HHsearch alignment for GI: 254780233 and conserved domain: pfam05049
>pfam05049 IIGP Interferon-inducible GTPase (IIGP). Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing.
Probab=96.87 E-value=0.02 Score=35.09 Aligned_cols=169 Identities=15% Similarity=0.233 Sum_probs=83.4
Q ss_pred CCCC-EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEE-EEEEEEECC-EEEEEECCCCC-
Q ss_conf 2431-4999854689877889999998396142322000003885779870960646-799999899-79999728987-
Q gi|254780233|r 17 MQIR-NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILA-KVTSIVWND-VRINIVDTPGH- 92 (624)
Q Consensus 17 ~~IR-NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a-~~~~~~~~~-~~iNiiDTPGH- 92 (624)
T Consensus 32 ~~~~lnIavtGesG~GkSsfINal---Rg~g~e~~~aA~-----------tGvvetT~~~~~Y~hp~~pnV~lwDLPG~g 97 (375)
T pfam05049 32 SSAPLKIAVTGDSGNGKSSFINAL---RGIGHEEDGSAP-----------TGVVETTMKRTPYSHPHFPNVVLWDLPGLG 97 (375)
T ss_pred HCCCEEEEEECCCCCCHHHHHHHH---HCCCCCCCCCCC-----------CCCEEECCCCCCCCCCCCCCEEEECCCCCC
T ss_conf 438247998548998678999987---478987777687-----------687663267556789999980796289999
Q ss_pred -CCCHHHHH--H-HHHHHCEEEEEEECCCCCCHHHHHHHHH-HHHCCCCEEEEEECCCCC----------CCCHHHHHHH
Q ss_conf -54079999--9-9874217899997687886478999999-997299789999754366----------7402568999
Q gi|254780233|r 93 -ADFGGEVE--R-ILCMVESVVVLVDAAEGPMPQTKFVVGK-ALKIGLRPIVVVNKVDRS----------DARADEVINE 157 (624)
Q Consensus 93 -~DF~gEVe--r-~l~~~DgaiLvVdA~eGv~~QT~~vl~~-A~~~~l~~IvvINKiDr~----------~a~~~~v~~e 157 (624)
T Consensus 98 t~~f~~~~Yl~~~~f~~yDfFiiiss~rf~---~n~v~LAk~i~~mgK~fyfVrtKvD~Dl~~e~~~kp~~F~~e~~Lq~ 174 (375)
T pfam05049 98 ATNFTVETYLEEMKFSEYDFFIIISSERFS---LNDVKLAKAIQRMGKRFYFVRTKLDSDLSNEQKGKPQTFPKEKVLQN 174 (375)
T ss_pred CCCCCHHHHHHHCCCCCCCEEEEEECCCCC---HHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHCCCCCCCHHHHHHH
T ss_conf 899898999987485647789999677543---20189999999838947999862367606576258999998999999
Q ss_pred HHHHHHHCCCCHHHCCHHHHH-HHHHCCEECCCCCCCCCCCCHHHHHHHHCCCCCC
Q ss_conf 998886226730110426688-7886591646742233486413555321024542
Q gi|254780233|r 158 VFDLFSALDATDAQLDFPILY-GSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPP 212 (624)
Q Consensus 158 i~dlf~~l~a~de~ld~Pv~~-~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~iP~P 212 (624)
T Consensus 175 IR~~c~~-~L~k~gv~eP~VFLvSnfd---------l~~yDFp~L~~TL~~eLP~h 220 (375)
T pfam05049 175 IQDNCRN-NLQKEGVKEPPIFLVSNLD---------PSHYDFPKLRDTLLKDLPII 220 (375)
T ss_pred HHHHHHH-HHHHCCCCCCCEEEEECCC---------HHHCCHHHHHHHHHHHHHHH
T ss_conf 9999999-9987588899789981788---------13268189999999873686