~~~~~~v~---~~vmD~~~~Ere-RGITI 70 (624)
+||+|.-++|||||...| +|. -...|++. ..+.+..+.+|. +||.+
T Consensus 30 ~~iiG~nGaGKSTLl~~i---~G~~~~~~~~G~I~~~G~~i~~~~~~~~~~~~i~~ 82 (248)
T PRK09580 30 HAIMGPNGSGKSTLSATL---AGREDYEVTGGTVTFKGKDLLELSPEDRAGEGIFM 82 (248)
T ss_pred EEEECCCCCCHHHHHHHH---HCCCCCCCCCCEEEECCEECCCCCHHHHHHCCEEE
T ss_conf 999999999999999998---37755687523599999985648988997455679
No 500
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=90.37 E-value=0.65 Score=25.18 Aligned_cols=50 Identities=20% Similarity=0.292 Sum_probs=0.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCC-CCCCCC---CEECCCCHHHHHCCCEEEEEE
Q ss_conf 99985468987788999999839614-232200---000388577987096064679
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFR-DNQRVS---ERVMDCNDLEKERGITILAKV 74 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~-~~~~v~---~~vmD~~~~EreRGITI~a~~ 74 (624)
+||+|.-++|||||...| +|..+ ..|++. ..+......++.|.|.+..++
T Consensus 30 ~~iiG~nGaGKSTLlk~i---~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ig~v~Q~ 83 (211)
T cd03225 30 VLIVGPNGSGKSTLLRLL---NGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQN 83 (211)
T ss_pred EEEECCCCCCHHHHHHHH---HCCCCCCCCCEEECCEECCCCCHHHHHCCEEEEEEC
T ss_conf 999889999899999999---646779888778999999979989984038999778
Done!