HHsearch alignment for GI: 254780233 and conserved domain: pfam09547
>pfam09547 Spore_IV_A Stage IV sporulation protein A (spore_IV_A). SpoIVA is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=95.58 E-value=0.16 Score=29.11 Aligned_cols=125 Identities=24% Similarity=0.295 Sum_probs=64.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCC--CCEECCCCHHHHHCCCEEEEE--------EEEEEEC---CEEEEEE
Q ss_conf 49998546898778899999983961423220--000038857798709606467--------9999989---9799997
Q gi|254780233|r 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRV--SERVMDCNDLEKERGITILAK--------VTSIVWN---DVRINIV 87 (624)
Q Consensus 21 NiaIiaHvDhGKTTL~d~LL~~sG~~~~~~~v--~~~vmD~~~~EreRGITI~a~--------~~~~~~~---~~~iNii 87 (624)
T Consensus 19 YiGVVGPVRTGKSTFIKrFMe~~-VlPnI~~~~~keRa~DELPQS~-aGktIMTTEPKFVP~eAv~I~l~~~~~~kVRLi 96 (492)
T pfam09547 19 YIGVVGPVRTGKSTFIKRFMELL-VLPNIENEYKKERAKDELPQSG-SGKTIMTTEPKFVPNEAVEIKLDDGLKFKVRLV 96 (492)
T ss_pred EEEEECCCCCCCHHHHHHHHHHH-CCCCCCCHHHHHHHHCCCCCCC-CCCCEECCCCCCCCCCCEEEEECCCCEEEEEEE
T ss_conf 99962672067366999999985-4688898778776430377678-998133368876653104888369844899999
Q ss_pred CCCCCCCC---HHHHHHHHHHH----------------------------CEEEEEEECCCCCCH------HHHHHHHHH
Q ss_conf 28987540---79999998742----------------------------178999976878864------789999999
Q gi|254780233|r 88 DTPGHADF---GGEVERILCMV----------------------------ESVVVLVDAAEGPMP------QTKFVVGKA 130 (624)
Q Consensus 88 DTPGH~DF---~gEVer~l~~~----------------------------DgaiLvVdA~eGv~~------QT~~vl~~A 130 (624)
T Consensus 97 DCVGY~V~gA~Gy~e~~~~RmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dIpRe~Y~eAEervI~EL 176 (492)
T pfam09547 97 DCVGYIVEGALGYEEEDGPRMVKTPWFDEEIPFEEAAEIGTRKVITEHSTIGLVVTTDGSITDIPRENYVEAEERVIEEL 176 (492)
T ss_pred EECCEEECCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHCCCCEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 65256755755554689751304898788878688876465413315771449995688756766444235799999999
Q ss_pred HHCCCCEEEEEECCCCC
Q ss_conf 97299789999754366
Q gi|254780233|r 131 LKIGLRPIVVVNKVDRS 147 (624)
Q Consensus 131 ~~~~l~~IvvINKiDr~ 147 (624)
T Consensus 177 k~i~KPFiillNs~~P~ 193 (492)
T pfam09547 177 KEIGKPFIILLNSQRPY 193 (492)
T ss_pred HHHCCCEEEEEECCCCC
T ss_conf 97099889998389989