HHsearch alignment for GI: 254780233 and conserved domain: pfam04670

>pfam04670 Gtr1_RagA Gtr1/RagA G protein conserved region. GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B.
Probab=98.27  E-value=6.4e-05  Score=51.50  Aligned_cols=114  Identities=17%  Similarity=0.289  Sum_probs=74.3

Q ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECC-EEEEEECCCCCCCCHH---
Q ss_conf             999854689877889999998396142322000003885779870960646799999899-7999972898754079---
Q gi|254780233|r   22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWND-VRINIVDTPGHADFGG---   97 (624)
Q Consensus        22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~-~~iNiiDTPGH~DF~g---   97 (624)
T Consensus         2 iLLMG~~~sGKTSi~~vIF~~~------~p-~----dT~~----L~~T~~ve~~~v~~~~~l~l~iwD~pGq~~f~e~~~   66 (230)
T pfam04670         2 VLLMGLRGSGKSSMRSIIFSNY------SP-R----DTLR----LGATIDVEQSHVRFLGNLTLNLWDCPGQDDFMENYL   66 (230)
T ss_pred             EEEECCCCCCHHHHHHHHHCCC------CH-H----HHCC----CCCCCCEEEEEEECCCCCEEEEEECCCCHHHHHHHC
T ss_conf             7875689998777699986799------82-1----4120----257777677877416873689997698353544120


Q ss_pred             --HHHHHHHHHCEEEEEEECCCCCCHHH----HHHHHHHHHC--CCCEEEEEECCCCCCCC
Q ss_conf             --99999874217899997687886478----9999999972--99789999754366740
Q gi|254780233|r   98 --EVERILCMVESVVVLVDAAEGPMPQT----KFVVGKALKI--GLRPIVVVNKVDRSDAR  150 (624)
Q Consensus        98 --EVer~l~~~DgaiLvVdA~eGv~~QT----~~vl~~A~~~--~l~~IvvINKiDr~~a~  150 (624)
T Consensus        67 ~~~~e~if~~v~~lIyV~D~q~~~~~~~l~~~~~~l~~~~~~sp~~~v~vfiHK~D~l~~d  127 (230)
T pfam04670        67 TRQKEHIFSNVGVLIYVFDVESREYEEDLATLVKIIEALYQYSPNAKVFVLIHKMDLLSED  127 (230)
T ss_pred             CCCHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHH
T ss_conf             0223547644788999996888609999999999999999839998899999603588866