HHsearch alignment for GI: 254780233 and conserved domain: pfam08477
>pfam08477 Miro Miro-like protein. Mitochondrial Rho proteins (Miro-1 and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis.
Probab=98.63 E-value=8.6e-07 Score=63.80 Aligned_cols=111 Identities=18% Similarity=0.211 Sum_probs=74.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHHH
Q ss_conf 99985468987788999999839614232200000388577987096064679999989979999728987540799999
Q gi|254780233|r 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVER 101 (624)
Q Consensus 22 iaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVer 101 (624)
T Consensus 2 ivvvG~~~vGKTSLi~r~~~--~~f~~~~~~-----------~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~ 68 (118)
T pfam08477 2 VVVIGDKGSGKSSLLSQLVG--GEFPPEIPE-----------EIQGDTLAVDTLEVDGDTELLHIWDFGGREELKFEHII 68 (118)
T ss_pred EEEECCCCCCHHHHHHHHHH--CCCCCCCCC-----------CCCCCEEEEEEEEECCCEEEEEEEECCCCHHHHHHHHH
T ss_conf 99999899789999999983--988876667-----------87777688899999992899999989996777666654
Q ss_pred HHHHHCEEEEEEECCCCCCHHH-HH--HHHH-H--HHCCCCEEEEEECCC
Q ss_conf 9874217899997687886478-99--9999-9--972997899997543
Q gi|254780233|r 102 ILCMVESVVVLVDAAEGPMPQT-KF--VVGK-A--LKIGLRPIVVVNKVD 145 (624)
Q Consensus 102 ~l~~~DgaiLvVdA~eGv~~QT-~~--vl~~-A--~~~~l~~IvvINKiD 145 (624)
T Consensus 69 ~~~~~d~~ilvydit~~~Sf~~~~~~~~~i~~~~~~~~~~piilVGnK~D 118 (118)
T pfam08477 69 FMKTADAILLVYDLTDRESLNRVSRLIAWLPHLRKLGKKIPVILVGNKFD 118 (118)
T ss_pred HCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf 22587467899979987899999999999999982099998899996859