HHsearch alignment for GI: 254780233 and conserved domain: pfam08477

>pfam08477 Miro Miro-like protein. Mitochondrial Rho proteins (Miro-1 and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis.
Probab=98.63  E-value=8.6e-07  Score=63.80  Aligned_cols=111  Identities=18%  Similarity=0.211  Sum_probs=74.4

Q ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHHH
Q ss_conf             99985468987788999999839614232200000388577987096064679999989979999728987540799999
Q gi|254780233|r   22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVER  101 (624)
Q Consensus        22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVer  101 (624)
T Consensus         2 ivvvG~~~vGKTSLi~r~~~--~~f~~~~~~-----------~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~   68 (118)
T pfam08477         2 VVVIGDKGSGKSSLLSQLVG--GEFPPEIPE-----------EIQGDTLAVDTLEVDGDTELLHIWDFGGREELKFEHII   68 (118)
T ss_pred             EEEECCCCCCHHHHHHHHHH--CCCCCCCCC-----------CCCCCEEEEEEEEECCCEEEEEEEECCCCHHHHHHHHH
T ss_conf             99999899789999999983--988876667-----------87777688899999992899999989996777666654


Q ss_pred             HHHHHCEEEEEEECCCCCCHHH-HH--HHHH-H--HHCCCCEEEEEECCC
Q ss_conf             9874217899997687886478-99--9999-9--972997899997543
Q gi|254780233|r  102 ILCMVESVVVLVDAAEGPMPQT-KF--VVGK-A--LKIGLRPIVVVNKVD  145 (624)
Q Consensus       102 ~l~~~DgaiLvVdA~eGv~~QT-~~--vl~~-A--~~~~l~~IvvINKiD  145 (624)
T Consensus        69 ~~~~~d~~ilvydit~~~Sf~~~~~~~~~i~~~~~~~~~~piilVGnK~D  118 (118)
T pfam08477        69 FMKTADAILLVYDLTDRESLNRVSRLIAWLPHLRKLGKKIPVILVGNKFD  118 (118)
T ss_pred             HCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf             22587467899979987899999999999999982099998899996859