HHsearch alignment for GI: 254780233 and conserved domain: pfam04670
>pfam04670 Gtr1_RagA Gtr1/RagA G protein conserved region. GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B.
Probab=98.27 E-value=6.4e-05 Score=51.50 Aligned_cols=114 Identities=17% Similarity=0.289 Sum_probs=74.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECC-EEEEEECCCCCCCCHH---
Q ss_conf 999854689877889999998396142322000003885779870960646799999899-7999972898754079---
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWND-VRINIVDTPGHADFGG--- 97 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~-~~iNiiDTPGH~DF~g--- 97 (624)
T Consensus 2 iLLMG~~~sGKTSi~~vIF~~~------~p-~----dT~~----L~~T~~ve~~~v~~~~~l~l~iwD~pGq~~f~e~~~ 66 (230)
T pfam04670 2 VLLMGLRGSGKSSMRSIIFSNY------SP-R----DTLR----LGATIDVEQSHVRFLGNLTLNLWDCPGQDDFMENYL 66 (230)
T ss_pred EEEECCCCCCHHHHHHHHHCCC------CH-H----HHCC----CCCCCCEEEEEEECCCCCEEEEEECCCCHHHHHHHC
T ss_conf 7875689998777699986799------82-1----4120----257777677877416873689997698353544120
Q ss_pred --HHHHHHHHHCEEEEEEECCCCCCHHH----HHHHHHHHHC--CCCEEEEEECCCCCCCC
Q ss_conf --99999874217899997687886478----9999999972--99789999754366740
Q gi|254780233|r 98 --EVERILCMVESVVVLVDAAEGPMPQT----KFVVGKALKI--GLRPIVVVNKVDRSDAR 150 (624)
Q Consensus 98 --EVer~l~~~DgaiLvVdA~eGv~~QT----~~vl~~A~~~--~l~~IvvINKiDr~~a~ 150 (624)
T Consensus 67 ~~~~e~if~~v~~lIyV~D~q~~~~~~~l~~~~~~l~~~~~~sp~~~v~vfiHK~D~l~~d 127 (230)
T pfam04670 67 TRQKEHIFSNVGVLIYVFDVESREYEEDLATLVKIIEALYQYSPNAKVFVLIHKMDLLSED 127 (230)
T ss_pred CCCHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHH
T ss_conf 0223547644788999996888609999999999999999839998899999603588866