HHsearch alignment for GI: 254780233 and conserved domain: smart00176
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=98.88 E-value=1.9e-08 Score=74.69 Aligned_cols=147 Identities=20% Similarity=0.260 Sum_probs=92.5
Q ss_pred ECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHHHHHH
Q ss_conf 85468987788999999839614232200000388577987096064679999989979999728987540799999987
Q gi|254780233|r 25 IAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVERILC 104 (624)
Q Consensus 25 iaHvDhGKTTL~d~LL~~sG~~~~~~~v~~~vmD~~~~EreRGITI~a~~~~~~~~~~~iNiiDTPGH~DF~gEVer~l~ 104 (624)
T Consensus 1 vGD~gVGKTsli~R~~--~~~F~~~y~p--Ti----------Gvd~~~~~~~~~~~~i~l~iWDTAGqE~f~sl~~~yyr 66 (200)
T smart00176 1 VGDGGTGKTTFVKRHL--TGEFEKKYVA--TL----------GVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYI 66 (200)
T ss_pred CCCCCCCHHHHHHHHH--CCCCCCCCCC--CE----------EEEEEEEEEEECCEEEEEEEEECCCCCCCCCCCHHHCC
T ss_conf 9898878999999994--0999999788--71----------48989999998998999999989887000110265505
Q ss_pred HHCEEEEEEECCCCCCHHHH---HHHHHHH---HCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHH
Q ss_conf 42178999976878864789---9999999---72997899997543667402568999998886226730110426688
Q gi|254780233|r 105 MVESVVVLVDAAEGPMPQTK---FVVGKAL---KIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFPILY 178 (624)
Q Consensus 105 ~~DgaiLvVdA~eGv~~QT~---~vl~~A~---~~~l~~IvvINKiDr~~a~~~~v~~ei~dlf~~l~a~de~ld~Pv~~ 178 (624)
T Consensus 67 ~a~~~IlvfDvt~~---~SF~~l~~W~~~l~~~~~~ipiiLvGNK~DL~~r~---V~~e~~~-~a~------~~~~~y~E 133 (200)
T smart00176 67 QGQCAIIMFDVTAR---VTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRK---VKAKSIT-FHR------KKNLQYYD 133 (200)
T ss_pred CCCEEEEEEECCCH---HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC---CCHHHHH-HHH------HCCCCEEE
T ss_conf 78788999635877---89998999999999857999889999887574043---6599999-999------87997898
Q ss_pred HHHHCCEECCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 7886591646742233486413555321024
Q gi|254780233|r 179 GSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV 209 (624)
Q Consensus 179 ~Sa~~G~~~~~~~~~~~~gl~~Lld~Ii~~i 209 (624)
T Consensus 134 tSAKt~-----------~Nv~e~F~~Lar~L 153 (200)
T smart00176 134 ISAKSN-----------YNFEKPFLWLARKL 153 (200)
T ss_pred EECCCC-----------CCHHHHHHHHHHHH
T ss_conf 300469-----------69799999999998